locus-tag	class	description
CXD94_RS00005	COG0445	tRNA wobble uridine modification
CXD94_RS00010	COG0357	Ribosomal RNA small subunit methyltransferase G
CXD94_RS00015	COG1192	Involved in chromosome partitioning
CXD94_RS00025	COG1475	DNA binding
CXD94_RS00050	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CXD94_RS00060	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CXD94_RS00070	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CXD94_RS00075	COG0081	regulation of translation
CXD94_RS00080	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CXD94_RS00085	COG0222	ribosome binding
CXD94_RS00090	COG0085	RNA polymerase activity
CXD94_RS00095	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CXD94_RS00145	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS00170	COG1024	Enoyl-CoA hydratase
CXD94_RS00190	COG0752	glycyl-tRNA synthetase alpha subunit
CXD94_RS00195	COG0751	glycine-tRNA ligase activity
CXD94_RS00200	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CXD94_RS00205	COG0204	Acyl-transferase
CXD94_RS00220	COG0242	peptide deformylase activity
CXD94_RS00260	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CXD94_RS00265	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CXD94_RS00265	COG2813	Specifically methylates the guanine in position
CXD94_RS00280	COG2223	nitrite transmembrane transporter activity
CXD94_RS00290	COG1794	racemase activity, acting on amino acids and derivatives
CXD94_RS00295	COG1126	abc transporter atp-binding protein
CXD94_RS00300	COG0765	amino acid transport
CXD94_RS00305	COG0765	amino acid transport
CXD94_RS00310	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS00375	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CXD94_RS00405	COG0326	Molecular chaperone. Has ATPase activity
CXD94_RS00410	COG0625	glutathione transferase activity
CXD94_RS00425	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CXD94_RS00430	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CXD94_RS00460	COG0438	transferase activity, transferring glycosyl groups
CXD94_RS00465	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CXD94_RS00470	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CXD94_RS00500	COG0859	PFAM glycosyl transferase family 9
CXD94_RS00515	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CXD94_RS00525	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CXD94_RS00530	COG1127	ABC transporter
CXD94_RS00550	COG1686	Belongs to the peptidase S11 family
CXD94_RS00560	COG2921	Belongs to the UPF0250 family
CXD94_RS00565	COG0321	lipoyl(octanoyl) transferase activity
CXD94_RS00570	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CXD94_RS00605	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CXD94_RS00615	COG0018	arginyl-trna synthetase
CXD94_RS00635	COG0395	ABC-type sugar transport system, permease component
CXD94_RS00640	COG1175	transmembrane transport
CXD94_RS00645	COG1653	transport
CXD94_RS00650	COG3842	ATPase activity
CXD94_RS00655	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CXD94_RS00665	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CXD94_RS00685	COG1609	Transcriptional regulator
CXD94_RS00695	COG0154	amidase activity
CXD94_RS00700	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CXD94_RS00710	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CXD94_RS00720	COG0583	DNA-binding transcription factor activity
CXD94_RS00740	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CXD94_RS00755	COG1802	Transcriptional regulator
CXD94_RS00770	COG1024	Enoyl-CoA hydratase
CXD94_RS00780	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS00795	COG1984	allophanate hydrolase subunit 2
CXD94_RS00800	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CXD94_RS00810	COG0583	DNA-binding transcription factor activity
CXD94_RS00815	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CXD94_RS00825	COG5002	protein histidine kinase activity
CXD94_RS00835	COG5002	protein histidine kinase activity
CXD94_RS00840	COG0745	RESPONSE REGULATOR receiver
CXD94_RS00845	COG2226	methyltransferase
CXD94_RS00860	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CXD94_RS00880	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CXD94_RS00890	COG0513	Belongs to the DEAD box helicase family
CXD94_RS00895	COG1280	lysine exporter protein (LysE YggA)
CXD94_RS00900	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CXD94_RS00940	COG1054	Belongs to the UPF0176 family
CXD94_RS00945	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CXD94_RS00945	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CXD94_RS00955	COG0489	protein tyrosine kinase activity
CXD94_RS00970	COG0717	Belongs to the dCTP deaminase family
CXD94_RS01000	COG2081	HI0933 family
CXD94_RS01010	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CXD94_RS01020	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CXD94_RS01025	COG0509	glycine decarboxylation via glycine cleavage system
CXD94_RS01030	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CXD94_RS01030	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CXD94_RS01070	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CXD94_RS01085	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CXD94_RS01095	COG1414	Transcriptional regulator
CXD94_RS01100	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS01105	COG2031	fatty acid transporter
CXD94_RS01110	COG1250	3-hydroxyacyl-CoA dehydrogenase
CXD94_RS01120	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
CXD94_RS01125	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CXD94_RS01135	COG4257	antibiotic catabolic process
CXD94_RS01160	COG1012	belongs to the aldehyde dehydrogenase family
CXD94_RS01165	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CXD94_RS01170	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CXD94_RS01195	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS01205	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CXD94_RS01215	COG2188	Transcriptional regulator
CXD94_RS01220	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
CXD94_RS01245	COG0617	tRNA 3'-terminal CCA addition
CXD94_RS01260	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CXD94_RS01265	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CXD94_RS01270	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CXD94_RS01275	COG0586	Pfam SNARE associated Golgi protein
CXD94_RS01280	COG0860	N-Acetylmuramoyl-L-alanine amidase
CXD94_RS01285	COG0802	atpase or kinase
CXD94_RS01290	COG0114	fumarate hydratase activity
CXD94_RS01300	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS01310	COG0405	Gamma-glutamyltransferase
CXD94_RS01315	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS01350	COG1294	oxidase, subunit
CXD94_RS01360	COG4988	ABC transporter
CXD94_RS01365	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CXD94_RS01415	COG2969	positive regulation of protein catabolic process
CXD94_RS01420	COG0625	glutathione transferase activity
CXD94_RS01425	COG2857	Cytochrome c1
CXD94_RS01430	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CXD94_RS01435	COG0723	plastoquinol--plastocyanin reductase activity
CXD94_RS01440	COG1970	mechanosensitive ion channel activity
CXD94_RS01445	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CXD94_RS01460	COG2808	Putative FMN-binding domain
CXD94_RS01465	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CXD94_RS01470	COG0747	negative chemotaxis
CXD94_RS01475	COG0657	acetylesterase activity
CXD94_RS01485	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CXD94_RS01490	COG2207	Transcriptional regulator
CXD94_RS01495	COG0129	dihydroxy-acid dehydratase activity
CXD94_RS01500	COG2814	Major facilitator Superfamily
CXD94_RS01505	COG0583	DNA-binding transcription factor activity
CXD94_RS01515	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
CXD94_RS01585	COG1024	Enoyl-CoA hydratase
CXD94_RS01590	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS01615	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CXD94_RS01620	COG0352	thiamine-phosphate diphosphorylase activity
CXD94_RS01635	COG1678	Uncharacterized ACR, COG1678
CXD94_RS01640	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CXD94_RS01645	COG0540	Belongs to the ATCase OTCase family
CXD94_RS01660	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CXD94_RS01670	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CXD94_RS01705	COG1234	tRNA 3'-trailer cleavage
CXD94_RS01725	COG3064	Membrane
CXD94_RS01755	COG1683	Conserved Protein
CXD94_RS01760	COG1120	ATPase activity
CXD94_RS01765	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CXD94_RS01770	COG4558	Periplasmic binding protein
CXD94_RS01775	COG3720	iron ion transport
CXD94_RS01785	COG3712	iron ion homeostasis
CXD94_RS01790	COG1595	DNA-templated transcription, initiation
CXD94_RS01825	COG1802	Transcriptional regulator
CXD94_RS01835	COG3069	C4-dicarboxylate transmembrane transporter activity
CXD94_RS01845	COG1012	belongs to the aldehyde dehydrogenase family
CXD94_RS01880	COG2860	membrane
CXD94_RS01885	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CXD94_RS01890	COG0708	Exodeoxyribonuclease III
CXD94_RS01895	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CXD94_RS01900	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CXD94_RS01905	COG0154	amidase activity
CXD94_RS01910	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CXD94_RS01915	COG1077	Cell shape determining protein MreB Mrl
CXD94_RS01920	COG1792	Involved in formation and maintenance of cell shape
CXD94_RS01930	COG0768	penicillin binding
CXD94_RS01935	COG0772	Belongs to the SEDS family
CXD94_RS01940	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CXD94_RS01945	COG0471	metal ion transport
CXD94_RS01950	COG1309	transcriptional regulator
CXD94_RS01960	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CXD94_RS01975	COG2823	Periplasmic or secreted lipoprotein
CXD94_RS01980	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CXD94_RS01995	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CXD94_RS02015	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS02025	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS02045	COG0492	ferredoxin-NADP+ reductase activity
CXD94_RS02055	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS02060	COG1024	Enoyl-CoA hydratase
CXD94_RS02060	COG1250	3-hydroxyacyl-CoA dehydrogenase
CXD94_RS02065	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS02070	COG0028	Belongs to the TPP enzyme family
CXD94_RS02095	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS02110	COG0697	spore germination
CXD94_RS02140	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CXD94_RS02145	COG0463	Glycosyl transferase, family 2
CXD94_RS02160	COG0786	glutamate:sodium symporter activity
CXD94_RS02170	COG2031	fatty acid transporter
CXD94_RS02185	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CXD94_RS02200	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CXD94_RS02215	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CXD94_RS02225	COG1285	pathogenesis
CXD94_RS02230	COG1253	flavin adenine dinucleotide binding
CXD94_RS02235	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS02240	COG1024	Enoyl-CoA hydratase
CXD94_RS02245	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS02250	COG0583	DNA-binding transcription factor activity
CXD94_RS02255	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS02265	COG0183	Belongs to the thiolase family
CXD94_RS02285	COG0583	DNA-binding transcription factor activity
CXD94_RS02290	COG1278	Cold shock
CXD94_RS02300	COG1802	Transcriptional regulator
CXD94_RS02305	COG1012	belongs to the aldehyde dehydrogenase family
CXD94_RS02310	COG2031	fatty acid transporter
CXD94_RS02315	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CXD94_RS02315	COG1017	nitric oxide dioxygenase activity
CXD94_RS02320	COG0251	oxidation-reduction process
CXD94_RS02340	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS02350	COG0583	DNA-binding transcription factor activity
CXD94_RS02355	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS02370	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
CXD94_RS02375	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CXD94_RS02380	COG0546	phosphoglycolate phosphatase activity
CXD94_RS02390	COG1530	ribonuclease E activity
CXD94_RS02410	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CXD94_RS02415	COG0159	tryptophan synthase activity
CXD94_RS02420	COG0133	tryptophan synthase activity
CXD94_RS02430	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CXD94_RS02435	COG3228	Belongs to the MtfA family
CXD94_RS02445	COG0251	oxidation-reduction process
CXD94_RS02450	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CXD94_RS02455	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CXD94_RS02470	COG2878	Part of a membrane complex involved in electron transport
CXD94_RS02475	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CXD94_RS02510	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CXD94_RS02530	COG1268	BioY protein
CXD94_RS02535	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CXD94_RS02540	COG1122	ATPase activity
CXD94_RS02545	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CXD94_RS02560	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CXD94_RS02565	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CXD94_RS02575	COG1196	nuclear chromosome segregation
CXD94_RS02580	COG0477	Major facilitator Superfamily
CXD94_RS02585	COG1573	uracil-dna glycosylase
CXD94_RS02590	COG1214	PFAM Peptidase M22, glycoprotease
CXD94_RS02610	COG0450	alkyl hydroperoxide reductase
CXD94_RS02615	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CXD94_RS02625	COG2223	nitrite transmembrane transporter activity
CXD94_RS02635	COG2186	Transcriptional regulator
CXD94_RS02655	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CXD94_RS02665	COG0583	DNA-binding transcription factor activity
CXD94_RS02675	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CXD94_RS02680	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CXD94_RS02685	COG0137	argininosuccinate synthase activity
CXD94_RS02690	COG3158	transport of potassium into the cell
CXD94_RS02695	COG0642	Histidine kinase
CXD94_RS02725	COG0776	regulation of translation
CXD94_RS02730	COG3128	pkhd-type hydroxylase
CXD94_RS02740	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CXD94_RS02745	COG0557	exoribonuclease II activity
CXD94_RS02770	COG0679	Auxin Efflux Carrier
CXD94_RS02775	COG2391	methyltransferase activity
CXD94_RS02780	COG0069	glutamate synthase activity
CXD94_RS02790	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CXD94_RS02800	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
CXD94_RS02840	COG3706	GGDEF domain
CXD94_RS02865	COG1053	succinate dehydrogenase
CXD94_RS02870	COG0583	DNA-binding transcription factor activity
CXD94_RS02885	COG1053	succinate dehydrogenase
CXD94_RS02905	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CXD94_RS02910	COG0459	protein refolding
CXD94_RS02915	COG3468	outer membrane autotransporter barrel domain protein
CXD94_RS02930	COG1252	NADH dehydrogenase
CXD94_RS02935	COG0284	orotidine-5'-phosphate decarboxylase activity
CXD94_RS02940	COG1058	Belongs to the CinA family
CXD94_RS02940	COG1546	Belongs to the CinA family
CXD94_RS02945	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CXD94_RS02955	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CXD94_RS02960	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CXD94_RS03000	COG3639	organic phosphonate transmembrane transporter activity
CXD94_RS03005	COG3639	organic phosphonate transmembrane transporter activity
CXD94_RS03025	COG0742	ribosomal rna small subunit methyltransferase
CXD94_RS03030	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CXD94_RS03035	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CXD94_RS03040	COG3135	benzoate transporter
CXD94_RS03055	COG0640	Transcriptional regulator
CXD94_RS03085	COG4172	Belongs to the ABC transporter superfamily
CXD94_RS03090	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS03095	COG0601	transmembrane transport
CXD94_RS03105	COG0281	malic enzyme
CXD94_RS03105	COG0280	phosphate acetyltransferase
CXD94_RS03165	COG0583	DNA-binding transcription factor activity
CXD94_RS03180	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CXD94_RS03185	COG0167	dihydroorotate dehydrogenase activity
CXD94_RS03205	COG1414	Transcriptional regulator
CXD94_RS03210	COG1058	Belongs to the CinA family
CXD94_RS03210	COG1546	Belongs to the CinA family
CXD94_RS03230	COG0513	Belongs to the DEAD box helicase family
CXD94_RS03260	COG0429	hydrolase of the alpha beta-hydrolase fold
CXD94_RS03265	COG4783	chaperone-mediated protein folding
CXD94_RS03280	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CXD94_RS03305	COG0006	proline dipeptidase activity
CXD94_RS03315	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CXD94_RS03335	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CXD94_RS03340	COG0632	four-way junction helicase activity
CXD94_RS03355	COG2255	four-way junction helicase activity
CXD94_RS03360	COG0514	ATP-dependent DNA helicase (RecQ)
CXD94_RS03375	COG0288	reversible hydration of carbon dioxide
CXD94_RS03380	COG0154	amidase activity
CXD94_RS03390	COG4211	Belongs to the binding-protein-dependent transport system permease family
CXD94_RS03420	COG1464	Belongs to the NlpA lipoprotein family
CXD94_RS03560	COG1196	nuclear chromosome segregation
CXD94_RS03635	COG2135	peptidase activity
CXD94_RS03650	COG0494	nUDIX hydrolase
CXD94_RS03655	COG0442	prolyl-tRNA aminoacylation
CXD94_RS03660	COG0824	Thioesterase
CXD94_RS03665	COG0811	peptide transport
CXD94_RS03670	COG0848	biopolymer transport protein
CXD94_RS03680	COG0823	Involved in the tonB-independent uptake of proteins
CXD94_RS03695	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CXD94_RS03700	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
CXD94_RS03735	COG0700	Nucleoside recognition
CXD94_RS03740	COG0469	pyruvate kinase activity
CXD94_RS03745	COG1929	Belongs to the glycerate kinase type-1 family
CXD94_RS03750	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CXD94_RS03755	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CXD94_RS03760	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CXD94_RS03770	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CXD94_RS03780	COG2154	pterin-4-alpha-carbinolamine dehydratase
CXD94_RS03805	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CXD94_RS03810	COG0154	amidase activity
CXD94_RS03820	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS03825	COG0601	transmembrane transport
CXD94_RS03830	COG0747	negative chemotaxis
CXD94_RS03850	COG0019	diaminopimelate decarboxylase activity
CXD94_RS03865	COG2353	YceI-like domain
CXD94_RS03870	COG4774	siderophore transport
CXD94_RS03875	COG3712	iron ion homeostasis
CXD94_RS03920	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CXD94_RS03925	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CXD94_RS03930	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CXD94_RS03935	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CXD94_RS03945	COG0142	geranyltranstransferase activity
CXD94_RS03955	COG0583	DNA-binding transcription factor activity
CXD94_RS03965	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
CXD94_RS03970	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CXD94_RS03990	COG2994	toxin metabolic process
CXD94_RS04000	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
CXD94_RS04005	COG2274	protein secretion by the type I secretion system
CXD94_RS04010	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CXD94_RS04015	COG1538	Outer membrane efflux protein
CXD94_RS04035	COG0765	amino acid transport
CXD94_RS04040	COG1126	abc transporter atp-binding protein
CXD94_RS04060	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS04070	COG1802	Transcriptional regulator
CXD94_RS04080	COG1802	Transcriptional regulator
CXD94_RS04090	COG0318	PFAM AMP-dependent synthetase and ligase
CXD94_RS04100	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS04120	COG0028	Belongs to the TPP enzyme family
CXD94_RS04140	COG0308	aminopeptidase N
CXD94_RS04145	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CXD94_RS04160	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CXD94_RS04165	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CXD94_RS04170	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CXD94_RS04175	COG0560	Phosphoserine phosphatase
CXD94_RS04180	COG0583	DNA-binding transcription factor activity
CXD94_RS04185	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS04190	COG0028	Belongs to the TPP enzyme family
CXD94_RS04205	COG4774	siderophore transport
CXD94_RS04210	COG4774	siderophore transport
CXD94_RS04220	COG1007	ATP synthesis coupled electron transport
CXD94_RS04235	COG0713	ATP synthesis coupled electron transport
CXD94_RS04245	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CXD94_RS04250	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CXD94_RS04255	COG1034	ATP synthesis coupled electron transport
CXD94_RS04265	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
CXD94_RS04270	COG0649	NAD binding
CXD94_RS04275	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CXD94_RS04280	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CXD94_RS04285	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CXD94_RS04290	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CXD94_RS04320	COG0671	phosphoesterase, PA-phosphatase related
CXD94_RS04330	COG1597	lipid kinase activity
CXD94_RS04335	COG0583	DNA-binding transcription factor activity
CXD94_RS04340	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CXD94_RS04350	COG1733	regulation of RNA biosynthetic process
CXD94_RS04355	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CXD94_RS04360	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CXD94_RS04375	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
CXD94_RS04395	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CXD94_RS04415	COG3608	succinylglutamate desuccinylase aspartoacylase
CXD94_RS04420	COG0626	cystathionine gamma-synthase activity
CXD94_RS04425	COG0583	DNA-binding transcription factor activity
CXD94_RS04460	COG3799	methylaspartate ammonia-lyase activity
CXD94_RS04470	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CXD94_RS04480	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CXD94_RS04485	COG0149	triose-phosphate isomerase activity
CXD94_RS04505	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CXD94_RS04520	COG1185	polyribonucleotide nucleotidyltransferase activity
CXD94_RS04525	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CXD94_RS04540	COG1183	phosphatidylcholine synthase activity
CXD94_RS04545	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CXD94_RS04550	COG0440	acetolactate synthase activity
CXD94_RS04555	COG0028	Belongs to the TPP enzyme family
CXD94_RS04570	COG5265	(ABC) transporter
CXD94_RS04575	COG0500	methyltransferase
CXD94_RS04595	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
CXD94_RS04615	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CXD94_RS04625	COG0511	ligase activity, forming carbon-carbon bonds
CXD94_RS04650	COG2188	Transcriptional regulator
CXD94_RS04655	COG0439	Biotin carboxylase
CXD94_RS04705	COG5265	(ABC) transporter
CXD94_RS04715	COG0667	Aldo Keto reductase
CXD94_RS04730	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CXD94_RS04770	COG0583	DNA-binding transcription factor activity
CXD94_RS04800	COG2814	Major facilitator Superfamily
CXD94_RS04810	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CXD94_RS04825	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CXD94_RS04835	COG0287	Prephenate dehydrogenase
CXD94_RS04840	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CXD94_RS04845	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CXD94_RS04865	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CXD94_RS04870	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
CXD94_RS04875	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CXD94_RS04880	COG1596	polysaccharide export
CXD94_RS04880	COG1555	photosystem II stabilization
CXD94_RS04895	COG2951	lytic endotransglycosylase activity
CXD94_RS04900	COG0123	including yeast histone deacetylase and acetoin utilization protein
CXD94_RS04915	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS04920	COG0450	alkyl hydroperoxide reductase
CXD94_RS04940	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CXD94_RS04975	COG0335	large ribosomal subunit rRNA binding
CXD94_RS04990	COG0667	Aldo Keto reductase
CXD94_RS05005	COG3161	chorismate lyase activity
CXD94_RS05010	COG1187	pseudouridine synthase activity
CXD94_RS05040	COG1999	signal sequence binding
CXD94_RS05045	COG0339	signal peptide processing
CXD94_RS05050	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CXD94_RS05055	COG4566	intracellular signal transduction
CXD94_RS05065	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CXD94_RS05070	COG0508	dehydrogenase complex catalyzes the overall conversion of
CXD94_RS05075	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CXD94_RS05080	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CXD94_RS05095	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CXD94_RS05100	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CXD94_RS05105	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CXD94_RS05110	COG0126	phosphoglycerate kinase activity
CXD94_RS05115	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CXD94_RS05120	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CXD94_RS05135	COG0625	glutathione transferase activity
CXD94_RS05165	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CXD94_RS05175	COG0521	Mo-molybdopterin cofactor biosynthetic process
CXD94_RS05185	COG0739	heme binding
CXD94_RS05195	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CXD94_RS05230	COG0745	RESPONSE REGULATOR receiver
CXD94_RS05245	COG0840	transmembrane signaling receptor activity
CXD94_RS05255	COG2201	protein-glutamate methylesterase activity
CXD94_RS05260	COG0745	RESPONSE REGULATOR receiver
CXD94_RS05265	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CXD94_RS05290	COG0667	Aldo Keto reductase
CXD94_RS05300	COG4535	Mg2 and Co2 transporter CorC
CXD94_RS05305	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CXD94_RS05310	COG1702	phosphate starvation-inducible protein PhoH
CXD94_RS05315	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CXD94_RS05330	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CXD94_RS05335	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CXD94_RS05340	COG1862	Preprotein translocase
CXD94_RS05345	COG0343	queuine tRNA-ribosyltransferase activity
CXD94_RS05350	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CXD94_RS05355	COG2027	D-alanyl-D-alanine carboxypeptidase
CXD94_RS05360	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CXD94_RS05385	COG1648	precorrin-2 dehydrogenase activity
CXD94_RS05385	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CXD94_RS05410	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CXD94_RS05415	COG0741	lytic transglycosylase activity
CXD94_RS05425	COG0436	Aminotransferase
CXD94_RS05435	COG0280	phosphate acetyltransferase
CXD94_RS05435	COG0281	malic enzyme
CXD94_RS05445	COG2732	(Barnase) inhibitor
CXD94_RS05460	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CXD94_RS05485	COG0248	Ppx GppA phosphatase
CXD94_RS05495	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CXD94_RS05505	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CXD94_RS05510	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CXD94_RS05515	COG1534	Rna-binding protein
CXD94_RS05545	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CXD94_RS05560	COG1295	ribonuclease BN
CXD94_RS05570	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CXD94_RS05575	COG0745	RESPONSE REGULATOR receiver
CXD94_RS05580	COG2205	protein histidine kinase activity
CXD94_RS05615	COG1022	Amp-dependent synthetase and ligase
CXD94_RS05630	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CXD94_RS05635	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS05645	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CXD94_RS05660	COG1136	(ABC) transporter
CXD94_RS05665	COG0084	hydrolase, TatD family'
CXD94_RS05690	COG2333	competence protein COMEC
CXD94_RS05690	COG0658	competence protein
CXD94_RS05700	COG0613	PHP domain protein
CXD94_RS05720	COG3539	Fimbrial protein
CXD94_RS05725	COG0280	phosphate acetyltransferase
CXD94_RS05725	COG0281	malic enzyme
CXD94_RS05735	COG1522	sequence-specific DNA binding
CXD94_RS05745	COG0567	Dehydrogenase, E1 component
CXD94_RS05750	COG0508	dehydrogenase complex catalyzes the overall conversion of
CXD94_RS05755	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CXD94_RS05760	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CXD94_RS05765	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS05770	COG0583	DNA-binding transcription factor activity
CXD94_RS05780	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS05805	COG0180	Tryptophanyl-tRNA synthetase
CXD94_RS05810	COG2183	response to ionizing radiation
CXD94_RS05815	COG1199	ATP-dependent helicase activity
CXD94_RS05825	COG0564	pseudouridine synthase activity
CXD94_RS05835	COG3243	poly(R)-hydroxyalkanoic acid synthase
CXD94_RS05840	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS05845	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
CXD94_RS05860	COG0672	)-iron permease
CXD94_RS05900	COG0583	DNA-binding transcription factor activity
CXD94_RS05910	COG2814	Major facilitator Superfamily
CXD94_RS05925	COG1619	proteins homologs of microcin C7 resistance protein MccF
CXD94_RS05940	COG2084	Dehydrogenase
CXD94_RS05945	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS05970	COG2988	succinylglutamate desuccinylase activity
CXD94_RS06000	COG0765	amino acid transport
CXD94_RS06005	COG0765	amino acid transport
CXD94_RS06010	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS06045	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CXD94_RS06050	COG1595	DNA-templated transcription, initiation
CXD94_RS06060	COG3530	Putative quorum-sensing-regulated virulence factor
CXD94_RS06065	COG0494	nUDIX hydrolase
CXD94_RS06080	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CXD94_RS06085	COG0542	response to heat
CXD94_RS06105	COG3468	outer membrane autotransporter barrel domain protein
CXD94_RS06115	COG5441	Belongs to the UPF0261 family
CXD94_RS06120	COG5564	TIM-barrel signal transduction protein
CXD94_RS06135	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CXD94_RS06150	COG1477	protein flavinylation
CXD94_RS06170	COG1131	(ABC) transporter
CXD94_RS06175	COG0842	Transport permease protein
CXD94_RS06185	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CXD94_RS06190	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
CXD94_RS06190	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
CXD94_RS06195	COG1562	ergosterol biosynthetic process
CXD94_RS06200	COG1562	ergosterol biosynthetic process
CXD94_RS06205	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CXD94_RS06210	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS06230	COG2304	oxidoreductase activity
CXD94_RS06250	COG0534	Mate efflux family protein
CXD94_RS06260	COG0254	rRNA binding
CXD94_RS06265	COG3483	tryptophan 2,3-dioxygenase activity
CXD94_RS06270	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
CXD94_RS06275	COG2003	Belongs to the UPF0758 family
CXD94_RS06280	COG1047	Peptidyl-prolyl cis-trans
CXD94_RS06285	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CXD94_RS06290	COG0625	glutathione transferase activity
CXD94_RS06310	COG0523	cobalamin synthesis protein
CXD94_RS06320	COG0583	DNA-binding transcription factor activity
CXD94_RS06330	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CXD94_RS06335	COG1187	pseudouridine synthase activity
CXD94_RS06340	COG0779	Required for maturation of 30S ribosomal subunits
CXD94_RS06345	COG0195	Participates in both transcription termination and antitermination
CXD94_RS06345	COG2251	uridine kinase activity
CXD94_RS06350	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CXD94_RS06355	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CXD94_RS06360	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CXD94_RS06380	COG1611	Belongs to the LOG family
CXD94_RS06395	COG0412	Dienelactone hydrolase
CXD94_RS06400	COG1283	sodium-dependent phosphate transmembrane transporter activity
CXD94_RS06405	COG1760	l-serine dehydratase
CXD94_RS06410	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CXD94_RS06415	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CXD94_RS06425	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CXD94_RS06450	COG2311	Membrane
CXD94_RS06475	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CXD94_RS06495	COG0559	Belongs to the binding-protein-dependent transport system permease family
CXD94_RS06515	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CXD94_RS06525	COG1653	transport
CXD94_RS06530	COG1175	transmembrane transport
CXD94_RS06535	COG0395	ABC-type sugar transport system, permease component
CXD94_RS06540	COG3842	ATPase activity
CXD94_RS06565	COG2363	Small membrane protein
CXD94_RS06580	COG1464	Belongs to the NlpA lipoprotein family
CXD94_RS06590	COG0688	phosphatidylethanolamine metabolic process
CXD94_RS06605	COG0095	Lipoate-protein ligase
CXD94_RS06620	COG0625	glutathione transferase activity
CXD94_RS06625	COG0386	Belongs to the glutathione peroxidase family
CXD94_RS06645	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS06675	COG2259	Doxx family
CXD94_RS06690	COG0667	Aldo Keto reductase
CXD94_RS06720	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
CXD94_RS06740	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CXD94_RS06750	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CXD94_RS06800	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CXD94_RS06805	COG3568	Endonuclease Exonuclease Phosphatase
CXD94_RS06815	COG1695	Transcriptional regulator
CXD94_RS06835	COG0583	DNA-binding transcription factor activity
CXD94_RS06850	COG1802	Transcriptional regulator
CXD94_RS06860	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS06870	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS06885	COG0066	3-isopropylmalate dehydratase activity
CXD94_RS06895	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS06900	COG4948	Mandelate Racemase Muconate Lactonizing
CXD94_RS06915	COG1126	abc transporter atp-binding protein
CXD94_RS06920	COG0765	amino acid transport
CXD94_RS06925	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS06965	COG1815	bacterial-type flagellum-dependent cell motility
CXD94_RS06970	COG1558	bacterial-type flagellum-dependent cell motility
CXD94_RS06980	COG1749	Flagellar hook protein flgE
CXD94_RS06995	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
CXD94_RS07000	COG1706	bacterial-type flagellum-dependent cell motility
CXD94_RS07010	COG1256	bacterial-type flagellum assembly
CXD94_RS07020	COG0840	transmembrane signaling receptor activity
CXD94_RS07025	COG0840	transmembrane signaling receptor activity
CXD94_RS07030	COG0840	transmembrane signaling receptor activity
CXD94_RS07050	COG1338	Plays a role in the flagellum-specific transport system
CXD94_RS07070	COG1580	Controls the rotational direction of flagella during chemotaxis
CXD94_RS07095	COG1157	protein secretion by the type III secretion system
CXD94_RS07100	COG1317	bacterial-type flagellum organization
CXD94_RS07105	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CXD94_RS07115	COG1677	Flagellar hook-basal body complex protein FliE
CXD94_RS07125	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CXD94_RS07160	COG0285	dihydrofolate synthase activity
CXD94_RS07190	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CXD94_RS07195	COG0024	Methionine aminopeptidase
CXD94_RS07200	COG0052	Belongs to the universal ribosomal protein uS2 family
CXD94_RS07205	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CXD94_RS07210	COG0528	UMP kinase activity
CXD94_RS07215	COG0233	cytoplasmic translational termination
CXD94_RS07220	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CXD94_RS07230	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CXD94_RS07235	COG0750	zinc metalloprotease
CXD94_RS07240	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CXD94_RS07245	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
CXD94_RS07250	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CXD94_RS07255	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CXD94_RS07265	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CXD94_RS07270	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CXD94_RS07275	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CXD94_RS07280	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CXD94_RS07290	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CXD94_RS07290	COG0519	Catalyzes the synthesis of GMP from XMP
CXD94_RS07305	COG0330	HflC and HflK could
CXD94_RS07310	COG3706	GGDEF domain
CXD94_RS07315	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CXD94_RS07325	COG2867	negative regulation of translational initiation
CXD94_RS07335	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS07340	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CXD94_RS07375	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CXD94_RS07380	COG0505	Belongs to the CarA family
CXD94_RS07385	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CXD94_RS07395	COG0406	alpha-ribazole phosphatase activity
CXD94_RS07405	COG3842	ATPase activity
CXD94_RS07425	COG5001	Diguanylate cyclase
CXD94_RS07430	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CXD94_RS07440	COG1763	Mo-molybdopterin cofactor biosynthetic process
CXD94_RS07445	COG0303	'Molybdopterin
CXD94_RS07450	COG0746	molybdenum cofactor guanylyltransferase activity
CXD94_RS07455	COG0489	protein tyrosine kinase activity
CXD94_RS07485	COG3383	formate dehydrogenase (NAD+) activity
CXD94_RS07485	COG0243	molybdopterin cofactor binding
CXD94_RS07520	COG1122	ATPase activity
CXD94_RS07530	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CXD94_RS07535	COG0066	3-isopropylmalate dehydratase activity
CXD94_RS07540	COG0473	3-isopropylmalate dehydrogenase activity
CXD94_RS07545	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CXD94_RS07555	COG0101	tRNA pseudouridine synthase activity
CXD94_RS07560	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
CXD94_RS07575	COG0135	phosphoribosylanthranilate isomerase activity
CXD94_RS07590	COG3022	response to hydroperoxide
CXD94_RS07630	COG2197	response regulator
CXD94_RS07635	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CXD94_RS07640	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CXD94_RS07645	COG0189	ligase activity
CXD94_RS07655	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CXD94_RS07660	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CXD94_RS07675	COG2423	ornithine cyclodeaminase activity
CXD94_RS07685	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS07690	COG0765	amino acid transport
CXD94_RS07695	COG0765	amino acid transport
CXD94_RS07700	COG1126	abc transporter atp-binding protein
CXD94_RS07755	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CXD94_RS07765	COG2944	sequence-specific DNA binding
CXD94_RS07775	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CXD94_RS07780	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CXD94_RS07785	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CXD94_RS07790	COG0009	L-threonylcarbamoyladenylate synthase
CXD94_RS07795	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS07800	COG1414	Transcriptional regulator
CXD94_RS07815	COG0765	amino acid transport
CXD94_RS07820	COG1126	abc transporter atp-binding protein
CXD94_RS07825	COG0028	Belongs to the TPP enzyme family
CXD94_RS07840	COG0028	Belongs to the TPP enzyme family
CXD94_RS07845	COG0583	DNA-binding transcription factor activity
CXD94_RS07850	COG4974	Belongs to the 'phage' integrase family
CXD94_RS07855	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CXD94_RS07860	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
CXD94_RS07875	COG1686	Belongs to the peptidase S11 family
CXD94_RS07885	COG2814	Major facilitator Superfamily
CXD94_RS07895	COG1074	ATP-dependent DNA helicase activity
CXD94_RS07905	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CXD94_RS07910	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CXD94_RS07915	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CXD94_RS07940	COG2321	neutral zinc metallopeptidase
CXD94_RS07945	COG0009	L-threonylcarbamoyladenylate synthase
CXD94_RS07990	COG3360	Dodecin
CXD94_RS07995	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CXD94_RS08000	COG2850	peptidyl-arginine hydroxylation
CXD94_RS08005	COG3539	Fimbrial protein
CXD94_RS08010	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CXD94_RS08015	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CXD94_RS08030	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS08035	COG0765	amino acid transport
CXD94_RS08040	COG1126	abc transporter atp-binding protein
CXD94_RS08045	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CXD94_RS08050	COG1758	RNA polymerase activity
CXD94_RS08055	COG0194	GDP metabolic process
CXD94_RS08060	COG3258	Cytochrome c
CXD94_RS08065	COG2863	cytochrome
CXD94_RS08070	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS08075	COG0791	NLP P60 protein
CXD94_RS08080	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CXD94_RS08100	COG1561	YicC-like family, N-terminal region
CXD94_RS08105	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
CXD94_RS08125	COG2199	diguanylate cyclase activity
CXD94_RS08125	COG2200	EAL domain
CXD94_RS08130	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CXD94_RS08140	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CXD94_RS08145	COG0174	glutamine synthetase
CXD94_RS08155	COG2204	response regulator
CXD94_RS08160	COG0583	DNA-binding transcription factor activity
CXD94_RS08165	COG1741	Belongs to the pirin family
CXD94_RS08170	COG1741	Belongs to the pirin family
CXD94_RS08180	COG3842	ATPase activity
CXD94_RS08185	COG1178	ABC-type Fe3 transport system permease component
CXD94_RS08190	COG1840	ABC-type Fe3 transport system, periplasmic component
CXD94_RS08200	COG0583	DNA-binding transcription factor activity
CXD94_RS08210	COG0656	L-ascorbic acid biosynthetic process
CXD94_RS08225	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CXD94_RS08230	COG0583	DNA-binding transcription factor activity
CXD94_RS08245	COG0783	Belongs to the Dps family
CXD94_RS08265	COG0463	Glycosyl transferase, family 2
CXD94_RS08285	COG0438	transferase activity, transferring glycosyl groups
CXD94_RS08300	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CXD94_RS08325	COG0300	oxidoreductase activity
CXD94_RS08370	COG0861	Integral membrane protein TerC family
CXD94_RS08375	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS08395	COG0714	Associated with various cellular activities
CXD94_RS08430	COG3119	arylsulfatase activity
CXD94_RS08455	COG2197	response regulator
CXD94_RS08465	COG2944	sequence-specific DNA binding
CXD94_RS08475	COG0625	glutathione transferase activity
CXD94_RS08505	COG0179	Fumarylacetoacetate (FAA) hydrolase
CXD94_RS08510	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS08555	COG0431	NADPH-dependent FMN reductase
CXD94_RS08585	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS08590	COG0583	DNA-binding transcription factor activity
CXD94_RS08610	COG2111	Na H antiporter
CXD94_RS08610	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CXD94_RS08615	COG1006	Multisubunit Na H antiporter MnhC subunit
CXD94_RS08620	COG0651	ATP synthesis coupled electron transport
CXD94_RS08625	COG1863	multisubunit Na H antiporter MnhE subunit
CXD94_RS08630	COG2212	antiporter activity
CXD94_RS08655	COG0590	tRNA wobble adenosine to inosine editing
CXD94_RS08660	COG1619	proteins homologs of microcin C7 resistance protein MccF
CXD94_RS08665	COG1024	Enoyl-CoA hydratase
CXD94_RS08680	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
CXD94_RS08685	COG0488	(ABC) transporter
CXD94_RS08720	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CXD94_RS08720	COG1017	nitric oxide dioxygenase activity
CXD94_RS08725	COG1959	2 iron, 2 sulfur cluster binding
CXD94_RS08730	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CXD94_RS08750	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CXD94_RS08755	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CXD94_RS08760	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CXD94_RS08765	COG0084	hydrolase, TatD family'
CXD94_RS08780	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS08790	COG1126	abc transporter atp-binding protein
CXD94_RS08800	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CXD94_RS08815	COG0028	Belongs to the TPP enzyme family
CXD94_RS08825	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CXD94_RS08825	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CXD94_RS08835	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CXD94_RS08885	COG4336	lyase activity
CXD94_RS08895	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS08895	COG2205	protein histidine kinase activity
CXD94_RS08900	COG2197	response regulator
CXD94_RS08905	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
CXD94_RS08905	COG3064	Membrane
CXD94_RS08905	COG3210	domain, Protein
CXD94_RS08915	COG3121	Chaperone
CXD94_RS08920	COG3188	usher protein
CXD94_RS08925	COG3539	Fimbrial protein
CXD94_RS08930	COG2831	hemolysin activation secretion protein
CXD94_RS08945	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CXD94_RS08995	COG0668	transmembrane transport
CXD94_RS09015	COG0483	inositol monophosphate 1-phosphatase activity
CXD94_RS09020	COG1253	flavin adenine dinucleotide binding
CXD94_RS09025	COG1968	undecaprenyl-diphosphatase activity
CXD94_RS09030	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CXD94_RS09045	COG0215	cysteine-tRNA ligase activity
CXD94_RS09055	COG0825	malonyl-CoA metabolic process
CXD94_RS09065	COG0037	tRNA processing
CXD94_RS09070	COG0527	aspartate kinase activity
CXD94_RS09095	COG1250	3-hydroxyacyl-CoA dehydrogenase
CXD94_RS09100	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CXD94_RS09100	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CXD94_RS09115	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CXD94_RS09120	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
CXD94_RS09125	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS09135	COG0583	DNA-binding transcription factor activity
CXD94_RS09160	COG3842	ATPase activity
CXD94_RS09170	COG0446	pyridine nucleotide-disulphide oxidoreductase
CXD94_RS09170	COG1902	pentaerythritol trinitrate reductase activity
CXD94_RS09175	COG1414	Transcriptional regulator
CXD94_RS09180	COG1832	CoA-binding protein
CXD94_RS09190	COG0251	oxidation-reduction process
CXD94_RS09215	COG1902	pentaerythritol trinitrate reductase activity
CXD94_RS09225	COG1215	transferase activity, transferring glycosyl groups
CXD94_RS09230	COG0726	polysaccharide deacetylase
CXD94_RS09230	COG1649	PFAM Uncharacterised BCR, COG1649
CXD94_RS09250	COG1846	Transcriptional regulator
CXD94_RS09255	COG2197	response regulator
CXD94_RS09270	COG0166	Belongs to the GPI family
CXD94_RS09275	COG1045	serine acetyltransferase
CXD94_RS09285	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CXD94_RS09290	COG0483	inositol monophosphate 1-phosphatase activity
CXD94_RS09295	COG1012	belongs to the aldehyde dehydrogenase family
CXD94_RS09300	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CXD94_RS09315	COG0210	DNA helicase
CXD94_RS09320	COG0598	Magnesium transport protein CorA
CXD94_RS09330	COG0747	negative chemotaxis
CXD94_RS09335	COG0601	transmembrane transport
CXD94_RS09340	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS09345	COG4172	Belongs to the ABC transporter superfamily
CXD94_RS09350	COG1846	Transcriptional regulator
CXD94_RS09405	COG4964	Belongs to the GSP D family
CXD94_RS09445	COG2204	response regulator
CXD94_RS09460	COG1595	DNA-templated transcription, initiation
CXD94_RS09470	COG3474	cytochrome
CXD94_RS09475	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CXD94_RS09490	COG3384	dioxygenase
CXD94_RS09495	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CXD94_RS09525	COG2885	chlorophyll binding
CXD94_RS09560	COG0697	spore germination
CXD94_RS09565	COG0730	response to heat
CXD94_RS09585	COG0583	DNA-binding transcription factor activity
CXD94_RS09590	COG0427	acetyl-CoA hydrolase
CXD94_RS09645	COG1250	3-hydroxyacyl-CoA dehydrogenase
CXD94_RS09650	COG0154	amidase activity
CXD94_RS09660	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CXD94_RS09675	COG0495	leucyl-tRNA aminoacylation
CXD94_RS09680	COG2814	Major facilitator Superfamily
CXD94_RS09715	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CXD94_RS09720	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CXD94_RS09725	COG2814	Major facilitator Superfamily
CXD94_RS09745	COG4176	ABC-type proline glycine betaine transport system permease component
CXD94_RS09755	COG1942	4-Oxalocrotonate Tautomerase
CXD94_RS09760	COG0183	Belongs to the thiolase family
CXD94_RS09770	COG1802	Transcriptional regulator
CXD94_RS09780	COG1024	Enoyl-CoA hydratase
CXD94_RS09795	COG2032	superoxide dismutase activity
CXD94_RS09810	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
CXD94_RS09835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CXD94_RS09840	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CXD94_RS09850	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CXD94_RS09855	COG0736	holo-[acyl-carrier-protein] synthase activity
CXD94_RS09860	COG1472	Belongs to the glycosyl hydrolase 3 family
CXD94_RS09865	COG0322	excinuclease ABC activity
CXD94_RS09870	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CXD94_RS09880	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CXD94_RS09880	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CXD94_RS09885	COG2224	Isocitrate lyase
CXD94_RS09905	COG0559	Belongs to the binding-protein-dependent transport system permease family
CXD94_RS09915	COG4638	Rieske (2fe-2S)
CXD94_RS09925	COG1024	Enoyl-CoA hydratase
CXD94_RS09935	COG0633	Ferredoxin
CXD94_RS09940	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS09955	COG0183	Belongs to the thiolase family
CXD94_RS09970	COG0583	DNA-binding transcription factor activity
CXD94_RS10000	COG2346	COG2346, Truncated hemoglobins
CXD94_RS10130	COG2207	Transcriptional regulator
CXD94_RS10180	COG1132	(ABC) transporter
CXD94_RS10205	COG0659	secondary active sulfate transmembrane transporter activity
CXD94_RS10235	COG2169	Transcriptional regulator
CXD94_RS10240	COG5507	3-demethylubiquinone-9 3-methyltransferase
CXD94_RS10245	COG0384	phenazine biosynthesis protein PhzF
CXD94_RS10250	COG0583	DNA-binding transcription factor activity
CXD94_RS10255	COG2733	membrane
CXD94_RS10270	COG1012	belongs to the aldehyde dehydrogenase family
CXD94_RS10275	COG3284	Transcriptional regulator
CXD94_RS10300	COG1380	Effector of murein hydrolase LrgA
CXD94_RS10305	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CXD94_RS10305	COG4106	trans-aconitate 2-methyltransferase activity
CXD94_RS10315	COG0156	8-amino-7-oxononanoate synthase activity
CXD94_RS10385	COG1131	(ABC) transporter
CXD94_RS10390	COG0842	Transport permease protein
CXD94_RS10395	COG0628	permease
CXD94_RS10430	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CXD94_RS10440	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CXD94_RS10445	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CXD94_RS10450	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CXD94_RS10455	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CXD94_RS10460	COG0330	HflC and HflK could
CXD94_RS10465	COG0330	HflC and HflK could
CXD94_RS10470	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CXD94_RS10475	COG1923	regulation of RNA biosynthetic process
CXD94_RS10480	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CXD94_RS10485	COG1160	GTP binding
CXD94_RS10490	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CXD94_RS10495	COG2976	Protein conserved in bacteria
CXD94_RS10500	COG0124	histidyl-tRNA synthetase
CXD94_RS10505	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CXD94_RS10515	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CXD94_RS10520	COG0105	UTP biosynthetic process
CXD94_RS10525	COG0525	valine-tRNA ligase activity
CXD94_RS10540	COG0642	Histidine kinase
CXD94_RS10565	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CXD94_RS10570	COG0336	Belongs to the RNA methyltransferase TrmD family
CXD94_RS10575	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CXD94_RS10580	COG0228	four-way junction DNA binding
CXD94_RS10590	COG0425	Belongs to the sulfur carrier protein TusA family
CXD94_RS10595	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CXD94_RS10640	COG0154	amidase activity
CXD94_RS10645	COG4172	Belongs to the ABC transporter superfamily
CXD94_RS10650	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS10655	COG0601	transmembrane transport
CXD94_RS10660	COG0747	negative chemotaxis
CXD94_RS10690	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CXD94_RS10700	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CXD94_RS10720	COG3395	kinase activity
CXD94_RS10735	COG1024	Enoyl-CoA hydratase
CXD94_RS10755	COG0633	Ferredoxin
CXD94_RS10760	COG0443	Heat shock 70 kDa protein
CXD94_RS10765	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CXD94_RS10770	COG0316	Belongs to the HesB IscA family
CXD94_RS10775	COG0822	iron-sulfur transferase activity
CXD94_RS10780	COG1104	cysteine desulfurase activity
CXD94_RS10790	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CXD94_RS10795	COG0556	nucleotide-excision repair
CXD94_RS10805	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CXD94_RS10835	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CXD94_RS10855	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS10860	COG0183	Belongs to the thiolase family
CXD94_RS10870	COG1024	Enoyl-CoA hydratase
CXD94_RS10885	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS10890	COG0583	DNA-binding transcription factor activity
CXD94_RS10895	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CXD94_RS10900	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CXD94_RS10905	COG0740	serine-type endopeptidase activity
CXD94_RS10910	COG0544	peptidyl-prolyl cis-trans isomerase activity
CXD94_RS10920	COG1278	Cold shock
CXD94_RS10930	COG1278	Cold shock
CXD94_RS10965	COG2171	N-acyltransferase activity
CXD94_RS10970	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CXD94_RS10975	COG2890	protein-(glutamine-N5) methyltransferase activity
CXD94_RS10980	COG0488	(ABC) transporter
CXD94_RS10985	COG4771	TonB-dependent receptor
CXD94_RS10990	COG0210	DNA helicase
CXD94_RS11010	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CXD94_RS11015	COG0196	riboflavin kinase activity
CXD94_RS11020	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CXD94_RS11025	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CXD94_RS11030	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CXD94_RS11040	COG1522	sequence-specific DNA binding
CXD94_RS11060	COG2951	lytic endotransglycosylase activity
CXD94_RS11065	COG2833	Protein of unknown function (DUF455)
CXD94_RS11085	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CXD94_RS11085	COG0189	ligase activity
CXD94_RS11090	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CXD94_RS11090	COG1181	Belongs to the D-alanine--D-alanine ligase family
CXD94_RS11095	COG3237	CsbD-like
CXD94_RS11105	COG2823	Periplasmic or secreted lipoprotein
CXD94_RS11130	COG4181	ATPase activity
CXD94_RS11140	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CXD94_RS11145	COG0584	glycerophosphoryl diester phosphodiesterase
CXD94_RS11150	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CXD94_RS11160	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CXD94_RS11160	COG0678	peroxiredoxin activity
CXD94_RS11170	COG0789	Transcriptional regulator
CXD94_RS11175	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CXD94_RS11205	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CXD94_RS11210	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CXD94_RS11220	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CXD94_RS11225	COG2252	PERMEase
CXD94_RS11235	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CXD94_RS11265	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CXD94_RS11270	COG2358	TRAP transporter, solute receptor (TAXI family
CXD94_RS11305	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CXD94_RS11310	COG1366	Belongs to the anti-sigma-factor antagonist family
CXD94_RS11315	COG2172	sigma factor antagonist activity
CXD94_RS11320	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CXD94_RS11330	COG2208	phosphoserine phosphatase activity
CXD94_RS11330	COG2770	Histidine kinase
CXD94_RS11355	COG1595	DNA-templated transcription, initiation
CXD94_RS11370	COG4792	protein secretion
CXD94_RS11375	COG4791	protein targeting
CXD94_RS11380	COG4794	Type iii secretion
CXD94_RS11385	COG4790	Type iii secretion
CXD94_RS11420	COG4669	(LipO)protein
CXD94_RS11485	COG4789	Type iii secretion
CXD94_RS11515	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CXD94_RS11520	COG0840	transmembrane signaling receptor activity
CXD94_RS11525	COG2233	PERMEase
CXD94_RS11555	COG1840	ABC-type Fe3 transport system, periplasmic component
CXD94_RS11560	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CXD94_RS11565	COG1178	ABC-type Fe3 transport system permease component
CXD94_RS11570	COG3842	ATPase activity
CXD94_RS11575	COG0583	DNA-binding transcription factor activity
CXD94_RS11595	COG0501	Belongs to the peptidase M48B family
CXD94_RS11605	COG0697	spore germination
CXD94_RS11615	COG1846	Transcriptional regulator
CXD94_RS11625	COG1566	PFAM secretion protein HlyD family protein
CXD94_RS11630	COG2814	Major facilitator Superfamily
CXD94_RS11635	COG0473	3-isopropylmalate dehydrogenase activity
CXD94_RS11645	COG0747	negative chemotaxis
CXD94_RS11655	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS11670	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CXD94_RS11695	COG1012	belongs to the aldehyde dehydrogenase family
CXD94_RS11705	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CXD94_RS11710	COG1115	amino acid carrier protein
CXD94_RS11715	COG0433	COG0433 Predicted ATPase
CXD94_RS11720	COG0217	transcriptional regulatory protein
CXD94_RS11725	COG0151	Belongs to the GarS family
CXD94_RS11730	COG0408	coproporphyrinogen oxidase activity
CXD94_RS11735	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CXD94_RS11740	COG0799	negative regulation of ribosome biogenesis
CXD94_RS11745	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CXD94_RS11750	COG0424	maF-like protein
CXD94_RS11755	COG3468	outer membrane autotransporter barrel domain protein
CXD94_RS11795	COG1530	ribonuclease E activity
CXD94_RS11800	COG0077	Prephenate dehydratase
CXD94_RS11815	COG1132	(ABC) transporter
CXD94_RS11820	COG0859	PFAM glycosyl transferase family 9
CXD94_RS11845	COG2194	sulfuric ester hydrolase activity
CXD94_RS11850	COG0438	transferase activity, transferring glycosyl groups
CXD94_RS11855	COG0463	Glycosyl transferase, family 2
CXD94_RS11860	COG0726	polysaccharide deacetylase
CXD94_RS11865	COG0438	transferase activity, transferring glycosyl groups
CXD94_RS11880	COG1643	Atp-dependent helicase
CXD94_RS11885	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CXD94_RS11885	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CXD94_RS11890	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
CXD94_RS11900	COG0704	Plays a role in the regulation of phosphate uptake
CXD94_RS11905	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CXD94_RS11910	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS11935	COG1177	transmembrane transport
CXD94_RS11940	COG1176	ABC-type spermidine putrescine transport system, permease component I
CXD94_RS11945	COG3842	ATPase activity
CXD94_RS11950	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CXD94_RS11965	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CXD94_RS11970	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CXD94_RS11980	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CXD94_RS11980	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CXD94_RS11995	COG0372	Belongs to the citrate synthase family
CXD94_RS12000	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CXD94_RS12005	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CXD94_RS12010	COG1053	succinate dehydrogenase
CXD94_RS12015	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CXD94_RS12020	COG2009	succinate dehydrogenase
CXD94_RS12025	COG2188	Transcriptional regulator
CXD94_RS12030	COG0039	L-malate dehydrogenase activity
CXD94_RS12060	COG1981	membrane
CXD94_RS12085	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CXD94_RS12095	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CXD94_RS12125	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CXD94_RS12130	COG0148	phosphopyruvate hydratase activity
CXD94_RS12140	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CXD94_RS12145	COG0504	CTP synthase activity
CXD94_RS12170	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS12180	COG0747	negative chemotaxis
CXD94_RS12185	COG4172	Belongs to the ABC transporter superfamily
CXD94_RS12190	COG1446	asparaginase
CXD94_RS12220	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CXD94_RS12235	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
CXD94_RS12240	COG0697	spore germination
CXD94_RS12245	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CXD94_RS12255	COG3193	protein, possibly involved in utilization of glycolate and propanediol
CXD94_RS12265	COG0791	NLP P60 protein
CXD94_RS12280	COG0583	DNA-binding transcription factor activity
CXD94_RS12295	COG0583	DNA-binding transcription factor activity
CXD94_RS12305	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CXD94_RS12320	COG0670	Belongs to the BI1 family
CXD94_RS12325	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS12340	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CXD94_RS12350	COG1381	Involved in DNA repair and RecF pathway recombination
CXD94_RS12355	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CXD94_RS12360	COG0571	ribonuclease III activity
CXD94_RS12365	COG0681	Belongs to the peptidase S26 family
CXD94_RS12370	COG0481	GTPase activity
CXD94_RS12375	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CXD94_RS12400	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CXD94_RS12405	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CXD94_RS12420	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CXD94_RS12425	COG0416	fatty acid biosynthetic process
CXD94_RS12430	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CXD94_RS12435	COG1399	metal-binding, possibly nucleic acid-binding protein
CXD94_RS12440	COG0424	maF-like protein
CXD94_RS12450	COG3023	N-Acetylmuramoyl-L-alanine amidase
CXD94_RS12465	COG3022	response to hydroperoxide
CXD94_RS12475	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS12490	COG3486	L-lysine 6-monooxygenase (NADPH) activity
CXD94_RS12520	COG2814	Major facilitator Superfamily
CXD94_RS12540	COG3706	GGDEF domain
CXD94_RS12565	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CXD94_RS12570	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CXD94_RS12575	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CXD94_RS12580	COG1674	ftsk spoiiie
CXD94_RS12585	COG0492	ferredoxin-NADP+ reductase activity
CXD94_RS12590	COG1193	negative regulation of DNA recombination
CXD94_RS12610	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CXD94_RS12625	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CXD94_RS12630	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CXD94_RS12635	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
CXD94_RS12645	COG0745	RESPONSE REGULATOR receiver
CXD94_RS12690	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CXD94_RS12710	COG0612	Peptidase, M16
CXD94_RS12720	COG0443	Heat shock 70 kDa protein
CXD94_RS12730	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CXD94_RS12740	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CXD94_RS12745	COG1420	regulation of RNA biosynthetic process
CXD94_RS12750	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CXD94_RS12755	COG0497	DNA recombination
CXD94_RS12760	COG0735	belongs to the Fur family
CXD94_RS12765	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CXD94_RS12770	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CXD94_RS12775	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CXD94_RS12810	COG0446	pyridine nucleotide-disulphide oxidoreductase
CXD94_RS12810	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CXD94_RS12815	COG4311	Sarcosine oxidase, delta subunit
CXD94_RS12820	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CXD94_RS12830	COG0583	DNA-binding transcription factor activity
CXD94_RS12840	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CXD94_RS12865	COG4964	Belongs to the GSP D family
CXD94_RS12925	COG0181	hydroxymethylbilane synthase activity
CXD94_RS12930	COG0861	Integral membrane protein TerC family
CXD94_RS12935	COG0861	Integral membrane protein TerC family
CXD94_RS12940	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CXD94_RS12945	COG0045	succinate-CoA ligase (ADP-forming) activity
CXD94_RS12955	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CXD94_RS12965	COG2137	regulation of response to DNA damage stimulus
CXD94_RS12970	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CXD94_RS12990	COG1024	Enoyl-CoA hydratase
CXD94_RS12990	COG1250	3-hydroxyacyl-CoA dehydrogenase
CXD94_RS12995	COG3842	ATPase activity
CXD94_RS13010	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS13030	COG0583	DNA-binding transcription factor activity
CXD94_RS13035	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS13045	COG2974	May be involved in recombination
CXD94_RS13050	COG0540	Belongs to the ATCase OTCase family
CXD94_RS13115	COG0776	regulation of translation
CXD94_RS13120	COG0072	phenylalanine-tRNA ligase activity
CXD94_RS13120	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CXD94_RS13125	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CXD94_RS13130	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CXD94_RS13135	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CXD94_RS13145	COG0756	dUTP diphosphatase activity
CXD94_RS13155	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CXD94_RS13170	COG0500	methyltransferase
CXD94_RS13185	COG0586	Pfam SNARE associated Golgi protein
CXD94_RS13215	COG1609	Transcriptional regulator
CXD94_RS13220	COG4172	Belongs to the ABC transporter superfamily
CXD94_RS13225	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS13230	COG0601	transmembrane transport
CXD94_RS13235	COG0747	negative chemotaxis
CXD94_RS13250	COG1280	lysine exporter protein (LysE YggA)
CXD94_RS13265	COG2814	Major facilitator Superfamily
CXD94_RS13295	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CXD94_RS13315	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CXD94_RS13350	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS13355	COG1116	anion transmembrane transporter activity
CXD94_RS13365	COG1228	amidohydrolase
CXD94_RS13380	COG0477	Major facilitator Superfamily
CXD94_RS13390	COG3550	peptidyl-serine autophosphorylation
CXD94_RS13405	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CXD94_RS13405	COG0519	Catalyzes the synthesis of GMP from XMP
CXD94_RS13450	COG0420	3'-5' exonuclease activity
CXD94_RS13455	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CXD94_RS13485	COG0395	ABC-type sugar transport system, permease component
CXD94_RS13495	COG3842	ATPase activity
CXD94_RS13520	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS13555	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CXD94_RS13580	COG0602	queuosine metabolic process
CXD94_RS13585	COG0720	synthase
CXD94_RS13590	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
CXD94_RS13595	COG0235	Class ii aldolase
CXD94_RS13625	COG3210	domain, Protein
CXD94_RS13625	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
CXD94_RS13625	COG3064	Membrane
CXD94_RS13630	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CXD94_RS13630	COG0047	phosphoribosylformylglycinamidine synthase activity
CXD94_RS13635	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CXD94_RS13640	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CXD94_RS13640	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CXD94_RS13645	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CXD94_RS13665	COG3539	Fimbrial protein
CXD94_RS13675	COG2050	protein possibly involved in aromatic compounds catabolism
CXD94_RS13680	COG1024	Enoyl-CoA hydratase
CXD94_RS13685	COG1012	belongs to the aldehyde dehydrogenase family
CXD94_RS13705	COG2151	metal-sulfur cluster biosynthetic enzyme
CXD94_RS13710	COG3396	Phenylacetate-CoA oxygenase
CXD94_RS13715	COG3460	Phenylacetate-CoA oxygenase
CXD94_RS13720	COG3396	Phenylacetate-CoA oxygenase
CXD94_RS13725	COG3327	negative regulation of DNA-templated transcription, initiation
CXD94_RS13735	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CXD94_RS13740	COG0501	Belongs to the peptidase M48B family
CXD94_RS13745	COG1162	GTPase activity
CXD94_RS13760	COG0601	transmembrane transport
CXD94_RS13765	COG0747	negative chemotaxis
CXD94_RS13810	COG0668	transmembrane transport
CXD94_RS13815	COG0165	Argininosuccinate lyase
CXD94_RS13835	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CXD94_RS13840	COG0303	'Molybdopterin
CXD94_RS13845	COG0521	Mo-molybdopterin cofactor biosynthetic process
CXD94_RS13860	COG0315	cyclic pyranopterin monophosphate synthase activity
CXD94_RS13870	COG0412	Dienelactone hydrolase
CXD94_RS13880	COG0678	peroxiredoxin activity
CXD94_RS13890	COG0697	spore germination
CXD94_RS13895	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CXD94_RS13920	COG0789	Transcriptional regulator
CXD94_RS13940	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS13950	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CXD94_RS13955	COG1845	cytochrome c oxidase, subunit III
CXD94_RS13960	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CXD94_RS13970	COG0477	Major facilitator Superfamily
CXD94_RS14005	COG1309	transcriptional regulator
CXD94_RS14010	COG2271	Major facilitator Superfamily
CXD94_RS14045	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CXD94_RS14045	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CXD94_RS14045	COG0506	proline dehydrogenase activity
CXD94_RS14055	COG3008	intermembrane lipid transfer
CXD94_RS14055	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CXD94_RS14060	COG2995	paraquat-inducible protein a
CXD94_RS14065	COG0542	response to heat
CXD94_RS14070	COG4953	penicillin-binding protein 1C
CXD94_RS14080	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CXD94_RS14085	COG1278	Cold shock
CXD94_RS14095	COG0183	Belongs to the thiolase family
CXD94_RS14100	COG0038	chloride channel
CXD94_RS14105	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CXD94_RS14110	COG1570	exodeoxyribonuclease VII activity
CXD94_RS14120	COG0811	peptide transport
CXD94_RS14125	COG0848	biopolymer transport protein
CXD94_RS14130	COG1663	tetraacyldisaccharide 4'-kinase activity
CXD94_RS14135	COG2835	tetraacyldisaccharide 4'-kinase activity
CXD94_RS14140	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CXD94_RS14145	COG0563	adenylate kinase activity
CXD94_RS14155	COG0728	peptidoglycan biosynthetic process
CXD94_RS14165	COG0268	Binds directly to 16S ribosomal RNA
CXD94_RS14200	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CXD94_RS14225	COG0436	Aminotransferase
CXD94_RS14230	COG3737	Protein of unknown function (DUF498/DUF598)
CXD94_RS14235	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CXD94_RS14240	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CXD94_RS14245	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CXD94_RS14255	COG0305	Participates in initiation and elongation during chromosome replication
CXD94_RS14265	COG0359	binds to the 23S rRNA
CXD94_RS14270	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CXD94_RS14275	COG2965	DNA replication, synthesis of RNA primer
CXD94_RS14280	COG0360	Binds together with S18 to 16S ribosomal RNA
CXD94_RS14285	COG1469	GTP cyclohydrolase I activity
CXD94_RS14290	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CXD94_RS14295	COG0142	geranyltranstransferase activity
CXD94_RS14300	COG1722	exodeoxyribonuclease VII activity
CXD94_RS14310	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS14330	COG2239	Acts as a magnesium transporter
CXD94_RS14340	COG2855	membrane
CXD94_RS14350	COG1473	amidohydrolase
CXD94_RS14355	COG0318	PFAM AMP-dependent synthetase and ligase
CXD94_RS14380	COG1501	Belongs to the glycosyl hydrolase 31 family
CXD94_RS14385	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CXD94_RS14390	COG2011	ABC-type metal ion transport system permease component
CXD94_RS14410	COG1454	alcohol dehydrogenase
CXD94_RS14440	COG2186	Transcriptional regulator
CXD94_RS14445	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS14465	COG1175	transmembrane transport
CXD94_RS14470	COG0395	ABC-type sugar transport system, permease component
CXD94_RS14475	COG3842	ATPase activity
CXD94_RS14490	COG1653	transport
CXD94_RS14510	COG2818	Glycosylase
CXD94_RS14515	COG2982	Protein involved in outer membrane biogenesis
CXD94_RS14525	COG1309	transcriptional regulator
CXD94_RS14530	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS14590	COG0583	DNA-binding transcription factor activity
CXD94_RS14595	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CXD94_RS14600	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CXD94_RS14615	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS14620	COG0477	Major facilitator Superfamily
CXD94_RS14630	COG0583	DNA-binding transcription factor activity
CXD94_RS14635	COG1448	Aminotransferase
CXD94_RS14640	COG1418	mRNA catabolic process
CXD94_RS14665	COG1063	alcohol dehydrogenase
CXD94_RS14685	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS14695	COG0318	PFAM AMP-dependent synthetase and ligase
CXD94_RS14705	COG1522	sequence-specific DNA binding
CXD94_RS14710	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS14715	COG0307	riboflavin synthase, alpha
CXD94_RS14720	COG0154	amidase activity
CXD94_RS14740	COG2807	transmembrane transport
CXD94_RS14745	COG0590	tRNA wobble adenosine to inosine editing
CXD94_RS14755	COG0583	DNA-binding transcription factor activity
CXD94_RS14790	COG0559	Belongs to the binding-protein-dependent transport system permease family
CXD94_RS14795	COG0251	oxidation-reduction process
CXD94_RS14800	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CXD94_RS14810	COG1414	Transcriptional regulator
CXD94_RS14815	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS14830	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS14845	COG1024	Enoyl-CoA hydratase
CXD94_RS14850	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS14855	COG0154	amidase activity
CXD94_RS14895	COG3909	cytochrome
CXD94_RS14900	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CXD94_RS14905	COG0625	glutathione transferase activity
CXD94_RS14910	COG0730	response to heat
CXD94_RS14915	COG0482	sulfurtransferase activity
CXD94_RS14920	COG0583	DNA-binding transcription factor activity
CXD94_RS14960	COG2819	hydrolase of the alpha beta superfamily
CXD94_RS14965	COG0247	lactate metabolic process
CXD94_RS14970	COG0277	FAD linked oxidase domain protein
CXD94_RS14975	COG0277	FAD linked oxidase domain protein
CXD94_RS14980	COG0277	FAD linked oxidase domain protein
CXD94_RS14985	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
CXD94_RS14985	COG3064	Membrane
CXD94_RS14985	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
CXD94_RS14985	COG3064	Membrane
CXD94_RS14985	COG3210	domain, Protein
CXD94_RS14985	COG3210	domain, Protein
CXD94_RS14990	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CXD94_RS14995	COG0312	modulator of DNA gyrase
CXD94_RS15030	COG1666	GTP binding
CXD94_RS15075	COG3220	belongs to the UPF0276 family
CXD94_RS15095	COG0640	Transcriptional regulator
CXD94_RS15100	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CXD94_RS15105	COG1845	cytochrome c oxidase, subunit III
CXD94_RS15110	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CXD94_RS15120	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
CXD94_RS15155	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS15160	COG0583	DNA-binding transcription factor activity
CXD94_RS15195	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CXD94_RS15195	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CXD94_RS15210	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CXD94_RS15215	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CXD94_RS15225	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CXD94_RS15240	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CXD94_RS15245	COG0316	Belongs to the HesB IscA family
CXD94_RS15255	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CXD94_RS15260	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CXD94_RS15265	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CXD94_RS15270	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
CXD94_RS15275	COG0312	modulator of DNA gyrase
CXD94_RS15280	COG3028	Belongs to the UPF0307 family
CXD94_RS15295	COG1116	anion transmembrane transporter activity
CXD94_RS15300	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS15305	COG1335	isochorismatase
CXD94_RS15310	COG0346	lactoylglutathione lyase activity
CXD94_RS15315	COG0513	Belongs to the DEAD box helicase family
CXD94_RS15320	COG3069	C4-dicarboxylate transmembrane transporter activity
CXD94_RS15325	COG1802	Transcriptional regulator
CXD94_RS15340	COG1042	CoA-binding domain protein
CXD94_RS15340	COG0045	succinate-CoA ligase (ADP-forming) activity
CXD94_RS15340	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CXD94_RS15345	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CXD94_RS15360	COG1522	sequence-specific DNA binding
CXD94_RS15395	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CXD94_RS15400	COG1696	Membrane protein involved in D-alanine export
CXD94_RS15425	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CXD94_RS15440	COG0439	Biotin carboxylase
CXD94_RS15445	COG0511	ligase activity, forming carbon-carbon bonds
CXD94_RS15450	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CXD94_RS15455	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CXD94_RS15460	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CXD94_RS15465	COG3150	esterase
CXD94_RS15470	COG0557	exoribonuclease II activity
CXD94_RS15480	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CXD94_RS15500	COG1522	sequence-specific DNA binding
CXD94_RS15505	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CXD94_RS15510	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS15530	COG0653	protein targeting
CXD94_RS15535	COG0739	heme binding
CXD94_RS15545	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CXD94_RS15550	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CXD94_RS15560	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CXD94_RS15565	COG1181	Belongs to the D-alanine--D-alanine ligase family
CXD94_RS15570	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CXD94_RS15575	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CXD94_RS15585	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CXD94_RS15590	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CXD94_RS15595	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CXD94_RS15605	COG3116	cell division
CXD94_RS15610	COG0275	rRNA processing
CXD94_RS15615	COG2001	Belongs to the MraZ family
CXD94_RS15625	COG0488	(ABC) transporter
CXD94_RS15630	COG0418	dihydroorotase activity
CXD94_RS15635	COG1473	amidohydrolase
CXD94_RS15685	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CXD94_RS15690	COG4654	Cytochrome c, class I
CXD94_RS15695	COG0129	dihydroxy-acid dehydratase activity
CXD94_RS15700	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CXD94_RS15760	COG2084	Dehydrogenase
CXD94_RS15780	COG2096	Adenosyltransferase
CXD94_RS15795	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CXD94_RS15800	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CXD94_RS15810	COG0523	cobalamin synthesis protein
CXD94_RS15815	COG0735	belongs to the Fur family
CXD94_RS15830	COG0803	Belongs to the bacterial solute-binding protein 9 family
CXD94_RS15840	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
CXD94_RS15850	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CXD94_RS15860	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CXD94_RS15865	COG1560	Kdo2-lipid A biosynthetic process
CXD94_RS15875	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CXD94_RS15890	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CXD94_RS15895	COG1950	PFAM Membrane protein of
CXD94_RS15910	COG0583	DNA-binding transcription factor activity
CXD94_RS15920	COG0477	Major facilitator Superfamily
CXD94_RS15935	COG0617	tRNA 3'-terminal CCA addition
CXD94_RS15945	COG0513	Belongs to the DEAD box helicase family
CXD94_RS15950	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CXD94_RS15960	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CXD94_RS15965	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CXD94_RS16040	COG0405	Gamma-glutamyltransferase
CXD94_RS16050	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CXD94_RS16080	COG1309	transcriptional regulator
CXD94_RS16095	COG0745	RESPONSE REGULATOR receiver
CXD94_RS16145	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CXD94_RS16170	COG0582	viral genome integration into host DNA
CXD94_RS16175	COG0012	GTP binding
CXD94_RS16185	COG0193	aminoacyl-tRNA hydrolase activity
CXD94_RS16190	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CXD94_RS16195	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CXD94_RS16205	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CXD94_RS16210	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
CXD94_RS16220	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CXD94_RS16245	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
CXD94_RS16255	COG1368	sulfuric ester hydrolase activity
CXD94_RS16260	COG0642	Histidine kinase
CXD94_RS16265	COG0745	RESPONSE REGULATOR receiver
CXD94_RS16270	COG0277	FAD linked oxidase domain protein
CXD94_RS16285	COG0166	Belongs to the GPI family
CXD94_RS16290	COG0438	transferase activity, transferring glycosyl groups
CXD94_RS16295	COG0438	transferase activity, transferring glycosyl groups
CXD94_RS16310	COG0438	transferase activity, transferring glycosyl groups
CXD94_RS16325	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CXD94_RS16330	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CXD94_RS16335	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
CXD94_RS16345	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CXD94_RS16355	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CXD94_RS16360	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CXD94_RS16370	COG0747	negative chemotaxis
CXD94_RS16375	COG0601	transmembrane transport
CXD94_RS16380	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS16400	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CXD94_RS16405	COG0830	nickel cation binding
CXD94_RS16415	COG0804	urea catabolic process
CXD94_RS16420	COG0832	Belongs to the urease beta subunit family
CXD94_RS16430	COG0831	urea catabolic process
CXD94_RS16435	COG0829	nickel cation binding
CXD94_RS16465	COG2188	Transcriptional regulator
CXD94_RS16490	COG2719	SpoVR family
CXD94_RS16495	COG2718	Belongs to the UPF0229 family
CXD94_RS16515	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS16530	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS16580	COG2030	dehydratase
CXD94_RS16645	COG0328	RNA-DNA hybrid ribonuclease activity
CXD94_RS16650	COG2226	methyltransferase
CXD94_RS16655	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CXD94_RS16660	COG0741	lytic transglycosylase activity
CXD94_RS16660	COG1388	LysM domain
CXD94_RS16680	COG2979	Protein of unknown function (DUF533)
CXD94_RS16715	COG1271	oxidase subunit
CXD94_RS16720	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CXD94_RS16725	COG0850	regulation of cytokinetic process
CXD94_RS16730	COG2894	cell division
CXD94_RS16735	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CXD94_RS16770	COG0601	transmembrane transport
CXD94_RS16780	COG1215	transferase activity, transferring glycosyl groups
CXD94_RS16795	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CXD94_RS16805	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CXD94_RS16825	COG0318	PFAM AMP-dependent synthetase and ligase
CXD94_RS16830	COG2188	Transcriptional regulator
CXD94_RS16835	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CXD94_RS16840	COG2814	Major facilitator Superfamily
CXD94_RS16850	COG0259	pyridoxamine-phosphate oxidase activity
CXD94_RS16855	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CXD94_RS16870	COG0583	DNA-binding transcription factor activity
CXD94_RS16895	COG0134	indole-3-glycerol-phosphate synthase activity
CXD94_RS16900	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CXD94_RS16905	COG0512	Glutamine amidotransferase of anthranilate synthase
CXD94_RS16915	COG0546	phosphoglycolate phosphatase activity
CXD94_RS16920	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CXD94_RS16925	COG2967	ApaG domain
CXD94_RS16930	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CXD94_RS16935	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CXD94_RS16940	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CXD94_RS16945	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CXD94_RS16955	COG0037	tRNA processing
CXD94_RS16965	COG3634	alkyl hydroperoxide reductase activity
CXD94_RS16970	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CXD94_RS16975	COG1024	Enoyl-CoA hydratase
CXD94_RS17000	COG0356	it plays a direct role in the translocation of protons across the membrane
CXD94_RS17010	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CXD94_RS17015	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CXD94_RS17020	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CXD94_RS17025	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CXD94_RS17030	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CXD94_RS17035	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CXD94_RS17045	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CXD94_RS17050	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CXD94_RS17055	COG0210	DNA helicase
CXD94_RS17065	COG2195	Cleaves the N-terminal amino acid of tripeptides
CXD94_RS17075	COG4172	Belongs to the ABC transporter superfamily
CXD94_RS17080	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS17085	COG0601	transmembrane transport
CXD94_RS17105	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CXD94_RS17110	COG1024	Enoyl-CoA hydratase
CXD94_RS17115	COG1024	Enoyl-CoA hydratase
CXD94_RS17170	COG2132	Multicopper oxidase
CXD94_RS17180	COG1024	Enoyl-CoA hydratase
CXD94_RS17180	COG1250	3-hydroxyacyl-CoA dehydrogenase
CXD94_RS17190	COG1414	Transcriptional regulator
CXD94_RS17200	COG0154	amidase activity
CXD94_RS17230	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CXD94_RS17235	COG3568	Endonuclease Exonuclease Phosphatase
CXD94_RS17240	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CXD94_RS17275	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
CXD94_RS17285	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CXD94_RS17300	COG1137	ATPase activity
CXD94_RS17315	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CXD94_RS17320	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CXD94_RS17320	COG2010	Cytochrome c
CXD94_RS17330	COG1660	Displays ATPase and GTPase activities
CXD94_RS17335	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CXD94_RS17370	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS17380	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CXD94_RS17385	COG2890	protein-(glutamine-N5) methyltransferase activity
CXD94_RS17390	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CXD94_RS17395	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CXD94_RS17445	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS17455	COG0183	Belongs to the thiolase family
CXD94_RS17460	COG1522	sequence-specific DNA binding
CXD94_RS17465	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CXD94_RS17485	COG1024	Enoyl-CoA hydratase
CXD94_RS17500	COG0604	alcohol dehydrogenase
CXD94_RS17520	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CXD94_RS17530	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS17535	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS17540	COG0277	FAD linked oxidase domain protein
CXD94_RS17550	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS17575	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CXD94_RS17585	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS17590	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS17595	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS17615	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CXD94_RS17620	COG1024	Enoyl-CoA hydratase
CXD94_RS17625	COG1960	acyl-CoA dehydrogenase activity
CXD94_RS17645	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CXD94_RS17650	COG0022	dehydrogenase e1 component
CXD94_RS17655	COG1024	Enoyl-CoA hydratase
CXD94_RS17660	COG0508	dehydrogenase complex catalyzes the overall conversion of
CXD94_RS17680	COG0683	leucine binding
CXD94_RS17685	COG0559	Belongs to the binding-protein-dependent transport system permease family
CXD94_RS17690	COG0411	ABC transporter
CXD94_RS17700	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CXD94_RS17715	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS17745	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CXD94_RS17750	COG0793	Belongs to the peptidase S41A family
CXD94_RS17755	COG4942	peptidase
CXD94_RS17760	COG0588	phosphoglycerate mutase activity
CXD94_RS17765	COG1054	Belongs to the UPF0176 family
CXD94_RS17770	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CXD94_RS17775	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
CXD94_RS17780	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CXD94_RS17785	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS17800	COG2226	methyltransferase
CXD94_RS17805	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
CXD94_RS17820	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS17825	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CXD94_RS17850	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
CXD94_RS17875	COG1335	isochorismatase
CXD94_RS17880	COG2309	aminopeptidase activity
CXD94_RS17890	COG3473	Maleate cis-trans isomerase
CXD94_RS17900	COG2068	MobA-Related Protein
CXD94_RS17925	COG2204	response regulator
CXD94_RS17930	COG5000	phosphorelay sensor kinase activity
CXD94_RS17940	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CXD94_RS17940	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CXD94_RS17950	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
CXD94_RS17985	COG0583	DNA-binding transcription factor activity
CXD94_RS18005	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CXD94_RS18010	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS18025	COG0758	DNA mediated transformation
CXD94_RS18030	COG1522	sequence-specific DNA binding
CXD94_RS18040	COG0242	peptide deformylase activity
CXD94_RS18055	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CXD94_RS18065	COG0546	phosphoglycolate phosphatase activity
CXD94_RS18085	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CXD94_RS18090	COG1942	4-Oxalocrotonate Tautomerase
CXD94_RS18095	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CXD94_RS18120	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CXD94_RS18140	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CXD94_RS18145	COG1024	Enoyl-CoA hydratase
CXD94_RS18150	COG1414	Transcriptional regulator
CXD94_RS18155	COG0318	PFAM AMP-dependent synthetase and ligase
CXD94_RS18160	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS18205	COG3422	double-strand break repair
CXD94_RS18210	COG0330	HflC and HflK could
CXD94_RS18220	COG0251	oxidation-reduction process
CXD94_RS18270	COG3723	Recombinational DNA repair protein, rece pathway
CXD94_RS18305	COG0582	viral genome integration into host DNA
CXD94_RS18340	COG0706	membrane insertase activity
CXD94_RS18345	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CXD94_RS18350	COG0594	ribonuclease P activity
CXD94_RS18355	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CXD94_RS18360	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CXD94_RS18375	COG1414	Transcriptional regulator
CXD94_RS18380	COG0154	amidase activity
CXD94_RS18395	COG1304	FMN binding
CXD94_RS18450	COG0183	Belongs to the thiolase family
CXD94_RS18455	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CXD94_RS18470	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CXD94_RS18475	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS18485	COG2358	TRAP transporter, solute receptor (TAXI family
CXD94_RS18495	COG1629	transport
CXD94_RS18500	COG2922	Belongs to the Smg family
CXD94_RS18525	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CXD94_RS18530	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS18535	COG1028	Short-chain dehydrogenase reductase Sdr
CXD94_RS18540	COG1012	belongs to the aldehyde dehydrogenase family
CXD94_RS18550	COG0028	Belongs to the TPP enzyme family
CXD94_RS18555	COG1522	sequence-specific DNA binding
CXD94_RS18560	COG3781	membrane
CXD94_RS18570	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CXD94_RS18590	COG4206	TonB-dependent receptor
CXD94_RS18595	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CXD94_RS18600	COG2022	thiamine diphosphate biosynthetic process
CXD94_RS18605	COG0351	phosphomethylpyrimidine kinase
CXD94_RS18610	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CXD94_RS18625	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CXD94_RS18635	COG0628	permease
CXD94_RS18645	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CXD94_RS18660	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CXD94_RS18665	COG0049	tRNA binding
CXD94_RS18670	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CXD94_RS18675	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CXD94_RS18680	COG0051	transcription antitermination factor activity, RNA binding
CXD94_RS18685	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CXD94_RS18690	COG0088	Forms part of the polypeptide exit tunnel
CXD94_RS18695	COG0089	rRNA binding
CXD94_RS18700	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CXD94_RS18705	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CXD94_RS18710	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CXD94_RS18715	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CXD94_RS18720	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CXD94_RS18725	COG0255	Belongs to the universal ribosomal protein uL29 family
CXD94_RS18730	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CXD94_RS18750	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CXD94_RS18755	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CXD94_RS18760	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CXD94_RS18765	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CXD94_RS18770	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CXD94_RS18775	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CXD94_RS18780	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CXD94_RS18785	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CXD94_RS18790	COG1841	ribosomal large subunit assembly
CXD94_RS18795	COG0200	Binds to the 23S rRNA
CXD94_RS18800	COG0201	protein transport
CXD94_RS18805	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CXD94_RS18810	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CXD94_RS18815	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CXD94_RS18820	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CXD94_RS18825	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CXD94_RS18830	COG0202	RNA polymerase activity
CXD94_RS18835	COG0203	ribosomal protein L17
CXD94_RS18840	COG0537	adenosine 5'-monophosphoramidase activity
CXD94_RS18845	COG1324	tolerance protein
CXD94_RS18850	COG4232	protein-disulfide reductase activity
CXD94_RS18865	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CXD94_RS18875	COG1333	cytochrome c biogenesis protein
CXD94_RS18880	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CXD94_RS18895	COG1965	Belongs to the frataxin family
CXD94_RS18905	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CXD94_RS18910	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CXD94_RS18915	COG0232	Belongs to the dGTPase family. Type 2 subfamily
CXD94_RS18930	COG2814	Major facilitator Superfamily
CXD94_RS18935	COG0629	single-stranded DNA binding
CXD94_RS18975	COG0402	S-adenosylhomocysteine deaminase activity
CXD94_RS18985	COG0438	transferase activity, transferring glycosyl groups
CXD94_RS19005	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS19030	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CXD94_RS19055	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CXD94_RS19060	COG1956	GAF domain-containing protein
CXD94_RS19065	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CXD94_RS19080	COG1652	LysM domain
CXD94_RS19095	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CXD94_RS19110	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CXD94_RS19140	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS19155	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS19170	COG1024	Enoyl-CoA hydratase
CXD94_RS19185	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS19190	COG1309	transcriptional regulator
CXD94_RS19195	COG2816	NAD+ diphosphatase activity
CXD94_RS19200	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CXD94_RS19285	COG2814	Major facilitator Superfamily
CXD94_RS19290	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CXD94_RS19310	COG1999	signal sequence binding
CXD94_RS19315	COG0109	protoheme IX farnesyltransferase activity
CXD94_RS19355	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CXD94_RS19375	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CXD94_RS19380	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CXD94_RS19390	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CXD94_RS19395	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
CXD94_RS19405	COG0070	glutamate synthase
CXD94_RS19405	COG0069	glutamate synthase activity
CXD94_RS19405	COG0067	glutamate synthase
CXD94_RS19415	COG3047	cAMP biosynthetic process
CXD94_RS19425	COG1127	ABC transporter
CXD94_RS19430	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CXD94_RS19435	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CXD94_RS19440	COG2853	Lipoprotein
CXD94_RS19455	COG0842	Transport permease protein
CXD94_RS19465	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CXD94_RS19470	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CXD94_RS19475	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CXD94_RS19480	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CXD94_RS19485	COG0131	Imidazoleglycerol-phosphate dehydratase
CXD94_RS19490	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CXD94_RS19495	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CXD94_RS19500	COG0107	imidazoleglycerol-phosphate synthase activity
CXD94_RS19505	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CXD94_RS19510	COG0140	phosphoribosyl-ATP diphosphatase activity
CXD94_RS19515	COG0537	adenosine 5'-monophosphoramidase activity
CXD94_RS19520	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CXD94_RS19525	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CXD94_RS19540	COG3181	Tripartite tricarboxylate transporter family receptor
CXD94_RS19575	COG3702	type iv secretory pathway
CXD94_RS19580	COG3451	type IV secretory pathway VirB4
CXD94_RS19595	COG3736	Type IV secretory pathway, component VirB8
CXD94_RS19600	COG3504	Conjugal transfer protein
CXD94_RS19605	COG2948	multi-organism process
CXD94_RS19610	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
CXD94_RS19620	COG0697	spore germination
CXD94_RS19640	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CXD94_RS19645	COG0747	negative chemotaxis
CXD94_RS19650	COG0601	transmembrane transport
CXD94_RS19655	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CXD94_RS19670	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CXD94_RS19680	COG0494	nUDIX hydrolase
CXD94_RS19725	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
CXD94_RS19730	COG0237	dephospho-CoA kinase activity
CXD94_RS19735	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CXD94_RS19750	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CXD94_RS19755	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CXD94_RS19765	COG0477	Major facilitator Superfamily
CXD94_RS19770	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CXD94_RS19785	COG1126	abc transporter atp-binding protein
CXD94_RS19790	COG0765	amino acid transport
CXD94_RS19795	COG4597	amino acid ABC transporter
CXD94_RS19800	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CXD94_RS19805	COG2884	Cell division ATP-binding protein ftsE
CXD94_RS19810	COG2177	Part of the ABC transporter FtsEX involved in
CXD94_RS19815	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CXD94_RS19825	COG1194	a g-specific adenine glycosylase
CXD94_RS19835	COG2226	methyltransferase
CXD94_RS19845	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS19850	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS19865	COG1024	Enoyl-CoA hydratase
CXD94_RS19885	COG1024	Enoyl-CoA hydratase
CXD94_RS19890	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CXD94_RS19905	COG0753	catalase activity
CXD94_RS19910	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CXD94_RS19915	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CXD94_RS19925	COG2175	clavaminate synthase activity
CXD94_RS19930	COG1473	amidohydrolase
CXD94_RS19935	COG4608	Belongs to the ABC transporter superfamily
CXD94_RS19940	COG0444	Belongs to the ABC transporter superfamily
CXD94_RS19955	COG0747	negative chemotaxis
CXD94_RS19960	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CXD94_RS19995	COG0436	Aminotransferase
CXD94_RS20000	COG1278	Cold shock