locus-tag class description C3D88_RS00005 PF01134 Glucose inhibited division protein A C3D88_RS00005 PF13932 GidA associated domain C3D88_RS00010 PF02527 rRNA small subunit methyltransferase G C3D88_RS00015 PF13614 AAA domain C3D88_RS00025 PF17762 HTH domain found in ParB protein C3D88_RS00025 PF02195 ParB-like nuclease domain C3D88_RS00050 PF03144 Elongation factor Tu domain 2 C3D88_RS00050 PF03143 Elongation factor Tu C-terminal domain C3D88_RS00050 PF00009 Elongation factor Tu GTP binding domain C3D88_RS00060 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C3D88_RS00065 PF00467 KOW motif C3D88_RS00065 PF02357 Transcription termination factor nusG C3D88_RS00070 PF00298 Ribosomal protein L11, RNA binding domain C3D88_RS00070 PF03946 Ribosomal protein L11, N-terminal domain C3D88_RS00075 PF00687 Ribosomal protein L1p/L10e family C3D88_RS00080 PF00466 Ribosomal protein L10 C3D88_RS00085 PF16320 Ribosomal protein L7/L12 dimerisation domain C3D88_RS00085 PF00542 Ribosomal protein L7/L12 C-terminal domain C3D88_RS00090 PF10385 RNA polymerase beta subunit external 1 domain C3D88_RS00090 PF04561 RNA polymerase Rpb2, domain 2 C3D88_RS00090 PF04563 RNA polymerase beta subunit C3D88_RS00090 PF00562 RNA polymerase Rpb2, domain 6 C3D88_RS00090 PF04560 RNA polymerase Rpb2, domain 7 C3D88_RS00090 PF04565 RNA polymerase Rpb2, domain 3 C3D88_RS00095 PF04983 RNA polymerase Rpb1, domain 3 C3D88_RS00095 PF04997 RNA polymerase Rpb1, domain 1 C3D88_RS00095 PF00623 RNA polymerase Rpb1, domain 2 C3D88_RS00095 PF04998 RNA polymerase Rpb1, domain 5 C3D88_RS00095 PF05000 RNA polymerase Rpb1, domain 4 C3D88_RS00125 PF00072 Response regulator receiver domain C3D88_RS00125 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS00135 PF02515 CoA-transferase family III C3D88_RS00150 PF01575 MaoC like domain C3D88_RS00155 PF03466 LysR substrate binding domain C3D88_RS00155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS00160 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS00180 PF02091 Glycyl-tRNA synthetase alpha subunit C3D88_RS00185 PF05746 DALR anticodon binding domain C3D88_RS00185 PF02092 Glycyl-tRNA synthetase beta subunit C3D88_RS00195 PF01553 Acyltransferase C3D88_RS00205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3D88_RS00210 PF01327 Polypeptide deformylase C3D88_RS00250 PF00561 alpha/beta hydrolase fold C3D88_RS00255 PF07021 Methionine biosynthesis protein MetW C3D88_RS00255 PF00561 alpha/beta hydrolase fold C3D88_RS00270 PF07690 Major Facilitator Superfamily C3D88_RS00280 PF01177 Asp/Glu/Hydantoin racemase C3D88_RS00285 PF00005 ABC transporter C3D88_RS00290 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS00295 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS00300 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS00335 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS00350 PF00970 Oxidoreductase FAD-binding domain C3D88_RS00350 PF00175 Oxidoreductase NAD-binding domain C3D88_RS00350 PF00111 2Fe-2S iron-sulfur cluster binding domain C3D88_RS00355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS00365 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS00395 PF00183 Hsp90 protein C3D88_RS00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS00400 PF00043 Glutathione S-transferase, C-terminal domain C3D88_RS00400 PF13417 Glutathione S-transferase, N-terminal domain C3D88_RS00405 PF01510 N-acetylmuramoyl-L-alanine amidase C3D88_RS00415 PF01578 Cytochrome C assembly protein C3D88_RS00420 PF00448 SRP54-type protein, GTPase domain C3D88_RS00420 PF02881 SRP54-type protein, helical bundle domain C3D88_RS00420 PF02978 Signal peptide binding domain C3D88_RS00435 PF02719 Polysaccharide biosynthesis protein C3D88_RS00445 PF10997 Alternate to MurJ C3D88_RS00450 PF00862 Sucrose synthase C3D88_RS00450 PF00534 Glycosyl transferases group 1 C3D88_RS00455 PF02397 Bacterial sugar transferase C3D88_RS00460 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C3D88_RS00470 PF02350 UDP-N-acetylglucosamine 2-epimerase C3D88_RS00475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C3D88_RS00480 PF00132 Bacterial transferase hexapeptide (six repeats) C3D88_RS00485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C3D88_RS00485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C3D88_RS00490 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C3D88_RS00495 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) C3D88_RS00495 PF00534 Glycosyl transferases group 1 C3D88_RS00505 PF03309 Type III pantothenate kinase C3D88_RS00515 PF02405 Permease MlaE C3D88_RS00520 PF00005 ABC transporter C3D88_RS00540 PF07943 Penicillin-binding protein 5, C-terminal domain C3D88_RS00540 PF00768 D-alanyl-D-alanine carboxypeptidase C3D88_RS00545 PF01063 Amino-transferase class IV C3D88_RS00550 PF04359 Protein of unknown function (DUF493) C3D88_RS00555 PF03099 Biotin/lipoate A/B protein ligase family C3D88_RS00560 PF04055 Radical SAM superfamily C3D88_RS00560 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family C3D88_RS00565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase C3D88_RS00570 PF04321 RmlD substrate binding domain C3D88_RS00575 PF16363 GDP-mannose 4,6 dehydratase C3D88_RS00590 PF01053 Cys/Met metabolism PLP-dependent enzyme C3D88_RS00595 PF01323 DSBA-like thioredoxin domain C3D88_RS00595 PF00085 Thioredoxin C3D88_RS00605 PF03485 Arginyl tRNA synthetase N terminal domain C3D88_RS00605 PF05746 DALR anticodon binding domain C3D88_RS00605 PF00750 tRNA synthetases class I (R) C3D88_RS00625 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS00630 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS00635 PF13416 Bacterial extracellular solute-binding protein C3D88_RS00640 PF00005 ABC transporter C3D88_RS00640 PF17912 MalK OB fold domain C3D88_RS00645 PF00149 Calcineurin-like phosphoesterase C3D88_RS00655 PF12857 TOBE-like domain C3D88_RS00655 PF00005 ABC transporter C3D88_RS00660 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS00675 PF00356 Bacterial regulatory proteins, lacI family C3D88_RS00685 PF01425 Amidase C3D88_RS00690 PF00682 HMGL-like C3D88_RS00690 PF08502 LeuA allosteric (dimerisation) domain C3D88_RS00700 PF04552 Sigma-54, DNA binding domain C3D88_RS00700 PF04963 Sigma-54 factor, core binding domain C3D88_RS00700 PF00309 Sigma-54 factor, Activator interacting domain (AID) C3D88_RS00710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS00710 PF03466 LysR substrate binding domain C3D88_RS00730 PF00585 C-terminal regulatory domain of Threonine dehydratase C3D88_RS00730 PF00291 Pyridoxal-phosphate dependent enzyme C3D88_RS00745 PF07729 FCD domain C3D88_RS00745 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS00750 PF02515 CoA-transferase family III C3D88_RS00760 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS00770 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS00785 PF02626 Carboxyltransferase domain, subdomain A and B C3D88_RS00790 PF02682 Carboxyltransferase domain, subdomain C and D C3D88_RS00800 PF03466 LysR substrate binding domain C3D88_RS00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS00805 PF01842 ACT domain C3D88_RS00805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3D88_RS00805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3D88_RS00815 PF00672 HAMP domain C3D88_RS00815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS00815 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS00820 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS00820 PF00072 Response regulator receiver domain C3D88_RS00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS00825 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS00825 PF00989 PAS fold C3D88_RS00825 PF11808 Phosphate regulon sensor protein PhoR C3D88_RS00830 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS00830 PF00072 Response regulator receiver domain C3D88_RS00835 PF01209 ubiE/COQ5 methyltransferase family C3D88_RS00850 PF03109 ABC1 family C3D88_RS00870 PF04536 TPM domain C3D88_RS00880 PF00270 DEAD/DEAH box helicase C3D88_RS00880 PF00271 Helicase conserved C-terminal domain C3D88_RS00885 PF01810 LysE type translocator C3D88_RS00890 PF16658 Class II release factor RF3, C-terminal domain C3D88_RS00890 PF03144 Elongation factor Tu domain 2 C3D88_RS00890 PF00009 Elongation factor Tu GTP binding domain C3D88_RS00900 PF00210 Ferritin-like domain C3D88_RS00930 PF00581 Rhodanese-like domain C3D88_RS00930 PF17773 UPF0176 acylphosphatase like domain C3D88_RS00935 PF09334 tRNA synthetases class I (M) C3D88_RS00935 PF01588 Putative tRNA binding domain C3D88_RS00945 PF10609 NUBPL iron-transfer P-loop NTPase C3D88_RS00960 PF00692 dUTPase C3D88_RS00985 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain C3D88_RS00985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain C3D88_RS00985 PF01276 Orn/Lys/Arg decarboxylase, major domain C3D88_RS01000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C3D88_RS01000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C3D88_RS01005 PF02535 ZIP Zinc transporter C3D88_RS01010 PF01571 Aminomethyltransferase folate-binding domain C3D88_RS01010 PF08669 Glycine cleavage T-protein C-terminal barrel domain C3D88_RS01015 PF01597 Glycine cleavage H-protein C3D88_RS01020 PF02347 Glycine cleavage system P-protein C3D88_RS01025 PF07729 FCD domain C3D88_RS01025 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS01030 PF02515 CoA-transferase family III C3D88_RS01060 PF12146 Serine aminopeptidase, S33 C3D88_RS01070 PF02426 Muconolactone delta-isomerase C3D88_RS01075 PF01144 Coenzyme A transferase C3D88_RS01080 PF01144 Coenzyme A transferase C3D88_RS01085 PF09339 IclR helix-turn-helix domain C3D88_RS01085 PF01614 Bacterial transcriptional regulator C3D88_RS01095 PF02667 Short chain fatty acid transporter C3D88_RS01100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3D88_RS01100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3D88_RS01105 PF00082 Subtilase family C3D88_RS01105 PF03797 Autotransporter beta-domain C3D88_RS01110 PF00311 Phosphoenolpyruvate carboxylase C3D88_RS01115 PF06508 Queuosine biosynthesis protein QueC C3D88_RS01145 PF01565 FAD binding domain C3D88_RS01145 PF02913 FAD linked oxidases, C-terminal domain C3D88_RS01150 PF00171 Aldehyde dehydrogenase family C3D88_RS01155 PF01964 Radical SAM ThiC family C3D88_RS01155 PF13667 ThiC-associated domain C3D88_RS01160 PF02355 Protein export membrane protein C3D88_RS01160 PF07549 SecD/SecF GG Motif C3D88_RS01165 PF09518 HindIII restriction endonuclease C3D88_RS01195 PF02627 Carboxymuconolactone decarboxylase family C3D88_RS01205 PF07702 UTRA domain C3D88_RS01205 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS01210 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS01215 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS01225 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS01230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C3D88_RS01235 PF12627 Probable RNA and SrmB- binding site of polymerase A C3D88_RS01235 PF12626 Polymerase A arginine-rich C-terminus C3D88_RS01235 PF01743 Poly A polymerase head domain C3D88_RS01245 PF00308 Bacterial dnaA protein C3D88_RS01250 PF02769 AIR synthase related protein, C-terminal domain C3D88_RS01250 PF00586 AIR synthase related protein, N-terminal domain C3D88_RS01260 PF01119 DNA mismatch repair protein, C-terminal domain C3D88_RS01260 PF08676 MutL C terminal dimerisation domain C3D88_RS01265 PF09335 SNARE associated Golgi protein C3D88_RS01270 PF11741 AMIN domain C3D88_RS01270 PF01520 N-acetylmuramoyl-L-alanine amidase C3D88_RS01275 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C3D88_RS01280 PF00206 Lyase C3D88_RS01280 PF10415 Fumarase C C-terminus C3D88_RS01290 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS01295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS01295 PF03466 LysR substrate binding domain C3D88_RS01305 PF02515 CoA-transferase family III C3D88_RS01310 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS01345 PF01654 Cytochrome bd terminal oxidase subunit I C3D88_RS01350 PF02322 Cytochrome bd terminal oxidase subunit II C3D88_RS01355 PF08173 Membrane bound YbgT-like protein C3D88_RS01360 PF00664 ABC transporter transmembrane region C3D88_RS01360 PF00005 ABC transporter C3D88_RS01365 PF00664 ABC transporter transmembrane region C3D88_RS01365 PF00005 ABC transporter C3D88_RS01370 PF00156 Phosphoribosyl transferase domain C3D88_RS01415 PF04386 Stringent starvation protein B C3D88_RS01420 PF00043 Glutathione S-transferase, C-terminal domain C3D88_RS01420 PF02798 Glutathione S-transferase, N-terminal domain C3D88_RS01425 PF02167 Cytochrome C1 family C3D88_RS01430 PF00032 Cytochrome b(C-terminal)/b6/petD C3D88_RS01430 PF00033 Cytochrome b/b6/petB C3D88_RS01435 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal C3D88_RS01435 PF00355 Rieske [2Fe-2S] domain C3D88_RS01440 PF01741 Large-conductance mechanosensitive channel, MscL C3D88_RS01445 PF01784 NIF3 (NGG1p interacting factor 3) C3D88_RS01450 PF13180 PDZ domain C3D88_RS01460 PF04299 Putative FMN-binding domain C3D88_RS01465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3D88_RS01470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS01475 PF07859 alpha/beta hydrolase fold C3D88_RS01485 PF00682 HMGL-like C3D88_RS01485 PF08502 LeuA allosteric (dimerisation) domain C3D88_RS01490 PF12833 Helix-turn-helix domain C3D88_RS01495 PF00920 Dehydratase family C3D88_RS01500 PF07690 Major Facilitator Superfamily C3D88_RS01505 PF03466 LysR substrate binding domain C3D88_RS01505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS01515 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) C3D88_RS01545 PF07859 alpha/beta hydrolase fold C3D88_RS01555 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS01560 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS01560 PF11862 Domain of unknown function (DUF3382) C3D88_RS01565 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS01565 PF00005 ABC transporter C3D88_RS01570 PF00005 ABC transporter C3D88_RS01585 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS01590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS01590 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS01590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS01595 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS01595 PF00501 AMP-binding enzyme C3D88_RS01615 PF00202 Aminotransferase class-III C3D88_RS01620 PF02581 Thiamine monophosphate synthase C3D88_RS01625 PF08543 Phosphomethylpyrimidine kinase C3D88_RS01630 PF00301 Rubredoxin C3D88_RS01635 PF02622 Uncharacterized ACR, COG1678 C3D88_RS01640 PF03652 Holliday junction resolvase C3D88_RS01645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3D88_RS01645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3D88_RS01650 PF01979 Amidohydrolase family C3D88_RS01655 PF01553 Acyltransferase C3D88_RS01660 PF00149 Calcineurin-like phosphoesterase C3D88_RS01670 PF00912 Transglycosylase C3D88_RS01685 PF00501 AMP-binding enzyme C3D88_RS01685 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS01690 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS01705 PF12706 Beta-lactamase superfamily domain C3D88_RS01710 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS01725 PF11737 Protein of unknown function (DUF3300) C3D88_RS01735 PF00990 Diguanylate cyclase, GGDEF domain C3D88_RS01735 PF00563 EAL domain C3D88_RS01735 PF03707 Bacterial signalling protein N terminal repeat C3D88_RS01740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3D88_RS01740 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C3D88_RS01745 PF13532 2OG-Fe(II) oxygenase superfamily C3D88_RS01750 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA C3D88_RS01755 PF04463 Protein of unknown function (DUF523) C3D88_RS01760 PF00005 ABC transporter C3D88_RS01765 PF01032 FecCD transport family C3D88_RS01770 PF01497 Periplasmic binding protein C3D88_RS01775 PF05171 Haemin-degrading HemS.ChuX domain C3D88_RS01780 PF00593 TonB dependent receptor C3D88_RS01780 PF04886 PT repeat C3D88_RS01780 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS01785 PF04773 FecR protein C3D88_RS01785 PF16220 Domain of unknown function (DUF4880) C3D88_RS01790 PF04542 Sigma-70 region 2 C3D88_RS01790 PF08281 Sigma-70, region 4 C3D88_RS01815 PF02423 Ornithine cyclodeaminase/mu-crystallin family C3D88_RS01825 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS01825 PF07729 FCD domain C3D88_RS01845 PF00171 Aldehyde dehydrogenase family C3D88_RS01855 PF00970 Oxidoreductase FAD-binding domain C3D88_RS01855 PF00175 Oxidoreductase NAD-binding domain C3D88_RS01855 PF00111 2Fe-2S iron-sulfur cluster binding domain C3D88_RS01880 PF03458 UPF0126 domain C3D88_RS01885 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C3D88_RS01885 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C3D88_RS01890 PF03372 Endonuclease/Exonuclease/phosphatase family C3D88_RS01895 PF00156 Phosphoribosyl transferase domain C3D88_RS01900 PF02934 GatB/GatE catalytic domain C3D88_RS01900 PF02637 GatB domain C3D88_RS01905 PF01425 Amidase C3D88_RS01910 PF02686 Glu-tRNAGln amidotransferase C subunit C3D88_RS01920 PF04085 rod shape-determining protein MreC C3D88_RS01930 PF03717 Penicillin-binding Protein dimerisation domain C3D88_RS01930 PF00905 Penicillin binding protein transpeptidase domain C3D88_RS01935 PF01098 Cell cycle protein C3D88_RS01940 PF02615 Malate/L-lactate dehydrogenase C3D88_RS01945 PF00939 Sodium:sulfate symporter transmembrane region C3D88_RS01950 PF00440 Bacterial regulatory proteins, tetR family C3D88_RS01960 PF00696 Amino acid kinase family C3D88_RS01965 PF03180 NLPA lipoprotein C3D88_RS01970 PF00578 AhpC/TSA family C3D88_RS01975 PF04972 BON domain C3D88_RS01980 PF13580 SIS domain C3D88_RS01985 PF02021 Uncharacterised protein family UPF0102 C3D88_RS01990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3D88_RS01995 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C3D88_RS01995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3D88_RS02015 PF02515 CoA-transferase family III C3D88_RS02020 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02025 PF02515 CoA-transferase family III C3D88_RS02040 PF09339 IclR helix-turn-helix domain C3D88_RS02045 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS02055 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3D88_RS02060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3D88_RS02060 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS02065 PF02515 CoA-transferase family III C3D88_RS02070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS02070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS02070 PF00205 Thiamine pyrophosphate enzyme, central domain C3D88_RS02075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS02075 PF03466 LysR substrate binding domain C3D88_RS02085 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02095 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02110 PF00892 EamA-like transporter family C3D88_RS02115 PF01810 LysE type translocator C3D88_RS02120 PF12146 Serine aminopeptidase, S33 C3D88_RS02140 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase C3D88_RS02145 PF00535 Glycosyl transferase family 2 C3D88_RS02160 PF03616 Sodium/glutamate symporter C3D88_RS02170 PF02667 Short chain fatty acid transporter C3D88_RS02185 PF00929 Exonuclease C3D88_RS02215 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS02220 PF03466 LysR substrate binding domain C3D88_RS02225 PF01565 FAD binding domain C3D88_RS02225 PF09330 D-lactate dehydrogenase, membrane binding C3D88_RS02230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS02230 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS02230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS02235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS02235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS02235 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS02240 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02245 PF07687 Peptidase dimerisation domain C3D88_RS02245 PF01546 Peptidase family M20/M25/M40 C3D88_RS02255 PF01042 Endoribonuclease L-PSP C3D88_RS02265 PF00107 Zinc-binding dehydrogenase C3D88_RS02265 PF08240 Alcohol dehydrogenase GroES-like domain C3D88_RS02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS02270 PF03466 LysR substrate binding domain C3D88_RS02275 PF13607 Succinyl-CoA ligase like flavodoxin domain C3D88_RS02275 PF13380 CoA binding domain C3D88_RS02280 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS02290 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02295 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family C3D88_RS02300 PF01380 SIS domain C3D88_RS02305 PF01037 Lrp/AsnC ligand binding domain C3D88_RS02310 PF00108 Thiolase, N-terminal domain C3D88_RS02310 PF02803 Thiolase, C-terminal domain C3D88_RS02315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3D88_RS02315 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS02315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3D88_RS02320 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3D88_RS02320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS02320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS02320 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS02325 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02330 PF13607 Succinyl-CoA ligase like flavodoxin domain C3D88_RS02330 PF13380 CoA binding domain C3D88_RS02330 PF00583 Acetyltransferase (GNAT) family C3D88_RS02345 PF01568 Molydopterin dinucleotide binding domain C3D88_RS02345 PF00384 Molybdopterin oxidoreductase C3D88_RS02365 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C3D88_RS02365 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C3D88_RS02365 PF01488 Shikimate / quinate 5-dehydrogenase C3D88_RS02370 PF00472 RF-1 domain C3D88_RS02370 PF03462 PCRF domain C3D88_RS02375 PF17827 PrmC N-terminal domain C3D88_RS02375 PF05175 Methyltransferase small domain C3D88_RS02380 PF00462 Glutaredoxin C3D88_RS02385 PF02441 Flavoprotein C3D88_RS02390 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02395 PF09084 NMT1/THI5 like C3D88_RS02400 PF03450 CO dehydrogenase flavoprotein C-terminal domain C3D88_RS02400 PF00941 FAD binding domain in molybdopterin dehydrogenase C3D88_RS02405 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C3D88_RS02405 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C3D88_RS02425 PF05036 Sporulation related domain C3D88_RS02425 PF03330 Lytic transglycolase C3D88_RS02430 PF03668 P-loop ATPase protein family C3D88_RS02440 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C3D88_RS02440 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C3D88_RS02440 PF00034 Cytochrome c C3D88_RS02445 PF07475 HPr Serine kinase C-terminal domain C3D88_RS02445 PF02603 HPr Serine kinase N terminus C3D88_RS02450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C3D88_RS02460 PF00005 ABC transporter C3D88_RS02480 PF01380 SIS domain C3D88_RS02480 PF00571 CBS domain C3D88_RS02485 PF01370 NAD dependent epimerase/dehydratase family C3D88_RS02485 PF02222 ATP-grasp domain C3D88_RS02520 PF00152 tRNA synthetases class II (D, K and N) C3D88_RS02520 PF01336 OB-fold nucleic acid binding domain C3D88_RS02520 PF02938 GAD domain C3D88_RS02525 PF03372 Endonuclease/Exonuclease/phosphatase family C3D88_RS02530 PF13091 PLD-like domain C3D88_RS02555 PF13458 Periplasmic binding protein C3D88_RS02560 PF01425 Amidase C3D88_RS02565 PF05995 Cysteine dioxygenase type I C3D88_RS02570 PF01614 Bacterial transcriptional regulator C3D88_RS02570 PF09339 IclR helix-turn-helix domain C3D88_RS02580 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS02580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3D88_RS02580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3D88_RS02585 PF05275 Copper resistance protein B precursor (CopB) C3D88_RS02590 PF07731 Multicopper oxidase C3D88_RS02590 PF00394 Multicopper oxidase C3D88_RS02590 PF07732 Multicopper oxidase C3D88_RS02630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS02630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS02630 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS02645 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS02650 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS02655 PF01256 Carbohydrate kinase C3D88_RS02675 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS02680 PF12911 N-terminal TM domain of oligopeptide transport permease C C3D88_RS02680 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS02685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS02685 PF00005 ABC transporter C3D88_RS02695 PF07687 Peptidase dimerisation domain C3D88_RS02695 PF01546 Peptidase family M20/M25/M40 C3D88_RS02705 PF13361 UvrD-like helicase C-terminal domain C3D88_RS02705 PF00580 UvrD/REP helicase N-terminal domain C3D88_RS02710 PF00270 DEAD/DEAH box helicase C3D88_RS02710 PF17764 3′ DNA-binding domain (3′BD) C3D88_RS02710 PF00271 Helicase conserved C-terminal domain C3D88_RS02710 PF18074 Primosomal protein N C-terminal domain C3D88_RS02710 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C3D88_RS02715 PF01208 Uroporphyrinogen decarboxylase (URO-D) C3D88_RS02725 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C3D88_RS02730 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3D88_RS02730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3D88_RS02735 PF00231 ATP synthase C3D88_RS02740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3D88_RS02740 PF00306 ATP synthase alpha/beta chain, C terminal domain C3D88_RS02740 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3D88_RS02745 PF00213 ATP synthase delta (OSCP) subunit C3D88_RS02750 PF00430 ATP synthase B/B' CF(0) C3D88_RS02755 PF00137 ATP synthase subunit C C3D88_RS02760 PF00119 ATP synthase A chain C3D88_RS02785 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS02790 PF17820 PDZ domain C3D88_RS02790 PF13180 PDZ domain C3D88_RS02795 PF13192 Thioredoxin domain C3D88_RS02795 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS02805 PF01171 PP-loop family C3D88_RS02815 PF01842 ACT domain C3D88_RS02815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3D88_RS02815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3D88_RS02820 PF13098 Thioredoxin-like domain C3D88_RS02820 PF10411 Disulfide bond isomerase protein N-terminus C3D88_RS02825 PF01494 FAD binding domain C3D88_RS02830 PF06725 3D domain C3D88_RS02830 PF03562 MltA specific insert domain C3D88_RS02835 PF04379 ApaG domain C3D88_RS02840 PF00834 Ribulose-phosphate 3 epimerase family C3D88_RS02845 PF13419 Haloacid dehalogenase-like hydrolase C3D88_RS02850 PF00425 chorismate binding enzyme C3D88_RS02850 PF04715 Anthranilate synthase component I, N terminal region C3D88_RS02855 PF00117 Glutamine amidotransferase class-I C3D88_RS02860 PF00591 Glycosyl transferase family, a/b domain C3D88_RS02860 PF02885 Glycosyl transferase family, helical bundle domain C3D88_RS02865 PF00218 Indole-3-glycerol phosphate synthase C3D88_RS02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS02890 PF03466 LysR substrate binding domain C3D88_RS02895 PF00551 Formyl transferase C3D88_RS02905 PF01613 Flavin reductase like domain C3D88_RS02910 PF01243 Pyridoxamine 5'-phosphate oxidase C3D88_RS02910 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C3D88_RS02920 PF07690 Major Facilitator Superfamily C3D88_RS02925 PF00899 ThiF family C3D88_RS02930 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS02930 PF07702 UTRA domain C3D88_RS02935 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS02935 PF00501 AMP-binding enzyme C3D88_RS02940 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS02955 PF01063 Amino-transferase class IV C3D88_RS02960 PF00425 chorismate binding enzyme C3D88_RS02960 PF04715 Anthranilate synthase component I, N terminal region C3D88_RS02965 PF17760 UvrA interaction domain C3D88_RS02965 PF17755 UvrA DNA-binding domain C3D88_RS02965 PF00005 ABC transporter C3D88_RS02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS02975 PF03466 LysR substrate binding domain C3D88_RS02980 PF00535 Glycosyl transferase family 2 C3D88_RS02985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS02990 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS03025 PF03776 Septum formation topological specificity factor MinE C3D88_RS03030 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C3D88_RS03035 PF03775 Septum formation inhibitor MinC, C-terminal domain C3D88_RS03035 PF05209 Septum formation inhibitor MinC, N-terminal domain C3D88_RS03040 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain C3D88_RS03040 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3D88_RS03045 PF01654 Cytochrome bd terminal oxidase subunit I C3D88_RS03055 PF13493 Domain of unknown function (DUF4118) C3D88_RS03055 PF02702 Osmosensitive K+ channel His kinase sensor domain C3D88_RS03055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS03060 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS03060 PF00072 Response regulator receiver domain C3D88_RS03075 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS03080 PF04391 Protein of unknown function (DUF533) C3D88_RS03100 PF01464 Transglycosylase SLT domain C3D88_RS03100 PF01476 LysM domain C3D88_RS03105 PF00753 Metallo-beta-lactamase superfamily C3D88_RS03105 PF16123 Hydroxyacylglutathione hydrolase C-terminus C3D88_RS03110 PF08241 Methyltransferase domain C3D88_RS03115 PF00075 RNase H C3D88_RS03165 PF01575 MaoC like domain C3D88_RS03180 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS03185 PF00106 short chain dehydrogenase C3D88_RS03195 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS03195 PF00005 ABC transporter C3D88_RS03200 PF00005 ABC transporter C3D88_RS03205 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS03215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS03215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS03215 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS03220 PF08361 MAATS-type transcriptional repressor, C-terminal region C3D88_RS03220 PF00440 Bacterial regulatory proteins, tetR family C3D88_RS03225 PF00501 AMP-binding enzyme C3D88_RS03225 PF14535 AMP-binding enzyme C-terminal domain C3D88_RS03230 PF02515 CoA-transferase family III C3D88_RS03250 PF04285 Protein of unknown function (DUF444) C3D88_RS03255 PF04293 SpoVR like protein C3D88_RS03270 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS03275 PF05034 Methylaspartate ammonia-lyase N-terminus C3D88_RS03275 PF07476 Methylaspartate ammonia-lyase C-terminus C3D88_RS03280 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS03280 PF07702 UTRA domain C3D88_RS03300 PF09278 MerR, DNA binding C3D88_RS03300 PF00376 MerR family regulatory protein C3D88_RS03310 PF01774 UreD urease accessory protein C3D88_RS03315 PF00547 Urease, gamma subunit C3D88_RS03320 PF04955 HupE / UreJ protein C3D88_RS03325 PF00699 Urease beta subunit C3D88_RS03330 PF00449 Urease alpha-subunit, N-terminal domain C3D88_RS03330 PF01979 Amidohydrolase family C3D88_RS03335 PF05194 UreE urease accessory protein, C-terminal domain C3D88_RS03335 PF02814 UreE urease accessory protein, N-terminal domain C3D88_RS03340 PF01730 UreF C3D88_RS03345 PF02492 CobW/HypB/UreG, nucleotide-binding domain C3D88_RS03355 PF07364 Metallopeptidase family M81 C3D88_RS03355 PF07171 MlrC C-terminus C3D88_RS03365 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS03370 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS03375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS03385 PF00202 Aminotransferase class-III C3D88_RS03390 PF00155 Aminotransferase class I and II C3D88_RS03390 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS03395 PF00186 Dihydrofolate reductase C3D88_RS03400 PF00303 Thymidylate synthase C3D88_RS03410 PF03232 Ubiquinone biosynthesis protein COQ7 C3D88_RS03415 PF00953 Glycosyl transferase family 4 C3D88_RS03420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C3D88_RS03420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C3D88_RS03420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C3D88_RS03425 PF01370 NAD dependent epimerase/dehydratase family C3D88_RS03430 PF03023 Lipid II flippase MurJ C3D88_RS03435 PF13439 Glycosyltransferase Family 4 C3D88_RS03435 PF00534 Glycosyl transferases group 1 C3D88_RS03440 PF13537 Glutamine amidotransferase domain C3D88_RS03440 PF00733 Asparagine synthase C3D88_RS03445 PF13439 Glycosyltransferase Family 4 C3D88_RS03445 PF00534 Glycosyl transferases group 1 C3D88_RS03450 PF13439 Glycosyltransferase Family 4 C3D88_RS03450 PF00534 Glycosyl transferases group 1 C3D88_RS03455 PF13477 Glycosyl transferase 4-like C3D88_RS03455 PF00534 Glycosyl transferases group 1 C3D88_RS03460 PF00342 Phosphoglucose isomerase C3D88_RS03465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3D88_RS03465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3D88_RS03465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3D88_RS03465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3D88_RS03475 PF02913 FAD linked oxidases, C-terminal domain C3D88_RS03475 PF01565 FAD binding domain C3D88_RS03480 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS03480 PF00072 Response regulator receiver domain C3D88_RS03485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS03485 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS03485 PF08521 Two-component sensor kinase N-terminal C3D88_RS03490 PF00884 Sulfatase C3D88_RS03500 PF04209 homogentisate 1,2-dioxygenase C3D88_RS03505 PF03466 LysR substrate binding domain C3D88_RS03505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS03515 PF01494 FAD binding domain C3D88_RS03525 PF06827 Zinc finger found in FPG and IleRS C3D88_RS03525 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C3D88_RS03525 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C3D88_RS03535 PF03550 Outer membrane lipoprotein LolB C3D88_RS03540 PF00288 GHMP kinases N terminal domain C3D88_RS03540 PF08544 GHMP kinases C terminal C3D88_RS03550 PF14572 Phosphoribosyl synthetase-associated domain C3D88_RS03550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C3D88_RS03555 PF14693 Ribosomal protein TL5, C-terminal domain C3D88_RS03555 PF01386 Ribosomal L25p family C3D88_RS03560 PF01195 Peptidyl-tRNA hydrolase C3D88_RS03570 PF06071 Protein of unknown function (DUF933) C3D88_RS03570 PF01926 50S ribosome-binding GTPase C3D88_RS03575 PF13356 Arm DNA-binding domain C3D88_RS03575 PF00589 Phage integrase family C3D88_RS03610 PF13175 AAA ATPase domain C3D88_RS03645 PF00580 UvrD/REP helicase N-terminal domain C3D88_RS03645 PF13361 UvrD-like helicase C-terminal domain C3D88_RS03665 PF12951 Passenger-associated-transport-repeat C3D88_RS03675 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS03675 PF00072 Response regulator receiver domain C3D88_RS03690 PF17938 Tetracyclin repressor-like, C-terminal domain C3D88_RS03690 PF00440 Bacterial regulatory proteins, tetR family C3D88_RS03720 PF01266 FAD dependent oxidoreductase C3D88_RS03735 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS03790 PF00561 alpha/beta hydrolase fold C3D88_RS03800 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS03805 PF03459 TOBE domain C3D88_RS03805 PF00005 ABC transporter C3D88_RS03810 PF13091 PLD-like domain C3D88_RS03820 PF03167 Uracil DNA glycosylase superfamily C3D88_RS03825 PF00270 DEAD/DEAH box helicase C3D88_RS03825 PF00271 Helicase conserved C-terminal domain C3D88_RS03835 PF12627 Probable RNA and SrmB- binding site of polymerase A C3D88_RS03835 PF01743 Poly A polymerase head domain C3D88_RS03840 PF14718 Soluble lytic murein transglycosylase L domain C3D88_RS03840 PF01464 Transglycosylase SLT domain C3D88_RS03850 PF07690 Major Facilitator Superfamily C3D88_RS03850 PF00083 Sugar (and other) transporter C3D88_RS03855 PF00850 Histone deacetylase domain C3D88_RS03860 PF03466 LysR substrate binding domain C3D88_RS03860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS03870 PF02219 Methylenetetrahydrofolate reductase C3D88_RS03875 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV C3D88_RS03880 PF05221 S-adenosyl-L-homocysteine hydrolase C3D88_RS03880 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C3D88_RS03885 PF00534 Glycosyl transferases group 1 C3D88_RS03885 PF13439 Glycosyltransferase Family 4 C3D88_RS03895 PF00438 S-adenosylmethionine synthetase, N-terminal domain C3D88_RS03895 PF02772 S-adenosylmethionine synthetase, central domain C3D88_RS03895 PF02773 S-adenosylmethionine synthetase, C-terminal domain C3D88_RS03905 PF03279 Bacterial lipid A biosynthesis acyltransferase C3D88_RS03910 PF01678 Diaminopimelate epimerase C3D88_RS03920 PF02899 Phage integrase, N-terminal SAM-like domain C3D88_RS03920 PF00589 Phage integrase family C3D88_RS03925 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS03925 PF00593 TonB dependent receptor C3D88_RS03930 PF03824 High-affinity nickel-transport protein C3D88_RS03940 PF01297 Zinc-uptake complex component A periplasmic C3D88_RS03945 PF00950 ABC 3 transport family C3D88_RS03950 PF00005 ABC transporter C3D88_RS03955 PF01475 Ferric uptake regulator family C3D88_RS03960 PF07683 Cobalamin synthesis protein cobW C-terminal domain C3D88_RS03960 PF02492 CobW/HypB/UreG, nucleotide-binding domain C3D88_RS03965 PF01258 Prokaryotic dksA/traR C4-type zinc finger C3D88_RS03970 PF00227 Proteasome subunit C3D88_RS03975 PF00004 ATPase family associated with various cellular activities (AAA) C3D88_RS03975 PF07724 AAA domain (Cdc48 subfamily) C3D88_RS03975 PF10431 C-terminal, D2-small domain, of ClpB protein C3D88_RS03990 PF01923 Cobalamin adenosyltransferase C3D88_RS04010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3D88_RS04010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3D88_RS04020 PF01970 Tripartite tricarboxylate transporter TctA family C3D88_RS04060 PF01790 Prolipoprotein diacylglyceryl transferase C3D88_RS04065 PF00920 Dehydratase family C3D88_RS04070 PF00034 Cytochrome c C3D88_RS04075 PF01625 Peptide methionine sulfoxide reductase C3D88_RS04080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3D88_RS04085 PF01037 Lrp/AsnC ligand binding domain C3D88_RS04125 PF01546 Peptidase family M20/M25/M40 C3D88_RS04125 PF07687 Peptidase dimerisation domain C3D88_RS04130 PF01979 Amidohydrolase family C3D88_RS04135 PF16326 ABC transporter C-terminal domain C3D88_RS04135 PF00005 ABC transporter C3D88_RS04135 PF12848 ABC transporter C3D88_RS04145 PF02381 MraZ protein, putative antitoxin-like C3D88_RS04150 PF01795 MraW methylase family C3D88_RS04155 PF04999 Cell division protein FtsL C3D88_RS04160 PF00905 Penicillin binding protein transpeptidase domain C3D88_RS04160 PF03717 Penicillin-binding Protein dimerisation domain C3D88_RS04165 PF08245 Mur ligase middle domain C3D88_RS04165 PF02875 Mur ligase family, glutamate ligase domain C3D88_RS04170 PF00953 Glycosyl transferase family 4 C3D88_RS04175 PF02875 Mur ligase family, glutamate ligase domain C3D88_RS04175 PF08245 Mur ligase middle domain C3D88_RS04180 PF01098 Cell cycle protein C3D88_RS04185 PF03033 Glycosyltransferase family 28 N-terminal domain C3D88_RS04185 PF04101 Glycosyltransferase family 28 C-terminal domain C3D88_RS04190 PF01225 Mur ligase family, catalytic domain C3D88_RS04190 PF08245 Mur ligase middle domain C3D88_RS04190 PF02875 Mur ligase family, glutamate ligase domain C3D88_RS04195 PF01820 D-ala D-ala ligase N-terminus C3D88_RS04195 PF07478 D-ala D-ala ligase C-terminus C3D88_RS04200 PF03799 Cell division protein FtsQ C3D88_RS04200 PF08478 POTRA domain, FtsQ-type C3D88_RS04205 PF02491 SHS2 domain inserted in FTSA C3D88_RS04210 PF12327 FtsZ family, C-terminal domain C3D88_RS04210 PF00091 Tubulin/FtsZ family, GTPase domain C3D88_RS04215 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C3D88_RS04225 PF01551 Peptidase family M23 C3D88_RS04225 PF08525 Opacity-associated protein A N-terminal motif C3D88_RS04225 PF01476 LysM domain C3D88_RS04230 PF02810 SEC-C motif C3D88_RS04230 PF07517 SecA DEAD-like domain C3D88_RS04230 PF07516 SecA Wing and Scaffold domain C3D88_RS04230 PF01043 SecA preprotein cross-linking domain C3D88_RS04240 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS04250 PF00106 short chain dehydrogenase C3D88_RS04255 PF01266 FAD dependent oxidoreductase C3D88_RS04260 PF01037 Lrp/AsnC ligand binding domain C3D88_RS04270 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP C3D88_RS04280 PF01488 Shikimate / quinate 5-dehydrogenase C3D88_RS04280 PF08501 Shikimate dehydrogenase substrate binding domain C3D88_RS04280 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C3D88_RS04290 PF00773 RNB domain C3D88_RS04295 PF05728 Uncharacterised protein family (UPF0227) C3D88_RS04300 PF02875 Mur ligase family, glutamate ligase domain C3D88_RS04300 PF01225 Mur ligase family, catalytic domain C3D88_RS04300 PF08245 Mur ligase middle domain C3D88_RS04305 PF08534 Redoxin C3D88_RS04310 PF01220 Dehydroquinase class II C3D88_RS04315 PF00364 Biotin-requiring enzyme C3D88_RS04320 PF00289 Biotin carboxylase, N-terminal domain C3D88_RS04320 PF02785 Biotin carboxylase C-terminal domain C3D88_RS04320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3D88_RS04335 PF00294 pfkB family carbohydrate kinase C3D88_RS04360 PF03062 MBOAT, membrane-bound O-acyltransferase family C3D88_RS04365 PF00501 AMP-binding enzyme C3D88_RS04365 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS04380 PF00268 Ribonucleotide reductase, small chain C3D88_RS04385 PF00317 Ribonucleotide reductase, all-alpha domain C3D88_RS04385 PF02867 Ribonucleotide reductase, barrel domain C3D88_RS04385 PF03477 ATP cone domain C3D88_RS04400 PF01037 Lrp/AsnC ligand binding domain C3D88_RS04415 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3D88_RS04420 PF13607 Succinyl-CoA ligase like flavodoxin domain C3D88_RS04420 PF13380 CoA binding domain C3D88_RS04420 PF00583 Acetyltransferase (GNAT) family C3D88_RS04435 PF07729 FCD domain C3D88_RS04435 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS04445 PF00271 Helicase conserved C-terminal domain C3D88_RS04445 PF00270 DEAD/DEAH box helicase C3D88_RS04445 PF03880 DbpA RNA binding domain C3D88_RS04450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3D88_RS04455 PF00857 Isochorismatase family C3D88_RS04460 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS04465 PF00005 ABC transporter C3D88_RS04475 PF02230 Phospholipase/Carboxylesterase C3D88_RS04480 PF04751 Protein of unknown function (DUF615) C3D88_RS04485 PF01523 Putative modulator of DNA gyrase C3D88_RS04490 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS04495 PF00572 Ribosomal protein L13 C3D88_RS04500 PF00380 Ribosomal protein S9/S16 C3D88_RS04505 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3D88_RS04505 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3D88_RS04515 PF01521 Iron-sulphur cluster biosynthesis C3D88_RS04520 PF03702 Anhydro-N-acetylmuramic acid kinase C3D88_RS04525 PF01551 Peptidase family M23 C3D88_RS04525 PF08460 Bacterial SH3 domain C3D88_RS04535 PF01479 S4 domain C3D88_RS04535 PF00579 tRNA synthetases class I (W and Y) C3D88_RS04545 PF00464 Serine hydroxymethyltransferase C3D88_RS04550 PF03477 ATP cone domain C3D88_RS04565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C3D88_RS04565 PF01872 RibD C-terminal domain C3D88_RS04585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS04585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS04585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS04585 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS04585 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS04585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS04595 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS04600 PF03466 LysR substrate binding domain C3D88_RS04605 PF02515 CoA-transferase family III C3D88_RS04625 PF02678 Pirin C3D88_RS04625 PF05726 Pirin C-terminal cupin domain C3D88_RS04640 PF00072 Response regulator receiver domain C3D88_RS04645 PF06481 COX Aromatic Rich Motif C3D88_RS04645 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C3D88_RS04650 PF00115 Cytochrome C and Quinol oxidase polypeptide I C3D88_RS04655 PF00510 Cytochrome c oxidase subunit III C3D88_RS04660 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C3D88_RS04665 PF01022 Bacterial regulatory protein, arsR family C3D88_RS04685 PF05114 Protein of unknown function (DUF692) C3D88_RS04700 PF00593 TonB dependent receptor C3D88_RS04700 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS04715 PF01551 Peptidase family M23 C3D88_RS04715 PF01476 LysM domain C3D88_RS04730 PF04461 Protein of unknown function (DUF520) C3D88_RS04740 PF08281 Sigma-70, region 4 C3D88_RS04740 PF04542 Sigma-70 region 2 C3D88_RS04760 PF00795 Carbon-nitrogen hydrolase C3D88_RS04765 PF01523 Putative modulator of DNA gyrase C3D88_RS04770 PF00793 DAHP synthetase I family C3D88_RS04775 PF13332 Hemagglutinin repeat C3D88_RS04775 PF05860 haemagglutination activity domain C3D88_RS04775 PF13018 Extended Signal Peptide of Type V secretion system C3D88_RS04775 PF05594 Haemagluttinin repeat C3D88_RS04775 PF13332 Hemagglutinin repeat C3D88_RS04775 PF05860 haemagglutination activity domain C3D88_RS04775 PF13018 Extended Signal Peptide of Type V secretion system C3D88_RS04775 PF05594 Haemagluttinin repeat C3D88_RS04780 PF02913 FAD linked oxidases, C-terminal domain C3D88_RS04780 PF01565 FAD binding domain C3D88_RS04785 PF01565 FAD binding domain C3D88_RS04785 PF02913 FAD linked oxidases, C-terminal domain C3D88_RS04790 PF01565 FAD binding domain C3D88_RS04795 PF13183 4Fe-4S dicluster domain C3D88_RS04795 PF02754 Cysteine-rich domain C3D88_RS04800 PF00756 Putative esterase C3D88_RS04805 PF00593 TonB dependent receptor C3D88_RS04805 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS04815 PF02233 NAD(P) transhydrogenase beta subunit C3D88_RS04825 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C3D88_RS04825 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C3D88_RS04835 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS04840 PF03466 LysR substrate binding domain C3D88_RS04840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS04850 PF01925 Sulfite exporter TauE/SafE C3D88_RS04855 PF00043 Glutathione S-transferase, C-terminal domain C3D88_RS04855 PF13417 Glutathione S-transferase, N-terminal domain C3D88_RS04860 PF08328 Adenylosuccinate lyase C-terminal C3D88_RS04860 PF00206 Lyase C3D88_RS04865 PF01322 Cytochrome C' C3D88_RS04885 PF01594 AI-2E family transporter C3D88_RS04895 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS04895 PF07729 FCD domain C3D88_RS04905 PF01425 Amidase C3D88_RS04910 PF02515 CoA-transferase family III C3D88_RS04915 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS04930 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS04935 PF00005 ABC transporter C3D88_RS04950 PF01614 Bacterial transcriptional regulator C3D88_RS04950 PF09339 IclR helix-turn-helix domain C3D88_RS04960 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS04960 PF00501 AMP-binding enzyme C3D88_RS04965 PF01042 Endoribonuclease L-PSP C3D88_RS04970 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS04985 PF00005 ABC transporter C3D88_RS05005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS05005 PF03466 LysR substrate binding domain C3D88_RS05015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C3D88_RS05020 PF07690 Major Facilitator Superfamily C3D88_RS05025 PF03466 LysR substrate binding domain C3D88_RS05025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS05040 PF01425 Amidase C3D88_RS05045 PF00677 Lumazine binding domain C3D88_RS05050 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS05055 PF01037 Lrp/AsnC ligand binding domain C3D88_RS05055 PF13404 AsnC-type helix-turn-helix domain C3D88_RS05065 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS05065 PF00501 AMP-binding enzyme C3D88_RS05075 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS05080 PF00005 ABC transporter C3D88_RS05095 PF00107 Zinc-binding dehydrogenase C3D88_RS05095 PF08240 Alcohol dehydrogenase GroES-like domain C3D88_RS05115 PF00403 Heavy-metal-associated domain C3D88_RS05120 PF01966 HD domain C3D88_RS05125 PF00155 Aminotransferase class I and II C3D88_RS05130 PF03466 LysR substrate binding domain C3D88_RS05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS05140 PF00083 Sugar (and other) transporter C3D88_RS05160 PF13609 Gram-negative porin C3D88_RS05165 PF02548 Ketopantoate hydroxymethyltransferase C3D88_RS05170 PF03466 LysR substrate binding domain C3D88_RS05170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS05235 PF00440 Bacterial regulatory proteins, tetR family C3D88_RS05245 PF05170 AsmA family C3D88_RS05250 PF03352 Methyladenine glycosylase C3D88_RS05255 PF00376 MerR family regulatory protein C3D88_RS05255 PF09278 MerR, DNA binding C3D88_RS05270 PF01547 Bacterial extracellular solute-binding protein C3D88_RS05285 PF08402 TOBE domain C3D88_RS05285 PF00005 ABC transporter C3D88_RS05290 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS05295 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS05295 PF14785 Maltose transport system permease protein MalF P2 domain C3D88_RS05315 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS05320 PF07729 FCD domain C3D88_RS05320 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS05350 PF00465 Iron-containing alcohol dehydrogenase C3D88_RS05365 PF03180 NLPA lipoprotein C3D88_RS05370 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS05375 PF00005 ABC transporter C3D88_RS05375 PF09383 NIL domain C3D88_RS05380 PF13802 Galactose mutarotase-like C3D88_RS05380 PF01055 Glycosyl hydrolases family 31 C3D88_RS05390 PF00459 Inositol monophosphatase family C3D88_RS05405 PF00501 AMP-binding enzyme C3D88_RS05405 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS05410 PF01546 Peptidase family M20/M25/M40 C3D88_RS05410 PF07687 Peptidase dimerisation domain C3D88_RS05415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS05415 PF03466 LysR substrate binding domain C3D88_RS05420 PF03601 Conserved hypothetical protein 698 C3D88_RS05425 PF03061 Thioesterase superfamily C3D88_RS05430 PF03448 MgtE intracellular N domain C3D88_RS05430 PF00571 CBS domain C3D88_RS05430 PF01769 Divalent cation transporter C3D88_RS05450 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS05460 PF02609 Exonuclease VII small subunit C3D88_RS05465 PF00348 Polyprenyl synthetase C3D88_RS05470 PF02779 Transketolase, pyrimidine binding domain C3D88_RS05470 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C3D88_RS05470 PF02780 Transketolase, C-terminal domain C3D88_RS05475 PF02649 Type I GTP cyclohydrolase folE2 C3D88_RS05480 PF01250 Ribosomal protein S6 C3D88_RS05490 PF01084 Ribosomal protein S18 C3D88_RS05495 PF01281 Ribosomal protein L9, N-terminal domain C3D88_RS05495 PF03948 Ribosomal protein L9, C-terminal domain C3D88_RS05505 PF00772 DnaB-like helicase N terminal domain C3D88_RS05505 PF03796 DnaB-like helicase C terminal domain C3D88_RS05510 PF13593 SBF-like CPA transporter family (DUF4137) C3D88_RS05515 PF04166 Pyridoxal phosphate biosynthetic protein PdxA C3D88_RS05520 PF02562 PhoH-like protein C3D88_RS05520 PF13638 PIN domain C3D88_RS05525 PF00578 AhpC/TSA family C3D88_RS05530 PF04430 Protein of unknown function (DUF498/DUF598) C3D88_RS05535 PF00155 Aminotransferase class I and II C3D88_RS05540 PF01842 ACT domain C3D88_RS05540 PF00742 Homoserine dehydrogenase C3D88_RS05540 PF03447 Homoserine dehydrogenase, NAD binding domain C3D88_RS05545 PF00291 Pyridoxal-phosphate dependent enzyme C3D88_RS05545 PF14821 Threonine synthase N terminus C3D88_RS05560 PF02615 Malate/L-lactate dehydrogenase C3D88_RS05590 PF03328 HpcH/HpaI aldolase/citrate lyase family C3D88_RS05595 PF01649 Ribosomal protein S20 C3D88_RS05605 PF03023 Lipid II flippase MurJ C3D88_RS05610 PF00106 short chain dehydrogenase C3D88_RS05615 PF05191 Adenylate kinase, active site lid C3D88_RS05620 PF02348 Cytidylyltransferase C3D88_RS05625 PF03966 Trm112p-like protein C3D88_RS05630 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C3D88_RS05635 PF02472 Biopolymer transport protein ExbD/TolR C3D88_RS05640 PF01618 MotA/TolQ/ExbB proton channel family C3D88_RS05650 PF13742 OB-fold nucleic acid binding domain C3D88_RS05650 PF02601 Exonuclease VII, large subunit C3D88_RS05655 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C3D88_RS05655 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C3D88_RS05660 PF00654 Voltage gated chloride channel C3D88_RS05665 PF02803 Thiolase, C-terminal domain C3D88_RS05665 PF00108 Thiolase, N-terminal domain C3D88_RS05675 PF00313 'Cold-shock' DNA-binding domain C3D88_RS05680 PF02617 ATP-dependent Clp protease adaptor protein ClpS C3D88_RS05685 PF07703 Alpha-2-macroglobulin bait region domain C3D88_RS05685 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain C3D88_RS05685 PF11974 Bacterial alpha-2-macroglobulin MG3 domain C3D88_RS05685 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain C3D88_RS05685 PF17962 Bacterial macroglobulin domain 6 C3D88_RS05685 PF01835 MG2 domain C3D88_RS05685 PF00207 Alpha-2-macroglobulin family C3D88_RS05685 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain C3D88_RS05690 PF00912 Transglycosylase C3D88_RS05690 PF00905 Penicillin binding protein transpeptidase domain C3D88_RS05690 PF06832 Penicillin-Binding Protein C-terminus Family C3D88_RS05695 PF00004 ATPase family associated with various cellular activities (AAA) C3D88_RS05695 PF07724 AAA domain (Cdc48 subfamily) C3D88_RS05695 PF17871 AAA lid domain C3D88_RS05695 PF10431 C-terminal, D2-small domain, of ClpB protein C3D88_RS05695 PF02861 Clp amino terminal domain, pathogenicity island component C3D88_RS05700 PF04403 Paraquat-inducible protein A C3D88_RS05705 PF02470 MlaD protein C3D88_RS05715 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C3D88_RS05715 PF01619 Proline dehydrogenase C3D88_RS05715 PF14850 DNA-binding domain of Proline dehydrogenase C3D88_RS05715 PF00171 Aldehyde dehydrogenase family C3D88_RS05725 PF13458 Periplasmic binding protein C3D88_RS05730 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS05735 PF11862 Domain of unknown function (DUF3382) C3D88_RS05735 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS05740 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS05740 PF00005 ABC transporter C3D88_RS05745 PF00005 ABC transporter C3D88_RS05750 PF07690 Major Facilitator Superfamily C3D88_RS05755 PF00440 Bacterial regulatory proteins, tetR family C3D88_RS05770 PF00543 Nitrogen regulatory protein P-II C3D88_RS05775 PF04380 Membrane fusogenic activity C3D88_RS05790 PF00083 Sugar (and other) transporter C3D88_RS05790 PF07690 Major Facilitator Superfamily C3D88_RS05800 PF00115 Cytochrome C and Quinol oxidase polypeptide I C3D88_RS05805 PF00510 Cytochrome c oxidase subunit III C3D88_RS05810 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C3D88_RS05815 PF02104 SURF1 family C3D88_RS05840 PF13411 MerR HTH family regulatory protein C3D88_RS05845 PF00403 Heavy-metal-associated domain C3D88_RS05865 PF06968 Biotin and Thiamin Synthesis associated domain C3D88_RS05865 PF04055 Radical SAM superfamily C3D88_RS05880 PF08534 Redoxin C3D88_RS05890 PF01738 Dienelactone hydrolase family C3D88_RS05900 PF01967 MoaC family C3D88_RS05910 PF02391 MoaE protein C3D88_RS05915 PF00994 Probable molybdopterin binding domain C3D88_RS05920 PF03453 MoeA N-terminal region (domain I and II) C3D88_RS05920 PF03454 MoeA C-terminal region (domain IV) C3D88_RS05920 PF00994 Probable molybdopterin binding domain C3D88_RS05925 PF04055 Radical SAM superfamily C3D88_RS05925 PF06463 Molybdenum Cofactor Synthesis C C3D88_RS05945 PF00206 Lyase C3D88_RS05945 PF14698 Argininosuccinate lyase C-terminal C3D88_RS05950 PF00924 Mechanosensitive ion channel C3D88_RS05955 PF02540 NAD synthase C3D88_RS05955 PF00795 Carbon-nitrogen hydrolase C3D88_RS05960 PF00543 Nitrogen regulatory protein P-II C3D88_RS05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS05985 PF03466 LysR substrate binding domain C3D88_RS05995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS06000 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS06015 PF03193 RsgA GTPase C3D88_RS06020 PF01435 Peptidase family M48 C3D88_RS06025 PF00929 Exonuclease C3D88_RS06030 PF03853 YjeF-related protein N-terminus C3D88_RS06035 PF08223 PaaX-like protein C-terminal domain C3D88_RS06035 PF07848 PaaX-like protein C3D88_RS06040 PF05138 Phenylacetic acid catabolic protein C3D88_RS06045 PF06243 Phenylacetic acid degradation B C3D88_RS06050 PF05138 Phenylacetic acid catabolic protein C3D88_RS06055 PF01883 Iron-sulfur cluster assembly protein C3D88_RS06075 PF00171 Aldehyde dehydrogenase family C3D88_RS06080 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS06085 PF03061 Thioesterase superfamily C3D88_RS06090 PF14535 AMP-binding enzyme C-terminal domain C3D88_RS06090 PF00501 AMP-binding enzyme C3D88_RS06095 PF16970 Type-1 fimbrial protein, A C3D88_RS06115 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS06120 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS06120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C3D88_RS06125 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C3D88_RS06130 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C3D88_RS06130 PF02769 AIR synthase related protein, C-terminal domain C3D88_RS06130 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal C3D88_RS06135 PF05860 haemagglutination activity domain C3D88_RS06135 PF05594 Haemagluttinin repeat C3D88_RS06135 PF13018 Extended Signal Peptide of Type V secretion system C3D88_RS06135 PF13332 Hemagglutinin repeat C3D88_RS06165 PF00596 Class II Aldolase and Adducin N-terminal domain C3D88_RS06170 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS06175 PF01242 6-pyruvoyl tetrahydropterin synthase C3D88_RS06185 PF00472 RF-1 domain C3D88_RS06205 PF00701 Dihydrodipicolinate synthetase family C3D88_RS06210 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS06235 PF14537 Cytochrome c3 C3D88_RS06235 PF00890 FAD binding domain C3D88_RS06240 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS06255 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C3D88_RS06255 PF01266 FAD dependent oxidoreductase C3D88_RS06260 PF00455 DeoR C terminal sensor domain C3D88_RS06260 PF08220 DeoR-like helix-turn-helix domain C3D88_RS06265 PF17912 MalK OB fold domain C3D88_RS06265 PF00005 ABC transporter C3D88_RS06275 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS06300 PF01037 Lrp/AsnC ligand binding domain C3D88_RS06305 PF01266 FAD dependent oxidoreductase C3D88_RS06310 PF12320 Type 5 capsule protein repressor C-terminal domain C3D88_RS06310 PF00149 Calcineurin-like phosphoesterase C3D88_RS06350 PF00571 CBS domain C3D88_RS06350 PF00478 IMP dehydrogenase / GMP reductase domain C3D88_RS06355 PF00958 GMP synthase C terminal domain C3D88_RS06355 PF00117 Glutamine amidotransferase class-I C3D88_RS06355 PF02540 NAD synthase C3D88_RS06370 PF13657 HipA N-terminal domain C3D88_RS06370 PF07804 HipA-like C-terminal domain C3D88_RS06380 PF07690 Major Facilitator Superfamily C3D88_RS06395 PF01979 Amidohydrolase family C3D88_RS06405 PF00005 ABC transporter C3D88_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS06440 PF01740 STAS domain C3D88_RS06440 PF00916 Sulfate permease family C3D88_RS06445 PF10996 Beta-Casp domain C3D88_RS06445 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain C3D88_RS06445 PF00753 Metallo-beta-lactamase superfamily C3D88_RS06460 PF12706 Beta-lactamase superfamily domain C3D88_RS06465 PF01965 DJ-1/PfpI family C3D88_RS06465 PF12833 Helix-turn-helix domain C3D88_RS06470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS06470 PF03466 LysR substrate binding domain C3D88_RS06485 PF00107 Zinc-binding dehydrogenase C3D88_RS06485 PF08240 Alcohol dehydrogenase GroES-like domain C3D88_RS06490 PF07690 Major Facilitator Superfamily C3D88_RS06495 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS06495 PF00155 Aminotransferase class I and II C3D88_RS06505 PF01810 LysE type translocator C3D88_RS06515 PF01546 Peptidase family M20/M25/M40 C3D88_RS06515 PF07687 Peptidase dimerisation domain C3D88_RS06520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS06525 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS06530 PF12911 N-terminal TM domain of oligopeptide transport permease C C3D88_RS06530 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS06535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS06535 PF00005 ABC transporter C3D88_RS06540 PF00356 Bacterial regulatory proteins, lacI family C3D88_RS06570 PF09335 SNARE associated Golgi protein C3D88_RS06585 PF13847 Methyltransferase domain C3D88_RS06600 PF00155 Aminotransferase class I and II C3D88_RS06600 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS06610 PF00692 dUTPase C3D88_RS06620 PF01632 Ribosomal protein L35 C3D88_RS06625 PF00453 Ribosomal protein L20 C3D88_RS06630 PF01409 tRNA synthetases class II core domain (F) C3D88_RS06630 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C3D88_RS06635 PF03483 B3/4 domain C3D88_RS06635 PF03484 tRNA synthetase B5 domain C3D88_RS06635 PF03147 Ferredoxin-fold anticodon binding domain C3D88_RS06635 PF01588 Putative tRNA binding domain C3D88_RS06635 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C3D88_RS06640 PF00216 Bacterial DNA-binding protein C3D88_RS06685 PF04231 Endonuclease I C3D88_RS06705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3D88_RS06705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3D88_RS06710 PF04381 Putative exonuclease, RdgC C3D88_RS06720 PF02515 CoA-transferase family III C3D88_RS06725 PF03466 LysR substrate binding domain C3D88_RS06725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS06745 PF00106 short chain dehydrogenase C3D88_RS06755 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS06760 PF00005 ABC transporter C3D88_RS06760 PF08402 TOBE domain C3D88_RS06765 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS06765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3D88_RS06765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3D88_RS06770 PF00083 Sugar (and other) transporter C3D88_RS06770 PF08946 Osmosensory transporter coiled coil C3D88_RS06775 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS06775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS06780 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS06780 PF00072 Response regulator receiver domain C3D88_RS06785 PF00154 recA bacterial DNA recombination protein C3D88_RS06790 PF02631 RecX family C3D88_RS06795 PF03466 LysR substrate binding domain C3D88_RS06795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS06800 PF08267 Cobalamin-independent synthase, N-terminal domain C3D88_RS06800 PF01717 Cobalamin-independent synthase, Catalytic domain C3D88_RS06810 PF08442 ATP-grasp domain C3D88_RS06810 PF00549 CoA-ligase C3D88_RS06815 PF02629 CoA binding domain C3D88_RS06815 PF00549 CoA-ligase C3D88_RS06820 PF03741 Integral membrane protein TerC family C3D88_RS06825 PF03741 Integral membrane protein TerC family C3D88_RS06830 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C3D88_RS06830 PF03900 Porphobilinogen deaminase, C-terminal domain C3D88_RS06850 PF00719 Inorganic pyrophosphatase C3D88_RS06855 PF01557 Fumarylacetoacetate (FAA) hydrolase family C3D88_RS06890 PF13629 Pilus formation protein N terminal region C3D88_RS06890 PF00263 Bacterial type II and III secretion system protein C3D88_RS06890 PF04972 BON domain C3D88_RS06895 PF00437 Type II/IV secretion system protein C3D88_RS06910 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS06915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C3D88_RS06915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C3D88_RS06920 PF02615 Malate/L-lactate dehydrogenase C3D88_RS06925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS06925 PF03466 LysR substrate binding domain C3D88_RS06935 PF01266 FAD dependent oxidoreductase C3D88_RS06940 PF04267 Sarcosine oxidase, delta subunit family C3D88_RS06945 PF01571 Aminomethyltransferase folate-binding domain C3D88_RS06945 PF08669 Glycine cleavage T-protein C-terminal barrel domain C3D88_RS06945 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS06945 PF17806 Sarcosine oxidase A3 domain C3D88_RS06955 PF00551 Formyl transferase C3D88_RS06960 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS06970 PF00561 alpha/beta hydrolase fold C3D88_RS06980 PF01565 FAD binding domain C3D88_RS06980 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C3D88_RS06985 PF01113 Dihydrodipicolinate reductase, N-terminus C3D88_RS06985 PF05173 Dihydrodipicolinate reductase, C-terminus C3D88_RS06990 PF04355 SmpA / OmlA family C3D88_RS06995 PF01475 Ferric uptake regulator family C3D88_RS07000 PF02463 RecF/RecN/SMC N terminal domain C3D88_RS07005 PF01513 ATP-NAD kinase C3D88_RS07010 PF01628 HrcA protein C terminal domain C3D88_RS07010 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding C3D88_RS07015 PF00762 Ferrochelatase C3D88_RS07025 PF01025 GrpE C3D88_RS07035 PF00012 Hsp70 protein C3D88_RS07040 PF00684 DnaJ central domain C3D88_RS07040 PF00226 DnaJ domain C3D88_RS07040 PF01556 DnaJ C terminal domain C3D88_RS07045 PF05193 Peptidase M16 inactive domain C3D88_RS07045 PF00675 Insulinase (Peptidase family M16) C3D88_RS07065 PF01434 Peptidase family M41 C3D88_RS07065 PF17862 AAA+ lid domain C3D88_RS07065 PF00004 ATPase family associated with various cellular activities (AAA) C3D88_RS07075 PF00034 Cytochrome c C3D88_RS07090 PF00180 Isocitrate/isopropylmalate dehydrogenase C3D88_RS07110 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS07110 PF00072 Response regulator receiver domain C3D88_RS07120 PF02669 K+-transporting ATPase, c chain C3D88_RS07130 PF03814 Potassium-transporting ATPase A subunit C3D88_RS07145 PF00474 Sodium:solute symporter family C3D88_RS07160 PF00893 Small Multidrug Resistance protein C3D88_RS07165 PF00488 MutS domain V C3D88_RS07165 PF01713 Smr domain C3D88_RS07170 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS07175 PF01580 FtsK/SpoIIIE family C3D88_RS07175 PF09397 Ftsk gamma domain C3D88_RS07175 PF17854 FtsK alpha domain C3D88_RS07175 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C3D88_RS07180 PF03548 Outer membrane lipoprotein carrier protein LolA C3D88_RS07185 PF12002 MgsA AAA+ ATPase C terminal C3D88_RS07185 PF16193 AAA C-terminal domain C3D88_RS07185 PF00004 ATPase family associated with various cellular activities (AAA) C3D88_RS07190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3D88_RS07190 PF02403 Seryl-tRNA synthetase N-terminal domain C3D88_RS07215 PF17151 Periplasmic sensor domain C3D88_RS07215 PF00990 Diguanylate cyclase, GGDEF domain C3D88_RS07230 PF00593 TonB dependent receptor C3D88_RS07230 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS07230 PF07660 Secretin and TonB N terminus short domain C3D88_RS07235 PF07690 Major Facilitator Superfamily C3D88_RS07255 PF04183 IucA / IucC family C3D88_RS07255 PF06276 Ferric iron reductase FhuF-like transporter C3D88_RS07265 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) C3D88_RS07275 PF02254 TrkA-N domain C3D88_RS07275 PF00999 Sodium/hydrogen exchanger family C3D88_RS07280 PF00106 short chain dehydrogenase C3D88_RS07290 PF03883 Peroxide stress protein YaaA C3D88_RS07310 PF00990 Diguanylate cyclase, GGDEF domain C3D88_RS07330 PF00196 Bacterial regulatory proteins, luxR family C3D88_RS07335 PF02824 TGS domain C3D88_RS07335 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3D88_RS07335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3D88_RS07335 PF03129 Anticodon binding domain C3D88_RS07340 PF05198 Translation initiation factor IF-3, N-terminal domain C3D88_RS07340 PF00707 Translation initiation factor IF-3, C-terminal domain C3D88_RS07345 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C3D88_RS07345 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C3D88_RS07355 PF00381 PTS HPr component phosphorylation site C3D88_RS07360 PF05524 PEP-utilising enzyme, N-terminal C3D88_RS07360 PF02896 PEP-utilising enzyme, TIM barrel domain C3D88_RS07360 PF00391 PEP-utilising enzyme, mobile domain C3D88_RS07375 PF02423 Ornithine cyclodeaminase/mu-crystallin family C3D88_RS07385 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS07390 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS07395 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS07400 PF00005 ABC transporter C3D88_RS07415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3D88_RS07415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3D88_RS07425 PF02293 AmiS/UreI family transporter C3D88_RS07430 PF03069 Acetamidase/Formamidase family C3D88_RS07445 PF01116 Fructose-bisphosphate aldolase class-II C3D88_RS07455 PF01259 SAICAR synthetase C3D88_RS07460 PF15723 Motility quorum-sensing regulator, toxin of MqsA C3D88_RS07465 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA C3D88_RS07475 PF02600 Disulfide bond formation protein DsbB C3D88_RS07480 PF00731 AIR carboxylase C3D88_RS07485 PF02222 ATP-grasp domain C3D88_RS07485 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C3D88_RS07490 PF01300 Telomere recombination C3D88_RS07490 PF03481 Putative GTP-binding controlling metal-binding C3D88_RS07495 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS07500 PF09339 IclR helix-turn-helix domain C3D88_RS07500 PF01614 Bacterial transcriptional regulator C3D88_RS07505 PF00491 Arginase family C3D88_RS07510 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS07515 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS07520 PF00005 ABC transporter C3D88_RS07525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS07525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS07535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS07535 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS07535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS07540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS07540 PF00205 Thiamine pyrophosphate enzyme, central domain C3D88_RS07540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS07545 PF03466 LysR substrate binding domain C3D88_RS07545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS07550 PF02899 Phage integrase, N-terminal SAM-like domain C3D88_RS07550 PF00589 Phage integrase family C3D88_RS07555 PF04073 Aminoacyl-tRNA editing domain C3D88_RS07560 PF01174 SNO glutamine amidotransferase family C3D88_RS07575 PF00768 D-alanyl-D-alanine carboxypeptidase C3D88_RS07585 PF07690 Major Facilitator Superfamily C3D88_RS07595 PF13361 UvrD-like helicase C-terminal domain C3D88_RS07595 PF00580 UvrD/REP helicase N-terminal domain C3D88_RS07595 PF12705 PD-(D/E)XK nuclease superfamily C3D88_RS07605 PF12170 DNA polymerase III tau subunit V interacting with alpha C3D88_RS07605 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding C3D88_RS07605 PF12169 DNA polymerase III subunits gamma and tau domain III C3D88_RS07610 PF02575 YbaB/EbfC DNA-binding family C3D88_RS07615 PF13662 Toprim domain C3D88_RS07615 PF02132 RecR protein C3D88_RS07640 PF04228 Putative neutral zinc metallopeptidase C3D88_RS07645 PF01300 Telomere recombination C3D88_RS07685 PF03358 NADPH-dependent FMN reductase C3D88_RS07690 PF07311 Dodecin C3D88_RS07695 PF05188 MutS domain II C3D88_RS07695 PF05192 MutS domain III C3D88_RS07695 PF01624 MutS domain I C3D88_RS07695 PF00488 MutS domain V C3D88_RS07695 PF05190 MutS family domain IV C3D88_RS07700 PF08007 Cupin superfamily protein C3D88_RS07705 PF16970 Type-1 fimbrial protein, A C3D88_RS07710 PF06804 NlpB/DapX lipoprotein C3D88_RS07715 PF00701 Dihydrodipicolinate synthetase family C3D88_RS07730 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS07735 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS07740 PF00005 ABC transporter C3D88_RS07745 PF13291 ACT domain C3D88_RS07745 PF04607 Region found in RelA / SpoT proteins C3D88_RS07745 PF02824 TGS domain C3D88_RS07750 PF01192 RNA polymerase Rpb6 C3D88_RS07755 PF00625 Guanylate kinase C3D88_RS07760 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C3D88_RS07765 PF00034 Cytochrome c C3D88_RS07775 PF00877 NlpC/P60 family C3D88_RS07780 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus C3D88_RS07780 PF01048 Phosphorylase superfamily C3D88_RS07800 PF08340 Domain of unknown function (DUF1732) C3D88_RS07800 PF03755 YicC-like family, N-terminal region C3D88_RS07805 PF03725 3' exoribonuclease family, domain 2 C3D88_RS07805 PF01138 3' exoribonuclease family, domain 1 C3D88_RS07815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS07815 PF03466 LysR substrate binding domain C3D88_RS07825 PF00672 HAMP domain C3D88_RS07825 PF17154 Gammaproteobacterial periplasmic sensor domain C3D88_RS07825 PF00563 EAL domain C3D88_RS07825 PF00990 Diguanylate cyclase, GGDEF domain C3D88_RS07830 PF01725 Ham1 family C3D88_RS07840 PF04055 Radical SAM superfamily C3D88_RS07840 PF06969 HemN C-terminal domain C3D88_RS07845 PF03951 Glutamine synthetase, beta-Grasp domain C3D88_RS07845 PF00120 Glutamine synthetase, catalytic domain C3D88_RS07850 PF00989 PAS fold C3D88_RS07850 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS07855 PF02954 Bacterial regulatory protein, Fis family C3D88_RS07855 PF00072 Response regulator receiver domain C3D88_RS07855 PF00158 Sigma-54 interaction domain C3D88_RS07860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS07860 PF03466 LysR substrate binding domain C3D88_RS07865 PF02678 Pirin C3D88_RS07865 PF17954 Quercetinase C-terminal cupin domain C3D88_RS07870 PF05726 Pirin C-terminal cupin domain C3D88_RS07870 PF02678 Pirin C3D88_RS07880 PF08402 TOBE domain C3D88_RS07880 PF00005 ABC transporter C3D88_RS07885 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS07895 PF00970 Oxidoreductase FAD-binding domain C3D88_RS07895 PF00175 Oxidoreductase NAD-binding domain C3D88_RS07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS07900 PF03466 LysR substrate binding domain C3D88_RS07910 PF00248 Aldo/keto reductase family C3D88_RS07920 PF01042 Endoribonuclease L-PSP C3D88_RS07925 PF00270 DEAD/DEAH box helicase C3D88_RS07925 PF17191 RecG wedge domain C3D88_RS07925 PF00271 Helicase conserved C-terminal domain C3D88_RS07930 PF03466 LysR substrate binding domain C3D88_RS07930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS07935 PF03466 LysR substrate binding domain C3D88_RS07935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS07940 PF00171 Aldehyde dehydrogenase family C3D88_RS07945 PF00210 Ferritin-like domain C3D88_RS07965 PF00535 Glycosyl transferase family 2 C3D88_RS07975 PF00005 ABC transporter C3D88_RS07985 PF00534 Glycosyl transferases group 1 C3D88_RS07995 PF02563 Polysaccharide biosynthesis/export protein C3D88_RS08000 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C3D88_RS08000 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C3D88_RS08000 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C3D88_RS08005 PF01370 NAD dependent epimerase/dehydratase family C3D88_RS08010 PF05159 Capsule polysaccharide biosynthesis protein C3D88_RS08015 PF05159 Capsule polysaccharide biosynthesis protein C3D88_RS08025 PF00106 short chain dehydrogenase C3D88_RS08050 PF00005 ABC transporter C3D88_RS08055 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS08055 PF00005 ABC transporter C3D88_RS08070 PF03741 Integral membrane protein TerC family C3D88_RS08080 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS08095 PF17863 AAA lid domain C3D88_RS08095 PF07726 ATPase family associated with various cellular activities (AAA) C3D88_RS08130 PF00884 Sulfatase C3D88_RS08155 PF00196 Bacterial regulatory proteins, luxR family C3D88_RS08155 PF00072 Response regulator receiver domain C3D88_RS08160 PF12951 Passenger-associated-transport-repeat C3D88_RS08160 PF03797 Autotransporter beta-domain C3D88_RS08160 PF00082 Subtilase family C3D88_RS08165 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA C3D88_RS08175 PF00043 Glutathione S-transferase, C-terminal domain C3D88_RS08175 PF02798 Glutathione S-transferase, N-terminal domain C3D88_RS08180 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C3D88_RS08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS08185 PF03466 LysR substrate binding domain C3D88_RS08190 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS08200 PF01070 FMN-dependent dehydrogenase C3D88_RS08205 PF01557 Fumarylacetoacetate (FAA) hydrolase family C3D88_RS08220 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS08225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS08225 PF03466 LysR substrate binding domain C3D88_RS08230 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS08255 PF03358 NADPH-dependent FMN reductase C3D88_RS08280 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS08290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS08290 PF03466 LysR substrate binding domain C3D88_RS08310 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C3D88_RS08310 PF00361 Proton-conducting membrane transporter C3D88_RS08310 PF13244 Domain of unknown function (DUF4040) C3D88_RS08310 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter C3D88_RS08315 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C3D88_RS08320 PF00361 Proton-conducting membrane transporter C3D88_RS08325 PF01899 Na+/H+ ion antiporter subunit C3D88_RS08330 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) C3D88_RS08355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C3D88_RS08360 PF02016 LD-carboxypeptidase N-terminal domain C3D88_RS08360 PF17676 LD-carboxypeptidase C-terminal domain C3D88_RS08365 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS08370 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS08380 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS08385 PF00005 ABC transporter C3D88_RS08385 PF12848 ABC transporter C3D88_RS08390 PF00005 ABC transporter C3D88_RS08420 PF00970 Oxidoreductase FAD-binding domain C3D88_RS08420 PF00042 Globin C3D88_RS08420 PF00175 Oxidoreductase NAD-binding domain C3D88_RS08425 PF02082 Transcriptional regulator C3D88_RS08430 PF01266 FAD dependent oxidoreductase C3D88_RS08445 PF01571 Aminomethyltransferase folate-binding domain C3D88_RS08450 PF02618 YceG-like family C3D88_RS08455 PF02223 Thymidylate kinase C3D88_RS08460 PF12169 DNA polymerase III subunits gamma and tau domain III C3D88_RS08465 PF01026 TatD related DNase C3D88_RS08480 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS08490 PF00005 ABC transporter C3D88_RS08500 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C3D88_RS08500 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C3D88_RS08510 PF07687 Peptidase dimerisation domain C3D88_RS08510 PF01546 Peptidase family M20/M25/M40 C3D88_RS08515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS08515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS08515 PF00205 Thiamine pyrophosphate enzyme, central domain C3D88_RS08525 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C3D88_RS08525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS08535 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS08535 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C3D88_RS08540 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS08540 PF07729 FCD domain C3D88_RS08585 PF01425 Amidase C3D88_RS08590 PF07286 Protein of unknown function (DUF1445) C3D88_RS08600 PF00072 Response regulator receiver domain C3D88_RS08600 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS08600 PF00989 PAS fold C3D88_RS08600 PF01627 Hpt domain C3D88_RS08600 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS08600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS08605 PF00196 Bacterial regulatory proteins, luxR family C3D88_RS08605 PF00072 Response regulator receiver domain C3D88_RS08620 PF16970 Type-1 fimbrial protein, A C3D88_RS08625 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain C3D88_RS08625 PF02753 Pili assembly chaperone PapD, C-terminal domain C3D88_RS08630 PF00577 Outer membrane usher protein C3D88_RS08630 PF13954 PapC N-terminal domain C3D88_RS08630 PF13953 PapC C-terminal domain C3D88_RS08635 PF00419 Fimbrial protein C3D88_RS08640 PF17287 POTRA domain C3D88_RS08640 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB C3D88_RS08640 PF08479 POTRA domain, ShlB-type C3D88_RS08655 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS08690 PF01968 Hydantoinase/oxoprolinase C3D88_RS08690 PF05378 Hydantoinase/oxoprolinase N-terminal region C3D88_RS08705 PF05552 Conserved TM helix C3D88_RS08705 PF00924 Mechanosensitive ion channel C3D88_RS08715 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS08720 PF00588 SpoU rRNA Methylase family C3D88_RS08725 PF00459 Inositol monophosphatase family C3D88_RS08730 PF03471 Transporter associated domain C3D88_RS08730 PF03741 Integral membrane protein TerC family C3D88_RS08735 PF02673 Bacitracin resistance protein BacA C3D88_RS08740 PF00149 Calcineurin-like phosphoesterase C3D88_RS08745 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C3D88_RS08755 PF09190 DALR domain C3D88_RS08755 PF01406 tRNA synthetases class I (C) catalytic domain C3D88_RS08760 PF02805 Metal binding domain of Ada C3D88_RS08760 PF00730 HhH-GPD superfamily base excision DNA repair protein C3D88_RS08760 PF12833 Helix-turn-helix domain C3D88_RS08760 PF06029 AlkA N-terminal domain C3D88_RS08765 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C3D88_RS08775 PF09179 TilS substrate binding domain C3D88_RS08775 PF01171 PP-loop family C3D88_RS08780 PF13840 ACT domain C3D88_RS08780 PF01842 ACT domain C3D88_RS08780 PF00696 Amino acid kinase family C3D88_RS08805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3D88_RS08805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3D88_RS08810 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C3D88_RS08810 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS08815 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS08820 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS08825 PF00561 alpha/beta hydrolase fold C3D88_RS08830 PF03447 Homoserine dehydrogenase, NAD binding domain C3D88_RS08830 PF01958 Domain of unknown function DUF108 C3D88_RS08845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS08845 PF03466 LysR substrate binding domain C3D88_RS08860 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS08865 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS08870 PF00005 ABC transporter C3D88_RS08870 PF08402 TOBE domain C3D88_RS08880 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS08880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3D88_RS08885 PF09339 IclR helix-turn-helix domain C3D88_RS08885 PF01614 Bacterial transcriptional regulator C3D88_RS08890 PF13380 CoA binding domain C3D88_RS08895 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS08900 PF01042 Endoribonuclease L-PSP C3D88_RS08925 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3D88_RS08935 PF00535 Glycosyl transferase family 2 C3D88_RS08940 PF01522 Polysaccharide deacetylase C3D88_RS08940 PF14883 Hypothetical glycosyl hydrolase family 13 C3D88_RS08960 PF12802 MarR family C3D88_RS08965 PF00196 Bacterial regulatory proteins, luxR family C3D88_RS08965 PF00072 Response regulator receiver domain C3D88_RS08975 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3D88_RS08975 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3D88_RS08975 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3D88_RS08975 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3D88_RS08980 PF00342 Phosphoglucose isomerase C3D88_RS08985 PF00132 Bacterial transferase hexapeptide (six repeats) C3D88_RS08995 PF02146 Sir2 family C3D88_RS09000 PF00459 Inositol monophosphatase family C3D88_RS09005 PF00171 Aldehyde dehydrogenase family C3D88_RS09010 PF00202 Aminotransferase class-III C3D88_RS09025 PF13361 UvrD-like helicase C-terminal domain C3D88_RS09025 PF00580 UvrD/REP helicase N-terminal domain C3D88_RS09030 PF01544 CorA-like Mg2+ transporter protein C3D88_RS09040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS09045 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS09050 PF12911 N-terminal TM domain of oligopeptide transport permease C C3D88_RS09050 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS09055 PF00005 ABC transporter C3D88_RS09055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS09060 PF01047 MarR family C3D88_RS09080 PF08479 POTRA domain, ShlB-type C3D88_RS09080 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB C3D88_RS09085 PF00990 Diguanylate cyclase, GGDEF domain C3D88_RS09085 PF00563 EAL domain C3D88_RS09085 PF03707 Bacterial signalling protein N terminal repeat C3D88_RS09115 PF04972 BON domain C3D88_RS09115 PF00263 Bacterial type II and III secretion system protein C3D88_RS09115 PF13629 Pilus formation protein N terminal region C3D88_RS09155 PF02954 Bacterial regulatory protein, Fis family C3D88_RS09155 PF00072 Response regulator receiver domain C3D88_RS09155 PF00158 Sigma-54 interaction domain C3D88_RS09170 PF08281 Sigma-70, region 4 C3D88_RS09170 PF04542 Sigma-70 region 2 C3D88_RS09180 PF00034 Cytochrome c C3D88_RS09185 PF08207 Elongation factor P (EF-P) KOW-like domain C3D88_RS09185 PF09285 Elongation factor P, C-terminal C3D88_RS09185 PF01132 Elongation factor P (EF-P) OB domain C3D88_RS09200 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C3D88_RS09205 PF00330 Aconitase family (aconitate hydratase) C3D88_RS09205 PF00694 Aconitase C-terminal domain C3D88_RS09215 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS09215 PF00593 TonB dependent receptor C3D88_RS09235 PF00691 OmpA family C3D88_RS09245 PF11791 Aconitate B N-terminal domain C3D88_RS09245 PF06434 Aconitate hydratase 2 N-terminus C3D88_RS09245 PF00330 Aconitase family (aconitate hydratase) C3D88_RS09270 PF00892 EamA-like transporter family C3D88_RS09275 PF01925 Sulfite exporter TauE/SafE C3D88_RS09295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS09295 PF03466 LysR substrate binding domain C3D88_RS09300 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain C3D88_RS09300 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain C3D88_RS09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS09310 PF03466 LysR substrate binding domain C3D88_RS09355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3D88_RS09355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3D88_RS09360 PF01425 Amidase C3D88_RS09370 PF00171 Aldehyde dehydrogenase family C3D88_RS09385 PF09334 tRNA synthetases class I (M) C3D88_RS09385 PF08264 Anticodon-binding domain of tRNA C3D88_RS09385 PF13603 Leucyl-tRNA synthetase, Domain 2 C3D88_RS09385 PF00133 tRNA synthetases class I (I, L, M and V) C3D88_RS09390 PF07690 Major Facilitator Superfamily C3D88_RS09395 PF01047 MarR family C3D88_RS09420 PF00916 Sulfate permease family C3D88_RS09420 PF01740 STAS domain C3D88_RS09425 PF00471 Ribosomal protein L33 C3D88_RS09430 PF00830 Ribosomal L28 family C3D88_RS09435 PF07690 Major Facilitator Superfamily C3D88_RS09455 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS09460 PF00571 CBS domain C3D88_RS09460 PF00005 ABC transporter C3D88_RS09465 PF01361 Tautomerase enzyme C3D88_RS09470 PF00108 Thiolase, N-terminal domain C3D88_RS09470 PF02803 Thiolase, C-terminal domain C3D88_RS09480 PF07729 FCD domain C3D88_RS09480 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS09490 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS09500 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS09505 PF00080 Copper/zinc superoxide dismutase (SODC) C3D88_RS09520 PF00005 ABC transporter C3D88_RS09525 PF03459 TOBE domain C3D88_RS09525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS09545 PF00529 HlyD membrane-fusion protein of T1SS C3D88_RS09545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3D88_RS09550 PF00873 AcrB/AcrD/AcrF family C3D88_RS09560 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C3D88_RS09565 PF01648 4'-phosphopantetheinyl transferase superfamily C3D88_RS09570 PF00933 Glycosyl hydrolase family 3 N terminal domain C3D88_RS09575 PF02151 UvrB/uvrC motif C3D88_RS09575 PF01541 GIY-YIG catalytic domain C3D88_RS09575 PF08459 UvrC Helix-hairpin-helix N-terminal C3D88_RS09580 PF01066 CDP-alcohol phosphatidyltransferase C3D88_RS09590 PF14489 QueF-like protein C3D88_RS09590 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term C3D88_RS09595 PF00463 Isocitrate lyase family C3D88_RS09620 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS09625 PF13458 Periplasmic binding protein C3D88_RS09630 PF00355 Rieske [2Fe-2S] domain C3D88_RS09630 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C3D88_RS09635 PF00866 Ring hydroxylating beta subunit C3D88_RS09640 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS09650 PF00111 2Fe-2S iron-sulfur cluster binding domain C3D88_RS09655 PF02515 CoA-transferase family III C3D88_RS09660 PF07859 alpha/beta hydrolase fold C3D88_RS09665 PF00501 AMP-binding enzyme C3D88_RS09665 PF14535 AMP-binding enzyme C-terminal domain C3D88_RS09670 PF00108 Thiolase, N-terminal domain C3D88_RS09670 PF02803 Thiolase, C-terminal domain C3D88_RS09685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS09685 PF03466 LysR substrate binding domain C3D88_RS09690 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS09715 PF01152 Bacterial-like globin C3D88_RS09760 PF01522 Polysaccharide deacetylase C3D88_RS09765 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS09790 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS09790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3D88_RS09815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS09815 PF03466 LysR substrate binding domain C3D88_RS09825 PF01799 [2Fe-2S] binding domain C3D88_RS09825 PF00111 2Fe-2S iron-sulfur cluster binding domain C3D88_RS09830 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C3D88_RS09840 PF06719 AraC-type transcriptional regulator N-terminus C3D88_RS09840 PF12833 Helix-turn-helix domain C3D88_RS09860 PF07690 Major Facilitator Superfamily C3D88_RS09885 PF00005 ABC transporter C3D88_RS09885 PF00664 ABC transporter transmembrane region C3D88_RS09895 PF02535 ZIP Zinc transporter C3D88_RS09910 PF00916 Sulfate permease family C3D88_RS09910 PF01740 STAS domain C3D88_RS09930 PF03625 Domain of unknown function DUF302 C3D88_RS09930 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C3D88_RS09940 PF12833 Helix-turn-helix domain C3D88_RS09940 PF02805 Metal binding domain of Ada C3D88_RS09945 PF07237 Protein of unknown function (DUF1428) C3D88_RS09950 PF02567 Phenazine biosynthesis-like protein C3D88_RS09955 PF03466 LysR substrate binding domain C3D88_RS09955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS09960 PF04286 Protein of unknown function (DUF445) C3D88_RS09975 PF00171 Aldehyde dehydrogenase family C3D88_RS09980 PF00158 Sigma-54 interaction domain C3D88_RS09980 PF02954 Bacterial regulatory protein, Fis family C3D88_RS09980 PF01590 GAF domain C3D88_RS10010 PF03788 LrgA family C3D88_RS10015 PF13649 Methyltransferase domain C3D88_RS10025 PF00155 Aminotransferase class I and II C3D88_RS10030 PF00202 Aminotransferase class-III C3D88_RS10065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C3D88_RS10065 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP C3D88_RS10070 PF12801 4Fe-4S binding domain C3D88_RS10070 PF13746 4Fe-4S dicluster domain C3D88_RS10070 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase C3D88_RS10095 PF00005 ABC transporter C3D88_RS10100 PF01061 ABC-2 type transporter C3D88_RS10105 PF01594 AI-2E family transporter C3D88_RS10135 PF04539 Sigma-70 region 3 C3D88_RS10135 PF04545 Sigma-70, region 4 C3D88_RS10135 PF03979 Sigma-70 factor, region 1.1 C3D88_RS10135 PF00140 Sigma-70 factor, region 1.2 C3D88_RS10135 PF04542 Sigma-70 region 2 C3D88_RS10135 PF04546 Sigma-70, non-essential region C3D88_RS10140 PF08278 DNA primase DnaG DnaB-binding C3D88_RS10140 PF08275 DNA primase catalytic core, N-terminal domain C3D88_RS10140 PF10410 DnaB-helicase binding domain of primase C3D88_RS10140 PF01807 CHC2 zinc finger C3D88_RS10145 PF01165 Ribosomal protein S21 C3D88_RS10150 PF00156 Phosphoribosyl transferase domain C3D88_RS10155 PF00709 Adenylosuccinate synthetase C3D88_RS10160 PF13393 Histidyl-tRNA synthetase C3D88_RS10165 PF01145 SPFH domain / Band 7 family C3D88_RS10170 PF12221 Bacterial membrane protein N terminal C3D88_RS10170 PF01145 SPFH domain / Band 7 family C3D88_RS10175 PF01926 50S ribosome-binding GTPase C3D88_RS10175 PF16360 GTP-binding GTPase Middle Region C3D88_RS10175 PF13167 GTP-binding GTPase N-terminal C3D88_RS10180 PF17209 Hfq protein C3D88_RS10185 PF00155 Aminotransferase class I and II C3D88_RS10190 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C3D88_RS10190 PF01926 50S ribosome-binding GTPase C3D88_RS10195 PF13360 PQQ-like domain C3D88_RS10200 PF09976 Tetratricopeptide repeat-like domain C3D88_RS10205 PF13393 Histidyl-tRNA synthetase C3D88_RS10205 PF03129 Anticodon binding domain C3D88_RS10210 PF04551 GcpE protein C3D88_RS10220 PF04055 Radical SAM superfamily C3D88_RS10225 PF00334 Nucleoside diphosphate kinase C3D88_RS10230 PF08264 Anticodon-binding domain of tRNA C3D88_RS10230 PF00133 tRNA synthetases class I (I, L, M and V) C3D88_RS10230 PF10458 Valyl tRNA synthetase tRNA binding arm C3D88_RS10245 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS10245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS10245 PF08521 Two-component sensor kinase N-terminal C3D88_RS10270 PF00266 Aminotransferase class-V C3D88_RS10275 PF01746 tRNA (Guanine-1)-methyltransferase C3D88_RS10280 PF01782 RimM N-terminal domain C3D88_RS10285 PF00886 Ribosomal protein S16 C3D88_RS10295 PF01206 Sulfurtransferase TusA C3D88_RS10300 PF02272 DHHA1 domain C3D88_RS10300 PF01411 tRNA synthetases class II (A) C3D88_RS10300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3D88_RS10345 PF01425 Amidase C3D88_RS10350 PF00005 ABC transporter C3D88_RS10350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS10355 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS10360 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS10365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS10385 PF03466 LysR substrate binding domain C3D88_RS10385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS10390 PF13416 Bacterial extracellular solute-binding protein C3D88_RS10395 PF01266 FAD dependent oxidoreductase C3D88_RS10400 PF00175 Oxidoreductase NAD-binding domain C3D88_RS10400 PF00111 2Fe-2S iron-sulfur cluster binding domain C3D88_RS10400 PF00970 Oxidoreductase FAD-binding domain C3D88_RS10405 PF02261 Aspartate decarboxylase C3D88_RS10425 PF17042 Nucleotide-binding C-terminal domain C3D88_RS10425 PF07005 Sugar-binding N-terminal domain C3D88_RS10440 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS10450 PF02142 MGS-like domain C3D88_RS10455 PF04384 Iron-sulphur cluster assembly C3D88_RS10460 PF00111 2Fe-2S iron-sulfur cluster binding domain C3D88_RS10465 PF00012 Hsp70 protein C3D88_RS10470 PF07743 HSCB C-terminal oligomerisation domain C3D88_RS10475 PF01521 Iron-sulphur cluster biosynthesis C3D88_RS10480 PF01592 NifU-like N terminal domain C3D88_RS10485 PF00266 Aminotransferase class-V C3D88_RS10490 PF02082 Transcriptional regulator C3D88_RS10495 PF01451 Low molecular weight phosphotyrosine protein phosphatase C3D88_RS10500 PF02151 UvrB/uvrC motif C3D88_RS10500 PF12344 Ultra-violet resistance protein B C3D88_RS10500 PF04851 Type III restriction enzyme, res subunit C3D88_RS10500 PF17757 UvrB interaction domain C3D88_RS10500 PF00271 Helicase conserved C-terminal domain C3D88_RS10505 PF00155 Aminotransferase class I and II C3D88_RS10510 PF00717 Peptidase S24-like C3D88_RS10510 PF01726 LexA DNA binding domain C3D88_RS10535 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS10540 PF01144 Coenzyme A transferase C3D88_RS10545 PF01144 Coenzyme A transferase C3D88_RS10565 PF02803 Thiolase, C-terminal domain C3D88_RS10565 PF00108 Thiolase, N-terminal domain C3D88_RS10575 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS10580 PF01575 MaoC like domain C3D88_RS10585 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS10590 PF02515 CoA-transferase family III C3D88_RS10595 PF03466 LysR substrate binding domain C3D88_RS10595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS10600 PF00004 ATPase family associated with various cellular activities (AAA) C3D88_RS10600 PF02190 ATP-dependent protease La (LON) substrate-binding domain C3D88_RS10600 PF05362 Lon protease (S16) C-terminal proteolytic domain C3D88_RS10605 PF07724 AAA domain (Cdc48 subfamily) C3D88_RS10605 PF10431 C-terminal, D2-small domain, of ClpB protein C3D88_RS10605 PF06689 ClpX C4-type zinc finger C3D88_RS10610 PF00574 Clp protease C3D88_RS10615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3D88_RS10615 PF05698 Bacterial trigger factor protein (TF) C-terminus C3D88_RS10615 PF05697 Bacterial trigger factor protein (TF) C3D88_RS10620 PF03350 Uncharacterized protein family, UPF0114 C3D88_RS10625 PF00313 'Cold-shock' DNA-binding domain C3D88_RS10635 PF00313 'Cold-shock' DNA-binding domain C3D88_RS10670 PF14602 Hexapeptide repeat of succinyl-transferase C3D88_RS10670 PF00132 Bacterial transferase hexapeptide (six repeats) C3D88_RS10670 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C3D88_RS10675 PF01546 Peptidase family M20/M25/M40 C3D88_RS10675 PF07687 Peptidase dimerisation domain C3D88_RS10680 PF05175 Methyltransferase small domain C3D88_RS10685 PF12848 ABC transporter C3D88_RS10685 PF00005 ABC transporter C3D88_RS10690 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS10695 PF13361 UvrD-like helicase C-terminal domain C3D88_RS10695 PF00580 UvrD/REP helicase N-terminal domain C3D88_RS10715 PF00551 Formyl transferase C3D88_RS10720 PF01687 Riboflavin kinase C3D88_RS10720 PF06574 FAD synthetase C3D88_RS10725 PF00133 tRNA synthetases class I (I, L, M and V) C3D88_RS10725 PF08264 Anticodon-binding domain of tRNA C3D88_RS10725 PF06827 Zinc finger found in FPG and IleRS C3D88_RS10730 PF01252 Signal peptidase (SPase) II C3D88_RS10735 PF04127 DNA / pantothenate metabolism flavoprotein C3D88_RS10735 PF02441 Flavoprotein C3D88_RS10745 PF01037 Lrp/AsnC ligand binding domain C3D88_RS10765 PF13406 Transglycosylase SLT domain C3D88_RS10770 PF04305 Protein of unknown function (DUF455) C3D88_RS10790 PF02875 Mur ligase family, glutamate ligase domain C3D88_RS10790 PF08245 Mur ligase middle domain C3D88_RS10790 PF08443 RimK-like ATP-grasp domain C3D88_RS10795 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3D88_RS10795 PF02875 Mur ligase family, glutamate ligase domain C3D88_RS10795 PF08245 Mur ligase middle domain C3D88_RS10800 PF05532 CsbD-like C3D88_RS10810 PF04972 BON domain C3D88_RS10835 PF00005 ABC transporter C3D88_RS10840 PF13472 GDSL-like Lipase/Acylhydrolase family C3D88_RS10845 PF13145 PPIC-type PPIASE domain C3D88_RS10850 PF03009 Glycerophosphoryl diester phosphodiesterase family C3D88_RS10855 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C3D88_RS10860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3D88_RS10860 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS10865 PF08534 Redoxin C3D88_RS10865 PF00462 Glutaredoxin C3D88_RS10875 PF09278 MerR, DNA binding C3D88_RS10875 PF00376 MerR family regulatory protein C3D88_RS10880 PF05958 tRNA (Uracil-5-)-methyltransferase C3D88_RS10900 PF01476 LysM domain C3D88_RS10900 PF01551 Peptidase family M23 C3D88_RS10910 PF01975 Survival protein SurE C3D88_RS10915 PF02660 Glycerol-3-phosphate acyltransferase C3D88_RS10925 PF00814 Glycoprotease family C3D88_RS10930 PF00860 Permease family C3D88_RS10940 PF00085 Thioredoxin C3D88_RS10945 PF01205 Uncharacterized protein family UPF0029 C3D88_RS10955 PF00583 Acetyltransferase (GNAT) family C3D88_RS10960 PF12802 MarR family C3D88_RS10970 PF00202 Aminotransferase class-III C3D88_RS10975 PF16868 NMT1-like family C3D88_RS10995 PF03797 Autotransporter beta-domain C3D88_RS11010 PF13091 PLD-like domain C3D88_RS11010 PF13396 Phospholipase_D-nuclease N-terminal C3D88_RS11015 PF01740 STAS domain C3D88_RS11020 PF13581 Histidine kinase-like ATPase domain C3D88_RS11025 PF00842 Alanine racemase, C-terminal domain C3D88_RS11025 PF01168 Alanine racemase, N-terminal domain C3D88_RS11035 PF00672 HAMP domain C3D88_RS11035 PF07228 Stage II sporulation protein E (SpoIIE) C3D88_RS11060 PF08281 Sigma-70, region 4 C3D88_RS11060 PF04542 Sigma-70 region 2 C3D88_RS11065 PF03958 Bacterial type II/III secretion system short domain C3D88_RS11065 PF00263 Bacterial type II and III secretion system protein C3D88_RS11075 PF01312 FlhB HrpN YscU SpaS Family C3D88_RS11080 PF01311 Bacterial export proteins, family 1 C3D88_RS11085 PF01313 Bacterial export proteins, family 3 C3D88_RS11090 PF00813 FliP family C3D88_RS11095 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C3D88_RS11110 PF18269 T3SS EscN ATPase C-terminal domain C3D88_RS11110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3D88_RS11110 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3D88_RS11115 PF02108 Flagellar assembly protein FliH C3D88_RS11125 PF01514 Secretory protein of YscJ/FliF family C3D88_RS11190 PF00771 FHIPEP family C3D88_RS11230 PF01272 Transcription elongation factor, GreA/GreB, C-term C3D88_RS11230 PF03449 Transcription elongation factor, N-terminal C3D88_RS11235 PF02203 Tar ligand binding domain homologue C3D88_RS11235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3D88_RS11235 PF00672 HAMP domain C3D88_RS11240 PF00860 Permease family C3D88_RS11270 PF13419 Haloacid dehalogenase-like hydrolase C3D88_RS11275 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS11280 PF00005 ABC transporter C3D88_RS11280 PF08402 TOBE domain C3D88_RS11285 PF03466 LysR substrate binding domain C3D88_RS11285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS11295 PF00581 Rhodanese-like domain C3D88_RS11305 PF01435 Peptidase family M48 C3D88_RS11310 PF08240 Alcohol dehydrogenase GroES-like domain C3D88_RS11310 PF00107 Zinc-binding dehydrogenase C3D88_RS11315 PF00892 EamA-like transporter family C3D88_RS11325 PF01047 MarR family C3D88_RS11335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3D88_RS11335 PF00529 HlyD membrane-fusion protein of T1SS C3D88_RS11340 PF07690 Major Facilitator Superfamily C3D88_RS11345 PF00180 Isocitrate/isopropylmalate dehydrogenase C3D88_RS11350 PF00155 Aminotransferase class I and II C3D88_RS11350 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS11355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS11360 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS11365 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS11365 PF12911 N-terminal TM domain of oligopeptide transport permease C C3D88_RS11370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS11370 PF00005 ABC transporter C3D88_RS11380 PF00202 Aminotransferase class-III C3D88_RS11385 PF07883 Cupin domain C3D88_RS11390 PF00850 Histone deacetylase domain C3D88_RS11395 PF07687 Peptidase dimerisation domain C3D88_RS11395 PF01546 Peptidase family M20/M25/M40 C3D88_RS11405 PF00171 Aldehyde dehydrogenase family C3D88_RS11410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3D88_RS11415 PF00202 Aminotransferase class-III C3D88_RS11420 PF01235 Sodium:alanine symporter family C3D88_RS11425 PF05872 Bacterial protein of unknown function (DUF853) C3D88_RS11430 PF01709 Transcriptional regulator C3D88_RS11435 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C3D88_RS11435 PF02843 Phosphoribosylglycinamide synthetase, C domain C3D88_RS11435 PF02844 Phosphoribosylglycinamide synthetase, N domain C3D88_RS11440 PF01218 Coproporphyrinogen III oxidase C3D88_RS11445 PF01467 Cytidylyltransferase-like C3D88_RS11455 PF02590 Predicted SPOUT methyltransferase C3D88_RS11460 PF02545 Maf-like protein C3D88_RS11465 PF03212 Pertactin C3D88_RS11465 PF03797 Autotransporter beta-domain C3D88_RS11505 PF00575 S1 RNA binding domain C3D88_RS11505 PF10150 Ribonuclease E/G family C3D88_RS11510 PF00800 Prephenate dehydratase C3D88_RS11510 PF01842 ACT domain C3D88_RS11520 PF07690 Major Facilitator Superfamily C3D88_RS11525 PF00005 ABC transporter C3D88_RS11525 PF00664 ABC transporter transmembrane region C3D88_RS11530 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C3D88_RS11540 PF03692 Putative zinc- or iron-chelating domain C3D88_RS11555 PF00884 Sulfatase C3D88_RS11560 PF00534 Glycosyl transferases group 1 C3D88_RS11560 PF13439 Glycosyltransferase Family 4 C3D88_RS11565 PF00535 Glycosyl transferase family 2 C3D88_RS11570 PF01522 Polysaccharide deacetylase C3D88_RS11575 PF00534 Glycosyl transferases group 1 C3D88_RS11575 PF13439 Glycosyltransferase Family 4 C3D88_RS11580 PF02811 PHP domain C3D88_RS11580 PF07733 Bacterial DNA polymerase III alpha NTPase domain C3D88_RS11580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C3D88_RS11580 PF14579 Helix-hairpin-helix motif C3D88_RS11580 PF01336 OB-fold nucleic acid binding domain C3D88_RS11590 PF00271 Helicase conserved C-terminal domain C3D88_RS11590 PF04408 Helicase associated domain (HA2) C3D88_RS11590 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold C3D88_RS11590 PF11898 Domain of unknown function (DUF3418) C3D88_RS11590 PF00270 DEAD/DEAH box helicase C3D88_RS11595 PF00696 Amino acid kinase family C3D88_RS11595 PF00583 Acetyltransferase (GNAT) family C3D88_RS11600 PF04362 Bacterial Fe(2+) trafficking C3D88_RS11605 PF05506 Domain of unknown function (DUF756) C3D88_RS11605 PF04185 Phosphoesterase family C3D88_RS11610 PF01895 PhoU domain C3D88_RS11615 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C3D88_RS11620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS11620 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS11620 PF18158 Adaptive response protein AidB N-terminal domain C3D88_RS11625 PF02646 RmuC family C3D88_RS11635 PF02245 Methylpurine-DNA glycosylase (MPG) C3D88_RS11645 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS11650 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS11655 PF00005 ABC transporter C3D88_RS11655 PF08402 TOBE domain C3D88_RS11660 PF13416 Bacterial extracellular solute-binding protein C3D88_RS11680 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS11690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS11690 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C3D88_RS11705 PF00285 Citrate synthase, C-terminal domain C3D88_RS11710 PF03937 Flavinator of succinate dehydrogenase C3D88_RS11715 PF13085 2Fe-2S iron-sulfur cluster binding domain C3D88_RS11720 PF02910 Fumarate reductase flavoprotein C-term C3D88_RS11720 PF00890 FAD binding domain C3D88_RS11725 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3D88_RS11730 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3D88_RS11735 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS11735 PF07702 UTRA domain C3D88_RS11740 PF00056 lactate/malate dehydrogenase, NAD binding domain C3D88_RS11740 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C3D88_RS11750 PF00285 Citrate synthase, C-terminal domain C3D88_RS11770 PF04303 PrpF protein C3D88_RS11775 PF03972 MmgE/PrpD family C3D88_RS11780 PF03653 Uncharacterised protein family (UPF0093) C3D88_RS11785 PF02926 THUMP domain C3D88_RS11785 PF01170 Putative RNA methylase family UPF0020 C3D88_RS11805 PF16177 Acetyl-coenzyme A synthetase N-terminus C3D88_RS11805 PF00501 AMP-binding enzyme C3D88_RS11805 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS11815 PF01430 Hsp33 protein C3D88_RS11840 PF00211 Adenylate and Guanylate cyclase catalytic domain C3D88_RS11845 PF04977 Septum formation initiator C3D88_RS11850 PF00113 Enolase, C-terminal TIM barrel domain C3D88_RS11850 PF03952 Enolase, N-terminal domain C3D88_RS11860 PF00793 DAHP synthetase I family C3D88_RS11865 PF00117 Glutamine amidotransferase class-I C3D88_RS11865 PF06418 CTP synthase N-terminus C3D88_RS11875 PF00557 Metallopeptidase family M24 C3D88_RS11875 PF01321 Creatinase/Prolidase N-terminal domain C3D88_RS11885 PF03576 Peptidase family S58 C3D88_RS11890 PF12911 N-terminal TM domain of oligopeptide transport permease C C3D88_RS11890 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS11895 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS11900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS11905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS11905 PF00005 ABC transporter C3D88_RS11910 PF01112 Asparaginase C3D88_RS11920 PF01144 Coenzyme A transferase C3D88_RS11940 PF16363 GDP-mannose 4,6 dehydratase C3D88_RS11955 PF01212 Beta-eliminating lyase C3D88_RS11960 PF00892 EamA-like transporter family C3D88_RS11965 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS11965 PF00501 AMP-binding enzyme C3D88_RS11965 PF16177 Acetyl-coenzyme A synthetase N-terminus C3D88_RS11975 PF03928 Haem-degrading C3D88_RS11985 PF00877 NlpC/P60 family C3D88_RS12000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS12000 PF03466 LysR substrate binding domain C3D88_RS12005 PF00171 Aldehyde dehydrogenase family C3D88_RS12015 PF03466 LysR substrate binding domain C3D88_RS12015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS12025 PF00883 Cytosol aminopeptidase family, catalytic domain C3D88_RS12025 PF02789 Cytosol aminopeptidase family, N-terminal domain C3D88_RS12030 PF04364 DNA polymerase III chi subunit, HolC C3D88_RS12040 PF01027 Inhibitor of apoptosis-promoting Bax1 C3D88_RS12045 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS12060 PF00291 Pyridoxal-phosphate dependent enzyme C3D88_RS12070 PF11967 Recombination protein O N terminal C3D88_RS12070 PF02565 Recombination protein O C terminal C3D88_RS12075 PF01926 50S ribosome-binding GTPase C3D88_RS12075 PF07650 KH domain C3D88_RS12080 PF14622 Ribonuclease-III-like C3D88_RS12080 PF00035 Double-stranded RNA binding motif C3D88_RS12085 PF10502 Signal peptidase, peptidase S26 C3D88_RS12090 PF00009 Elongation factor Tu GTP binding domain C3D88_RS12090 PF00679 Elongation factor G C-terminus C3D88_RS12090 PF03144 Elongation factor Tu domain 2 C3D88_RS12090 PF06421 GTP-binding protein LepA C-terminus C3D88_RS12095 PF13180 PDZ domain C3D88_RS12110 PF08281 Sigma-70, region 4 C3D88_RS12110 PF04542 Sigma-70 region 2 C3D88_RS12120 PF02801 Beta-ketoacyl synthase, C-terminal domain C3D88_RS12120 PF00109 Beta-ketoacyl synthase, N-terminal domain C3D88_RS12125 PF00550 Phosphopantetheine attachment site C3D88_RS12135 PF00698 Acyl transferase domain C3D88_RS12140 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C3D88_RS12140 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C3D88_RS12145 PF02504 Fatty acid synthesis protein C3D88_RS12150 PF01783 Ribosomal L32p protein family C3D88_RS12155 PF02620 Large ribosomal RNA subunit accumulation protein YceD C3D88_RS12160 PF02545 Maf-like protein C3D88_RS12170 PF01510 N-acetylmuramoyl-L-alanine amidase C3D88_RS12185 PF03883 Peroxide stress protein YaaA C3D88_RS12200 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C3D88_RS12205 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS12215 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS12220 PF01416 tRNA pseudouridine synthase C3D88_RS12230 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3D88_RS12230 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3D88_RS12235 PF00180 Isocitrate/isopropylmalate dehydrogenase C3D88_RS12240 PF00694 Aconitase C-terminal domain C3D88_RS12245 PF00330 Aconitase family (aconitate hydratase) C3D88_RS12250 PF12849 PBP superfamily domain C3D88_RS12255 PF00005 ABC transporter C3D88_RS12290 PF01568 Molydopterin dinucleotide binding domain C3D88_RS12290 PF00384 Molybdopterin oxidoreductase C3D88_RS12290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C3D88_RS12320 PF10609 NUBPL iron-transfer P-loop NTPase C3D88_RS12325 PF12804 MobA-like NTP transferase domain C3D88_RS12330 PF03454 MoeA C-terminal region (domain IV) C3D88_RS12330 PF00994 Probable molybdopterin binding domain C3D88_RS12330 PF03453 MoeA N-terminal region (domain I and II) C3D88_RS12335 PF03205 Molybdopterin guanine dinucleotide synthesis protein B C3D88_RS12340 PF01435 Peptidase family M48 C3D88_RS12345 PF01264 Chorismate synthase C3D88_RS12350 PF00990 Diguanylate cyclase, GGDEF domain C3D88_RS12350 PF00563 EAL domain C3D88_RS12350 PF08448 PAS fold C3D88_RS12350 PF08447 PAS fold C3D88_RS12365 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS12370 PF08402 TOBE domain C3D88_RS12370 PF00005 ABC transporter C3D88_RS12375 PF03466 LysR substrate binding domain C3D88_RS12375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS12380 PF00300 Histidine phosphatase superfamily (branch 1) C3D88_RS12390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3D88_RS12390 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C3D88_RS12390 PF02142 MGS-like domain C3D88_RS12395 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C3D88_RS12395 PF00117 Glutamine amidotransferase class-I C3D88_RS12400 PF00923 Transaldolase/Fructose-6-phosphate aldolase C3D88_RS12435 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3D88_RS12435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3D88_RS12440 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS12445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS12445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS12445 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS12450 PF03658 RnfH family Ubiquitin C3D88_RS12455 PF03364 Polyketide cyclase / dehydrase and lipid transport C3D88_RS12465 PF01668 SmpB protein C3D88_RS12470 PF08448 PAS fold C3D88_RS12470 PF00990 Diguanylate cyclase, GGDEF domain C3D88_RS12475 PF01145 SPFH domain / Band 7 family C3D88_RS12475 PF16200 C-terminal region of band_7 C3D88_RS12490 PF00958 GMP synthase C terminal domain C3D88_RS12490 PF00117 Glutamine amidotransferase class-I C3D88_RS12495 PF02896 PEP-utilising enzyme, TIM barrel domain C3D88_RS12495 PF00391 PEP-utilising enzyme, mobile domain C3D88_RS12495 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C3D88_RS12500 PF03618 Kinase/pyrophosphorylase C3D88_RS12505 PF00588 SpoU rRNA Methylase family C3D88_RS12505 PF08032 RNA 2'-O ribose methyltransferase substrate binding C3D88_RS12510 PF01351 Ribonuclease HII C3D88_RS12515 PF02684 Lipid-A-disaccharide synthetase C3D88_RS12520 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C3D88_RS12520 PF00132 Bacterial transferase hexapeptide (six repeats) C3D88_RS12525 PF07977 FabA-like domain C3D88_RS12530 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C3D88_RS12530 PF00132 Bacterial transferase hexapeptide (six repeats) C3D88_RS12535 PF03938 Outer membrane protein (OmpH-like) C3D88_RS12540 PF01103 Surface antigen C3D88_RS12540 PF07244 Surface antigen variable number repeat C3D88_RS12545 PF02163 Peptidase family M50 C3D88_RS12545 PF17820 PDZ domain C3D88_RS12550 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C3D88_RS12550 PF13288 DXP reductoisomerase C-terminal domain C3D88_RS12550 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C3D88_RS12560 PF01255 Putative undecaprenyl diphosphate synthase C3D88_RS12565 PF01765 Ribosome recycling factor C3D88_RS12570 PF00696 Amino acid kinase family C3D88_RS12575 PF00889 Elongation factor TS C3D88_RS12580 PF00318 Ribosomal protein S2 C3D88_RS12585 PF00557 Metallopeptidase family M24 C3D88_RS12590 PF01966 HD domain C3D88_RS12590 PF08335 GlnD PII-uridylyltransferase C3D88_RS12590 PF01909 Nucleotidyltransferase domain C3D88_RS12605 PF00156 Phosphoribosyl transferase domain C3D88_RS12620 PF08245 Mur ligase middle domain C3D88_RS12620 PF02875 Mur ligase family, glutamate ligase domain C3D88_RS12630 PF02465 Flagellar hook-associated protein 2 N-terminus C3D88_RS12630 PF07196 Flagellin hook IN motif C3D88_RS12630 PF07195 Flagellar hook-associated protein 2 C-terminus C3D88_RS12635 PF02561 Flagellar protein FliS C3D88_RS12655 PF01312 FlhB HrpN YscU SpaS Family C3D88_RS12665 PF02049 Flagellar hook-basal body complex protein FliE C3D88_RS12670 PF08345 Flagellar M-ring protein C-terminal C3D88_RS12670 PF01514 Secretory protein of YscJ/FliF family C3D88_RS12675 PF14842 FliG N-terminal domain C3D88_RS12675 PF01706 FliG C-terminal domain C3D88_RS12675 PF14841 FliG middle domain C3D88_RS12685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3D88_RS12685 PF18269 T3SS EscN ATPase C-terminal domain C3D88_RS12710 PF03748 Flagellar basal body-associated protein FliL C3D88_RS12715 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C3D88_RS12715 PF02154 Flagellar motor switch protein FliM C3D88_RS12720 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C3D88_RS12720 PF16973 Flagellar motor switch protein FliN N-terminal C3D88_RS12725 PF04347 Flagellar biosynthesis protein, FliO C3D88_RS12730 PF00813 FliP family C3D88_RS12735 PF01313 Bacterial export proteins, family 3 C3D88_RS12740 PF01311 Bacterial export proteins, family 1 C3D88_RS12750 PF08447 PAS fold C3D88_RS12750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3D88_RS12755 PF02203 Tar ligand binding domain homologue C3D88_RS12755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3D88_RS12755 PF00672 HAMP domain C3D88_RS12760 PF00672 HAMP domain C3D88_RS12760 PF02203 Tar ligand binding domain homologue C3D88_RS12760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3D88_RS12765 PF00669 Bacterial flagellin N-terminal helical region C3D88_RS12770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3D88_RS12770 PF00460 Flagella basal body rod protein C3D88_RS12775 PF10135 Rod binding protein C3D88_RS12775 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase C3D88_RS12780 PF02119 Flagellar P-ring protein C3D88_RS12785 PF02107 Flagellar L-ring protein C3D88_RS12790 PF00460 Flagella basal body rod protein C3D88_RS12790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3D88_RS12795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3D88_RS12795 PF00460 Flagella basal body rod protein C3D88_RS12800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3D88_RS12800 PF00460 Flagella basal body rod protein C3D88_RS12800 PF07559 Flagellar basal body protein FlaE C3D88_RS12805 PF03963 Flagellar hook capping protein - N-terminal region C3D88_RS12805 PF13860 FlgD Ig-like domain C3D88_RS12805 PF13861 FlgD Tudor-like domain C3D88_RS12810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3D88_RS12810 PF00460 Flagella basal body rod protein C3D88_RS12815 PF00460 Flagella basal body rod protein C3D88_RS12825 PF04316 Anti-sigma-28 factor, FlgM C3D88_RS12845 PF01312 FlhB HrpN YscU SpaS Family C3D88_RS12855 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS12860 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS12865 PF00005 ABC transporter C3D88_RS12875 PF02558 Ketopantoate reductase PanE/ApbA C3D88_RS12875 PF08546 Ketopantoate reductase PanE/ApbA C terminal C3D88_RS12880 PF13378 Enolase C-terminal domain-like C3D88_RS12885 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS12895 PF00694 Aconitase C-terminal domain C3D88_RS12900 PF00356 Bacterial regulatory proteins, lacI family C3D88_RS12905 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS12910 PF02515 CoA-transferase family III C3D88_RS12920 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS12925 PF13380 CoA binding domain C3D88_RS12925 PF13607 Succinyl-CoA ligase like flavodoxin domain C3D88_RS12930 PF07729 FCD domain C3D88_RS12930 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS12935 PF03328 HpcH/HpaI aldolase/citrate lyase family C3D88_RS12945 PF03466 LysR substrate binding domain C3D88_RS12945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS12955 PF12951 Passenger-associated-transport-repeat C3D88_RS12965 PF03551 Transcriptional regulator PadR-like family C3D88_RS12975 PF03372 Endonuclease/Exonuclease/phosphatase family C3D88_RS12980 PF13091 PLD-like domain C3D88_RS13025 PF16657 Maltogenic Amylase, C-terminal domain C3D88_RS13025 PF00128 Alpha amylase, catalytic domain C3D88_RS13030 PF00128 Alpha amylase, catalytic domain C3D88_RS13030 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C3D88_RS13030 PF02806 Alpha amylase, C-terminal all-beta domain C3D88_RS13035 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C3D88_RS13035 PF00128 Alpha amylase, catalytic domain C3D88_RS13040 PF00128 Alpha amylase, catalytic domain C3D88_RS13040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C3D88_RS13040 PF11941 Domain of unknown function (DUF3459) C3D88_RS13050 PF00128 Alpha amylase, catalytic domain C3D88_RS13060 PF08543 Phosphomethylpyrimidine kinase C3D88_RS13065 PF01168 Alanine racemase, N-terminal domain C3D88_RS13070 PF00155 Aminotransferase class I and II C3D88_RS13070 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS13085 PF00582 Universal stress protein family C3D88_RS13090 PF00248 Aldo/keto reductase family C3D88_RS13105 PF07681 DoxX C3D88_RS13125 PF00578 AhpC/TSA family C3D88_RS13130 PF03960 ArsC family C3D88_RS13135 PF02515 CoA-transferase family III C3D88_RS13155 PF00255 Glutathione peroxidase C3D88_RS13160 PF02798 Glutathione S-transferase, N-terminal domain C3D88_RS13160 PF00043 Glutathione S-transferase, C-terminal domain C3D88_RS13175 PF10437 Bacterial lipoate protein ligase C-terminus C3D88_RS13175 PF03099 Biotin/lipoate A/B protein ligase family C3D88_RS13190 PF02666 Phosphatidylserine decarboxylase C3D88_RS13195 PF01070 FMN-dependent dehydrogenase C3D88_RS13200 PF03180 NLPA lipoprotein C3D88_RS13205 PF08808 RES domain C3D88_RS13215 PF04241 Protein of unknown function (DUF423) C3D88_RS13235 PF13458 Periplasmic binding protein C3D88_RS13240 PF00005 ABC transporter C3D88_RS13240 PF17912 MalK OB fold domain C3D88_RS13245 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS13250 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS13255 PF13416 Bacterial extracellular solute-binding protein C3D88_RS13260 PF03807 NADP oxidoreductase coenzyme F420-dependent C3D88_RS13260 PF14748 Pyrroline-5-carboxylate reductase dimerisation C3D88_RS13265 PF02592 Putative vitamin uptake transporter C3D88_RS13280 PF13458 Periplasmic binding protein C3D88_RS13285 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS13290 PF11862 Domain of unknown function (DUF3382) C3D88_RS13290 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS13295 PF00005 ABC transporter C3D88_RS13295 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS13300 PF00005 ABC transporter C3D88_RS13305 PF01177 Asp/Glu/Hydantoin racemase C3D88_RS13330 PF04235 Protein of unknown function (DUF418) C3D88_RS13335 PF00521 DNA gyrase/topoisomerase IV, subunit A C3D88_RS13345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS13345 PF00986 DNA gyrase B subunit, carboxyl terminus C3D88_RS13345 PF01751 Toprim domain C3D88_RS13345 PF00204 DNA gyrase B C3D88_RS13350 PF00085 Thioredoxin C3D88_RS13355 PF07497 Rho termination factor, RNA-binding domain C3D88_RS13355 PF07498 Rho termination factor, N-terminal domain C3D88_RS13355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3D88_RS13365 PF03710 Glutamate-ammonia ligase adenylyltransferase C3D88_RS13365 PF08335 GlnD PII-uridylyltransferase C3D88_RS13370 PF02677 Epoxyqueuosine reductase QueH C3D88_RS13375 PF03313 Serine dehydratase alpha chain C3D88_RS13375 PF03315 Serine dehydratase beta chain C3D88_RS13380 PF02690 Na+/Pi-cotransporter C3D88_RS13385 PF01738 Dienelactone hydrolase family C3D88_RS13395 PF00476 DNA polymerase family A C3D88_RS13395 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C3D88_RS13395 PF01367 5'-3' exonuclease, C-terminal SAM fold C3D88_RS13395 PF01612 3'-5' exonuclease C3D88_RS13400 PF03641 Possible lysine decarboxylase C3D88_RS13415 PF00009 Elongation factor Tu GTP binding domain C3D88_RS13415 PF03144 Elongation factor Tu domain 2 C3D88_RS13415 PF00679 Elongation factor G C-terminus C3D88_RS13420 PF01509 TruB family pseudouridylate synthase (N terminal domain) C3D88_RS13420 PF16198 tRNA pseudouridylate synthase B C-terminal domain C3D88_RS13425 PF02033 Ribosome-binding factor A C3D88_RS13430 PF00009 Elongation factor Tu GTP binding domain C3D88_RS13430 PF11987 Translation-initiation factor 2 C3D88_RS13430 PF08364 Bacterial translation initiation factor IF-2 associated region C3D88_RS13430 PF04760 Translation initiation factor IF-2, N-terminal region C3D88_RS13435 PF08529 NusA N-terminal domain C3D88_RS13435 PF13184 NusA-like KH domain C3D88_RS13440 PF17384 RimP C-terminal SH3 domain C3D88_RS13440 PF02576 RimP N-terminal domain C3D88_RS13445 PF01479 S4 domain C3D88_RS13445 PF00849 RNA pseudouridylate synthase C3D88_RS13450 PF04079 Segregation and condensation complex subunit ScpB C3D88_RS13460 PF03466 LysR substrate binding domain C3D88_RS13460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS13465 PF00881 Nitroreductase family C3D88_RS13470 PF07683 Cobalamin synthesis protein cobW C-terminal domain C3D88_RS13470 PF02492 CobW/HypB/UreG, nucleotide-binding domain C3D88_RS13490 PF14497 Glutathione S-transferase, C-terminal domain C3D88_RS13490 PF02798 Glutathione S-transferase, N-terminal domain C3D88_RS13495 PF02401 LytB protein C3D88_RS13500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3D88_RS13505 PF04002 RadC-like JAB domain C3D88_RS13510 PF04199 Putative cyclase C3D88_RS13515 PF03301 Tryptophan 2,3-dioxygenase C3D88_RS13520 PF01197 Ribosomal protein L31 C3D88_RS13530 PF01554 MatE C3D88_RS13545 PF18073 Rubredoxin metal binding domain C3D88_RS13550 PF12450 von Willebrand factor C3D88_RS13550 PF00092 von Willebrand factor type A domain C3D88_RS13550 PF12034 Domain of unknown function (DUF3520) C3D88_RS13555 PF04542 Sigma-70 region 2 C3D88_RS13555 PF04545 Sigma-70, region 4 C3D88_RS13575 PF01168 Alanine racemase, N-terminal domain C3D88_RS13575 PF00842 Alanine racemase, C-terminal domain C3D88_RS13590 PF01593 Flavin containing amine oxidoreductase C3D88_RS13590 PF01593 Flavin containing amine oxidoreductase C3D88_RS13595 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C3D88_RS13605 PF01061 ABC-2 type transporter C3D88_RS13610 PF00005 ABC transporter C3D88_RS13630 PF02424 ApbE family C3D88_RS13635 PF00175 Oxidoreductase NAD-binding domain C3D88_RS13635 PF00258 Flavodoxin C3D88_RS13635 PF00667 FAD binding domain C3D88_RS13645 PF07969 Amidohydrolase family C3D88_RS13650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS13650 PF03466 LysR substrate binding domain C3D88_RS13660 PF09370 Phosphoenolpyruvate hydrolase-like C3D88_RS13675 PF03212 Pertactin C3D88_RS13675 PF03797 Autotransporter beta-domain C3D88_RS13695 PF00004 ATPase family associated with various cellular activities (AAA) C3D88_RS13695 PF07724 AAA domain (Cdc48 subfamily) C3D88_RS13695 PF17871 AAA lid domain C3D88_RS13695 PF02861 Clp amino terminal domain, pathogenicity island component C3D88_RS13695 PF10431 C-terminal, D2-small domain, of ClpB protein C3D88_RS13700 PF13545 Crp-like helix-turn-helix domain C3D88_RS13700 PF00027 Cyclic nucleotide-binding domain C3D88_RS13715 PF00293 NUDIX domain C3D88_RS13720 PF12843 Putative quorum-sensing-regulated virulence factor C3D88_RS13730 PF04542 Sigma-70 region 2 C3D88_RS13730 PF12680 SnoaL-like domain C3D88_RS13730 PF08281 Sigma-70, region 4 C3D88_RS13735 PF02627 Carboxymuconolactone decarboxylase family C3D88_RS13765 PF00155 Aminotransferase class I and II C3D88_RS13770 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS13775 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS13780 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS13785 PF00005 ABC transporter C3D88_RS13805 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family C3D88_RS13830 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS13835 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3D88_RS13835 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3D88_RS13840 PF03466 LysR substrate binding domain C3D88_RS13840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS13850 PF02016 LD-carboxypeptidase N-terminal domain C3D88_RS13850 PF17676 LD-carboxypeptidase C-terminal domain C3D88_RS13865 PF07690 Major Facilitator Superfamily C3D88_RS13875 PF03466 LysR substrate binding domain C3D88_RS13875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS13880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C3D88_RS13880 PF13378 Enolase C-terminal domain-like C3D88_RS13885 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS13905 PF02567 Phenazine biosynthesis-like protein C3D88_RS13915 PF03239 Iron permease FTR1 family C3D88_RS13925 PF10634 Fe2+ transport protein C3D88_RS13930 PF07879 PHB/PHA accumulation regulator DNA-binding domain C3D88_RS13930 PF05233 PHB accumulation regulatory domain C3D88_RS13935 PF00106 short chain dehydrogenase C3D88_RS13940 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus C3D88_RS13945 PF02578 Multi-copper polyphenol oxidoreductase laccase C3D88_RS13950 PF01479 S4 domain C3D88_RS13950 PF00849 RNA pseudouridylate synthase C3D88_RS13955 PF13525 Outer membrane lipoprotein C3D88_RS13960 PF13307 Helicase C-terminal domain C3D88_RS13960 PF04851 Type III restriction enzyme, res subunit C3D88_RS13965 PF17674 HHH domain C3D88_RS13965 PF09371 Tex-like protein N-terminal domain C3D88_RS13965 PF16921 Tex protein YqgF-like domain C3D88_RS13965 PF00575 S1 RNA binding domain C3D88_RS13970 PF00579 tRNA synthetases class I (W and Y) C3D88_RS13995 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS14005 PF03466 LysR substrate binding domain C3D88_RS14005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS14015 PF03969 AFG1-like ATPase C3D88_RS14020 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS14020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3D88_RS14025 PF02817 e3 binding domain C3D88_RS14025 PF00364 Biotin-requiring enzyme C3D88_RS14025 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3D88_RS14030 PF00676 Dehydrogenase E1 component C3D88_RS14030 PF16078 2-oxoglutarate dehydrogenase N-terminus C3D88_RS14030 PF16870 2-oxoglutarate dehydrogenase C-terminal C3D88_RS14030 PF02779 Transketolase, pyrimidine binding domain C3D88_RS14040 PF01037 Lrp/AsnC ligand binding domain C3D88_RS14045 PF17831 Pyruvate dehydrogenase E1 component middle domain C3D88_RS14045 PF00456 Transketolase, thiamine diphosphate binding domain C3D88_RS14050 PF01515 Phosphate acetyl/butaryl transferase C3D88_RS14050 PF03949 Malic enzyme, NAD binding domain C3D88_RS14050 PF00390 Malic enzyme, N-terminal domain C3D88_RS14055 PF16970 Type-1 fimbrial protein, A C3D88_RS14070 PF01272 Transcription elongation factor, GreA/GreB, C-term C3D88_RS14070 PF03449 Transcription elongation factor, N-terminal C3D88_RS14075 PF02811 PHP domain C3D88_RS14085 PF03772 Competence protein C3D88_RS14085 PF13567 Domain of unknown function (DUF4131) C3D88_RS14085 PF00753 Metallo-beta-lactamase superfamily C3D88_RS14110 PF01026 TatD related DNase C3D88_RS14115 PF00005 ABC transporter C3D88_RS14120 PF02687 FtsX-like permease family C3D88_RS14120 PF12704 MacB-like periplasmic core domain C3D88_RS14130 PF01368 DHH family C3D88_RS14130 PF17768 RecJ OB domain C3D88_RS14130 PF02272 DHHA1 domain C3D88_RS14140 PF00106 short chain dehydrogenase C3D88_RS14145 PF01336 OB-fold nucleic acid binding domain C3D88_RS14145 PF00152 tRNA synthetases class II (D, K and N) C3D88_RS14155 PF00440 Bacterial regulatory proteins, tetR family C3D88_RS14155 PF17932 Tetracyclin repressor-like, C-terminal domain C3D88_RS14160 PF00501 AMP-binding enzyme C3D88_RS14165 PF00005 ABC transporter C3D88_RS14185 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS14185 PF00005 ABC transporter C3D88_RS14195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS14195 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS14195 PF07689 KaiB domain C3D88_RS14200 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS14200 PF00072 Response regulator receiver domain C3D88_RS14205 PF02696 Uncharacterized ACR, YdiU/UPF0061 family C3D88_RS14215 PF03631 Virulence factor BrkB C3D88_RS14230 PF01207 Dihydrouridine synthase (Dus) C3D88_RS14235 PF01636 Phosphotransferase enzyme family C3D88_RS14260 PF01985 CRS1 / YhbY (CRM) domain C3D88_RS14265 PF01728 FtsJ-like methyltransferase C3D88_RS14270 PF00004 ATPase family associated with various cellular activities (AAA) C3D88_RS14270 PF06480 FtsH Extracellular C3D88_RS14270 PF01434 Peptidase family M41 C3D88_RS14270 PF17862 AAA+ lid domain C3D88_RS14275 PF00809 Pterin binding enzyme C3D88_RS14280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3D88_RS14280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3D88_RS14280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3D88_RS14280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3D88_RS14290 PF02541 Ppx/GppA phosphatase family C3D88_RS14295 PF17941 Polyphosphate kinase C-terminal domain 1 C3D88_RS14295 PF02503 Polyphosphate kinase middle domain C3D88_RS14295 PF13089 Polyphosphate kinase N-terminal domain C3D88_RS14295 PF13090 Polyphosphate kinase C-terminal domain 2 C3D88_RS14300 PF12849 PBP superfamily domain C3D88_RS14305 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS14310 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS14315 PF00005 ABC transporter C3D88_RS14330 PF01337 Barstar (barnase inhibitor) C3D88_RS14340 PF03949 Malic enzyme, NAD binding domain C3D88_RS14340 PF01515 Phosphate acetyl/butaryl transferase C3D88_RS14340 PF00390 Malic enzyme, N-terminal domain C3D88_RS14350 PF00155 Aminotransferase class I and II C3D88_RS14360 PF01464 Transglycosylase SLT domain C3D88_RS14360 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain C3D88_RS14365 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C3D88_RS14390 PF14824 Sirohaem biosynthesis protein central C3D88_RS14390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3D88_RS14390 PF10414 Sirohaem synthase dimerisation region C3D88_RS14395 PF03212 Pertactin C3D88_RS14395 PF03797 Autotransporter beta-domain C3D88_RS14410 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family C3D88_RS14415 PF02547 Queuosine biosynthesis protein C3D88_RS14420 PF01702 Queuine tRNA-ribosyltransferase C3D88_RS14425 PF02699 Preprotein translocase subunit C3D88_RS14430 PF13721 SecD export protein N-terminal TM region C3D88_RS14430 PF07549 SecD/SecF GG Motif C3D88_RS14430 PF02355 Protein export membrane protein C3D88_RS14435 PF02355 Protein export membrane protein C3D88_RS14435 PF07549 SecD/SecF GG Motif C3D88_RS14450 PF04055 Radical SAM superfamily C3D88_RS14450 PF01938 TRAM domain C3D88_RS14450 PF00919 Uncharacterized protein family UPF0004 C3D88_RS14455 PF02562 PhoH-like protein C3D88_RS14460 PF02130 Uncharacterized protein family UPF0054 C3D88_RS14465 PF03471 Transporter associated domain C3D88_RS14465 PF00571 CBS domain C3D88_RS14470 PF00795 Carbon-nitrogen hydrolase C3D88_RS14475 PF00248 Aldo/keto reductase family C3D88_RS14500 PF04344 Chemotaxis phosphatase, CheZ C3D88_RS14505 PF00072 Response regulator receiver domain C3D88_RS14510 PF01339 CheB methylesterase C3D88_RS14510 PF00072 Response regulator receiver domain C3D88_RS14520 PF02203 Tar ligand binding domain homologue C3D88_RS14520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3D88_RS14520 PF00672 HAMP domain C3D88_RS14525 PF01584 CheW-like domain C3D88_RS14530 PF01627 Hpt domain C3D88_RS14530 PF02895 Signal transducing histidine kinase, homodimeric domain C3D88_RS14530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS14530 PF01584 CheW-like domain C3D88_RS14530 PF09078 CheY binding C3D88_RS14535 PF00072 Response regulator receiver domain C3D88_RS14540 PF13677 Membrane MotB of proton-channel complex MotA/MotB C3D88_RS14540 PF00691 OmpA family C3D88_RS14545 PF01618 MotA/TolQ/ExbB proton channel family C3D88_RS14550 PF05280 Flagellar transcriptional activator (FlhC) C3D88_RS14555 PF05247 Flagellar transcriptional activator (FlhD) C3D88_RS14560 PF04542 Sigma-70 region 2 C3D88_RS14560 PF04539 Sigma-70 region 3 C3D88_RS14560 PF04545 Sigma-70, region 4 C3D88_RS14570 PF01176 Translation initiation factor 1A / IF-1 C3D88_RS14580 PF01476 LysM domain C3D88_RS14580 PF01551 Peptidase family M23 C3D88_RS14580 PF08525 Opacity-associated protein A N-terminal motif C3D88_RS14590 PF00994 Probable molybdopterin binding domain C3D88_RS14600 PF03591 AzlC protein C3D88_RS14610 PF01556 DnaJ C terminal domain C3D88_RS14610 PF00226 DnaJ domain C3D88_RS14630 PF02798 Glutathione S-transferase, N-terminal domain C3D88_RS14630 PF14834 Glutathione S-transferase, C-terminal domain C3D88_RS14635 PF11339 Protein of unknown function (DUF3141) C3D88_RS14640 PF01515 Phosphate acetyl/butaryl transferase C3D88_RS14645 PF00871 Acetokinase family C3D88_RS14655 PF00162 Phosphoglycerate kinase C3D88_RS14660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C3D88_RS14660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C3D88_RS14665 PF02779 Transketolase, pyrimidine binding domain C3D88_RS14665 PF00456 Transketolase, thiamine diphosphate binding domain C3D88_RS14665 PF02780 Transketolase, C-terminal domain C3D88_RS14670 PF04452 RNA methyltransferase C3D88_RS14680 PF00700 Bacterial flagellin C-terminal helical region C3D88_RS14680 PF00669 Bacterial flagellin N-terminal helical region C3D88_RS14685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3D88_RS14685 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS14690 PF02817 e3 binding domain C3D88_RS14690 PF00364 Biotin-requiring enzyme C3D88_RS14690 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3D88_RS14695 PF00456 Transketolase, thiamine diphosphate binding domain C3D88_RS14695 PF17831 Pyruvate dehydrogenase E1 component middle domain C3D88_RS14700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS14700 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS14700 PF00989 PAS fold C3D88_RS14705 PF00196 Bacterial regulatory proteins, luxR family C3D88_RS14705 PF00072 Response regulator receiver domain C3D88_RS14710 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C3D88_RS14710 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C3D88_RS14715 PF01432 Peptidase family M3 C3D88_RS14720 PF02630 SCO1/SenC C3D88_RS14730 PF02321 Outer membrane efflux protein C3D88_RS14735 PF00873 AcrB/AcrD/AcrF family C3D88_RS14745 PF03466 LysR substrate binding domain C3D88_RS14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS14750 PF01479 S4 domain C3D88_RS14750 PF00849 RNA pseudouridylate synthase C3D88_RS14755 PF04345 Chorismate lyase C3D88_RS14770 PF00248 Aldo/keto reductase family C3D88_RS14780 PF00293 NUDIX domain C3D88_RS14785 PF01245 Ribosomal protein L19 C3D88_RS14800 PF04055 Radical SAM superfamily C3D88_RS14810 PF01507 Phosphoadenosine phosphosulfate reductase family C3D88_RS14820 PF17850 CysA C-terminal regulatory domain C3D88_RS14820 PF00005 ABC transporter C3D88_RS14820 PF12857 TOBE-like domain C3D88_RS14840 PF10417 C-terminal domain of 1-Cys peroxiredoxin C3D88_RS14840 PF00578 AhpC/TSA family C3D88_RS14845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS14845 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3D88_RS14845 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS14845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS14850 PF01012 Electron transfer flavoprotein domain C3D88_RS14850 PF00766 Electron transfer flavoprotein FAD-binding domain C3D88_RS14855 PF01012 Electron transfer flavoprotein domain C3D88_RS14860 PF00850 Histone deacetylase domain C3D88_RS14865 PF13406 Transglycosylase SLT domain C3D88_RS14870 PF00291 Pyridoxal-phosphate dependent enzyme C3D88_RS14880 PF10531 SLBB domain C3D88_RS14885 PF01370 NAD dependent epimerase/dehydratase family C3D88_RS14890 PF00294 pfkB family carbohydrate kinase C3D88_RS14895 PF18073 Rubredoxin metal binding domain C3D88_RS14905 PF00216 Bacterial DNA-binding protein C3D88_RS14910 PF00575 S1 RNA binding domain C3D88_RS14915 PF02224 Cytidylate kinase C3D88_RS14920 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3D88_RS14925 PF02153 Prephenate dehydrogenase C3D88_RS14930 PF01817 Chorismate mutase type II C3D88_RS14930 PF00800 Prephenate dehydratase C3D88_RS14930 PF01842 ACT domain C3D88_RS14935 PF00266 Aminotransferase class-V C3D88_RS14940 PF00521 DNA gyrase/topoisomerase IV, subunit A C3D88_RS14940 PF03989 DNA gyrase C-terminal domain, beta-propeller C3D88_RS14945 PF00691 OmpA family C3D88_RS14955 PF13419 Haloacid dehalogenase-like hydrolase C3D88_RS14960 PF07690 Major Facilitator Superfamily C3D88_RS14995 PF03466 LysR substrate binding domain C3D88_RS14995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS15000 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS15010 PF00817 impB/mucB/samB family C3D88_RS15010 PF11799 impB/mucB/samB family C-terminal domain C3D88_RS15010 PF11798 IMS family HHH motif C3D88_RS15025 PF00326 Prolyl oligopeptidase family C3D88_RS15030 PF17092 Penicillin-binding protein OB-like domain C3D88_RS15030 PF00912 Transglycosylase C3D88_RS15030 PF00905 Penicillin binding protein transpeptidase domain C3D88_RS15035 PF00149 Calcineurin-like phosphoesterase C3D88_RS15050 PF00248 Aldo/keto reductase family C3D88_RS15055 PF00248 Aldo/keto reductase family C3D88_RS15060 PF00005 ABC transporter C3D88_RS15060 PF00664 ABC transporter transmembrane region C3D88_RS15110 PF02785 Biotin carboxylase C-terminal domain C3D88_RS15110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3D88_RS15110 PF00289 Biotin carboxylase, N-terminal domain C3D88_RS15115 PF07702 UTRA domain C3D88_RS15115 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS15135 PF00682 HMGL-like C3D88_RS15135 PF00364 Biotin-requiring enzyme C3D88_RS15135 PF02436 Conserved carboxylase domain C3D88_RS15140 PF00364 Biotin-requiring enzyme C3D88_RS15150 PF01966 HD domain C3D88_RS15170 PF07317 Flagellar regulator YcgR C3D88_RS15170 PF07238 PilZ domain C3D88_RS15190 PF05724 Thiopurine S-methyltransferase (TPMT) C3D88_RS15195 PF00005 ABC transporter C3D88_RS15195 PF00664 ABC transporter transmembrane region C3D88_RS15210 PF00205 Thiamine pyrophosphate enzyme, central domain C3D88_RS15210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS15210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS15215 PF10369 Small subunit of acetolactate synthase C3D88_RS15220 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C3D88_RS15220 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C3D88_RS15225 PF01066 CDP-alcohol phosphatidyltransferase C3D88_RS15240 PF00312 Ribosomal protein S15 C3D88_RS15245 PF00575 S1 RNA binding domain C3D88_RS15245 PF03725 3' exoribonuclease family, domain 2 C3D88_RS15245 PF01138 3' exoribonuclease family, domain 1 C3D88_RS15245 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C3D88_RS15245 PF00013 KH domain C3D88_RS15260 PF13291 ACT domain C3D88_RS15260 PF00291 Pyridoxal-phosphate dependent enzyme C3D88_RS15275 PF16197 Ketoacyl-synthetase C-terminal extension C3D88_RS15275 PF08240 Alcohol dehydrogenase GroES-like domain C3D88_RS15275 PF00698 Acyl transferase domain C3D88_RS15275 PF08659 KR domain C3D88_RS15275 PF00550 Phosphopantetheine attachment site C3D88_RS15275 PF00109 Beta-ketoacyl synthase, N-terminal domain C3D88_RS15275 PF08990 Erythronolide synthase docking C3D88_RS15275 PF14765 Polyketide synthase dehydratase C3D88_RS15275 PF02801 Beta-ketoacyl synthase, C-terminal domain C3D88_RS15280 PF00121 Triosephosphate isomerase C3D88_RS15285 PF03840 Preprotein translocase SecG subunit C3D88_RS15295 PF02028 BCCT, betaine/carnitine/choline family transporter C3D88_RS15305 PF07476 Methylaspartate ammonia-lyase C-terminus C3D88_RS15305 PF05034 Methylaspartate ammonia-lyase N-terminus C3D88_RS15310 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS15325 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS15340 PF03466 LysR substrate binding domain C3D88_RS15340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS15345 PF01053 Cys/Met metabolism PLP-dependent enzyme C3D88_RS15350 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family C3D88_RS15365 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS15370 PF01266 FAD dependent oxidoreductase C3D88_RS15380 PF01968 Hydantoinase/oxoprolinase C3D88_RS15380 PF05378 Hydantoinase/oxoprolinase N-terminal region C3D88_RS15390 PF00127 Copper binding proteins, plastocyanin/azurin family C3D88_RS15400 PF02321 Outer membrane efflux protein C3D88_RS15405 PF00873 AcrB/AcrD/AcrF family C3D88_RS15410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3D88_RS15415 PF01638 HxlR-like helix-turn-helix C3D88_RS15425 PF02028 BCCT, betaine/carnitine/choline family transporter C3D88_RS15430 PF03466 LysR substrate binding domain C3D88_RS15430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS15435 PF00781 Diacylglycerol kinase catalytic domain C3D88_RS15445 PF01569 PAP2 superfamily C3D88_RS15475 PF13609 Gram-negative porin C3D88_RS15480 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C3D88_RS15485 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C3D88_RS15490 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C3D88_RS15495 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C3D88_RS15505 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C3D88_RS15505 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C3D88_RS15505 PF10531 SLBB domain C3D88_RS15510 PF00384 Molybdopterin oxidoreductase C3D88_RS15510 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal C3D88_RS15510 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C3D88_RS15515 PF00146 NADH dehydrogenase C3D88_RS15520 PF12838 4Fe-4S dicluster domain C3D88_RS15525 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C3D88_RS15530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C3D88_RS15535 PF00361 Proton-conducting membrane transporter C3D88_RS15535 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C3D88_RS15540 PF00361 Proton-conducting membrane transporter C3D88_RS15540 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus C3D88_RS15545 PF00361 Proton-conducting membrane transporter C3D88_RS15555 PF00593 TonB dependent receptor C3D88_RS15555 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS15560 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS15560 PF00593 TonB dependent receptor C3D88_RS15575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS15575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS15575 PF00205 Thiamine pyrophosphate enzyme, central domain C3D88_RS15580 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS15585 PF03466 LysR substrate binding domain C3D88_RS15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS15595 PF17757 UvrB interaction domain C3D88_RS15595 PF03461 TRCF domain C3D88_RS15595 PF00271 Helicase conserved C-terminal domain C3D88_RS15595 PF00270 DEAD/DEAH box helicase C3D88_RS15595 PF02559 CarD-like/TRCF domain C3D88_RS15600 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C3D88_RS15605 PF02542 YgbB family C3D88_RS15620 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C3D88_RS15625 PF01433 Peptidase family M1 domain C3D88_RS15625 PF17432 Domain of unknown function (DUF3458_C) ARM repeats C3D88_RS15625 PF11940 Domain of unknown function (DUF3458) Ig-like fold C3D88_RS15645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS15645 PF00205 Thiamine pyrophosphate enzyme, central domain C3D88_RS15645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS15655 PF09084 NMT1/THI5 like C3D88_RS15660 PF00005 ABC transporter C3D88_RS15665 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS15675 PF00501 AMP-binding enzyme C3D88_RS15675 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS15680 PF08240 Alcohol dehydrogenase GroES-like domain C3D88_RS15680 PF00107 Zinc-binding dehydrogenase C3D88_RS15685 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS15685 PF07729 FCD domain C3D88_RS15695 PF07729 FCD domain C3D88_RS15695 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS15700 PF00205 Thiamine pyrophosphate enzyme, central domain C3D88_RS15700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS15700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS15720 PF01063 Amino-transferase class IV C3D88_RS15725 PF00005 ABC transporter C3D88_RS15730 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS15740 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS15745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS15745 PF03466 LysR substrate binding domain C3D88_RS15750 PF02321 Outer membrane efflux protein C3D88_RS15755 PF13533 Biotin-lipoyl like C3D88_RS15760 PF03412 Peptidase C39 family C3D88_RS15760 PF00664 ABC transporter transmembrane region C3D88_RS15760 PF00005 ABC transporter C3D88_RS15765 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) C3D88_RS15765 PF03497 Anthrax toxin LF subunit C3D88_RS15765 PF02382 N-terminal domain in RTX protein C3D88_RS15775 PF02794 RTX toxin acyltransferase family C3D88_RS15780 PF00171 Aldehyde dehydrogenase family C3D88_RS15785 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS15795 PF01266 FAD dependent oxidoreductase C3D88_RS15800 PF02538 Hydantoinase B/oxoprolinase C3D88_RS15805 PF05378 Hydantoinase/oxoprolinase N-terminal region C3D88_RS15805 PF01968 Hydantoinase/oxoprolinase C3D88_RS15810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS15810 PF03466 LysR substrate binding domain C3D88_RS15820 PF00348 Polyprenyl synthetase C3D88_RS15830 PF00829 Ribosomal prokaryotic L21 protein C3D88_RS15835 PF01016 Ribosomal L27 protein C3D88_RS15840 PF01926 50S ribosome-binding GTPase C3D88_RS15840 PF01018 GTP1/OBG C3D88_RS15845 PF01472 PUA domain C3D88_RS15845 PF00696 Amino acid kinase family C3D88_RS15895 PF04773 FecR protein C3D88_RS15895 PF16220 Domain of unknown function (DUF4880) C3D88_RS15900 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS15900 PF00593 TonB dependent receptor C3D88_RS15905 PF04264 YceI-like domain C3D88_RS15915 PF16653 Saccharopine dehydrogenase C-terminal domain C3D88_RS15915 PF03435 Saccharopine dehydrogenase NADP binding domain C3D88_RS15920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C3D88_RS15940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS15945 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS15950 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS15955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS15955 PF00005 ABC transporter C3D88_RS15960 PF01425 Amidase C3D88_RS15965 PF00202 Aminotransferase class-III C3D88_RS15990 PF01329 Pterin 4 alpha carbinolamine dehydratase C3D88_RS16000 PF00483 Nucleotidyl transferase C3D88_RS16005 PF01636 Phosphotransferase enzyme family C3D88_RS16010 PF04453 LPS transport system D C3D88_RS16015 PF09312 SurA N-terminal domain C3D88_RS16015 PF00639 PPIC-type PPIASE domain C3D88_RS16020 PF00398 Ribosomal RNA adenine dimethylase C3D88_RS16025 PF02595 Glycerate kinase family C3D88_RS16030 PF02887 Pyruvate kinase, alpha/beta domain C3D88_RS16030 PF00224 Pyruvate kinase, barrel domain C3D88_RS16035 PF07670 Nucleoside recognition C3D88_RS16060 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS16065 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS16070 PF00005 ABC transporter C3D88_RS16075 PF01032 FecCD transport family C3D88_RS16085 PF00691 OmpA family C3D88_RS16090 PF04052 TolB amino-terminal domain C3D88_RS16090 PF07676 WD40-like Beta Propeller Repeat C3D88_RS16100 PF02472 Biopolymer transport protein ExbD/TolR C3D88_RS16105 PF01618 MotA/TolQ/ExbB proton channel family C3D88_RS16110 PF03061 Thioesterase superfamily C3D88_RS16115 PF04073 Aminoacyl-tRNA editing domain C3D88_RS16115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3D88_RS16115 PF03129 Anticodon binding domain C3D88_RS16120 PF00293 NUDIX domain C3D88_RS16125 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS16125 PF00072 Response regulator receiver domain C3D88_RS16135 PF02586 SOS response associated peptidase (SRAP) C3D88_RS16210 PF06791 Prophage tail length tape measure protein C3D88_RS16350 PF03180 NLPA lipoprotein C3D88_RS16360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3D88_RS16360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3D88_RS16365 PF00005 ABC transporter C3D88_RS16370 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS16370 PF00005 ABC transporter C3D88_RS16375 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS16380 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS16385 PF13458 Periplasmic binding protein C3D88_RS16390 PF01425 Amidase C3D88_RS16395 PF00484 Carbonic anhydrase C3D88_RS16410 PF00570 HRDC domain C3D88_RS16410 PF16124 RecQ zinc-binding C3D88_RS16410 PF09382 RQC domain C3D88_RS16410 PF00271 Helicase conserved C-terminal domain C3D88_RS16410 PF00270 DEAD/DEAH box helicase C3D88_RS16415 PF17864 RuvB AAA lid domain C3D88_RS16415 PF05496 Holliday junction DNA helicase RuvB P-loop domain C3D88_RS16415 PF05491 RuvB C-terminal winged helix domain C3D88_RS16420 PF00291 Pyridoxal-phosphate dependent enzyme C3D88_RS16425 PF01370 NAD dependent epimerase/dehydratase family C3D88_RS16430 PF07499 RuvA, C-terminal domain C3D88_RS16430 PF01330 RuvA N terminal domain C3D88_RS16435 PF02075 Crossover junction endodeoxyribonuclease RuvC C3D88_RS16440 PF01808 AICARFT/IMPCHase bienzyme C3D88_RS16440 PF02142 MGS-like domain C3D88_RS16445 PF02954 Bacterial regulatory protein, Fis family C3D88_RS16450 PF01207 Dihydrouridine synthase (Dus) C3D88_RS16455 PF01494 FAD binding domain C3D88_RS16465 PF00557 Metallopeptidase family M24 C3D88_RS16465 PF05195 Aminopeptidase P, N-terminal domain C3D88_RS16490 PF13609 Gram-negative porin C3D88_RS16500 PF00483 Nucleotidyl transferase C3D88_RS16505 PF13181 Tetratricopeptide repeat C3D88_RS16505 PF01435 Peptidase family M48 C3D88_RS16510 PF00561 alpha/beta hydrolase fold C3D88_RS16525 PF01063 Amino-transferase class IV C3D88_RS16540 PF00270 DEAD/DEAH box helicase C3D88_RS16540 PF00271 Helicase conserved C-terminal domain C3D88_RS16560 PF00994 Probable molybdopterin binding domain C3D88_RS16560 PF02464 Competence-damaged protein C3D88_RS16560 PF18146 Damage-inducible protein CinA KH domain C3D88_RS16565 PF09339 IclR helix-turn-helix domain C3D88_RS16565 PF01614 Bacterial transcriptional regulator C3D88_RS16570 PF18807 Tripartite Tc toxins repeat C3D88_RS16570 PF05785 Rho-activating domain of cytotoxic necrotizing factor C3D88_RS16575 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS16585 PF01180 Dihydroorotate dehydrogenase C3D88_RS16590 PF04376 Arginine-tRNA-protein transferase, N terminus C3D88_RS16590 PF04377 Arginine-tRNA-protein transferase, C terminus C3D88_RS16605 PF03466 LysR substrate binding domain C3D88_RS16605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS16645 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS16645 PF07729 FCD domain C3D88_RS16650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS16650 PF00205 Thiamine pyrophosphate enzyme, central domain C3D88_RS16650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS16655 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS16660 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C3D88_RS16665 PF01515 Phosphate acetyl/butaryl transferase C3D88_RS16665 PF03949 Malic enzyme, NAD binding domain C3D88_RS16665 PF00390 Malic enzyme, N-terminal domain C3D88_RS16675 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS16680 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS16685 PF00005 ABC transporter C3D88_RS16685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS16700 PF03466 LysR substrate binding domain C3D88_RS16700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS16715 PF01022 Bacterial regulatory protein, arsR family C3D88_RS16730 PF03594 Benzoate membrane transport protein C3D88_RS16735 PF00037 4Fe-4S binding domain C3D88_RS16740 PF01467 Cytidylyltransferase-like C3D88_RS16750 PF00448 SRP54-type protein, GTPase domain C3D88_RS16750 PF02881 SRP54-type protein, helical bundle domain C3D88_RS16760 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS16765 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS16800 PF00925 GTP cyclohydrolase II C3D88_RS16800 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C3D88_RS16805 PF00885 6,7-dimethyl-8-ribityllumazine synthase C3D88_RS16810 PF01029 NusB family C3D88_RS16815 PF00586 AIR synthase related protein, N-terminal domain C3D88_RS16815 PF02769 AIR synthase related protein, C-terminal domain C3D88_RS16820 PF04608 Phosphatidylglycerophosphatase A C3D88_RS16825 PF00994 Probable molybdopterin binding domain C3D88_RS16825 PF02464 Competence-damaged protein C3D88_RS16825 PF18146 Damage-inducible protein CinA KH domain C3D88_RS16830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C3D88_RS16835 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS16840 PF01219 Prokaryotic diacylglycerol kinase C3D88_RS16845 PF03631 Virulence factor BrkB C3D88_RS16850 PF03212 Pertactin C3D88_RS16850 PF03797 Autotransporter beta-domain C3D88_RS16855 PF00118 TCP-1/cpn60 chaperonin family C3D88_RS16860 PF00166 Chaperonin 10 Kd subunit C3D88_RS16880 PF00890 FAD binding domain C3D88_RS16895 PF03466 LysR substrate binding domain C3D88_RS16895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS16900 PF00890 FAD binding domain C3D88_RS16925 PF00990 Diguanylate cyclase, GGDEF domain C3D88_RS16930 PF00072 Response regulator receiver domain C3D88_RS16965 PF10017 Histidine-specific methyltransferase, SAM-dependent C3D88_RS16975 PF13091 PLD-like domain C3D88_RS16975 PF13396 Phospholipase_D-nuclease N-terminal C3D88_RS16985 PF01645 Conserved region in glutamate synthase C3D88_RS16990 PF04143 Sulphur transport C3D88_RS16995 PF03547 Membrane transport protein C3D88_RS17000 PF13673 Acetyltransferase (GNAT) domain C3D88_RS17020 PF00773 RNB domain C3D88_RS17020 PF17876 Cold shock domain C3D88_RS17020 PF08461 Ribonuclease R winged-helix domain C3D88_RS17020 PF00575 S1 RNA binding domain C3D88_RS17020 PF08206 Ribonuclease B OB domain C3D88_RS17025 PF00588 SpoU rRNA Methylase family C3D88_RS17025 PF08032 RNA 2'-O ribose methyltransferase substrate binding C3D88_RS17030 PF01053 Cys/Met metabolism PLP-dependent enzyme C3D88_RS17035 PF18331 PKHD-type hydroxylase C-terminal domain C3D88_RS17035 PF13640 2OG-Fe(II) oxygenase superfamily C3D88_RS17040 PF00216 Bacterial DNA-binding protein C3D88_RS17055 PF01618 MotA/TolQ/ExbB proton channel family C3D88_RS17060 PF02472 Biopolymer transport protein ExbD/TolR C3D88_RS17065 PF00072 Response regulator receiver domain C3D88_RS17065 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS17070 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS17070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS17070 PF08521 Two-component sensor kinase N-terminal C3D88_RS17075 PF02705 K+ potassium transporter C3D88_RS17080 PF00764 Arginosuccinate synthase C3D88_RS17085 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3D88_RS17085 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3D88_RS17090 PF00202 Aminotransferase class-III C3D88_RS17100 PF03466 LysR substrate binding domain C3D88_RS17100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS17110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3D88_RS17110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3D88_RS17115 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS17130 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS17130 PF07729 FCD domain C3D88_RS17140 PF07690 Major Facilitator Superfamily C3D88_RS17150 PF02627 Carboxymuconolactone decarboxylase family C3D88_RS17155 PF00578 AhpC/TSA family C3D88_RS17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS17160 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS17160 PF00672 HAMP domain C3D88_RS17170 PF00072 Response regulator receiver domain C3D88_RS17170 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS17175 PF00814 Glycoprotease family C3D88_RS17180 PF03167 Uracil DNA glycosylase superfamily C3D88_RS17185 PF07690 Major Facilitator Superfamily C3D88_RS17190 PF06470 SMC proteins Flexible Hinge Domain C3D88_RS17190 PF02463 RecF/RecN/SMC N terminal domain C3D88_RS17200 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C3D88_RS17200 PF12826 Helix-hairpin-helix motif C3D88_RS17200 PF03120 NAD-dependent DNA ligase OB-fold domain C3D88_RS17200 PF01653 NAD-dependent DNA ligase adenylation domain C3D88_RS17200 PF00533 BRCA1 C Terminus (BRCT) domain C3D88_RS17215 PF04279 Intracellular septation protein A C3D88_RS17220 PF01641 SelR domain C3D88_RS17225 PF00005 ABC transporter C3D88_RS17230 PF02361 Cobalt transport protein C3D88_RS17235 PF02632 BioY family C3D88_RS17250 PF00005 ABC transporter C3D88_RS17250 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS17255 PF01063 Amino-transferase class IV C3D88_RS17270 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS17280 PF00005 ABC transporter C3D88_RS17285 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS17285 PF00005 ABC transporter C3D88_RS17290 PF10576 Iron-sulfur binding domain of endonuclease III C3D88_RS17290 PF00633 Helix-hairpin-helix motif C3D88_RS17290 PF00730 HhH-GPD superfamily base excision DNA repair protein C3D88_RS17295 PF04060 Putative Fe-S cluster C3D88_RS17305 PF00970 Oxidoreductase FAD-binding domain C3D88_RS17305 PF00175 Oxidoreductase NAD-binding domain C3D88_RS17310 PF11953 Domain of unknown function (DUF3470) C3D88_RS17310 PF00037 4Fe-4S binding domain C3D88_RS17315 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C3D88_RS17315 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C3D88_RS17320 PF01042 Endoribonuclease L-PSP C3D88_RS17330 PF06167 Glucose-regulated metallo-peptidase M90 C3D88_RS17335 PF02824 TGS domain C3D88_RS17335 PF04607 Region found in RelA / SpoT proteins C3D88_RS17335 PF13291 ACT domain C3D88_RS17340 PF01546 Peptidase family M20/M25/M40 C3D88_RS17340 PF07687 Peptidase dimerisation domain C3D88_RS17345 PF00291 Pyridoxal-phosphate dependent enzyme C3D88_RS17350 PF00290 Tryptophan synthase alpha chain C3D88_RS17355 PF01039 Carboxyl transferase domain C3D88_RS17355 PF17848 Acetyl-coA carboxylase zinc finger domain C3D88_RS17375 PF12111 Polyribonucleotide phosphorylase C terminal C3D88_RS17375 PF10150 Ribonuclease E/G family C3D88_RS17375 PF00575 S1 RNA binding domain C3D88_RS17380 PF00849 RNA pseudouridylate synthase C3D88_RS17380 PF01479 S4 domain C3D88_RS17385 PF13419 Haloacid dehalogenase-like hydrolase C3D88_RS17390 PF00174 Oxidoreductase molybdopterin binding domain C3D88_RS17395 PF01794 Ferric reductase like transmembrane component C3D88_RS17410 PF02515 CoA-transferase family III C3D88_RS17415 PF03466 LysR substrate binding domain C3D88_RS17415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS17425 PF02515 CoA-transferase family III C3D88_RS17440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS17440 PF03466 LysR substrate binding domain C3D88_RS17445 PF01042 Endoribonuclease L-PSP C3D88_RS17450 PF00175 Oxidoreductase NAD-binding domain C3D88_RS17450 PF00970 Oxidoreductase FAD-binding domain C3D88_RS17450 PF00042 Globin C3D88_RS17455 PF02667 Short chain fatty acid transporter C3D88_RS17460 PF00171 Aldehyde dehydrogenase family C3D88_RS17465 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS17465 PF07729 FCD domain C3D88_RS17475 PF00313 'Cold-shock' DNA-binding domain C3D88_RS17480 PF03466 LysR substrate binding domain C3D88_RS17480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS17505 PF00108 Thiolase, N-terminal domain C3D88_RS17505 PF02803 Thiolase, C-terminal domain C3D88_RS17515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS17515 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS17515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS17520 PF03466 LysR substrate binding domain C3D88_RS17520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS17525 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS17530 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS17535 PF02515 CoA-transferase family III C3D88_RS17540 PF03471 Transporter associated domain C3D88_RS17540 PF03741 Integral membrane protein TerC family C3D88_RS17545 PF02308 MgtC family C3D88_RS17555 PF00155 Aminotransferase class I and II C3D88_RS17555 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS17565 PF00582 Universal stress protein family C3D88_RS17570 PF00679 Elongation factor G C-terminus C3D88_RS17570 PF14492 Elongation Factor G, domain II C3D88_RS17570 PF03764 Elongation factor G, domain IV C3D88_RS17570 PF00009 Elongation factor Tu GTP binding domain C3D88_RS17570 PF03144 Elongation factor Tu domain 2 C3D88_RS17580 PF00701 Dihydrodipicolinate synthetase family C3D88_RS17585 PF03466 LysR substrate binding domain C3D88_RS17585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS17590 PF02515 CoA-transferase family III C3D88_RS17595 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS17600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS17600 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS17600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS17605 PF01575 MaoC like domain C3D88_RS17620 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C3D88_RS17620 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C3D88_RS17625 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS17630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS17630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS17630 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS17635 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS17640 PF13380 CoA binding domain C3D88_RS17640 PF13607 Succinyl-CoA ligase like flavodoxin domain C3D88_RS17650 PF00676 Dehydrogenase E1 component C3D88_RS17655 PF02780 Transketolase, C-terminal domain C3D88_RS17655 PF02779 Transketolase, pyrimidine binding domain C3D88_RS17660 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS17665 PF02817 e3 binding domain C3D88_RS17665 PF00364 Biotin-requiring enzyme C3D88_RS17665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3D88_RS17670 PF02770 Acyl-CoA dehydrogenase, middle domain C3D88_RS17670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3D88_RS17670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3D88_RS17675 PF00501 AMP-binding enzyme C3D88_RS17675 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS17685 PF13458 Periplasmic binding protein C3D88_RS17690 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS17695 PF00005 ABC transporter C3D88_RS17695 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3D88_RS17700 PF00005 ABC transporter C3D88_RS17705 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS17705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3D88_RS17720 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS17735 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS17745 PF00899 ThiF family C3D88_RS17750 PF13180 PDZ domain C3D88_RS17750 PF03572 Peptidase family S41 C3D88_RS17755 PF01551 Peptidase family M23 C3D88_RS17760 PF00300 Histidine phosphatase superfamily (branch 1) C3D88_RS17765 PF12368 Rhodanase C-terminal C3D88_RS17765 PF17773 UPF0176 acylphosphatase like domain C3D88_RS17765 PF00581 Rhodanese-like domain C3D88_RS17770 PF00462 Glutaredoxin C3D88_RS17775 PF02556 Preprotein translocase subunit SecB C3D88_RS17780 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C3D88_RS17780 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C3D88_RS17785 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS17790 PF00588 SpoU rRNA Methylase family C3D88_RS17800 PF08241 Methyltransferase domain C3D88_RS17805 PF04107 Glutamate-cysteine ligase family 2(GCS2) C3D88_RS17810 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C3D88_RS17820 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS17825 PF00005 ABC transporter C3D88_RS17835 PF01799 [2Fe-2S] binding domain C3D88_RS17835 PF00111 2Fe-2S iron-sulfur cluster binding domain C3D88_RS17840 PF00941 FAD binding domain in molybdopterin dehydrogenase C3D88_RS17840 PF03450 CO dehydrogenase flavoprotein C-terminal domain C3D88_RS17845 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C3D88_RS17845 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C3D88_RS17850 PF03480 Bacterial extracellular solute-binding protein, family 7 C3D88_RS17855 PF00355 Rieske [2Fe-2S] domain C3D88_RS17860 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS17860 PF14759 Reductase C-terminal C3D88_RS17865 PF00355 Rieske [2Fe-2S] domain C3D88_RS17865 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C3D88_RS17875 PF00857 Isochorismatase family C3D88_RS17890 PF17645 Arylmalonate decarboxylase C3D88_RS17900 PF12804 MobA-like NTP transferase domain C3D88_RS17910 PF01047 MarR family C3D88_RS17915 PF02386 Cation transport protein C3D88_RS17920 PF02080 TrkA-C domain C3D88_RS17920 PF02254 TrkA-N domain C3D88_RS17925 PF00072 Response regulator receiver domain C3D88_RS17925 PF00158 Sigma-54 interaction domain C3D88_RS17925 PF02954 Bacterial regulatory protein, Fis family C3D88_RS17930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS17930 PF00989 PAS fold C3D88_RS17930 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS17930 PF00672 HAMP domain C3D88_RS17940 PF01189 16S rRNA methyltransferase RsmB/F C3D88_RS17940 PF01029 NusB family C3D88_RS17950 PF01958 Domain of unknown function DUF108 C3D88_RS17950 PF03447 Homoserine dehydrogenase, NAD binding domain C3D88_RS17980 PF01810 LysE type translocator C3D88_RS17985 PF03466 LysR substrate binding domain C3D88_RS17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS17995 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS18005 PF00155 Aminotransferase class I and II C3D88_RS18010 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS18020 PF00682 HMGL-like C3D88_RS18025 PF02481 DNA recombination-mediator protein A C3D88_RS18025 PF17782 DprA winged helix domain C3D88_RS18030 PF01037 Lrp/AsnC ligand binding domain C3D88_RS18035 PF00266 Aminotransferase class-V C3D88_RS18040 PF01327 Polypeptide deformylase C3D88_RS18055 PF00551 Formyl transferase C3D88_RS18055 PF02911 Formyl transferase, C-terminal domain C3D88_RS18065 PF13419 Haloacid dehalogenase-like hydrolase C3D88_RS18075 PF03641 Possible lysine decarboxylase C3D88_RS18085 PF04055 Radical SAM superfamily C3D88_RS18085 PF18693 TRAM domain C3D88_RS18085 PF00919 Uncharacterized protein family UPF0004 C3D88_RS18090 PF01361 Tautomerase enzyme C3D88_RS18095 PF01266 FAD dependent oxidoreductase C3D88_RS18100 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS18105 PF07729 FCD domain C3D88_RS18105 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS18120 PF00202 Aminotransferase class-III C3D88_RS18125 PF00491 Arginase family C3D88_RS18135 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS18140 PF02627 Carboxymuconolactone decarboxylase family C3D88_RS18145 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS18150 PF09339 IclR helix-turn-helix domain C3D88_RS18150 PF01614 Bacterial transcriptional regulator C3D88_RS18155 PF00501 AMP-binding enzyme C3D88_RS18155 PF13193 AMP-binding enzyme C-terminal domain C3D88_RS18160 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS18170 PF12951 Passenger-associated-transport-repeat C3D88_RS18170 PF12951 Passenger-associated-transport-repeat C3D88_RS18200 PF01168 Alanine racemase, N-terminal domain C3D88_RS18200 PF14031 Putative serine dehydratase domain C3D88_RS18205 PF07411 Domain of unknown function (DUF1508) C3D88_RS18210 PF01145 SPFH domain / Band 7 family C3D88_RS18220 PF01042 Endoribonuclease L-PSP C3D88_RS18270 PF03837 RecT family C3D88_RS18305 PF00589 Phage integrase family C3D88_RS18325 PF03466 LysR substrate binding domain C3D88_RS18325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS18340 PF14849 YidC periplasmic domain C3D88_RS18340 PF02096 60Kd inner membrane protein C3D88_RS18345 PF01809 Putative membrane protein insertion efficiency factor C3D88_RS18350 PF00825 Ribonuclease P C3D88_RS18355 PF00468 Ribosomal protein L34 C3D88_RS18360 PF00308 Bacterial dnaA protein C3D88_RS18360 PF08299 Bacterial dnaA protein helix-turn-helix C3D88_RS18360 PF11638 DnaA N-terminal domain C3D88_RS18365 PF00712 DNA polymerase III beta subunit, N-terminal domain C3D88_RS18365 PF02767 DNA polymerase III beta subunit, central domain C3D88_RS18365 PF02768 DNA polymerase III beta subunit, C-terminal domain C3D88_RS18370 PF00986 DNA gyrase B subunit, carboxyl terminus C3D88_RS18370 PF01751 Toprim domain C3D88_RS18370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS18370 PF18053 DNA gyrase B subunit insert domain C3D88_RS18370 PF00204 DNA gyrase B C3D88_RS18375 PF09339 IclR helix-turn-helix domain C3D88_RS18375 PF01614 Bacterial transcriptional regulator C3D88_RS18380 PF01425 Amidase C3D88_RS18385 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS18395 PF01070 FMN-dependent dehydrogenase C3D88_RS18420 PF09278 MerR, DNA binding C3D88_RS18420 PF00376 MerR family regulatory protein C3D88_RS18445 PF02803 Thiolase, C-terminal domain C3D88_RS18445 PF00108 Thiolase, N-terminal domain C3D88_RS18450 PF01039 Carboxyl transferase domain C3D88_RS18455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3D88_RS18455 PF00364 Biotin-requiring enzyme C3D88_RS18455 PF00289 Biotin carboxylase, N-terminal domain C3D88_RS18455 PF02785 Biotin carboxylase C-terminal domain C3D88_RS18465 PF00202 Aminotransferase class-III C3D88_RS18470 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS18475 PF01168 Alanine racemase, N-terminal domain C3D88_RS18475 PF14031 Putative serine dehydratase domain C3D88_RS18480 PF16868 NMT1-like family C3D88_RS18490 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS18490 PF00593 TonB dependent receptor C3D88_RS18495 PF04361 Protein of unknown function (DUF494) C3D88_RS18510 PF01131 DNA topoisomerase C3D88_RS18510 PF01751 Toprim domain C3D88_RS18520 PF00005 ABC transporter C3D88_RS18525 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS18535 PF00171 Aldehyde dehydrogenase family C3D88_RS18545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3D88_RS18545 PF00205 Thiamine pyrophosphate enzyme, central domain C3D88_RS18545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3D88_RS18550 PF01037 Lrp/AsnC ligand binding domain C3D88_RS18555 PF01062 Bestrophin, RFP-TM, chloride channel C3D88_RS18565 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C3D88_RS18580 PF02574 Homocysteine S-methyltransferase C3D88_RS18580 PF02607 B12 binding domain C3D88_RS18580 PF02965 Vitamin B12 dependent methionine synthase, activation domain C3D88_RS18580 PF02310 B12 binding domain C3D88_RS18580 PF00809 Pterin binding enzyme C3D88_RS18585 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS18585 PF00593 TonB dependent receptor C3D88_RS18590 PF01497 Periplasmic binding protein C3D88_RS18595 PF05690 Thiazole biosynthesis protein ThiG C3D88_RS18600 PF08543 Phosphomethylpyrimidine kinase C3D88_RS18615 PF02321 Outer membrane efflux protein C3D88_RS18620 PF01467 Cytidylyltransferase-like C3D88_RS18630 PF01594 AI-2E family transporter C3D88_RS18640 PF02254 TrkA-N domain C3D88_RS18640 PF07885 Ion channel C3D88_RS18655 PF00164 Ribosomal protein S12/S23 C3D88_RS18660 PF00177 Ribosomal protein S7p/S5e C3D88_RS18665 PF03764 Elongation factor G, domain IV C3D88_RS18665 PF00679 Elongation factor G C-terminus C3D88_RS18665 PF03144 Elongation factor Tu domain 2 C3D88_RS18665 PF00009 Elongation factor Tu GTP binding domain C3D88_RS18665 PF14492 Elongation Factor G, domain II C3D88_RS18670 PF03144 Elongation factor Tu domain 2 C3D88_RS18670 PF03143 Elongation factor Tu C-terminal domain C3D88_RS18670 PF00009 Elongation factor Tu GTP binding domain C3D88_RS18675 PF00338 Ribosomal protein S10p/S20e C3D88_RS18680 PF00297 Ribosomal protein L3 C3D88_RS18685 PF00573 Ribosomal protein L4/L1 family C3D88_RS18690 PF00276 Ribosomal protein L23 C3D88_RS18695 PF00181 Ribosomal Proteins L2, RNA binding domain C3D88_RS18695 PF03947 Ribosomal Proteins L2, C-terminal domain C3D88_RS18700 PF00203 Ribosomal protein S19 C3D88_RS18705 PF00237 Ribosomal protein L22p/L17e C3D88_RS18710 PF00189 Ribosomal protein S3, C-terminal domain C3D88_RS18710 PF07650 KH domain C3D88_RS18715 PF00252 Ribosomal protein L16p/L10e C3D88_RS18720 PF00831 Ribosomal L29 protein C3D88_RS18725 PF00366 Ribosomal protein S17 C3D88_RS18735 PF00171 Aldehyde dehydrogenase family C3D88_RS18745 PF00238 Ribosomal protein L14p/L23e C3D88_RS18750 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C3D88_RS18755 PF00673 ribosomal L5P family C-terminus C3D88_RS18755 PF00281 Ribosomal protein L5 C3D88_RS18760 PF00253 Ribosomal protein S14p/S29e C3D88_RS18765 PF00410 Ribosomal protein S8 C3D88_RS18770 PF00347 Ribosomal protein L6 C3D88_RS18775 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C3D88_RS18780 PF00333 Ribosomal protein S5, N-terminal domain C3D88_RS18780 PF03719 Ribosomal protein S5, C-terminal domain C3D88_RS18785 PF00327 Ribosomal protein L30p/L7e C3D88_RS18790 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C3D88_RS18795 PF00344 SecY translocase C3D88_RS18800 PF01176 Translation initiation factor 1A / IF-1 C3D88_RS18805 PF00444 Ribosomal protein L36 C3D88_RS18810 PF00416 Ribosomal protein S13/S18 C3D88_RS18815 PF00411 Ribosomal protein S11 C3D88_RS18820 PF01479 S4 domain C3D88_RS18820 PF00163 Ribosomal protein S4/S9 N-terminal domain C3D88_RS18825 PF01000 RNA polymerase Rpb3/RpoA insert domain C3D88_RS18825 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C3D88_RS18825 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C3D88_RS18830 PF01196 Ribosomal protein L17 C3D88_RS18835 PF01230 HIT domain C3D88_RS18840 PF03091 CutA1 divalent ion tolerance protein C3D88_RS18845 PF02683 Cytochrome C biogenesis protein transmembrane region C3D88_RS18845 PF11412 Disulphide bond corrector protein DsbC C3D88_RS18850 PF00892 EamA-like transporter family C3D88_RS18855 PF00490 Delta-aminolevulinic acid dehydratase C3D88_RS18860 PF01926 50S ribosome-binding GTPase C3D88_RS18865 PF00034 Cytochrome c C3D88_RS18870 PF05140 ResB-like family C3D88_RS18875 PF01578 Cytochrome C assembly protein C3D88_RS18880 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C3D88_RS18880 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C3D88_RS18885 PF13627 Prokaryotic lipoprotein-attachment site C3D88_RS18890 PF01491 Frataxin-like domain C3D88_RS18895 PF00912 Transglycosylase C3D88_RS18895 PF17092 Penicillin-binding protein OB-like domain C3D88_RS18895 PF00905 Penicillin binding protein transpeptidase domain C3D88_RS18900 PF01202 Shikimate kinase C3D88_RS18905 PF01761 3-dehydroquinate synthase C3D88_RS18910 PF13286 Phosphohydrolase-associated domain C3D88_RS18910 PF01966 HD domain C3D88_RS18915 PF13417 Glutathione S-transferase, N-terminal domain C3D88_RS18915 PF00043 Glutathione S-transferase, C-terminal domain C3D88_RS18920 PF17755 UvrA DNA-binding domain C3D88_RS18920 PF17760 UvrA interaction domain C3D88_RS18925 PF07690 Major Facilitator Superfamily C3D88_RS18930 PF00436 Single-strand binding protein family C3D88_RS18935 PF00593 TonB dependent receptor C3D88_RS18935 PF07715 TonB-dependent Receptor Plug Domain C3D88_RS18945 PF03328 HpcH/HpaI aldolase/citrate lyase family C3D88_RS18955 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS18965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS18965 PF03466 LysR substrate binding domain C3D88_RS18970 PF01979 Amidohydrolase family C3D88_RS18975 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS18980 PF13439 Glycosyltransferase Family 4 C3D88_RS18980 PF00534 Glycosyl transferases group 1 C3D88_RS18990 PF03466 LysR substrate binding domain C3D88_RS18990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS19000 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS19005 PF00005 ABC transporter C3D88_RS19025 PF01274 Malate synthase C3D88_RS19045 PF01040 UbiA prenyltransferase family C3D88_RS19050 PF00155 Aminotransferase class I and II C3D88_RS19055 PF13185 GAF domain C3D88_RS19060 PF00701 Dihydrodipicolinate synthetase family C3D88_RS19075 PF01476 LysM domain C3D88_RS19075 PF04972 BON domain C3D88_RS19080 PF02597 ThiS family C3D88_RS19080 PF05690 Thiazole biosynthesis protein ThiG C3D88_RS19085 PF00561 alpha/beta hydrolase fold C3D88_RS19090 PF02390 Putative methyltransferase C3D88_RS19105 PF00682 HMGL-like C3D88_RS19110 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS19130 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS19130 PF07702 UTRA domain C3D88_RS19135 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS19145 PF07702 UTRA domain C3D88_RS19145 PF00392 Bacterial regulatory proteins, gntR family C3D88_RS19150 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS19160 PF00005 ABC transporter C3D88_RS19165 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS19170 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS19175 PF08659 KR domain C3D88_RS19175 PF08990 Erythronolide synthase docking C3D88_RS19175 PF02801 Beta-ketoacyl synthase, C-terminal domain C3D88_RS19175 PF14765 Polyketide synthase dehydratase C3D88_RS19175 PF16197 Ketoacyl-synthetase C-terminal extension C3D88_RS19175 PF00698 Acyl transferase domain C3D88_RS19175 PF00109 Beta-ketoacyl synthase, N-terminal domain C3D88_RS19175 PF00550 Phosphopantetheine attachment site C3D88_RS19175 PF08240 Alcohol dehydrogenase GroES-like domain C3D88_RS19180 PF02515 CoA-transferase family III C3D88_RS19185 PF00440 Bacterial regulatory proteins, tetR family C3D88_RS19190 PF00293 NUDIX domain C3D88_RS19190 PF09297 NADH pyrophosphatase zinc ribbon domain C3D88_RS19195 PF00111 2Fe-2S iron-sulfur cluster binding domain C3D88_RS19195 PF00970 Oxidoreductase FAD-binding domain C3D88_RS19195 PF00175 Oxidoreductase NAD-binding domain C3D88_RS19200 PF01425 Amidase C3D88_RS19210 PF03466 LysR substrate binding domain C3D88_RS19210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3D88_RS19215 PF13458 Periplasmic binding protein C3D88_RS19225 PF00005 ABC transporter C3D88_RS19235 PF02653 Branched-chain amino acid transport system / permease component C3D88_RS19245 PF00355 Rieske [2Fe-2S] domain C3D88_RS19260 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C3D88_RS19260 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C3D88_RS19275 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C3D88_RS19275 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C3D88_RS19275 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C3D88_RS19280 PF07690 Major Facilitator Superfamily C3D88_RS19285 PF12804 MobA-like NTP transferase domain C3D88_RS19285 PF14602 Hexapeptide repeat of succinyl-transferase C3D88_RS19285 PF00132 Bacterial transferase hexapeptide (six repeats) C3D88_RS19305 PF02630 SCO1/SenC C3D88_RS19310 PF01040 UbiA prenyltransferase family C3D88_RS19315 PF02628 Cytochrome oxidase assembly protein C3D88_RS19335 PF00510 Cytochrome c oxidase subunit III C3D88_RS19350 PF00115 Cytochrome C and Quinol oxidase polypeptide I C3D88_RS19355 PF02790 Cytochrome C oxidase subunit II, transmembrane domain C3D88_RS19355 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C3D88_RS19365 PF00999 Sodium/hydrogen exchanger family C3D88_RS19370 PF00149 Calcineurin-like phosphoesterase C3D88_RS19375 PF04545 Sigma-70, region 4 C3D88_RS19375 PF00140 Sigma-70 factor, region 1.2 C3D88_RS19375 PF04542 Sigma-70 region 2 C3D88_RS19385 PF00756 Putative esterase C3D88_RS19390 PF08240 Alcohol dehydrogenase GroES-like domain C3D88_RS19390 PF00107 Zinc-binding dehydrogenase C3D88_RS19400 PF00310 Glutamine amidotransferases class-II C3D88_RS19400 PF04898 Glutamate synthase central domain C3D88_RS19400 PF01645 Conserved region in glutamate synthase C3D88_RS19400 PF01493 GXGXG motif C3D88_RS19405 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3D88_RS19405 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C3D88_RS19410 PF03922 OmpW family C3D88_RS19415 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS19420 PF00005 ABC transporter C3D88_RS19425 PF02405 Permease MlaE C3D88_RS19430 PF02470 MlaD protein C3D88_RS19435 PF04333 MlaA lipoprotein C3D88_RS19450 PF01061 ABC-2 type transporter C3D88_RS19460 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3D88_RS19465 PF01634 ATP phosphoribosyltransferase C3D88_RS19470 PF00815 Histidinol dehydrogenase C3D88_RS19475 PF00155 Aminotransferase class I and II C3D88_RS19480 PF00475 Imidazoleglycerol-phosphate dehydratase C3D88_RS19485 PF00117 Glutamine amidotransferase class-I C3D88_RS19490 PF00977 Histidine biosynthesis protein C3D88_RS19495 PF00977 Histidine biosynthesis protein C3D88_RS19500 PF01502 Phosphoribosyl-AMP cyclohydrolase C3D88_RS19505 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase C3D88_RS19510 PF01230 HIT domain C3D88_RS19515 PF02416 mttA/Hcf106 family C3D88_RS19520 PF02416 mttA/Hcf106 family C3D88_RS19525 PF00902 Sec-independent protein translocase protein (TatC) C3D88_RS19535 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS19540 PF02917 Pertussis toxin, subunit 1 C3D88_RS19545 PF03440 Aerolysin/Pertussis toxin (APT) domain C3D88_RS19545 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain C3D88_RS19550 PF09275 Pertussis toxin S4 subunit C3D88_RS19555 PF09276 Pertussis toxin S5 subunit C3D88_RS19560 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain C3D88_RS19560 PF03440 Aerolysin/Pertussis toxin (APT) domain C3D88_RS19565 PF04956 TrbC/VIRB2 family C3D88_RS19570 PF05101 Type IV secretory pathway, VirB3-like protein C3D88_RS19575 PF03135 CagE, TrbE, VirB family, component of type IV transporter system C3D88_RS19580 PF04610 TrbL/VirB6 plasmid conjugal transfer protein C3D88_RS19590 PF04335 VirB8 protein C3D88_RS19595 PF03524 Conjugal transfer protein C3D88_RS19600 PF03743 Bacterial conjugation TrbI-like protein C3D88_RS19605 PF00437 Type II/IV secretion system protein C3D88_RS19615 PF00892 EamA-like transporter family C3D88_RS19635 PF10396 GTP-binding protein TrmE N-terminus C3D88_RS19635 PF12631 MnmE helical domain C3D88_RS19635 PF01926 50S ribosome-binding GTPase C3D88_RS19640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS19645 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS19650 PF12911 N-terminal TM domain of oligopeptide transport permease C C3D88_RS19650 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS19665 PF01960 ArgJ family C3D88_RS19675 PF00293 NUDIX domain C3D88_RS19700 PF02321 Outer membrane efflux protein C3D88_RS19705 PF00873 AcrB/AcrD/AcrF family C3D88_RS19710 PF00873 AcrB/AcrD/AcrF family C3D88_RS19715 PF13533 Biotin-lipoyl like C3D88_RS19720 PF07072 Cell division protein C3D88_RS19725 PF01121 Dephospho-CoA kinase C3D88_RS19730 PF01478 Type IV leader peptidase family C3D88_RS19730 PF06750 Bacterial Peptidase A24 N-terminal domain C3D88_RS19745 PF02569 Pantoate-beta-alanine ligase C3D88_RS19750 PF02616 Segregation and condensation protein ScpA C3D88_RS19760 PF07690 Major Facilitator Superfamily C3D88_RS19765 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3D88_RS19765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3D88_RS19775 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS19780 PF00005 ABC transporter C3D88_RS19785 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS19790 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS19795 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3D88_RS19800 PF00005 ABC transporter C3D88_RS19805 PF18075 FtsX extracellular domain C3D88_RS19810 PF03975 CheD chemotactic sensory transduction C3D88_RS19820 PF10576 Iron-sulfur binding domain of endonuclease III C3D88_RS19820 PF00633 Helix-hairpin-helix motif C3D88_RS19820 PF00730 HhH-GPD superfamily base excision DNA repair protein C3D88_RS19820 PF14815 NUDIX domain C3D88_RS19830 PF08241 Methyltransferase domain C3D88_RS19840 PF02515 CoA-transferase family III C3D88_RS19845 PF02515 CoA-transferase family III C3D88_RS19855 PF03401 Tripartite tricarboxylate transporter family receptor C3D88_RS19860 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS19865 PF00881 Nitroreductase family C3D88_RS19875 PF00682 HMGL-like C3D88_RS19880 PF00378 Enoyl-CoA hydratase/isomerase C3D88_RS19885 PF02515 CoA-transferase family III C3D88_RS19900 PF00199 Catalase C3D88_RS19900 PF06628 Catalase-related immune-responsive C3D88_RS19905 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS19910 PF00005 ABC transporter C3D88_RS19920 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C3D88_RS19925 PF01546 Peptidase family M20/M25/M40 C3D88_RS19925 PF07687 Peptidase dimerisation domain C3D88_RS19930 PF00005 ABC transporter C3D88_RS19930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS19935 PF00005 ABC transporter C3D88_RS19935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3D88_RS19940 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS19940 PF12911 N-terminal TM domain of oligopeptide transport permease C C3D88_RS19945 PF00528 Binding-protein-dependent transport system inner membrane component C3D88_RS19950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3D88_RS19955 PF10396 GTP-binding protein TrmE N-terminus C3D88_RS19955 PF12631 MnmE helical domain C3D88_RS19955 PF01926 50S ribosome-binding GTPase C3D88_RS19965 PF00486 Transcriptional regulatory protein, C terminal C3D88_RS19965 PF00072 Response regulator receiver domain C3D88_RS19970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3D88_RS19970 PF00512 His Kinase A (phospho-acceptor) domain C3D88_RS19985 PF01970 Tripartite tricarboxylate transporter TctA family C3D88_RS19990 PF00155 Aminotransferase class I and II C3D88_RS19995 PF00313 'Cold-shock' DNA-binding domain