locus-tag	class	description
AC880_RS00005	COG0445	tRNA wobble uridine modification
AC880_RS00010	COG0357	Ribosomal RNA small subunit methyltransferase G
AC880_RS00015	COG1192	Involved in chromosome partitioning
AC880_RS00025	COG1475	DNA binding
AC880_RS00030	COG0252	asparaginase activity
AC880_RS00055	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AC880_RS00065	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AC880_RS00075	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AC880_RS00080	COG0081	regulation of translation
AC880_RS00085	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AC880_RS00090	COG0222	ribosome binding
AC880_RS00095	COG0085	RNA polymerase activity
AC880_RS00100	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AC880_RS00140	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS00165	COG1024	Enoyl-CoA hydratase
AC880_RS00185	COG0752	glycyl-tRNA synthetase alpha subunit
AC880_RS00190	COG0751	glycine-tRNA ligase activity
AC880_RS00195	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AC880_RS00200	COG0204	Acyl-transferase
AC880_RS00215	COG0242	peptide deformylase activity
AC880_RS00250	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
AC880_RS00255	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AC880_RS00260	COG2813	Specifically methylates the guanine in position
AC880_RS00260	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AC880_RS00275	COG2223	nitrite transmembrane transporter activity
AC880_RS00285	COG1794	racemase activity, acting on amino acids and derivatives
AC880_RS00290	COG1126	abc transporter atp-binding protein
AC880_RS00295	COG0765	amino acid transport
AC880_RS00300	COG0765	amino acid transport
AC880_RS00305	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS00370	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AC880_RS00400	COG0326	Molecular chaperone. Has ATPase activity
AC880_RS00405	COG0625	glutathione transferase activity
AC880_RS00420	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AC880_RS00425	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AC880_RS00455	COG0438	transferase activity, transferring glycosyl groups
AC880_RS00460	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AC880_RS00465	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AC880_RS00495	COG0859	PFAM glycosyl transferase family 9
AC880_RS00510	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AC880_RS00520	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AC880_RS00525	COG1127	ABC transporter
AC880_RS00545	COG1686	Belongs to the peptidase S11 family
AC880_RS00555	COG2921	Belongs to the UPF0250 family
AC880_RS00560	COG0321	lipoyl(octanoyl) transferase activity
AC880_RS00565	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AC880_RS00600	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AC880_RS00610	COG0018	arginyl-trna synthetase
AC880_RS00630	COG0395	ABC-type sugar transport system, permease component
AC880_RS00635	COG1175	transmembrane transport
AC880_RS00640	COG1653	transport
AC880_RS00645	COG3842	ATPase activity
AC880_RS00650	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AC880_RS00660	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AC880_RS00680	COG1609	Transcriptional regulator
AC880_RS00690	COG0154	amidase activity
AC880_RS00695	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AC880_RS00705	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AC880_RS00715	COG0583	DNA-binding transcription factor activity
AC880_RS00730	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AC880_RS00735	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AC880_RS00750	COG1802	Transcriptional regulator
AC880_RS00765	COG1024	Enoyl-CoA hydratase
AC880_RS00775	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS00790	COG1984	allophanate hydrolase subunit 2
AC880_RS00795	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AC880_RS00805	COG0583	DNA-binding transcription factor activity
AC880_RS00810	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AC880_RS00820	COG5002	protein histidine kinase activity
AC880_RS00830	COG5002	protein histidine kinase activity
AC880_RS00835	COG0745	RESPONSE REGULATOR receiver
AC880_RS00840	COG2226	methyltransferase
AC880_RS00855	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AC880_RS00875	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AC880_RS00885	COG0513	Belongs to the DEAD box helicase family
AC880_RS00890	COG1280	lysine exporter protein (LysE YggA)
AC880_RS00895	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AC880_RS00930	COG1054	Belongs to the UPF0176 family
AC880_RS00935	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AC880_RS00935	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AC880_RS00945	COG0489	protein tyrosine kinase activity
AC880_RS00960	COG0717	Belongs to the dCTP deaminase family
AC880_RS00990	COG2081	HI0933 family
AC880_RS01000	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AC880_RS01010	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AC880_RS01015	COG0509	glycine decarboxylation via glycine cleavage system
AC880_RS01020	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AC880_RS01020	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AC880_RS01060	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AC880_RS01075	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AC880_RS01085	COG1414	Transcriptional regulator
AC880_RS01090	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS01095	COG2031	fatty acid transporter
AC880_RS01100	COG1250	3-hydroxyacyl-CoA dehydrogenase
AC880_RS01110	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AC880_RS01115	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AC880_RS01125	COG4257	antibiotic catabolic process
AC880_RS01145	COG1012	belongs to the aldehyde dehydrogenase family
AC880_RS01150	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AC880_RS01155	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AC880_RS01180	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS01190	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AC880_RS01205	COG2188	Transcriptional regulator
AC880_RS01210	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AC880_RS01235	COG0617	tRNA 3'-terminal CCA addition
AC880_RS01250	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AC880_RS01255	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AC880_RS01260	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AC880_RS01265	COG0586	Pfam SNARE associated Golgi protein
AC880_RS01270	COG0860	N-Acetylmuramoyl-L-alanine amidase
AC880_RS01275	COG0802	atpase or kinase
AC880_RS01280	COG0114	fumarate hydratase activity
AC880_RS01290	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS01300	COG0405	Gamma-glutamyltransferase
AC880_RS01305	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS01315	COG1960	acyl-CoA dehydrogenase activity
AC880_RS01340	COG1294	oxidase, subunit
AC880_RS01350	COG4988	ABC transporter
AC880_RS01355	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AC880_RS01360	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AC880_RS01375	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AC880_RS01405	COG2969	positive regulation of protein catabolic process
AC880_RS01410	COG0625	glutathione transferase activity
AC880_RS01415	COG2857	Cytochrome c1
AC880_RS01420	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AC880_RS01425	COG0723	plastoquinol--plastocyanin reductase activity
AC880_RS01430	COG1970	mechanosensitive ion channel activity
AC880_RS01435	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AC880_RS01450	COG2808	Putative FMN-binding domain
AC880_RS01455	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AC880_RS01460	COG0747	negative chemotaxis
AC880_RS01465	COG0657	acetylesterase activity
AC880_RS01475	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AC880_RS01480	COG2207	Transcriptional regulator
AC880_RS01485	COG0129	dihydroxy-acid dehydratase activity
AC880_RS01490	COG2814	Major facilitator Superfamily
AC880_RS01495	COG0583	DNA-binding transcription factor activity
AC880_RS01505	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
AC880_RS01575	COG1024	Enoyl-CoA hydratase
AC880_RS01580	COG1960	acyl-CoA dehydrogenase activity
AC880_RS01605	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AC880_RS01610	COG0352	thiamine-phosphate diphosphorylase activity
AC880_RS01625	COG1678	Uncharacterized ACR, COG1678
AC880_RS01630	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AC880_RS01635	COG0540	Belongs to the ATCase OTCase family
AC880_RS01650	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AC880_RS01660	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AC880_RS01695	COG1234	tRNA 3'-trailer cleavage
AC880_RS01715	COG3064	Membrane
AC880_RS01745	COG1683	Conserved Protein
AC880_RS01750	COG1120	ATPase activity
AC880_RS01755	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AC880_RS01760	COG4558	Periplasmic binding protein
AC880_RS01765	COG3720	iron ion transport
AC880_RS01775	COG3712	iron ion homeostasis
AC880_RS01780	COG1595	DNA-templated transcription, initiation
AC880_RS01815	COG1802	Transcriptional regulator
AC880_RS01825	COG3069	C4-dicarboxylate transmembrane transporter activity
AC880_RS01835	COG1012	belongs to the aldehyde dehydrogenase family
AC880_RS01870	COG2860	membrane
AC880_RS01875	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AC880_RS01880	COG0708	Exodeoxyribonuclease III
AC880_RS01885	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AC880_RS01890	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AC880_RS01895	COG0154	amidase activity
AC880_RS01900	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AC880_RS01905	COG1077	Cell shape determining protein MreB Mrl
AC880_RS01910	COG1792	Involved in formation and maintenance of cell shape
AC880_RS01920	COG0768	penicillin binding
AC880_RS01925	COG0772	Belongs to the SEDS family
AC880_RS01930	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
AC880_RS01935	COG0471	metal ion transport
AC880_RS01940	COG1309	transcriptional regulator
AC880_RS01950	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AC880_RS01965	COG2823	Periplasmic or secreted lipoprotein
AC880_RS01970	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AC880_RS01985	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AC880_RS02005	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS02015	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS02035	COG0492	ferredoxin-NADP+ reductase activity
AC880_RS02045	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS02050	COG1024	Enoyl-CoA hydratase
AC880_RS02050	COG1250	3-hydroxyacyl-CoA dehydrogenase
AC880_RS02055	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS02060	COG0028	Belongs to the TPP enzyme family
AC880_RS02085	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS02095	COG0697	spore germination
AC880_RS02125	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AC880_RS02130	COG0463	Glycosyl transferase, family 2
AC880_RS02150	COG0786	glutamate:sodium symporter activity
AC880_RS02160	COG2031	fatty acid transporter
AC880_RS02175	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AC880_RS02180	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AC880_RS02190	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AC880_RS02205	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AC880_RS02215	COG1285	pathogenesis
AC880_RS02220	COG1253	flavin adenine dinucleotide binding
AC880_RS02225	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS02230	COG1024	Enoyl-CoA hydratase
AC880_RS02235	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS02240	COG0583	DNA-binding transcription factor activity
AC880_RS02245	COG1960	acyl-CoA dehydrogenase activity
AC880_RS02255	COG0183	Belongs to the thiolase family
AC880_RS02275	COG0583	DNA-binding transcription factor activity
AC880_RS02280	COG1278	Cold shock
AC880_RS02290	COG1802	Transcriptional regulator
AC880_RS02295	COG1012	belongs to the aldehyde dehydrogenase family
AC880_RS02300	COG2031	fatty acid transporter
AC880_RS02305	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AC880_RS02305	COG1017	nitric oxide dioxygenase activity
AC880_RS02310	COG0251	oxidation-reduction process
AC880_RS02330	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS02340	COG0583	DNA-binding transcription factor activity
AC880_RS02345	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS02355	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AC880_RS02360	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AC880_RS02365	COG0546	phosphoglycolate phosphatase activity
AC880_RS02375	COG1530	ribonuclease E activity
AC880_RS02390	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AC880_RS02395	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AC880_RS02400	COG0159	tryptophan synthase activity
AC880_RS02405	COG0133	tryptophan synthase activity
AC880_RS02415	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AC880_RS02420	COG3228	Belongs to the MtfA family
AC880_RS02430	COG0251	oxidation-reduction process
AC880_RS02435	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AC880_RS02440	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AC880_RS02455	COG2878	Part of a membrane complex involved in electron transport
AC880_RS02460	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AC880_RS02495	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AC880_RS02515	COG1268	BioY protein
AC880_RS02520	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
AC880_RS02525	COG1122	ATPase activity
AC880_RS02530	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AC880_RS02545	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AC880_RS02550	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AC880_RS02560	COG1196	nuclear chromosome segregation
AC880_RS02565	COG0477	Major facilitator Superfamily
AC880_RS02570	COG1573	uracil-dna glycosylase
AC880_RS02575	COG1214	PFAM Peptidase M22, glycoprotease
AC880_RS02600	COG0450	alkyl hydroperoxide reductase
AC880_RS02605	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AC880_RS02615	COG2223	nitrite transmembrane transporter activity
AC880_RS02625	COG2186	Transcriptional regulator
AC880_RS02645	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AC880_RS02655	COG0583	DNA-binding transcription factor activity
AC880_RS02665	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AC880_RS02670	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AC880_RS02675	COG0137	argininosuccinate synthase activity
AC880_RS02680	COG3158	transport of potassium into the cell
AC880_RS02685	COG0642	Histidine kinase
AC880_RS02715	COG0776	regulation of translation
AC880_RS02720	COG3128	pkhd-type hydroxylase
AC880_RS02730	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AC880_RS02735	COG0557	exoribonuclease II activity
AC880_RS02760	COG0679	Auxin Efflux Carrier
AC880_RS02765	COG2391	methyltransferase activity
AC880_RS02770	COG0069	glutamate synthase activity
AC880_RS02780	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AC880_RS02790	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
AC880_RS02795	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AC880_RS02830	COG3706	GGDEF domain
AC880_RS02850	COG1053	succinate dehydrogenase
AC880_RS02855	COG0583	DNA-binding transcription factor activity
AC880_RS02865	COG1053	succinate dehydrogenase
AC880_RS02885	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AC880_RS02890	COG0459	protein refolding
AC880_RS02895	COG3468	outer membrane autotransporter barrel domain protein
AC880_RS02910	COG1252	NADH dehydrogenase
AC880_RS02915	COG0284	orotidine-5'-phosphate decarboxylase activity
AC880_RS02920	COG1058	Belongs to the CinA family
AC880_RS02920	COG1546	Belongs to the CinA family
AC880_RS02925	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AC880_RS02935	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AC880_RS02940	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AC880_RS02975	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
AC880_RS02980	COG3639	organic phosphonate transmembrane transporter activity
AC880_RS02985	COG3639	organic phosphonate transmembrane transporter activity
AC880_RS03005	COG0742	ribosomal rna small subunit methyltransferase
AC880_RS03010	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AC880_RS03015	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AC880_RS03020	COG3135	benzoate transporter
AC880_RS03035	COG0640	Transcriptional regulator
AC880_RS03065	COG4172	Belongs to the ABC transporter superfamily
AC880_RS03070	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS03075	COG0601	transmembrane transport
AC880_RS03085	COG0280	phosphate acetyltransferase
AC880_RS03085	COG0281	malic enzyme
AC880_RS03145	COG0583	DNA-binding transcription factor activity
AC880_RS03155	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AC880_RS03160	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AC880_RS03165	COG0167	dihydroorotate dehydrogenase activity
AC880_RS03185	COG1414	Transcriptional regulator
AC880_RS03190	COG1058	Belongs to the CinA family
AC880_RS03190	COG1546	Belongs to the CinA family
AC880_RS03210	COG0513	Belongs to the DEAD box helicase family
AC880_RS03240	COG0429	hydrolase of the alpha beta-hydrolase fold
AC880_RS03245	COG4783	chaperone-mediated protein folding
AC880_RS03260	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AC880_RS03285	COG0006	proline dipeptidase activity
AC880_RS03295	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AC880_RS03315	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AC880_RS03320	COG0632	four-way junction helicase activity
AC880_RS03335	COG2255	four-way junction helicase activity
AC880_RS03340	COG0514	ATP-dependent DNA helicase (RecQ)
AC880_RS03355	COG0288	reversible hydration of carbon dioxide
AC880_RS03360	COG0154	amidase activity
AC880_RS03370	COG4211	Belongs to the binding-protein-dependent transport system permease family
AC880_RS03400	COG1464	Belongs to the NlpA lipoprotein family
AC880_RS03545	COG1196	nuclear chromosome segregation
AC880_RS03615	COG2135	peptidase activity
AC880_RS03630	COG0494	nUDIX hydrolase
AC880_RS03635	COG0442	prolyl-tRNA aminoacylation
AC880_RS03640	COG0824	Thioesterase
AC880_RS03645	COG0811	peptide transport
AC880_RS03650	COG0848	biopolymer transport protein
AC880_RS03660	COG0823	Involved in the tonB-independent uptake of proteins
AC880_RS03675	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AC880_RS03680	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
AC880_RS03715	COG0700	Nucleoside recognition
AC880_RS03720	COG0469	pyruvate kinase activity
AC880_RS03725	COG1929	Belongs to the glycerate kinase type-1 family
AC880_RS03730	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AC880_RS03735	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AC880_RS03740	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AC880_RS03750	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AC880_RS03760	COG2154	pterin-4-alpha-carbinolamine dehydratase
AC880_RS03785	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AC880_RS03790	COG0154	amidase activity
AC880_RS03800	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS03805	COG0601	transmembrane transport
AC880_RS03810	COG0747	negative chemotaxis
AC880_RS03830	COG0019	diaminopimelate decarboxylase activity
AC880_RS03845	COG2353	YceI-like domain
AC880_RS03850	COG4774	siderophore transport
AC880_RS03855	COG3712	iron ion homeostasis
AC880_RS03895	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AC880_RS03900	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AC880_RS03905	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AC880_RS03910	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AC880_RS03920	COG0142	geranyltranstransferase activity
AC880_RS03930	COG0583	DNA-binding transcription factor activity
AC880_RS03940	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
AC880_RS03945	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AC880_RS03960	COG2994	toxin metabolic process
AC880_RS03970	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
AC880_RS03975	COG2274	protein secretion by the type I secretion system
AC880_RS03980	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AC880_RS03985	COG1538	Outer membrane efflux protein
AC880_RS04000	COG0765	amino acid transport
AC880_RS04005	COG0765	amino acid transport
AC880_RS04010	COG1126	abc transporter atp-binding protein
AC880_RS04030	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS04040	COG1802	Transcriptional regulator
AC880_RS04050	COG1802	Transcriptional regulator
AC880_RS04060	COG0318	PFAM AMP-dependent synthetase and ligase
AC880_RS04070	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS04090	COG0028	Belongs to the TPP enzyme family
AC880_RS04110	COG0308	aminopeptidase N
AC880_RS04115	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AC880_RS04125	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AC880_RS04130	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
AC880_RS04135	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AC880_RS04140	COG0560	Phosphoserine phosphatase
AC880_RS04145	COG0583	DNA-binding transcription factor activity
AC880_RS04150	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS04155	COG0028	Belongs to the TPP enzyme family
AC880_RS04170	COG4774	siderophore transport
AC880_RS04175	COG4774	siderophore transport
AC880_RS04185	COG1007	ATP synthesis coupled electron transport
AC880_RS04200	COG0713	ATP synthesis coupled electron transport
AC880_RS04210	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AC880_RS04215	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AC880_RS04220	COG1034	ATP synthesis coupled electron transport
AC880_RS04230	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AC880_RS04235	COG0649	NAD binding
AC880_RS04240	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AC880_RS04245	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AC880_RS04250	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AC880_RS04255	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AC880_RS04285	COG0671	phosphoesterase, PA-phosphatase related
AC880_RS04295	COG1597	lipid kinase activity
AC880_RS04300	COG0583	DNA-binding transcription factor activity
AC880_RS04305	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AC880_RS04315	COG1733	regulation of RNA biosynthetic process
AC880_RS04320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AC880_RS04325	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AC880_RS04340	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
AC880_RS04360	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AC880_RS04380	COG3608	succinylglutamate desuccinylase aspartoacylase
AC880_RS04385	COG0626	cystathionine gamma-synthase activity
AC880_RS04390	COG0583	DNA-binding transcription factor activity
AC880_RS04425	COG3799	methylaspartate ammonia-lyase activity
AC880_RS04435	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AC880_RS04445	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AC880_RS04450	COG0149	triose-phosphate isomerase activity
AC880_RS04470	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AC880_RS04485	COG1185	polyribonucleotide nucleotidyltransferase activity
AC880_RS04490	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AC880_RS04505	COG1183	phosphatidylcholine synthase activity
AC880_RS04510	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AC880_RS04515	COG0440	acetolactate synthase activity
AC880_RS04520	COG0028	Belongs to the TPP enzyme family
AC880_RS04535	COG5265	(ABC) transporter
AC880_RS04540	COG0500	methyltransferase
AC880_RS04560	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
AC880_RS04580	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
AC880_RS04590	COG0511	ligase activity, forming carbon-carbon bonds
AC880_RS04625	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AC880_RS04670	COG5265	(ABC) transporter
AC880_RS04680	COG0667	Aldo Keto reductase
AC880_RS04695	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AC880_RS04735	COG0583	DNA-binding transcription factor activity
AC880_RS04760	COG2814	Major facilitator Superfamily
AC880_RS04770	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AC880_RS04785	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AC880_RS04795	COG0287	Prephenate dehydrogenase
AC880_RS04800	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AC880_RS04805	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AC880_RS04825	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AC880_RS04830	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
AC880_RS04835	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AC880_RS04840	COG1596	polysaccharide export
AC880_RS04840	COG1555	photosystem II stabilization
AC880_RS04855	COG2951	lytic endotransglycosylase activity
AC880_RS04860	COG0123	including yeast histone deacetylase and acetoin utilization protein
AC880_RS04875	COG1960	acyl-CoA dehydrogenase activity
AC880_RS04880	COG0450	alkyl hydroperoxide reductase
AC880_RS04895	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AC880_RS04900	COG4208	sulfate ABC transporter
AC880_RS04905	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AC880_RS04935	COG0335	large ribosomal subunit rRNA binding
AC880_RS04950	COG0667	Aldo Keto reductase
AC880_RS04960	COG2814	Major facilitator Superfamily
AC880_RS04965	COG3161	chorismate lyase activity
AC880_RS04970	COG1187	pseudouridine synthase activity
AC880_RS04980	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AC880_RS05000	COG1999	signal sequence binding
AC880_RS05005	COG0339	signal peptide processing
AC880_RS05010	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AC880_RS05015	COG4566	intracellular signal transduction
AC880_RS05025	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
AC880_RS05030	COG0508	dehydrogenase complex catalyzes the overall conversion of
AC880_RS05035	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AC880_RS05040	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AC880_RS05050	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AC880_RS05055	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AC880_RS05060	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AC880_RS05065	COG0126	phosphoglycerate kinase activity
AC880_RS05070	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AC880_RS05075	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AC880_RS05090	COG0625	glutathione transferase activity
AC880_RS05125	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AC880_RS05135	COG0521	Mo-molybdopterin cofactor biosynthetic process
AC880_RS05145	COG0739	heme binding
AC880_RS05155	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AC880_RS05195	COG0745	RESPONSE REGULATOR receiver
AC880_RS05210	COG0840	transmembrane signaling receptor activity
AC880_RS05220	COG2201	protein-glutamate methylesterase activity
AC880_RS05225	COG0745	RESPONSE REGULATOR receiver
AC880_RS05230	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AC880_RS05255	COG0667	Aldo Keto reductase
AC880_RS05265	COG4535	Mg2 and Co2 transporter CorC
AC880_RS05270	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AC880_RS05275	COG1702	phosphate starvation-inducible protein PhoH
AC880_RS05280	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AC880_RS05295	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AC880_RS05300	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AC880_RS05305	COG1862	Preprotein translocase
AC880_RS05310	COG0343	queuine tRNA-ribosyltransferase activity
AC880_RS05315	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AC880_RS05320	COG2027	D-alanyl-D-alanine carboxypeptidase
AC880_RS05325	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AC880_RS05335	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AC880_RS05340	COG3468	outer membrane autotransporter barrel domain protein
AC880_RS05345	COG1648	precorrin-2 dehydrogenase activity
AC880_RS05345	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AC880_RS05370	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AC880_RS05375	COG0741	lytic transglycosylase activity
AC880_RS05380	COG0436	Aminotransferase
AC880_RS05390	COG0281	malic enzyme
AC880_RS05390	COG0280	phosphate acetyltransferase
AC880_RS05400	COG2732	(Barnase) inhibitor
AC880_RS05415	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AC880_RS05440	COG0248	Ppx GppA phosphatase
AC880_RS05450	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AC880_RS05460	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AC880_RS05465	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AC880_RS05470	COG1534	Rna-binding protein
AC880_RS05500	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AC880_RS05515	COG1295	ribonuclease BN
AC880_RS05525	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AC880_RS05530	COG0745	RESPONSE REGULATOR receiver
AC880_RS05535	COG2205	protein histidine kinase activity
AC880_RS05570	COG1022	Amp-dependent synthetase and ligase
AC880_RS05585	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AC880_RS05590	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS05600	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AC880_RS05615	COG1136	(ABC) transporter
AC880_RS05620	COG0084	hydrolase, TatD family'
AC880_RS05650	COG2333	competence protein COMEC
AC880_RS05650	COG0658	competence protein
AC880_RS05660	COG0613	PHP domain protein
AC880_RS05680	COG3539	Fimbrial protein
AC880_RS05685	COG0281	malic enzyme
AC880_RS05685	COG0280	phosphate acetyltransferase
AC880_RS05695	COG1522	sequence-specific DNA binding
AC880_RS05705	COG0567	Dehydrogenase, E1 component
AC880_RS05710	COG0508	dehydrogenase complex catalyzes the overall conversion of
AC880_RS05715	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AC880_RS05720	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AC880_RS05725	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS05730	COG0583	DNA-binding transcription factor activity
AC880_RS05740	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS05765	COG0180	Tryptophanyl-tRNA synthetase
AC880_RS05770	COG2183	response to ionizing radiation
AC880_RS05775	COG1199	ATP-dependent helicase activity
AC880_RS05785	COG0564	pseudouridine synthase activity
AC880_RS05795	COG3243	poly(R)-hydroxyalkanoic acid synthase
AC880_RS05800	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS05805	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
AC880_RS05820	COG0672	)-iron permease
AC880_RS05860	COG0583	DNA-binding transcription factor activity
AC880_RS05870	COG2814	Major facilitator Superfamily
AC880_RS05885	COG1619	proteins homologs of microcin C7 resistance protein MccF
AC880_RS05900	COG2084	Dehydrogenase
AC880_RS05905	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS05930	COG2988	succinylglutamate desuccinylase activity
AC880_RS05960	COG0765	amino acid transport
AC880_RS05965	COG0765	amino acid transport
AC880_RS05970	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS06005	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AC880_RS06010	COG1595	DNA-templated transcription, initiation
AC880_RS06020	COG3530	Putative quorum-sensing-regulated virulence factor
AC880_RS06025	COG0494	nUDIX hydrolase
AC880_RS06040	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AC880_RS06045	COG0542	response to heat
AC880_RS06060	COG3468	outer membrane autotransporter barrel domain protein
AC880_RS06065	COG3468	outer membrane autotransporter barrel domain protein
AC880_RS06075	COG5441	Belongs to the UPF0261 family
AC880_RS06080	COG5564	TIM-barrel signal transduction protein
AC880_RS06095	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
AC880_RS06110	COG1477	protein flavinylation
AC880_RS06130	COG1131	(ABC) transporter
AC880_RS06135	COG0842	Transport permease protein
AC880_RS06145	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AC880_RS06150	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
AC880_RS06150	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
AC880_RS06155	COG1562	ergosterol biosynthetic process
AC880_RS06160	COG1562	ergosterol biosynthetic process
AC880_RS06165	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AC880_RS06170	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS06190	COG2304	oxidoreductase activity
AC880_RS06210	COG0534	Mate efflux family protein
AC880_RS06220	COG0254	rRNA binding
AC880_RS06225	COG3483	tryptophan 2,3-dioxygenase activity
AC880_RS06230	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
AC880_RS06235	COG2003	Belongs to the UPF0758 family
AC880_RS06240	COG1047	Peptidyl-prolyl cis-trans
AC880_RS06245	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AC880_RS06250	COG0625	glutathione transferase activity
AC880_RS06270	COG0523	cobalamin synthesis protein
AC880_RS06280	COG0583	DNA-binding transcription factor activity
AC880_RS06290	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AC880_RS06295	COG1187	pseudouridine synthase activity
AC880_RS06300	COG0779	Required for maturation of 30S ribosomal subunits
AC880_RS06305	COG2251	uridine kinase activity
AC880_RS06305	COG0195	Participates in both transcription termination and antitermination
AC880_RS06310	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AC880_RS06315	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AC880_RS06320	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AC880_RS06340	COG1611	Belongs to the LOG family
AC880_RS06355	COG0412	Dienelactone hydrolase
AC880_RS06360	COG1283	sodium-dependent phosphate transmembrane transporter activity
AC880_RS06365	COG1760	l-serine dehydratase
AC880_RS06370	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AC880_RS06375	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AC880_RS06385	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AC880_RS06410	COG2311	Membrane
AC880_RS06420	COG0697	spore germination
AC880_RS06435	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AC880_RS06450	COG0559	Belongs to the binding-protein-dependent transport system permease family
AC880_RS06465	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AC880_RS06475	COG1653	transport
AC880_RS06480	COG1175	transmembrane transport
AC880_RS06485	COG0395	ABC-type sugar transport system, permease component
AC880_RS06490	COG3842	ATPase activity
AC880_RS06515	COG2363	Small membrane protein
AC880_RS06530	COG1464	Belongs to the NlpA lipoprotein family
AC880_RS06540	COG0688	phosphatidylethanolamine metabolic process
AC880_RS06565	COG0625	glutathione transferase activity
AC880_RS06570	COG0386	Belongs to the glutathione peroxidase family
AC880_RS06590	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS06620	COG2259	Doxx family
AC880_RS06635	COG0667	Aldo Keto reductase
AC880_RS06665	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
AC880_RS06685	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AC880_RS06695	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AC880_RS06735	COG0392	lysyltransferase activity
AC880_RS06750	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AC880_RS06755	COG3568	Endonuclease Exonuclease Phosphatase
AC880_RS06765	COG1695	Transcriptional regulator
AC880_RS06785	COG0583	DNA-binding transcription factor activity
AC880_RS06800	COG1802	Transcriptional regulator
AC880_RS06810	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS06820	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS06835	COG0066	3-isopropylmalate dehydratase activity
AC880_RS06845	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS06850	COG4948	Mandelate Racemase Muconate Lactonizing
AC880_RS06865	COG1126	abc transporter atp-binding protein
AC880_RS06870	COG0765	amino acid transport
AC880_RS06875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS06895	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AC880_RS06920	COG1815	bacterial-type flagellum-dependent cell motility
AC880_RS06925	COG1558	bacterial-type flagellum-dependent cell motility
AC880_RS06935	COG1749	Flagellar hook protein flgE
AC880_RS06950	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AC880_RS06955	COG1706	bacterial-type flagellum-dependent cell motility
AC880_RS06965	COG1256	bacterial-type flagellum assembly
AC880_RS06975	COG0840	transmembrane signaling receptor activity
AC880_RS06980	COG0840	transmembrane signaling receptor activity
AC880_RS06985	COG0840	transmembrane signaling receptor activity
AC880_RS07005	COG1338	Plays a role in the flagellum-specific transport system
AC880_RS07025	COG1580	Controls the rotational direction of flagella during chemotaxis
AC880_RS07050	COG1157	protein secretion by the type III secretion system
AC880_RS07055	COG1317	bacterial-type flagellum organization
AC880_RS07060	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AC880_RS07070	COG1677	Flagellar hook-basal body complex protein FliE
AC880_RS07080	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AC880_RS07115	COG0285	dihydrofolate synthase activity
AC880_RS07145	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
AC880_RS07150	COG0024	Methionine aminopeptidase
AC880_RS07155	COG0052	Belongs to the universal ribosomal protein uS2 family
AC880_RS07160	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AC880_RS07165	COG0528	UMP kinase activity
AC880_RS07170	COG0233	cytoplasmic translational termination
AC880_RS07175	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AC880_RS07185	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
AC880_RS07190	COG0750	zinc metalloprotease
AC880_RS07195	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AC880_RS07200	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
AC880_RS07205	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AC880_RS07210	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AC880_RS07220	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AC880_RS07225	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AC880_RS07230	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AC880_RS07235	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AC880_RS07245	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AC880_RS07245	COG0519	Catalyzes the synthesis of GMP from XMP
AC880_RS07260	COG0330	HflC and HflK could
AC880_RS07265	COG3706	GGDEF domain
AC880_RS07270	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AC880_RS07280	COG2867	negative regulation of translational initiation
AC880_RS07290	COG1960	acyl-CoA dehydrogenase activity
AC880_RS07295	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
AC880_RS07325	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AC880_RS07330	COG0505	Belongs to the CarA family
AC880_RS07335	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AC880_RS07345	COG0406	alpha-ribazole phosphatase activity
AC880_RS07355	COG3842	ATPase activity
AC880_RS07375	COG5001	Diguanylate cyclase
AC880_RS07380	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AC880_RS07390	COG1763	Mo-molybdopterin cofactor biosynthetic process
AC880_RS07395	COG0303	'Molybdopterin
AC880_RS07400	COG0746	molybdenum cofactor guanylyltransferase activity
AC880_RS07405	COG0489	protein tyrosine kinase activity
AC880_RS07435	COG3383	formate dehydrogenase (NAD+) activity
AC880_RS07435	COG0243	molybdopterin cofactor binding
AC880_RS07440	COG0437	4 iron, 4 sulfur cluster binding
AC880_RS07470	COG1122	ATPase activity
AC880_RS07480	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AC880_RS07485	COG0066	3-isopropylmalate dehydratase activity
AC880_RS07490	COG0473	3-isopropylmalate dehydrogenase activity
AC880_RS07495	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AC880_RS07505	COG0101	tRNA pseudouridine synthase activity
AC880_RS07510	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AC880_RS07525	COG0135	phosphoribosylanthranilate isomerase activity
AC880_RS07540	COG3022	response to hydroperoxide
AC880_RS07550	COG1289	transmembrane transporter activity
AC880_RS07555	COG3023	N-Acetylmuramoyl-L-alanine amidase
AC880_RS07565	COG0424	maF-like protein
AC880_RS07570	COG1399	metal-binding, possibly nucleic acid-binding protein
AC880_RS07575	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AC880_RS07580	COG0416	fatty acid biosynthetic process
AC880_RS07585	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AC880_RS07600	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AC880_RS07605	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AC880_RS07630	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AC880_RS07635	COG0481	GTPase activity
AC880_RS07640	COG0681	Belongs to the peptidase S26 family
AC880_RS07645	COG0571	ribonuclease III activity
AC880_RS07650	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AC880_RS07655	COG1381	Involved in DNA repair and RecF pathway recombination
AC880_RS07665	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AC880_RS07675	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS07680	COG0670	Belongs to the BI1 family
AC880_RS07695	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AC880_RS07705	COG0583	DNA-binding transcription factor activity
AC880_RS07720	COG0583	DNA-binding transcription factor activity
AC880_RS07735	COG0791	NLP P60 protein
AC880_RS07740	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AC880_RS07745	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AC880_RS07750	COG3193	protein, possibly involved in utilization of glycolate and propanediol
AC880_RS07760	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AC880_RS07765	COG0697	spore germination
AC880_RS07770	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
AC880_RS07785	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AC880_RS07815	COG1446	asparaginase
AC880_RS07820	COG4172	Belongs to the ABC transporter superfamily
AC880_RS07825	COG0747	negative chemotaxis
AC880_RS07835	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS07860	COG0504	CTP synthase activity
AC880_RS07865	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AC880_RS07875	COG0148	phosphopyruvate hydratase activity
AC880_RS07880	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AC880_RS07910	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AC880_RS07920	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AC880_RS07945	COG1981	membrane
AC880_RS07975	COG0039	L-malate dehydrogenase activity
AC880_RS07980	COG2188	Transcriptional regulator
AC880_RS07985	COG2009	succinate dehydrogenase
AC880_RS07990	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AC880_RS07995	COG1053	succinate dehydrogenase
AC880_RS08000	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AC880_RS08005	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AC880_RS08010	COG0372	Belongs to the citrate synthase family
AC880_RS08030	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AC880_RS08030	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AC880_RS08040	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AC880_RS08045	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AC880_RS08060	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AC880_RS08065	COG3842	ATPase activity
AC880_RS08070	COG1176	ABC-type spermidine putrescine transport system, permease component I
AC880_RS08075	COG1177	transmembrane transport
AC880_RS08100	COG1960	acyl-CoA dehydrogenase activity
AC880_RS08105	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AC880_RS08110	COG0704	Plays a role in the regulation of phosphate uptake
AC880_RS08120	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
AC880_RS08125	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AC880_RS08125	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AC880_RS08130	COG1643	Atp-dependent helicase
AC880_RS08145	COG0438	transferase activity, transferring glycosyl groups
AC880_RS08150	COG0726	polysaccharide deacetylase
AC880_RS08155	COG0463	Glycosyl transferase, family 2
AC880_RS08160	COG0438	transferase activity, transferring glycosyl groups
AC880_RS08165	COG2194	sulfuric ester hydrolase activity
AC880_RS08190	COG0859	PFAM glycosyl transferase family 9
AC880_RS08195	COG1132	(ABC) transporter
AC880_RS08210	COG0077	Prephenate dehydratase
AC880_RS08215	COG1530	ribonuclease E activity
AC880_RS08255	COG3468	outer membrane autotransporter barrel domain protein
AC880_RS08260	COG0424	maF-like protein
AC880_RS08265	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AC880_RS08270	COG0799	negative regulation of ribosome biogenesis
AC880_RS08275	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AC880_RS08280	COG0408	coproporphyrinogen oxidase activity
AC880_RS08285	COG0151	Belongs to the GarS family
AC880_RS08290	COG0217	transcriptional regulatory protein
AC880_RS08295	COG0433	COG0433 Predicted ATPase
AC880_RS08300	COG1115	amino acid carrier protein
AC880_RS08305	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AC880_RS08315	COG1012	belongs to the aldehyde dehydrogenase family
AC880_RS08340	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AC880_RS08355	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS08365	COG0747	negative chemotaxis
AC880_RS08375	COG0473	3-isopropylmalate dehydrogenase activity
AC880_RS08380	COG2814	Major facilitator Superfamily
AC880_RS08385	COG1566	PFAM secretion protein HlyD family protein
AC880_RS08395	COG1846	Transcriptional regulator
AC880_RS08405	COG0697	spore germination
AC880_RS08415	COG0501	Belongs to the peptidase M48B family
AC880_RS08435	COG0583	DNA-binding transcription factor activity
AC880_RS08440	COG3842	ATPase activity
AC880_RS08445	COG1178	ABC-type Fe3 transport system permease component
AC880_RS08450	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AC880_RS08455	COG1840	ABC-type Fe3 transport system, periplasmic component
AC880_RS08460	COG0492	ferredoxin-NADP+ reductase activity
AC880_RS08480	COG2233	PERMEase
AC880_RS08485	COG0840	transmembrane signaling receptor activity
AC880_RS08490	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AC880_RS08520	COG4789	Type iii secretion
AC880_RS08585	COG4669	(LipO)protein
AC880_RS08620	COG4790	Type iii secretion
AC880_RS08625	COG4794	Type iii secretion
AC880_RS08630	COG4791	protein targeting
AC880_RS08635	COG4792	protein secretion
AC880_RS08650	COG1595	DNA-templated transcription, initiation
AC880_RS08675	COG2208	phosphoserine phosphatase activity
AC880_RS08675	COG2770	Histidine kinase
AC880_RS08685	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AC880_RS08690	COG2172	sigma factor antagonist activity
AC880_RS08695	COG1366	Belongs to the anti-sigma-factor antagonist family
AC880_RS08700	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AC880_RS08735	COG2358	TRAP transporter, solute receptor (TAXI family
AC880_RS08740	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AC880_RS08770	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AC880_RS08780	COG2252	PERMEase
AC880_RS08785	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AC880_RS08795	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AC880_RS08800	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AC880_RS08830	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AC880_RS08835	COG0789	Transcriptional regulator
AC880_RS08845	COG0678	peroxiredoxin activity
AC880_RS08845	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AC880_RS08855	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AC880_RS08860	COG0584	glycerophosphoryl diester phosphodiesterase
AC880_RS08865	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AC880_RS08875	COG4181	ATPase activity
AC880_RS08885	COG2823	Periplasmic or secreted lipoprotein
AC880_RS08895	COG3237	CsbD-like
AC880_RS08900	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AC880_RS08900	COG1181	Belongs to the D-alanine--D-alanine ligase family
AC880_RS08905	COG0189	ligase activity
AC880_RS08905	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AC880_RS08925	COG2833	Protein of unknown function (DUF455)
AC880_RS08930	COG2951	lytic endotransglycosylase activity
AC880_RS08950	COG1522	sequence-specific DNA binding
AC880_RS08960	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AC880_RS08965	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AC880_RS08970	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AC880_RS08975	COG0196	riboflavin kinase activity
AC880_RS08980	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AC880_RS09000	COG0210	DNA helicase
AC880_RS09005	COG4771	TonB-dependent receptor
AC880_RS09010	COG0488	(ABC) transporter
AC880_RS09015	COG2890	protein-(glutamine-N5) methyltransferase activity
AC880_RS09020	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AC880_RS09025	COG2171	N-acyltransferase activity
AC880_RS09060	COG1278	Cold shock
AC880_RS09080	COG0544	peptidyl-prolyl cis-trans isomerase activity
AC880_RS09085	COG0740	serine-type endopeptidase activity
AC880_RS09090	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AC880_RS09095	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AC880_RS09100	COG0583	DNA-binding transcription factor activity
AC880_RS09105	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS09120	COG1024	Enoyl-CoA hydratase
AC880_RS09130	COG0183	Belongs to the thiolase family
AC880_RS09135	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS09140	COG1960	acyl-CoA dehydrogenase activity
AC880_RS09155	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AC880_RS09185	COG3468	outer membrane autotransporter barrel domain protein
AC880_RS09190	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AC880_RS09200	COG0556	nucleotide-excision repair
AC880_RS09205	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AC880_RS09215	COG1104	cysteine desulfurase activity
AC880_RS09220	COG0822	iron-sulfur transferase activity
AC880_RS09225	COG0316	Belongs to the HesB IscA family
AC880_RS09230	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AC880_RS09235	COG0443	Heat shock 70 kDa protein
AC880_RS09240	COG0633	Ferredoxin
AC880_RS09260	COG1024	Enoyl-CoA hydratase
AC880_RS09275	COG3395	kinase activity
AC880_RS09280	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AC880_RS09295	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
AC880_RS09305	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AC880_RS09330	COG0747	negative chemotaxis
AC880_RS09335	COG0601	transmembrane transport
AC880_RS09340	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS09345	COG4172	Belongs to the ABC transporter superfamily
AC880_RS09350	COG0154	amidase activity
AC880_RS09395	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AC880_RS09400	COG0425	Belongs to the sulfur carrier protein TusA family
AC880_RS09410	COG0228	four-way junction DNA binding
AC880_RS09415	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AC880_RS09420	COG0336	Belongs to the RNA methyltransferase TrmD family
AC880_RS09425	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AC880_RS09445	COG0642	Histidine kinase
AC880_RS09460	COG0525	valine-tRNA ligase activity
AC880_RS09465	COG0105	UTP biosynthetic process
AC880_RS09470	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AC880_RS09480	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AC880_RS09485	COG0124	histidyl-tRNA synthetase
AC880_RS09490	COG2976	Protein conserved in bacteria
AC880_RS09495	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AC880_RS09500	COG1160	GTP binding
AC880_RS09505	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AC880_RS09510	COG1923	regulation of RNA biosynthetic process
AC880_RS09515	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AC880_RS09520	COG0330	HflC and HflK could
AC880_RS09525	COG0330	HflC and HflK could
AC880_RS09530	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
AC880_RS09535	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AC880_RS09540	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
AC880_RS09545	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AC880_RS09555	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AC880_RS09590	COG0628	permease
AC880_RS09595	COG0842	Transport permease protein
AC880_RS09600	COG1131	(ABC) transporter
AC880_RS09670	COG0156	8-amino-7-oxononanoate synthase activity
AC880_RS09680	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AC880_RS09680	COG4106	trans-aconitate 2-methyltransferase activity
AC880_RS09685	COG1380	Effector of murein hydrolase LrgA
AC880_RS09705	COG3284	Transcriptional regulator
AC880_RS09710	COG1012	belongs to the aldehyde dehydrogenase family
AC880_RS09725	COG2733	membrane
AC880_RS09730	COG0583	DNA-binding transcription factor activity
AC880_RS09735	COG0384	phenazine biosynthesis protein PhzF
AC880_RS09740	COG5507	3-demethylubiquinone-9 3-methyltransferase
AC880_RS09745	COG2169	Transcriptional regulator
AC880_RS09775	COG0659	secondary active sulfate transmembrane transporter activity
AC880_RS09800	COG1132	(ABC) transporter
AC880_RS09845	COG2207	Transcriptional regulator
AC880_RS09980	COG2346	COG2346, Truncated hemoglobins
AC880_RS10025	COG0183	Belongs to the thiolase family
AC880_RS10040	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS10045	COG0633	Ferredoxin
AC880_RS10055	COG1024	Enoyl-CoA hydratase
AC880_RS10065	COG4638	Rieske (2fe-2S)
AC880_RS10075	COG0559	Belongs to the binding-protein-dependent transport system permease family
AC880_RS10095	COG2224	Isocitrate lyase
AC880_RS10100	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AC880_RS10100	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AC880_RS10115	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AC880_RS10120	COG0322	excinuclease ABC activity
AC880_RS10125	COG1472	Belongs to the glycosyl hydrolase 3 family
AC880_RS10130	COG0736	holo-[acyl-carrier-protein] synthase activity
AC880_RS10135	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AC880_RS10145	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AC880_RS10150	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AC880_RS10175	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
AC880_RS10190	COG2032	superoxide dismutase activity
AC880_RS10205	COG1024	Enoyl-CoA hydratase
AC880_RS10215	COG1802	Transcriptional regulator
AC880_RS10225	COG0183	Belongs to the thiolase family
AC880_RS10230	COG1942	4-Oxalocrotonate Tautomerase
AC880_RS10240	COG4176	ABC-type proline glycine betaine transport system permease component
AC880_RS10255	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AC880_RS10260	COG2814	Major facilitator Superfamily
AC880_RS10265	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AC880_RS10270	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AC880_RS10300	COG2814	Major facilitator Superfamily
AC880_RS10305	COG0495	leucyl-tRNA aminoacylation
AC880_RS10320	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AC880_RS10330	COG0154	amidase activity
AC880_RS10335	COG1250	3-hydroxyacyl-CoA dehydrogenase
AC880_RS10390	COG0427	acetyl-CoA hydrolase
AC880_RS10395	COG0583	DNA-binding transcription factor activity
AC880_RS10415	COG0730	response to heat
AC880_RS10420	COG0697	spore germination
AC880_RS10455	COG2885	chlorophyll binding
AC880_RS10480	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AC880_RS10485	COG3384	dioxygenase
AC880_RS10500	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AC880_RS10505	COG3474	cytochrome
AC880_RS10515	COG1595	DNA-templated transcription, initiation
AC880_RS10530	COG2204	response regulator
AC880_RS10570	COG4964	Belongs to the GSP D family
AC880_RS10620	COG1846	Transcriptional regulator
AC880_RS10625	COG4172	Belongs to the ABC transporter superfamily
AC880_RS10630	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS10635	COG0601	transmembrane transport
AC880_RS10640	COG0747	negative chemotaxis
AC880_RS10650	COG0598	Magnesium transport protein CorA
AC880_RS10655	COG0210	DNA helicase
AC880_RS10670	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AC880_RS10675	COG1012	belongs to the aldehyde dehydrogenase family
AC880_RS10680	COG0483	inositol monophosphate 1-phosphatase activity
AC880_RS10685	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AC880_RS10695	COG1045	serine acetyltransferase
AC880_RS10700	COG0166	Belongs to the GPI family
AC880_RS10715	COG2197	response regulator
AC880_RS10720	COG1846	Transcriptional regulator
AC880_RS10740	COG0726	polysaccharide deacetylase
AC880_RS10740	COG1649	PFAM Uncharacterised BCR, COG1649
AC880_RS10745	COG1215	transferase activity, transferring glycosyl groups
AC880_RS10755	COG1902	pentaerythritol trinitrate reductase activity
AC880_RS10780	COG0251	oxidation-reduction process
AC880_RS10790	COG1832	CoA-binding protein
AC880_RS10795	COG1414	Transcriptional regulator
AC880_RS10800	COG1902	pentaerythritol trinitrate reductase activity
AC880_RS10800	COG0446	pyridine nucleotide-disulphide oxidoreductase
AC880_RS10810	COG3842	ATPase activity
AC880_RS10840	COG0583	DNA-binding transcription factor activity
AC880_RS10850	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS10855	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
AC880_RS10860	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AC880_RS10875	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AC880_RS10875	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AC880_RS10880	COG1250	3-hydroxyacyl-CoA dehydrogenase
AC880_RS10905	COG0527	aspartate kinase activity
AC880_RS10910	COG0037	tRNA processing
AC880_RS10920	COG0825	malonyl-CoA metabolic process
AC880_RS10930	COG0215	cysteine-tRNA ligase activity
AC880_RS10945	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AC880_RS10950	COG1968	undecaprenyl-diphosphatase activity
AC880_RS10955	COG1253	flavin adenine dinucleotide binding
AC880_RS10960	COG0483	inositol monophosphate 1-phosphatase activity
AC880_RS10980	COG0668	transmembrane transport
AC880_RS11005	COG0583	DNA-binding transcription factor activity
AC880_RS11030	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AC880_RS11045	COG2831	hemolysin activation secretion protein
AC880_RS11050	COG3539	Fimbrial protein
AC880_RS11055	COG3188	usher protein
AC880_RS11060	COG3121	Chaperone
AC880_RS11070	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
AC880_RS11070	COG3210	domain, Protein
AC880_RS11070	COG3064	Membrane
AC880_RS11075	COG2197	response regulator
AC880_RS11080	COG2205	protein histidine kinase activity
AC880_RS11080	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS11090	COG4336	lyase activity
AC880_RS11115	COG2010	Cytochrome c
AC880_RS11120	COG3189	MarR family transcriptional regulator
AC880_RS11135	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AC880_RS11145	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AC880_RS11145	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AC880_RS11155	COG0028	Belongs to the TPP enzyme family
AC880_RS11165	COG1012	belongs to the aldehyde dehydrogenase family
AC880_RS11170	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AC880_RS11175	COG0010	Belongs to the arginase family
AC880_RS11180	COG1126	abc transporter atp-binding protein
AC880_RS11190	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS11205	COG0084	hydrolase, TatD family'
AC880_RS11210	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AC880_RS11215	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AC880_RS11220	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AC880_RS11235	COG0587	DNA-directed DNA polymerase activity
AC880_RS11245	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AC880_RS11250	COG1959	2 iron, 2 sulfur cluster binding
AC880_RS11255	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AC880_RS11255	COG1017	nitric oxide dioxygenase activity
AC880_RS11290	COG0488	(ABC) transporter
AC880_RS11295	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AC880_RS11310	COG1024	Enoyl-CoA hydratase
AC880_RS11315	COG1619	proteins homologs of microcin C7 resistance protein MccF
AC880_RS11320	COG0590	tRNA wobble adenosine to inosine editing
AC880_RS11345	COG2212	antiporter activity
AC880_RS11350	COG1863	multisubunit Na H antiporter MnhE subunit
AC880_RS11355	COG0651	ATP synthesis coupled electron transport
AC880_RS11360	COG1006	Multisubunit Na H antiporter MnhC subunit
AC880_RS11365	COG2111	Na H antiporter
AC880_RS11365	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AC880_RS11370	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS11385	COG0583	DNA-binding transcription factor activity
AC880_RS11390	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS11420	COG0431	NADPH-dependent FMN reductase
AC880_RS11465	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS11470	COG0179	Fumarylacetoacetate (FAA) hydrolase
AC880_RS11500	COG0625	glutathione transferase activity
AC880_RS11505	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
AC880_RS11510	COG2944	sequence-specific DNA binding
AC880_RS11520	COG2197	response regulator
AC880_RS11545	COG3119	arylsulfatase activity
AC880_RS11580	COG0714	Associated with various cellular activities
AC880_RS11600	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS11605	COG0861	Integral membrane protein TerC family
AC880_RS11645	COG0300	oxidoreductase activity
AC880_RS11670	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AC880_RS11685	COG0438	transferase activity, transferring glycosyl groups
AC880_RS11705	COG0463	Glycosyl transferase, family 2
AC880_RS11720	COG0783	Belongs to the Dps family
AC880_RS11735	COG0583	DNA-binding transcription factor activity
AC880_RS11740	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AC880_RS11755	COG0656	L-ascorbic acid biosynthetic process
AC880_RS11765	COG0583	DNA-binding transcription factor activity
AC880_RS11775	COG1840	ABC-type Fe3 transport system, periplasmic component
AC880_RS11780	COG1178	ABC-type Fe3 transport system permease component
AC880_RS11785	COG3842	ATPase activity
AC880_RS11795	COG1741	Belongs to the pirin family
AC880_RS11800	COG1741	Belongs to the pirin family
AC880_RS11805	COG0583	DNA-binding transcription factor activity
AC880_RS11810	COG2204	response regulator
AC880_RS11820	COG0174	glutamine synthetase
AC880_RS11825	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AC880_RS11840	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AC880_RS11845	COG2200	EAL domain
AC880_RS11845	COG2199	diguanylate cyclase activity
AC880_RS11850	COG0840	transmembrane signaling receptor activity
AC880_RS11865	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AC880_RS11870	COG1561	YicC-like family, N-terminal region
AC880_RS11890	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AC880_RS11895	COG0791	NLP P60 protein
AC880_RS11900	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS11905	COG2863	cytochrome
AC880_RS11910	COG3258	Cytochrome c
AC880_RS11915	COG0194	GDP metabolic process
AC880_RS11920	COG1758	RNA polymerase activity
AC880_RS11925	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AC880_RS11930	COG1126	abc transporter atp-binding protein
AC880_RS11935	COG0765	amino acid transport
AC880_RS11940	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS11960	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AC880_RS11965	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
AC880_RS11970	COG3539	Fimbrial protein
AC880_RS11975	COG2850	peptidyl-arginine hydroxylation
AC880_RS11980	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AC880_RS11985	COG3360	Dodecin
AC880_RS12030	COG0009	L-threonylcarbamoyladenylate synthase
AC880_RS12035	COG2321	neutral zinc metallopeptidase
AC880_RS12055	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AC880_RS12060	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AC880_RS12065	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AC880_RS12080	COG1074	ATP-dependent DNA helicase activity
AC880_RS12090	COG2814	Major facilitator Superfamily
AC880_RS12100	COG1686	Belongs to the peptidase S11 family
AC880_RS12115	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
AC880_RS12120	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AC880_RS12125	COG4974	Belongs to the 'phage' integrase family
AC880_RS12130	COG0583	DNA-binding transcription factor activity
AC880_RS12135	COG0028	Belongs to the TPP enzyme family
AC880_RS12150	COG0028	Belongs to the TPP enzyme family
AC880_RS12155	COG1126	abc transporter atp-binding protein
AC880_RS12160	COG0765	amino acid transport
AC880_RS12175	COG1414	Transcriptional regulator
AC880_RS12180	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS12185	COG0009	L-threonylcarbamoyladenylate synthase
AC880_RS12190	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AC880_RS12195	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AC880_RS12200	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AC880_RS12210	COG2944	sequence-specific DNA binding
AC880_RS12220	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AC880_RS12275	COG1126	abc transporter atp-binding protein
AC880_RS12280	COG0765	amino acid transport
AC880_RS12285	COG0765	amino acid transport
AC880_RS12290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS12300	COG2423	ornithine cyclodeaminase activity
AC880_RS12305	COG1764	response to oxidative stress
AC880_RS12315	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AC880_RS12320	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AC880_RS12330	COG0189	ligase activity
AC880_RS12335	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AC880_RS12340	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AC880_RS12345	COG2197	response regulator
AC880_RS12355	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AC880_RS12375	COG1289	transmembrane transporter activity
AC880_RS12385	COG3022	response to hydroperoxide
AC880_RS12395	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS12410	COG3486	L-lysine 6-monooxygenase (NADPH) activity
AC880_RS12440	COG2814	Major facilitator Superfamily
AC880_RS12460	COG3706	GGDEF domain
AC880_RS12485	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AC880_RS12490	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AC880_RS12495	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AC880_RS12500	COG1674	ftsk spoiiie
AC880_RS12505	COG0492	ferredoxin-NADP+ reductase activity
AC880_RS12510	COG1193	negative regulation of DNA recombination
AC880_RS12525	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AC880_RS12540	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AC880_RS12545	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AC880_RS12550	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
AC880_RS12560	COG0745	RESPONSE REGULATOR receiver
AC880_RS12605	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AC880_RS12625	COG0612	Peptidase, M16
AC880_RS12635	COG0443	Heat shock 70 kDa protein
AC880_RS12645	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AC880_RS12655	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AC880_RS12660	COG1420	regulation of RNA biosynthetic process
AC880_RS12665	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AC880_RS12670	COG0497	DNA recombination
AC880_RS12675	COG0735	belongs to the Fur family
AC880_RS12680	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AC880_RS12685	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AC880_RS12690	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AC880_RS12725	COG0446	pyridine nucleotide-disulphide oxidoreductase
AC880_RS12725	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AC880_RS12730	COG4311	Sarcosine oxidase, delta subunit
AC880_RS12735	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AC880_RS12745	COG0583	DNA-binding transcription factor activity
AC880_RS12755	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AC880_RS12785	COG4964	Belongs to the GSP D family
AC880_RS12845	COG0181	hydroxymethylbilane synthase activity
AC880_RS12850	COG0861	Integral membrane protein TerC family
AC880_RS12855	COG0861	Integral membrane protein TerC family
AC880_RS12860	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AC880_RS12865	COG0045	succinate-CoA ligase (ADP-forming) activity
AC880_RS12875	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AC880_RS12885	COG2137	regulation of response to DNA damage stimulus
AC880_RS12890	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AC880_RS12910	COG1024	Enoyl-CoA hydratase
AC880_RS12910	COG1250	3-hydroxyacyl-CoA dehydrogenase
AC880_RS12915	COG3842	ATPase activity
AC880_RS12930	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS12950	COG0583	DNA-binding transcription factor activity
AC880_RS12955	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS12965	COG2974	May be involved in recombination
AC880_RS12970	COG0540	Belongs to the ATCase OTCase family
AC880_RS13045	COG0776	regulation of translation
AC880_RS13050	COG0072	phenylalanine-tRNA ligase activity
AC880_RS13050	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AC880_RS13055	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AC880_RS13060	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AC880_RS13065	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AC880_RS13075	COG0756	dUTP diphosphatase activity
AC880_RS13110	COG0500	methyltransferase
AC880_RS13125	COG0586	Pfam SNARE associated Golgi protein
AC880_RS13155	COG1609	Transcriptional regulator
AC880_RS13160	COG4172	Belongs to the ABC transporter superfamily
AC880_RS13165	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS13170	COG0601	transmembrane transport
AC880_RS13175	COG0747	negative chemotaxis
AC880_RS13190	COG1280	lysine exporter protein (LysE YggA)
AC880_RS13205	COG2814	Major facilitator Superfamily
AC880_RS13235	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
AC880_RS13255	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AC880_RS13295	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS13300	COG1116	anion transmembrane transporter activity
AC880_RS13310	COG1228	amidohydrolase
AC880_RS13325	COG0477	Major facilitator Superfamily
AC880_RS13335	COG3550	peptidyl-serine autophosphorylation
AC880_RS13350	COG0519	Catalyzes the synthesis of GMP from XMP
AC880_RS13350	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AC880_RS13395	COG0420	3'-5' exonuclease activity
AC880_RS13400	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AC880_RS13430	COG0395	ABC-type sugar transport system, permease component
AC880_RS13440	COG3842	ATPase activity
AC880_RS13470	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS13505	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AC880_RS13530	COG0602	queuosine metabolic process
AC880_RS13535	COG0720	synthase
AC880_RS13540	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AC880_RS13545	COG0235	Class ii aldolase
AC880_RS13570	COG3210	domain, Protein
AC880_RS13570	COG3064	Membrane
AC880_RS13570	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
AC880_RS13575	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AC880_RS13575	COG0047	phosphoribosylformylglycinamidine synthase activity
AC880_RS13580	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AC880_RS13585	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AC880_RS13585	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AC880_RS13590	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AC880_RS13610	COG3539	Fimbrial protein
AC880_RS13620	COG2050	protein possibly involved in aromatic compounds catabolism
AC880_RS13625	COG1024	Enoyl-CoA hydratase
AC880_RS13630	COG1012	belongs to the aldehyde dehydrogenase family
AC880_RS13640	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AC880_RS13645	COG2151	metal-sulfur cluster biosynthetic enzyme
AC880_RS13650	COG3396	Phenylacetate-CoA oxygenase
AC880_RS13655	COG3460	Phenylacetate-CoA oxygenase
AC880_RS13660	COG3396	Phenylacetate-CoA oxygenase
AC880_RS13665	COG3327	negative regulation of DNA-templated transcription, initiation
AC880_RS13675	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AC880_RS13680	COG0501	Belongs to the peptidase M48B family
AC880_RS13685	COG1162	GTPase activity
AC880_RS13690	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS13695	COG0601	transmembrane transport
AC880_RS13700	COG0747	negative chemotaxis
AC880_RS13745	COG0668	transmembrane transport
AC880_RS13750	COG0165	Argininosuccinate lyase
AC880_RS13770	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AC880_RS13775	COG0303	'Molybdopterin
AC880_RS13780	COG0521	Mo-molybdopterin cofactor biosynthetic process
AC880_RS13795	COG0315	cyclic pyranopterin monophosphate synthase activity
AC880_RS13805	COG0412	Dienelactone hydrolase
AC880_RS13815	COG0678	peroxiredoxin activity
AC880_RS13825	COG0697	spore germination
AC880_RS13830	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AC880_RS13855	COG0789	Transcriptional regulator
AC880_RS13875	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS13885	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AC880_RS13890	COG1845	cytochrome c oxidase, subunit III
AC880_RS13895	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AC880_RS13905	COG0477	Major facilitator Superfamily
AC880_RS13935	COG3468	outer membrane autotransporter barrel domain protein
AC880_RS13945	COG1309	transcriptional regulator
AC880_RS13950	COG2271	Major facilitator Superfamily
AC880_RS13985	COG0506	proline dehydrogenase activity
AC880_RS13985	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AC880_RS13985	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AC880_RS13995	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AC880_RS13995	COG3008	intermembrane lipid transfer
AC880_RS14000	COG2995	paraquat-inducible protein a
AC880_RS14005	COG0542	response to heat
AC880_RS14010	COG4953	penicillin-binding protein 1C
AC880_RS14020	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AC880_RS14025	COG1278	Cold shock
AC880_RS14035	COG0183	Belongs to the thiolase family
AC880_RS14040	COG0038	chloride channel
AC880_RS14045	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AC880_RS14050	COG1570	exodeoxyribonuclease VII activity
AC880_RS14060	COG0811	peptide transport
AC880_RS14065	COG0848	biopolymer transport protein
AC880_RS14070	COG1663	tetraacyldisaccharide 4'-kinase activity
AC880_RS14075	COG2835	tetraacyldisaccharide 4'-kinase activity
AC880_RS14080	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AC880_RS14085	COG0563	adenylate kinase activity
AC880_RS14095	COG0728	peptidoglycan biosynthetic process
AC880_RS14105	COG0268	Binds directly to 16S ribosomal RNA
AC880_RS14135	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
AC880_RS14160	COG0436	Aminotransferase
AC880_RS14165	COG3737	Protein of unknown function (DUF498/DUF598)
AC880_RS14170	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AC880_RS14175	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AC880_RS14180	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AC880_RS14190	COG0305	Participates in initiation and elongation during chromosome replication
AC880_RS14200	COG0359	binds to the 23S rRNA
AC880_RS14205	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AC880_RS14210	COG2965	DNA replication, synthesis of RNA primer
AC880_RS14215	COG0360	Binds together with S18 to 16S ribosomal RNA
AC880_RS14220	COG1469	GTP cyclohydrolase I activity
AC880_RS14225	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AC880_RS14230	COG0142	geranyltranstransferase activity
AC880_RS14235	COG1722	exodeoxyribonuclease VII activity
AC880_RS14245	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS14265	COG2239	Acts as a magnesium transporter
AC880_RS14275	COG2855	membrane
AC880_RS14285	COG1473	amidohydrolase
AC880_RS14290	COG0318	PFAM AMP-dependent synthetase and ligase
AC880_RS14315	COG1501	Belongs to the glycosyl hydrolase 31 family
AC880_RS14320	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AC880_RS14325	COG2011	ABC-type metal ion transport system permease component
AC880_RS14345	COG1454	alcohol dehydrogenase
AC880_RS14375	COG2186	Transcriptional regulator
AC880_RS14380	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS14400	COG1175	transmembrane transport
AC880_RS14405	COG0395	ABC-type sugar transport system, permease component
AC880_RS14410	COG3842	ATPase activity
AC880_RS14415	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AC880_RS14425	COG1653	transport
AC880_RS14445	COG2818	Glycosylase
AC880_RS14450	COG2982	Protein involved in outer membrane biogenesis
AC880_RS14460	COG1309	transcriptional regulator
AC880_RS14465	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS14525	COG0583	DNA-binding transcription factor activity
AC880_RS14530	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AC880_RS14535	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AC880_RS14550	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS14555	COG0477	Major facilitator Superfamily
AC880_RS14565	COG0583	DNA-binding transcription factor activity
AC880_RS14570	COG1448	Aminotransferase
AC880_RS14575	COG1418	mRNA catabolic process
AC880_RS14600	COG1063	alcohol dehydrogenase
AC880_RS14620	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS14630	COG0318	PFAM AMP-dependent synthetase and ligase
AC880_RS14640	COG1522	sequence-specific DNA binding
AC880_RS14645	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS14650	COG0307	riboflavin synthase, alpha
AC880_RS14655	COG0154	amidase activity
AC880_RS14675	COG2807	transmembrane transport
AC880_RS14680	COG0590	tRNA wobble adenosine to inosine editing
AC880_RS14690	COG0583	DNA-binding transcription factor activity
AC880_RS14705	COG1902	pentaerythritol trinitrate reductase activity
AC880_RS14725	COG0559	Belongs to the binding-protein-dependent transport system permease family
AC880_RS14730	COG0251	oxidation-reduction process
AC880_RS14735	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AC880_RS14745	COG1414	Transcriptional regulator
AC880_RS14750	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS14765	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS14780	COG1024	Enoyl-CoA hydratase
AC880_RS14785	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS14790	COG0154	amidase activity
AC880_RS14830	COG3909	cytochrome
AC880_RS14835	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AC880_RS14840	COG0625	glutathione transferase activity
AC880_RS14845	COG0730	response to heat
AC880_RS14850	COG0482	sulfurtransferase activity
AC880_RS14855	COG0583	DNA-binding transcription factor activity
AC880_RS14875	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AC880_RS14900	COG2819	hydrolase of the alpha beta superfamily
AC880_RS14905	COG0247	lactate metabolic process
AC880_RS14910	COG0277	FAD linked oxidase domain protein
AC880_RS14915	COG0277	FAD linked oxidase domain protein
AC880_RS14920	COG0277	FAD linked oxidase domain protein
AC880_RS14925	COG3210	domain, Protein
AC880_RS14925	COG3064	Membrane
AC880_RS14925	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
AC880_RS14925	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
AC880_RS14925	COG3064	Membrane
AC880_RS14925	COG3210	domain, Protein
AC880_RS14930	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AC880_RS14935	COG0312	modulator of DNA gyrase
AC880_RS14970	COG1666	GTP binding
AC880_RS15015	COG3220	belongs to the UPF0276 family
AC880_RS15035	COG0640	Transcriptional regulator
AC880_RS15040	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AC880_RS15045	COG1845	cytochrome c oxidase, subunit III
AC880_RS15050	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AC880_RS15060	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AC880_RS15095	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS15100	COG0583	DNA-binding transcription factor activity
AC880_RS15130	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AC880_RS15130	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AC880_RS15145	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AC880_RS15150	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AC880_RS15160	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AC880_RS15175	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AC880_RS15180	COG0316	Belongs to the HesB IscA family
AC880_RS15190	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AC880_RS15195	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AC880_RS15200	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AC880_RS15205	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AC880_RS15210	COG0312	modulator of DNA gyrase
AC880_RS15215	COG3028	Belongs to the UPF0307 family
AC880_RS15230	COG1116	anion transmembrane transporter activity
AC880_RS15235	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS15240	COG1335	isochorismatase
AC880_RS15245	COG0346	lactoylglutathione lyase activity
AC880_RS15250	COG0513	Belongs to the DEAD box helicase family
AC880_RS15255	COG3069	C4-dicarboxylate transmembrane transporter activity
AC880_RS15260	COG1802	Transcriptional regulator
AC880_RS15275	COG1042	CoA-binding domain protein
AC880_RS15275	COG0045	succinate-CoA ligase (ADP-forming) activity
AC880_RS15275	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AC880_RS15280	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AC880_RS15295	COG1522	sequence-specific DNA binding
AC880_RS15330	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AC880_RS15335	COG1696	Membrane protein involved in D-alanine export
AC880_RS15360	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AC880_RS15370	COG2264	protein methyltransferase activity
AC880_RS15375	COG0439	Biotin carboxylase
AC880_RS15380	COG0511	ligase activity, forming carbon-carbon bonds
AC880_RS15385	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AC880_RS15390	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AC880_RS15395	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AC880_RS15400	COG3150	esterase
AC880_RS15405	COG0557	exoribonuclease II activity
AC880_RS15415	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AC880_RS15435	COG1522	sequence-specific DNA binding
AC880_RS15440	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AC880_RS15445	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS15465	COG0653	protein targeting
AC880_RS15470	COG0739	heme binding
AC880_RS15480	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AC880_RS15485	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AC880_RS15495	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AC880_RS15500	COG1181	Belongs to the D-alanine--D-alanine ligase family
AC880_RS15505	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AC880_RS15510	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AC880_RS15520	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AC880_RS15525	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AC880_RS15530	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AC880_RS15540	COG3116	cell division
AC880_RS15545	COG0275	rRNA processing
AC880_RS15550	COG2001	Belongs to the MraZ family
AC880_RS15560	COG0488	(ABC) transporter
AC880_RS15565	COG0418	dihydroorotase activity
AC880_RS15570	COG1473	amidohydrolase
AC880_RS15620	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AC880_RS15625	COG4654	Cytochrome c, class I
AC880_RS15630	COG0129	dihydroxy-acid dehydratase activity
AC880_RS15635	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AC880_RS15690	COG2084	Dehydrogenase
AC880_RS15695	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AC880_RS15710	COG2096	Adenosyltransferase
AC880_RS15720	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AC880_RS15725	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AC880_RS15735	COG0523	cobalamin synthesis protein
AC880_RS15740	COG0735	belongs to the Fur family
AC880_RS15760	COG0803	Belongs to the bacterial solute-binding protein 9 family
AC880_RS15770	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
AC880_RS15780	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AC880_RS15790	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AC880_RS15795	COG1560	Kdo2-lipid A biosynthetic process
AC880_RS15805	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AC880_RS15820	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AC880_RS15825	COG1950	PFAM Membrane protein of
AC880_RS15840	COG0583	DNA-binding transcription factor activity
AC880_RS15850	COG0477	Major facilitator Superfamily
AC880_RS15865	COG0617	tRNA 3'-terminal CCA addition
AC880_RS15875	COG0513	Belongs to the DEAD box helicase family
AC880_RS15880	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AC880_RS15895	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AC880_RS15900	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AC880_RS15960	COG1280	lysine exporter protein (LysE YggA)
AC880_RS15975	COG0405	Gamma-glutamyltransferase
AC880_RS15985	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AC880_RS16015	COG1309	transcriptional regulator
AC880_RS16025	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS16035	COG0745	RESPONSE REGULATOR receiver
AC880_RS16100	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AC880_RS16125	COG0582	viral genome integration into host DNA
AC880_RS16130	COG0012	GTP binding
AC880_RS16140	COG0193	aminoacyl-tRNA hydrolase activity
AC880_RS16145	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AC880_RS16150	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AC880_RS16160	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AC880_RS16165	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AC880_RS16175	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AC880_RS16200	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AC880_RS16210	COG1368	sulfuric ester hydrolase activity
AC880_RS16215	COG0642	Histidine kinase
AC880_RS16220	COG0745	RESPONSE REGULATOR receiver
AC880_RS16225	COG0277	FAD linked oxidase domain protein
AC880_RS16240	COG0166	Belongs to the GPI family
AC880_RS16245	COG0438	transferase activity, transferring glycosyl groups
AC880_RS16250	COG0438	transferase activity, transferring glycosyl groups
AC880_RS16265	COG0438	transferase activity, transferring glycosyl groups
AC880_RS16280	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AC880_RS16285	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AC880_RS16290	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
AC880_RS16300	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AC880_RS16310	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AC880_RS16315	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AC880_RS16325	COG0747	negative chemotaxis
AC880_RS16330	COG0601	transmembrane transport
AC880_RS16335	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS16355	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
AC880_RS16360	COG0830	nickel cation binding
AC880_RS16370	COG0804	urea catabolic process
AC880_RS16375	COG0832	Belongs to the urease beta subunit family
AC880_RS16385	COG0831	urea catabolic process
AC880_RS16390	COG0829	nickel cation binding
AC880_RS16400	COG0633	Ferredoxin
AC880_RS16415	COG2188	Transcriptional regulator
AC880_RS16440	COG2719	SpoVR family
AC880_RS16445	COG2718	Belongs to the UPF0229 family
AC880_RS16460	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS16465	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS16480	COG1960	acyl-CoA dehydrogenase activity
AC880_RS16525	COG0183	Belongs to the thiolase family
AC880_RS16530	COG2030	dehydratase
AC880_RS16590	COG0328	RNA-DNA hybrid ribonuclease activity
AC880_RS16595	COG2226	methyltransferase
AC880_RS16600	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AC880_RS16605	COG0741	lytic transglycosylase activity
AC880_RS16605	COG1388	LysM domain
AC880_RS16625	COG2979	Protein of unknown function (DUF533)
AC880_RS16660	COG1271	oxidase subunit
AC880_RS16665	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AC880_RS16670	COG0850	regulation of cytokinetic process
AC880_RS16675	COG2894	cell division
AC880_RS16680	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AC880_RS16700	COG0488	(ABC) transporter
AC880_RS16715	COG0601	transmembrane transport
AC880_RS16725	COG1215	transferase activity, transferring glycosyl groups
AC880_RS16740	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AC880_RS16750	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AC880_RS16770	COG0318	PFAM AMP-dependent synthetase and ligase
AC880_RS16775	COG2188	Transcriptional regulator
AC880_RS16780	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AC880_RS16785	COG2814	Major facilitator Superfamily
AC880_RS16795	COG0259	pyridoxamine-phosphate oxidase activity
AC880_RS16800	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AC880_RS16815	COG0583	DNA-binding transcription factor activity
AC880_RS16820	COG1960	acyl-CoA dehydrogenase activity
AC880_RS16840	COG0134	indole-3-glycerol-phosphate synthase activity
AC880_RS16845	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AC880_RS16850	COG0512	Glutamine amidotransferase of anthranilate synthase
AC880_RS16860	COG0546	phosphoglycolate phosphatase activity
AC880_RS16865	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AC880_RS16870	COG2967	ApaG domain
AC880_RS16875	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
AC880_RS16880	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AC880_RS16885	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AC880_RS16890	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AC880_RS16900	COG0037	tRNA processing
AC880_RS16910	COG3634	alkyl hydroperoxide reductase activity
AC880_RS16915	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AC880_RS16920	COG1024	Enoyl-CoA hydratase
AC880_RS16945	COG0356	it plays a direct role in the translocation of protons across the membrane
AC880_RS16955	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AC880_RS16960	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AC880_RS16965	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AC880_RS16970	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AC880_RS16975	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AC880_RS16980	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AC880_RS16990	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AC880_RS16995	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AC880_RS17000	COG0210	DNA helicase
AC880_RS17010	COG2195	Cleaves the N-terminal amino acid of tripeptides
AC880_RS17020	COG4172	Belongs to the ABC transporter superfamily
AC880_RS17025	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS17030	COG0601	transmembrane transport
AC880_RS17050	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AC880_RS17055	COG1024	Enoyl-CoA hydratase
AC880_RS17060	COG1024	Enoyl-CoA hydratase
AC880_RS17085	COG1250	3-hydroxyacyl-CoA dehydrogenase
AC880_RS17115	COG2132	Multicopper oxidase
AC880_RS17125	COG1024	Enoyl-CoA hydratase
AC880_RS17125	COG1250	3-hydroxyacyl-CoA dehydrogenase
AC880_RS17135	COG1414	Transcriptional regulator
AC880_RS17145	COG0154	amidase activity
AC880_RS17175	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AC880_RS17180	COG3568	Endonuclease Exonuclease Phosphatase
AC880_RS17185	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AC880_RS17225	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AC880_RS17235	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AC880_RS17250	COG1137	ATPase activity
AC880_RS17255	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AC880_RS17265	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AC880_RS17270	COG2010	Cytochrome c
AC880_RS17270	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AC880_RS17280	COG1660	Displays ATPase and GTPase activities
AC880_RS17285	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AC880_RS17320	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS17330	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AC880_RS17335	COG2890	protein-(glutamine-N5) methyltransferase activity
AC880_RS17340	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AC880_RS17345	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AC880_RS17395	COG1960	acyl-CoA dehydrogenase activity
AC880_RS17405	COG0183	Belongs to the thiolase family
AC880_RS17410	COG1522	sequence-specific DNA binding
AC880_RS17415	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AC880_RS17435	COG1024	Enoyl-CoA hydratase
AC880_RS17450	COG0604	alcohol dehydrogenase
AC880_RS17470	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AC880_RS17480	COG1960	acyl-CoA dehydrogenase activity
AC880_RS17485	COG1960	acyl-CoA dehydrogenase activity
AC880_RS17490	COG0277	FAD linked oxidase domain protein
AC880_RS17500	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS17525	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AC880_RS17535	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS17540	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS17545	COG1960	acyl-CoA dehydrogenase activity
AC880_RS17565	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AC880_RS17570	COG1024	Enoyl-CoA hydratase
AC880_RS17575	COG1960	acyl-CoA dehydrogenase activity
AC880_RS17595	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AC880_RS17600	COG0022	dehydrogenase e1 component
AC880_RS17605	COG1024	Enoyl-CoA hydratase
AC880_RS17610	COG0508	dehydrogenase complex catalyzes the overall conversion of
AC880_RS17630	COG0683	leucine binding
AC880_RS17635	COG0559	Belongs to the binding-protein-dependent transport system permease family
AC880_RS17640	COG0411	ABC transporter
AC880_RS17650	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AC880_RS17665	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS17695	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AC880_RS17700	COG0793	Belongs to the peptidase S41A family
AC880_RS17705	COG4942	peptidase
AC880_RS17710	COG0588	phosphoglycerate mutase activity
AC880_RS17715	COG1054	Belongs to the UPF0176 family
AC880_RS17720	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AC880_RS17725	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AC880_RS17730	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AC880_RS17735	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS17750	COG2226	methyltransferase
AC880_RS17755	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
AC880_RS17770	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS17775	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AC880_RS17800	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AC880_RS17825	COG1335	isochorismatase
AC880_RS17830	COG2309	aminopeptidase activity
AC880_RS17835	COG0596	Alpha beta hydrolase
AC880_RS17840	COG3473	Maleate cis-trans isomerase
AC880_RS17850	COG2068	MobA-Related Protein
AC880_RS17875	COG2204	response regulator
AC880_RS17880	COG5000	phosphorelay sensor kinase activity
AC880_RS17890	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AC880_RS17890	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AC880_RS17900	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
AC880_RS17930	COG0583	DNA-binding transcription factor activity
AC880_RS17945	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
AC880_RS17950	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AC880_RS17955	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS17970	COG0758	DNA mediated transformation
AC880_RS17975	COG1522	sequence-specific DNA binding
AC880_RS17985	COG0242	peptide deformylase activity
AC880_RS18000	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AC880_RS18010	COG0546	phosphoglycolate phosphatase activity
AC880_RS18030	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AC880_RS18035	COG1942	4-Oxalocrotonate Tautomerase
AC880_RS18040	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AC880_RS18065	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AC880_RS18085	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AC880_RS18090	COG1024	Enoyl-CoA hydratase
AC880_RS18095	COG1414	Transcriptional regulator
AC880_RS18100	COG0318	PFAM AMP-dependent synthetase and ligase
AC880_RS18105	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS18135	COG0583	DNA-binding transcription factor activity
AC880_RS18150	COG3422	double-strand break repair
AC880_RS18155	COG0330	HflC and HflK could
AC880_RS18165	COG0251	oxidation-reduction process
AC880_RS18210	COG3723	Recombinational DNA repair protein, rece pathway
AC880_RS18245	COG0582	viral genome integration into host DNA
AC880_RS18270	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AC880_RS18280	COG0706	membrane insertase activity
AC880_RS18285	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AC880_RS18290	COG0594	ribonuclease P activity
AC880_RS18295	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AC880_RS18300	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AC880_RS18315	COG1414	Transcriptional regulator
AC880_RS18320	COG0154	amidase activity
AC880_RS18335	COG1304	FMN binding
AC880_RS18355	COG1960	acyl-CoA dehydrogenase activity
AC880_RS18375	COG1960	acyl-CoA dehydrogenase activity
AC880_RS18390	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AC880_RS18405	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AC880_RS18410	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS18420	COG2358	TRAP transporter, solute receptor (TAXI family
AC880_RS18430	COG1629	transport
AC880_RS18435	COG2922	Belongs to the Smg family
AC880_RS18460	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AC880_RS18465	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS18470	COG1028	Short-chain dehydrogenase reductase Sdr
AC880_RS18475	COG1012	belongs to the aldehyde dehydrogenase family
AC880_RS18485	COG0028	Belongs to the TPP enzyme family
AC880_RS18490	COG1522	sequence-specific DNA binding
AC880_RS18495	COG3781	membrane
AC880_RS18505	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AC880_RS18525	COG4206	TonB-dependent receptor
AC880_RS18530	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AC880_RS18535	COG2022	thiamine diphosphate biosynthetic process
AC880_RS18540	COG0351	phosphomethylpyrimidine kinase
AC880_RS18545	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AC880_RS18560	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AC880_RS18570	COG0628	permease
AC880_RS18580	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AC880_RS18590	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AC880_RS18595	COG0049	tRNA binding
AC880_RS18600	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AC880_RS18605	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AC880_RS18610	COG0051	transcription antitermination factor activity, RNA binding
AC880_RS18615	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AC880_RS18620	COG0088	Forms part of the polypeptide exit tunnel
AC880_RS18625	COG0089	rRNA binding
AC880_RS18630	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AC880_RS18635	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AC880_RS18640	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AC880_RS18645	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AC880_RS18650	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AC880_RS18655	COG0255	Belongs to the universal ribosomal protein uL29 family
AC880_RS18660	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AC880_RS18680	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AC880_RS18685	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AC880_RS18690	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AC880_RS18695	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AC880_RS18700	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AC880_RS18705	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AC880_RS18710	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AC880_RS18715	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AC880_RS18720	COG1841	ribosomal large subunit assembly
AC880_RS18725	COG0200	Binds to the 23S rRNA
AC880_RS18730	COG0201	protein transport
AC880_RS18735	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AC880_RS18740	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AC880_RS18745	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AC880_RS18750	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AC880_RS18755	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
AC880_RS18760	COG0202	RNA polymerase activity
AC880_RS18765	COG0203	ribosomal protein L17
AC880_RS18770	COG0537	adenosine 5'-monophosphoramidase activity
AC880_RS18775	COG1324	tolerance protein
AC880_RS18780	COG4232	protein-disulfide reductase activity
AC880_RS18795	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AC880_RS18805	COG1333	cytochrome c biogenesis protein
AC880_RS18810	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AC880_RS18825	COG1965	Belongs to the frataxin family
AC880_RS18835	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AC880_RS18840	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AC880_RS18845	COG0232	Belongs to the dGTPase family. Type 2 subfamily
AC880_RS18860	COG2814	Major facilitator Superfamily
AC880_RS18865	COG0629	single-stranded DNA binding
AC880_RS18905	COG0402	S-adenosylhomocysteine deaminase activity
AC880_RS18915	COG0438	transferase activity, transferring glycosyl groups
AC880_RS18935	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS18960	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AC880_RS18965	COG2186	Transcriptional regulator
AC880_RS18985	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AC880_RS18990	COG1956	GAF domain-containing protein
AC880_RS18995	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AC880_RS19010	COG1652	LysM domain
AC880_RS19025	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AC880_RS19040	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AC880_RS19070	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS19085	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS19100	COG1024	Enoyl-CoA hydratase
AC880_RS19115	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS19120	COG1309	transcriptional regulator
AC880_RS19125	COG2816	NAD+ diphosphatase activity
AC880_RS19130	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AC880_RS19215	COG2814	Major facilitator Superfamily
AC880_RS19220	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AC880_RS19240	COG1999	signal sequence binding
AC880_RS19245	COG0109	protoheme IX farnesyltransferase activity
AC880_RS19285	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AC880_RS19305	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AC880_RS19310	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AC880_RS19320	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AC880_RS19325	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AC880_RS19335	COG0067	glutamate synthase
AC880_RS19335	COG0069	glutamate synthase activity
AC880_RS19335	COG0070	glutamate synthase
AC880_RS19345	COG3047	cAMP biosynthetic process
AC880_RS19355	COG1127	ABC transporter
AC880_RS19360	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AC880_RS19365	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AC880_RS19370	COG2853	Lipoprotein
AC880_RS19380	COG1131	(ABC) transporter
AC880_RS19385	COG0842	Transport permease protein
AC880_RS19395	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AC880_RS19400	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AC880_RS19405	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AC880_RS19410	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AC880_RS19415	COG0131	Imidazoleglycerol-phosphate dehydratase
AC880_RS19420	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AC880_RS19425	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
AC880_RS19430	COG0107	imidazoleglycerol-phosphate synthase activity
AC880_RS19435	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AC880_RS19440	COG0140	phosphoribosyl-ATP diphosphatase activity
AC880_RS19445	COG0537	adenosine 5'-monophosphoramidase activity
AC880_RS19450	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AC880_RS19455	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AC880_RS19470	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS19505	COG3702	type iv secretory pathway
AC880_RS19510	COG3451	type IV secretory pathway VirB4
AC880_RS19525	COG3736	Type IV secretory pathway, component VirB8
AC880_RS19530	COG3504	Conjugal transfer protein
AC880_RS19535	COG2948	multi-organism process
AC880_RS19540	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
AC880_RS19550	COG0697	spore germination
AC880_RS19570	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AC880_RS19575	COG0747	negative chemotaxis
AC880_RS19580	COG0601	transmembrane transport
AC880_RS19585	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AC880_RS19590	COG0444	Belongs to the ABC transporter superfamily
AC880_RS19600	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AC880_RS19610	COG0494	nUDIX hydrolase
AC880_RS19650	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
AC880_RS19655	COG0237	dephospho-CoA kinase activity
AC880_RS19660	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AC880_RS19675	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AC880_RS19680	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AC880_RS19690	COG0477	Major facilitator Superfamily
AC880_RS19695	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AC880_RS19710	COG1126	abc transporter atp-binding protein
AC880_RS19715	COG0765	amino acid transport
AC880_RS19720	COG4597	amino acid ABC transporter
AC880_RS19725	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AC880_RS19730	COG2884	Cell division ATP-binding protein ftsE
AC880_RS19735	COG2177	Part of the ABC transporter FtsEX involved in
AC880_RS19740	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AC880_RS19750	COG1194	a g-specific adenine glycosylase
AC880_RS19760	COG2226	methyltransferase
AC880_RS19770	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS19775	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS19790	COG1024	Enoyl-CoA hydratase
AC880_RS19810	COG1024	Enoyl-CoA hydratase
AC880_RS19815	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AC880_RS19820	COG3181	Tripartite tricarboxylate transporter family receptor
AC880_RS19830	COG0753	catalase activity
AC880_RS19835	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AC880_RS19840	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AC880_RS19850	COG2175	clavaminate synthase activity
AC880_RS19855	COG1473	amidohydrolase
AC880_RS19860	COG4608	Belongs to the ABC transporter superfamily
AC880_RS19865	COG0444	Belongs to the ABC transporter superfamily
AC880_RS19880	COG0747	negative chemotaxis
AC880_RS19885	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AC880_RS19920	COG0436	Aminotransferase
AC880_RS19925	COG1278	Cold shock