locus-tag	class	description
C3D93_RS00005	COG0445	tRNA wobble uridine modification
C3D93_RS00010	COG0357	Ribosomal RNA small subunit methyltransferase G
C3D93_RS00015	COG1192	Involved in chromosome partitioning
C3D93_RS00025	COG1475	DNA binding
C3D93_RS00050	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
C3D93_RS00060	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C3D93_RS00070	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
C3D93_RS00075	COG0081	regulation of translation
C3D93_RS00080	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
C3D93_RS00085	COG0222	ribosome binding
C3D93_RS00090	COG0085	RNA polymerase activity
C3D93_RS00095	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
C3D93_RS00135	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS00160	COG1024	Enoyl-CoA hydratase
C3D93_RS00180	COG0752	glycyl-tRNA synthetase alpha subunit
C3D93_RS00185	COG0751	glycine-tRNA ligase activity
C3D93_RS00190	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
C3D93_RS00195	COG0204	Acyl-transferase
C3D93_RS00210	COG0242	peptide deformylase activity
C3D93_RS00250	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3D93_RS00255	COG2813	Specifically methylates the guanine in position
C3D93_RS00255	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3D93_RS00270	COG2223	nitrite transmembrane transporter activity
C3D93_RS00280	COG1794	racemase activity, acting on amino acids and derivatives
C3D93_RS00285	COG1126	abc transporter atp-binding protein
C3D93_RS00290	COG0765	amino acid transport
C3D93_RS00295	COG0765	amino acid transport
C3D93_RS00300	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS00365	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C3D93_RS00395	COG0326	Molecular chaperone. Has ATPase activity
C3D93_RS00400	COG0625	glutathione transferase activity
C3D93_RS00415	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3D93_RS00420	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
C3D93_RS00450	COG0438	transferase activity, transferring glycosyl groups
C3D93_RS00455	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
C3D93_RS00460	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
C3D93_RS00490	COG0859	PFAM glycosyl transferase family 9
C3D93_RS00505	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
C3D93_RS00515	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
C3D93_RS00520	COG1127	ABC transporter
C3D93_RS00540	COG1686	Belongs to the peptidase S11 family
C3D93_RS00550	COG2921	Belongs to the UPF0250 family
C3D93_RS00555	COG0321	lipoyl(octanoyl) transferase activity
C3D93_RS00560	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
C3D93_RS00595	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3D93_RS00605	COG0018	arginyl-trna synthetase
C3D93_RS00625	COG0395	ABC-type sugar transport system, permease component
C3D93_RS00630	COG1175	transmembrane transport
C3D93_RS00635	COG1653	transport
C3D93_RS00640	COG3842	ATPase activity
C3D93_RS00645	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
C3D93_RS00655	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
C3D93_RS00675	COG1609	Transcriptional regulator
C3D93_RS00685	COG0154	amidase activity
C3D93_RS00690	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C3D93_RS00700	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
C3D93_RS00710	COG0583	DNA-binding transcription factor activity
C3D93_RS00730	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C3D93_RS00745	COG1802	Transcriptional regulator
C3D93_RS00760	COG1024	Enoyl-CoA hydratase
C3D93_RS00770	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS00785	COG1984	allophanate hydrolase subunit 2
C3D93_RS00790	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
C3D93_RS00800	COG0583	DNA-binding transcription factor activity
C3D93_RS00805	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3D93_RS00815	COG5002	protein histidine kinase activity
C3D93_RS00825	COG5002	protein histidine kinase activity
C3D93_RS00830	COG0745	RESPONSE REGULATOR receiver
C3D93_RS00835	COG2226	methyltransferase
C3D93_RS00850	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
C3D93_RS00870	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
C3D93_RS00880	COG0513	Belongs to the DEAD box helicase family
C3D93_RS00885	COG1280	lysine exporter protein (LysE YggA)
C3D93_RS00890	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
C3D93_RS00930	COG1054	Belongs to the UPF0176 family
C3D93_RS00935	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3D93_RS00935	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3D93_RS00945	COG0489	protein tyrosine kinase activity
C3D93_RS00960	COG0717	Belongs to the dCTP deaminase family
C3D93_RS00990	COG2081	HI0933 family
C3D93_RS01000	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
C3D93_RS01010	COG0404	The glycine cleavage system catalyzes the degradation of glycine
C3D93_RS01015	COG0509	glycine decarboxylation via glycine cleavage system
C3D93_RS01020	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
C3D93_RS01020	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
C3D93_RS01060	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3D93_RS01075	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C3D93_RS01085	COG1414	Transcriptional regulator
C3D93_RS01090	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS01095	COG2031	fatty acid transporter
C3D93_RS01100	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3D93_RS01110	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
C3D93_RS01115	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
C3D93_RS01125	COG4257	antibiotic catabolic process
C3D93_RS01150	COG1012	belongs to the aldehyde dehydrogenase family
C3D93_RS01155	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
C3D93_RS01160	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C3D93_RS01185	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS01195	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3D93_RS01205	COG2188	Transcriptional regulator
C3D93_RS01210	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C3D93_RS01235	COG0617	tRNA 3'-terminal CCA addition
C3D93_RS01250	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
C3D93_RS01255	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
C3D93_RS01260	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
C3D93_RS01265	COG0586	Pfam SNARE associated Golgi protein
C3D93_RS01270	COG0860	N-Acetylmuramoyl-L-alanine amidase
C3D93_RS01275	COG0802	atpase or kinase
C3D93_RS01280	COG0114	fumarate hydratase activity
C3D93_RS01290	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS01300	COG0405	Gamma-glutamyltransferase
C3D93_RS01305	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS01350	COG1294	oxidase, subunit
C3D93_RS01360	COG4988	ABC transporter
C3D93_RS01365	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
C3D93_RS01415	COG2969	positive regulation of protein catabolic process
C3D93_RS01420	COG0625	glutathione transferase activity
C3D93_RS01425	COG2857	Cytochrome c1
C3D93_RS01430	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
C3D93_RS01435	COG0723	plastoquinol--plastocyanin reductase activity
C3D93_RS01440	COG1970	mechanosensitive ion channel activity
C3D93_RS01445	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
C3D93_RS01460	COG2808	Putative FMN-binding domain
C3D93_RS01465	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3D93_RS01470	COG0747	negative chemotaxis
C3D93_RS01475	COG0657	acetylesterase activity
C3D93_RS01485	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C3D93_RS01490	COG2207	Transcriptional regulator
C3D93_RS01495	COG0129	dihydroxy-acid dehydratase activity
C3D93_RS01500	COG2814	Major facilitator Superfamily
C3D93_RS01505	COG0583	DNA-binding transcription factor activity
C3D93_RS01515	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
C3D93_RS01585	COG1024	Enoyl-CoA hydratase
C3D93_RS01590	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS01615	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
C3D93_RS01620	COG0352	thiamine-phosphate diphosphorylase activity
C3D93_RS01635	COG1678	Uncharacterized ACR, COG1678
C3D93_RS01640	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
C3D93_RS01645	COG0540	Belongs to the ATCase OTCase family
C3D93_RS01660	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C3D93_RS01670	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3D93_RS01705	COG1234	tRNA 3'-trailer cleavage
C3D93_RS01725	COG3064	Membrane
C3D93_RS01755	COG1683	Conserved Protein
C3D93_RS01760	COG1120	ATPase activity
C3D93_RS01765	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3D93_RS01770	COG4558	Periplasmic binding protein
C3D93_RS01775	COG3720	iron ion transport
C3D93_RS01785	COG3712	iron ion homeostasis
C3D93_RS01790	COG1595	DNA-templated transcription, initiation
C3D93_RS01825	COG1802	Transcriptional regulator
C3D93_RS01835	COG3069	C4-dicarboxylate transmembrane transporter activity
C3D93_RS01845	COG1012	belongs to the aldehyde dehydrogenase family
C3D93_RS01880	COG2860	membrane
C3D93_RS01885	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C3D93_RS01890	COG0708	Exodeoxyribonuclease III
C3D93_RS01895	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
C3D93_RS01900	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
C3D93_RS01905	COG0154	amidase activity
C3D93_RS01910	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
C3D93_RS01915	COG1077	Cell shape determining protein MreB Mrl
C3D93_RS01920	COG1792	Involved in formation and maintenance of cell shape
C3D93_RS01930	COG0768	penicillin binding
C3D93_RS01935	COG0772	Belongs to the SEDS family
C3D93_RS01940	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
C3D93_RS01945	COG0471	metal ion transport
C3D93_RS01950	COG1309	transcriptional regulator
C3D93_RS01960	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C3D93_RS01975	COG2823	Periplasmic or secreted lipoprotein
C3D93_RS01980	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
C3D93_RS01995	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
C3D93_RS02015	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS02025	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS02045	COG0492	ferredoxin-NADP+ reductase activity
C3D93_RS02055	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS02060	COG1024	Enoyl-CoA hydratase
C3D93_RS02060	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3D93_RS02065	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS02070	COG0028	Belongs to the TPP enzyme family
C3D93_RS02095	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS02110	COG0697	spore germination
C3D93_RS02140	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
C3D93_RS02145	COG0463	Glycosyl transferase, family 2
C3D93_RS02160	COG0786	glutamate:sodium symporter activity
C3D93_RS02170	COG2031	fatty acid transporter
C3D93_RS02185	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C3D93_RS02215	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS02225	COG0277	FAD linked oxidase domain protein
C3D93_RS02230	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS02235	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS02245	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C3D93_RS02260	COG2072	flavoprotein involved in K transport
C3D93_RS02265	COG0604	alcohol dehydrogenase
C3D93_RS02280	COG1024	Enoyl-CoA hydratase
C3D93_RS02300	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
C3D93_RS02305	COG1522	sequence-specific DNA binding
C3D93_RS02310	COG0183	Belongs to the thiolase family
C3D93_RS02320	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS02365	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
C3D93_RS02370	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
C3D93_RS02375	COG2890	protein-(glutamine-N5) methyltransferase activity
C3D93_RS02380	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
C3D93_RS02390	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS02425	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
C3D93_RS02430	COG1660	Displays ATPase and GTPase activities
C3D93_RS02440	COG1529	Aldehyde oxidase and xanthine dehydrogenase
C3D93_RS02440	COG2010	Cytochrome c
C3D93_RS02445	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
C3D93_RS02460	COG1137	ATPase activity
C3D93_RS02475	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
C3D93_RS02485	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
C3D93_RS02520	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
C3D93_RS02525	COG3568	Endonuclease Exonuclease Phosphatase
C3D93_RS02530	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3D93_RS02560	COG0154	amidase activity
C3D93_RS02570	COG1414	Transcriptional regulator
C3D93_RS02580	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3D93_RS02580	COG1024	Enoyl-CoA hydratase
C3D93_RS02590	COG2132	Multicopper oxidase
C3D93_RS02645	COG1024	Enoyl-CoA hydratase
C3D93_RS02650	COG1024	Enoyl-CoA hydratase
C3D93_RS02655	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
C3D93_RS02675	COG0601	transmembrane transport
C3D93_RS02680	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS02685	COG4172	Belongs to the ABC transporter superfamily
C3D93_RS02695	COG2195	Cleaves the N-terminal amino acid of tripeptides
C3D93_RS02705	COG0210	DNA helicase
C3D93_RS02710	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
C3D93_RS02715	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
C3D93_RS02725	COG0355	proton-transporting ATP synthase activity, rotational mechanism
C3D93_RS02730	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
C3D93_RS02735	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
C3D93_RS02740	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
C3D93_RS02745	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
C3D93_RS02750	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
C3D93_RS02760	COG0356	it plays a direct role in the translocation of protons across the membrane
C3D93_RS02785	COG1024	Enoyl-CoA hydratase
C3D93_RS02790	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3D93_RS02795	COG3634	alkyl hydroperoxide reductase activity
C3D93_RS02805	COG0037	tRNA processing
C3D93_RS02815	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3D93_RS02820	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3D93_RS02825	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3D93_RS02830	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
C3D93_RS02835	COG2967	ApaG domain
C3D93_RS02840	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C3D93_RS02845	COG0546	phosphoglycolate phosphatase activity
C3D93_RS02855	COG0512	Glutamine amidotransferase of anthranilate synthase
C3D93_RS02860	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C3D93_RS02865	COG0134	indole-3-glycerol-phosphate synthase activity
C3D93_RS02890	COG0583	DNA-binding transcription factor activity
C3D93_RS02905	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3D93_RS02910	COG0259	pyridoxamine-phosphate oxidase activity
C3D93_RS02920	COG2814	Major facilitator Superfamily
C3D93_RS02925	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
C3D93_RS02930	COG2188	Transcriptional regulator
C3D93_RS02935	COG0318	PFAM AMP-dependent synthetase and ligase
C3D93_RS02955	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3D93_RS02965	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
C3D93_RS02980	COG1215	transferase activity, transferring glycosyl groups
C3D93_RS02990	COG0601	transmembrane transport
C3D93_RS03025	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
C3D93_RS03030	COG2894	cell division
C3D93_RS03035	COG0850	regulation of cytokinetic process
C3D93_RS03040	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C3D93_RS03045	COG1271	oxidase subunit
C3D93_RS03080	COG2979	Protein of unknown function (DUF533)
C3D93_RS03100	COG0741	lytic transglycosylase activity
C3D93_RS03100	COG1388	LysM domain
C3D93_RS03105	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3D93_RS03110	COG2226	methyltransferase
C3D93_RS03115	COG0328	RNA-DNA hybrid ribonuclease activity
C3D93_RS03165	COG2030	dehydratase
C3D93_RS03215	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS03230	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS03250	COG2718	Belongs to the UPF0229 family
C3D93_RS03255	COG2719	SpoVR family
C3D93_RS03280	COG2188	Transcriptional regulator
C3D93_RS03310	COG0829	nickel cation binding
C3D93_RS03315	COG0831	urea catabolic process
C3D93_RS03325	COG0832	Belongs to the urease beta subunit family
C3D93_RS03330	COG0804	urea catabolic process
C3D93_RS03340	COG0830	nickel cation binding
C3D93_RS03345	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
C3D93_RS03365	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS03370	COG0601	transmembrane transport
C3D93_RS03375	COG0747	negative chemotaxis
C3D93_RS03385	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C3D93_RS03390	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3D93_RS03400	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
C3D93_RS03410	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
C3D93_RS03415	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
C3D93_RS03420	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
C3D93_RS03435	COG0438	transferase activity, transferring glycosyl groups
C3D93_RS03450	COG0438	transferase activity, transferring glycosyl groups
C3D93_RS03455	COG0438	transferase activity, transferring glycosyl groups
C3D93_RS03460	COG0166	Belongs to the GPI family
C3D93_RS03475	COG0277	FAD linked oxidase domain protein
C3D93_RS03480	COG0745	RESPONSE REGULATOR receiver
C3D93_RS03485	COG0642	Histidine kinase
C3D93_RS03490	COG1368	sulfuric ester hydrolase activity
C3D93_RS03500	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
C3D93_RS03525	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
C3D93_RS03535	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
C3D93_RS03540	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
C3D93_RS03550	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
C3D93_RS03555	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
C3D93_RS03560	COG0193	aminoacyl-tRNA hydrolase activity
C3D93_RS03570	COG0012	GTP binding
C3D93_RS03575	COG0582	viral genome integration into host DNA
C3D93_RS03610	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
C3D93_RS03675	COG0745	RESPONSE REGULATOR receiver
C3D93_RS03690	COG1309	transcriptional regulator
C3D93_RS03720	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3D93_RS03730	COG0405	Gamma-glutamyltransferase
C3D93_RS03805	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
C3D93_RS03810	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3D93_RS03820	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
C3D93_RS03825	COG0513	Belongs to the DEAD box helicase family
C3D93_RS03835	COG0617	tRNA 3'-terminal CCA addition
C3D93_RS03850	COG0477	Major facilitator Superfamily
C3D93_RS03860	COG0583	DNA-binding transcription factor activity
C3D93_RS03875	COG1950	PFAM Membrane protein of
C3D93_RS03880	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
C3D93_RS03895	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
C3D93_RS03905	COG1560	Kdo2-lipid A biosynthetic process
C3D93_RS03910	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
C3D93_RS03920	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
C3D93_RS03930	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
C3D93_RS03940	COG0803	Belongs to the bacterial solute-binding protein 9 family
C3D93_RS03955	COG0735	belongs to the Fur family
C3D93_RS03960	COG0523	cobalamin synthesis protein
C3D93_RS03970	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
C3D93_RS03975	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
C3D93_RS03990	COG2096	Adenosyltransferase
C3D93_RS04010	COG2084	Dehydrogenase
C3D93_RS04060	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
C3D93_RS04065	COG0129	dihydroxy-acid dehydratase activity
C3D93_RS04070	COG4654	Cytochrome c, class I
C3D93_RS04075	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C3D93_RS04125	COG1473	amidohydrolase
C3D93_RS04130	COG0418	dihydroorotase activity
C3D93_RS04135	COG0488	(ABC) transporter
C3D93_RS04145	COG2001	Belongs to the MraZ family
C3D93_RS04150	COG0275	rRNA processing
C3D93_RS04155	COG3116	cell division
C3D93_RS04165	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C3D93_RS04170	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
C3D93_RS04175	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
C3D93_RS04185	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
C3D93_RS04190	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C3D93_RS04195	COG1181	Belongs to the D-alanine--D-alanine ligase family
C3D93_RS04200	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
C3D93_RS04210	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
C3D93_RS04215	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
C3D93_RS04225	COG0739	heme binding
C3D93_RS04230	COG0653	protein targeting
C3D93_RS04250	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS04255	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3D93_RS04260	COG1522	sequence-specific DNA binding
C3D93_RS04280	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
C3D93_RS04290	COG0557	exoribonuclease II activity
C3D93_RS04295	COG3150	esterase
C3D93_RS04300	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C3D93_RS04305	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3D93_RS04310	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
C3D93_RS04315	COG0511	ligase activity, forming carbon-carbon bonds
C3D93_RS04320	COG0439	Biotin carboxylase
C3D93_RS04335	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3D93_RS04360	COG1696	Membrane protein involved in D-alanine export
C3D93_RS04365	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
C3D93_RS04400	COG1522	sequence-specific DNA binding
C3D93_RS04415	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C3D93_RS04420	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3D93_RS04420	COG1042	CoA-binding domain protein
C3D93_RS04420	COG0045	succinate-CoA ligase (ADP-forming) activity
C3D93_RS04435	COG1802	Transcriptional regulator
C3D93_RS04440	COG3069	C4-dicarboxylate transmembrane transporter activity
C3D93_RS04445	COG0513	Belongs to the DEAD box helicase family
C3D93_RS04450	COG0346	lactoylglutathione lyase activity
C3D93_RS04455	COG1335	isochorismatase
C3D93_RS04460	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS04465	COG1116	anion transmembrane transporter activity
C3D93_RS04480	COG3028	Belongs to the UPF0307 family
C3D93_RS04485	COG0312	modulator of DNA gyrase
C3D93_RS04490	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C3D93_RS04495	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
C3D93_RS04500	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
C3D93_RS04505	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
C3D93_RS04515	COG0316	Belongs to the HesB IscA family
C3D93_RS04520	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
C3D93_RS04535	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
C3D93_RS04545	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
C3D93_RS04550	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
C3D93_RS04565	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3D93_RS04565	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3D93_RS04600	COG0583	DNA-binding transcription factor activity
C3D93_RS04605	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS04640	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
C3D93_RS04650	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C3D93_RS04655	COG1845	cytochrome c oxidase, subunit III
C3D93_RS04660	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
C3D93_RS04665	COG0640	Transcriptional regulator
C3D93_RS04685	COG3220	belongs to the UPF0276 family
C3D93_RS04730	COG1666	GTP binding
C3D93_RS04765	COG0312	modulator of DNA gyrase
C3D93_RS04770	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C3D93_RS04775	COG3210	domain, Protein
C3D93_RS04775	COG3064	Membrane
C3D93_RS04775	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
C3D93_RS04775	COG3210	domain, Protein
C3D93_RS04775	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
C3D93_RS04775	COG3064	Membrane
C3D93_RS04780	COG0277	FAD linked oxidase domain protein
C3D93_RS04785	COG0277	FAD linked oxidase domain protein
C3D93_RS04790	COG0277	FAD linked oxidase domain protein
C3D93_RS04795	COG0247	lactate metabolic process
C3D93_RS04800	COG2819	hydrolase of the alpha beta superfamily
C3D93_RS04840	COG0583	DNA-binding transcription factor activity
C3D93_RS04845	COG0482	sulfurtransferase activity
C3D93_RS04850	COG0730	response to heat
C3D93_RS04855	COG0625	glutathione transferase activity
C3D93_RS04860	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
C3D93_RS04865	COG3909	cytochrome
C3D93_RS04905	COG0154	amidase activity
C3D93_RS04910	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS04915	COG1024	Enoyl-CoA hydratase
C3D93_RS04930	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS04945	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS04950	COG1414	Transcriptional regulator
C3D93_RS04960	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3D93_RS04965	COG0251	oxidation-reduction process
C3D93_RS04970	COG0559	Belongs to the binding-protein-dependent transport system permease family
C3D93_RS05005	COG0583	DNA-binding transcription factor activity
C3D93_RS05015	COG0590	tRNA wobble adenosine to inosine editing
C3D93_RS05020	COG2807	transmembrane transport
C3D93_RS05040	COG0154	amidase activity
C3D93_RS05045	COG0307	riboflavin synthase, alpha
C3D93_RS05050	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS05055	COG1522	sequence-specific DNA binding
C3D93_RS05065	COG0318	PFAM AMP-dependent synthetase and ligase
C3D93_RS05075	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS05095	COG1063	alcohol dehydrogenase
C3D93_RS05120	COG1418	mRNA catabolic process
C3D93_RS05125	COG1448	Aminotransferase
C3D93_RS05130	COG0583	DNA-binding transcription factor activity
C3D93_RS05140	COG0477	Major facilitator Superfamily
C3D93_RS05145	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS05160	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C3D93_RS05165	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
C3D93_RS05170	COG0583	DNA-binding transcription factor activity
C3D93_RS05230	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS05235	COG1309	transcriptional regulator
C3D93_RS05245	COG2982	Protein involved in outer membrane biogenesis
C3D93_RS05250	COG2818	Glycosylase
C3D93_RS05270	COG1653	transport
C3D93_RS05285	COG3842	ATPase activity
C3D93_RS05290	COG0395	ABC-type sugar transport system, permease component
C3D93_RS05295	COG1175	transmembrane transport
C3D93_RS05315	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS05320	COG2186	Transcriptional regulator
C3D93_RS05350	COG1454	alcohol dehydrogenase
C3D93_RS05370	COG2011	ABC-type metal ion transport system permease component
C3D93_RS05375	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
C3D93_RS05380	COG1501	Belongs to the glycosyl hydrolase 31 family
C3D93_RS05405	COG0318	PFAM AMP-dependent synthetase and ligase
C3D93_RS05410	COG1473	amidohydrolase
C3D93_RS05420	COG2855	membrane
C3D93_RS05430	COG2239	Acts as a magnesium transporter
C3D93_RS05450	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS05460	COG1722	exodeoxyribonuclease VII activity
C3D93_RS05465	COG0142	geranyltranstransferase activity
C3D93_RS05470	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
C3D93_RS05475	COG1469	GTP cyclohydrolase I activity
C3D93_RS05480	COG0360	Binds together with S18 to 16S ribosomal RNA
C3D93_RS05485	COG2965	DNA replication, synthesis of RNA primer
C3D93_RS05490	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
C3D93_RS05495	COG0359	binds to the 23S rRNA
C3D93_RS05505	COG0305	Participates in initiation and elongation during chromosome replication
C3D93_RS05515	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
C3D93_RS05520	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
C3D93_RS05525	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
C3D93_RS05530	COG3737	Protein of unknown function (DUF498/DUF598)
C3D93_RS05535	COG0436	Aminotransferase
C3D93_RS05560	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
C3D93_RS05595	COG0268	Binds directly to 16S ribosomal RNA
C3D93_RS05605	COG0728	peptidoglycan biosynthetic process
C3D93_RS05615	COG0563	adenylate kinase activity
C3D93_RS05620	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
C3D93_RS05625	COG2835	tetraacyldisaccharide 4'-kinase activity
C3D93_RS05630	COG1663	tetraacyldisaccharide 4'-kinase activity
C3D93_RS05635	COG0848	biopolymer transport protein
C3D93_RS05640	COG0811	peptide transport
C3D93_RS05650	COG1570	exodeoxyribonuclease VII activity
C3D93_RS05655	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
C3D93_RS05660	COG0038	chloride channel
C3D93_RS05665	COG0183	Belongs to the thiolase family
C3D93_RS05675	COG1278	Cold shock
C3D93_RS05680	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
C3D93_RS05690	COG4953	penicillin-binding protein 1C
C3D93_RS05695	COG0542	response to heat
C3D93_RS05700	COG2995	paraquat-inducible protein a
C3D93_RS05705	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C3D93_RS05705	COG3008	intermembrane lipid transfer
C3D93_RS05715	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
C3D93_RS05715	COG0506	proline dehydrogenase activity
C3D93_RS05715	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
C3D93_RS05750	COG2271	Major facilitator Superfamily
C3D93_RS05755	COG1309	transcriptional regulator
C3D93_RS05790	COG0477	Major facilitator Superfamily
C3D93_RS05800	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C3D93_RS05805	COG1845	cytochrome c oxidase, subunit III
C3D93_RS05810	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
C3D93_RS05820	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS05840	COG0789	Transcriptional regulator
C3D93_RS05865	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
C3D93_RS05870	COG0697	spore germination
C3D93_RS05880	COG0678	peroxiredoxin activity
C3D93_RS05890	COG0412	Dienelactone hydrolase
C3D93_RS05900	COG0315	cyclic pyranopterin monophosphate synthase activity
C3D93_RS05915	COG0521	Mo-molybdopterin cofactor biosynthetic process
C3D93_RS05920	COG0303	'Molybdopterin
C3D93_RS05925	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
C3D93_RS05945	COG0165	Argininosuccinate lyase
C3D93_RS05950	COG0668	transmembrane transport
C3D93_RS05995	COG0747	negative chemotaxis
C3D93_RS06000	COG0601	transmembrane transport
C3D93_RS06015	COG1162	GTPase activity
C3D93_RS06020	COG0501	Belongs to the peptidase M48B family
C3D93_RS06025	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
C3D93_RS06035	COG3327	negative regulation of DNA-templated transcription, initiation
C3D93_RS06040	COG3396	Phenylacetate-CoA oxygenase
C3D93_RS06045	COG3460	Phenylacetate-CoA oxygenase
C3D93_RS06050	COG3396	Phenylacetate-CoA oxygenase
C3D93_RS06055	COG2151	metal-sulfur cluster biosynthetic enzyme
C3D93_RS06075	COG1012	belongs to the aldehyde dehydrogenase family
C3D93_RS06080	COG1024	Enoyl-CoA hydratase
C3D93_RS06085	COG2050	protein possibly involved in aromatic compounds catabolism
C3D93_RS06095	COG3539	Fimbrial protein
C3D93_RS06115	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C3D93_RS06120	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C3D93_RS06120	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
C3D93_RS06125	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C3D93_RS06130	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
C3D93_RS06130	COG0047	phosphoribosylformylglycinamidine synthase activity
C3D93_RS06135	COG3210	domain, Protein
C3D93_RS06135	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
C3D93_RS06135	COG3064	Membrane
C3D93_RS06165	COG0235	Class ii aldolase
C3D93_RS06170	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C3D93_RS06175	COG0720	synthase
C3D93_RS06180	COG0602	queuosine metabolic process
C3D93_RS06205	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3D93_RS06240	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS06265	COG3842	ATPase activity
C3D93_RS06275	COG0395	ABC-type sugar transport system, permease component
C3D93_RS06305	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3D93_RS06310	COG0420	3'-5' exonuclease activity
C3D93_RS06355	COG0518	GMP synthase (glutamine-hydrolyzing) activity
C3D93_RS06355	COG0519	Catalyzes the synthesis of GMP from XMP
C3D93_RS06370	COG3550	peptidyl-serine autophosphorylation
C3D93_RS06380	COG0477	Major facilitator Superfamily
C3D93_RS06395	COG1228	amidohydrolase
C3D93_RS06405	COG1116	anion transmembrane transporter activity
C3D93_RS06410	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS06445	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
C3D93_RS06465	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
C3D93_RS06495	COG2814	Major facilitator Superfamily
C3D93_RS06510	COG1280	lysine exporter protein (LysE YggA)
C3D93_RS06525	COG0747	negative chemotaxis
C3D93_RS06530	COG0601	transmembrane transport
C3D93_RS06535	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS06540	COG4172	Belongs to the ABC transporter superfamily
C3D93_RS06545	COG1609	Transcriptional regulator
C3D93_RS06575	COG0586	Pfam SNARE associated Golgi protein
C3D93_RS06590	COG0500	methyltransferase
C3D93_RS06605	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3D93_RS06615	COG0756	dUTP diphosphatase activity
C3D93_RS06625	COG0291	Belongs to the bacterial ribosomal protein bL35 family
C3D93_RS06630	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
C3D93_RS06635	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
C3D93_RS06640	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3D93_RS06640	COG0072	phenylalanine-tRNA ligase activity
C3D93_RS06645	COG0776	regulation of translation
C3D93_RS06710	COG0540	Belongs to the ATCase OTCase family
C3D93_RS06715	COG2974	May be involved in recombination
C3D93_RS06725	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS06730	COG0583	DNA-binding transcription factor activity
C3D93_RS06750	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS06765	COG3842	ATPase activity
C3D93_RS06770	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3D93_RS06770	COG1024	Enoyl-CoA hydratase
C3D93_RS06790	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
C3D93_RS06795	COG2137	regulation of response to DNA damage stimulus
C3D93_RS06805	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
C3D93_RS06815	COG0045	succinate-CoA ligase (ADP-forming) activity
C3D93_RS06820	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3D93_RS06825	COG0861	Integral membrane protein TerC family
C3D93_RS06830	COG0861	Integral membrane protein TerC family
C3D93_RS06835	COG0181	hydroxymethylbilane synthase activity
C3D93_RS06895	COG4964	Belongs to the GSP D family
C3D93_RS06920	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
C3D93_RS06930	COG0583	DNA-binding transcription factor activity
C3D93_RS06940	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3D93_RS06945	COG4311	Sarcosine oxidase, delta subunit
C3D93_RS06950	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3D93_RS06950	COG0404	The glycine cleavage system catalyzes the degradation of glycine
C3D93_RS06985	COG0812	UDP-N-acetylmuramate dehydrogenase activity
C3D93_RS06990	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
C3D93_RS06995	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3D93_RS07000	COG0735	belongs to the Fur family
C3D93_RS07005	COG0497	DNA recombination
C3D93_RS07010	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
C3D93_RS07015	COG1420	regulation of RNA biosynthetic process
C3D93_RS07020	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
C3D93_RS07030	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
C3D93_RS07040	COG0443	Heat shock 70 kDa protein
C3D93_RS07050	COG0612	Peptidase, M16
C3D93_RS07070	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C3D93_RS07115	COG0745	RESPONSE REGULATOR receiver
C3D93_RS07125	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
C3D93_RS07130	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
C3D93_RS07135	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
C3D93_RS07150	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3D93_RS07170	COG1193	negative regulation of DNA recombination
C3D93_RS07175	COG0492	ferredoxin-NADP+ reductase activity
C3D93_RS07180	COG1674	ftsk spoiiie
C3D93_RS07185	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
C3D93_RS07190	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
C3D93_RS07195	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
C3D93_RS07220	COG3706	GGDEF domain
C3D93_RS07240	COG2814	Major facilitator Superfamily
C3D93_RS07270	COG3486	L-lysine 6-monooxygenase (NADPH) activity
C3D93_RS07285	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS07295	COG3022	response to hydroperoxide
C3D93_RS07335	COG2197	response regulator
C3D93_RS07340	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
C3D93_RS07345	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
C3D93_RS07350	COG0189	ligase activity
C3D93_RS07360	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3D93_RS07365	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
C3D93_RS07380	COG2423	ornithine cyclodeaminase activity
C3D93_RS07390	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS07395	COG0765	amino acid transport
C3D93_RS07400	COG0765	amino acid transport
C3D93_RS07405	COG1126	abc transporter atp-binding protein
C3D93_RS07460	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
C3D93_RS07470	COG2944	sequence-specific DNA binding
C3D93_RS07480	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
C3D93_RS07485	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
C3D93_RS07490	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
C3D93_RS07495	COG0009	L-threonylcarbamoyladenylate synthase
C3D93_RS07500	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS07505	COG1414	Transcriptional regulator
C3D93_RS07520	COG0765	amino acid transport
C3D93_RS07525	COG1126	abc transporter atp-binding protein
C3D93_RS07530	COG0028	Belongs to the TPP enzyme family
C3D93_RS07545	COG0028	Belongs to the TPP enzyme family
C3D93_RS07550	COG0583	DNA-binding transcription factor activity
C3D93_RS07555	COG4974	Belongs to the 'phage' integrase family
C3D93_RS07560	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
C3D93_RS07565	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
C3D93_RS07580	COG1686	Belongs to the peptidase S11 family
C3D93_RS07590	COG2814	Major facilitator Superfamily
C3D93_RS07600	COG1074	ATP-dependent DNA helicase activity
C3D93_RS07610	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
C3D93_RS07615	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
C3D93_RS07620	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
C3D93_RS07645	COG2321	neutral zinc metallopeptidase
C3D93_RS07650	COG0009	L-threonylcarbamoyladenylate synthase
C3D93_RS07695	COG3360	Dodecin
C3D93_RS07700	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
C3D93_RS07705	COG2850	peptidyl-arginine hydroxylation
C3D93_RS07710	COG3539	Fimbrial protein
C3D93_RS07715	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
C3D93_RS07720	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3D93_RS07735	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS07740	COG0765	amino acid transport
C3D93_RS07745	COG1126	abc transporter atp-binding protein
C3D93_RS07750	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C3D93_RS07755	COG1758	RNA polymerase activity
C3D93_RS07760	COG0194	GDP metabolic process
C3D93_RS07765	COG3258	Cytochrome c
C3D93_RS07770	COG2863	cytochrome
C3D93_RS07775	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS07780	COG0791	NLP P60 protein
C3D93_RS07785	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
C3D93_RS07805	COG1561	YicC-like family, N-terminal region
C3D93_RS07810	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
C3D93_RS07830	COG2200	EAL domain
C3D93_RS07830	COG2199	diguanylate cyclase activity
C3D93_RS07835	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
C3D93_RS07845	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C3D93_RS07850	COG0174	glutamine synthetase
C3D93_RS07860	COG2204	response regulator
C3D93_RS07865	COG0583	DNA-binding transcription factor activity
C3D93_RS07870	COG1741	Belongs to the pirin family
C3D93_RS07875	COG1741	Belongs to the pirin family
C3D93_RS07885	COG3842	ATPase activity
C3D93_RS07890	COG1178	ABC-type Fe3 transport system permease component
C3D93_RS07895	COG1840	ABC-type Fe3 transport system, periplasmic component
C3D93_RS07905	COG0583	DNA-binding transcription factor activity
C3D93_RS07915	COG0656	L-ascorbic acid biosynthetic process
C3D93_RS07930	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
C3D93_RS07935	COG0583	DNA-binding transcription factor activity
C3D93_RS07950	COG0783	Belongs to the Dps family
C3D93_RS07970	COG0463	Glycosyl transferase, family 2
C3D93_RS07990	COG0438	transferase activity, transferring glycosyl groups
C3D93_RS08005	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
C3D93_RS08030	COG0300	oxidoreductase activity
C3D93_RS08075	COG0861	Integral membrane protein TerC family
C3D93_RS08080	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS08100	COG0714	Associated with various cellular activities
C3D93_RS08135	COG3119	arylsulfatase activity
C3D93_RS08160	COG2197	response regulator
C3D93_RS08170	COG2944	sequence-specific DNA binding
C3D93_RS08180	COG0625	glutathione transferase activity
C3D93_RS08210	COG0179	Fumarylacetoacetate (FAA) hydrolase
C3D93_RS08215	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS08260	COG0431	NADPH-dependent FMN reductase
C3D93_RS08290	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS08295	COG0583	DNA-binding transcription factor activity
C3D93_RS08315	COG2111	Na H antiporter
C3D93_RS08315	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
C3D93_RS08320	COG1006	Multisubunit Na H antiporter MnhC subunit
C3D93_RS08325	COG0651	ATP synthesis coupled electron transport
C3D93_RS08330	COG1863	multisubunit Na H antiporter MnhE subunit
C3D93_RS08335	COG2212	antiporter activity
C3D93_RS08360	COG0590	tRNA wobble adenosine to inosine editing
C3D93_RS08365	COG1619	proteins homologs of microcin C7 resistance protein MccF
C3D93_RS08370	COG1024	Enoyl-CoA hydratase
C3D93_RS08385	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C3D93_RS08390	COG0488	(ABC) transporter
C3D93_RS08425	COG1017	nitric oxide dioxygenase activity
C3D93_RS08425	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3D93_RS08430	COG1959	2 iron, 2 sulfur cluster binding
C3D93_RS08435	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3D93_RS08455	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
C3D93_RS08460	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
C3D93_RS08465	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
C3D93_RS08470	COG0084	hydrolase, TatD family'
C3D93_RS08485	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS08495	COG1126	abc transporter atp-binding protein
C3D93_RS08505	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C3D93_RS08520	COG0028	Belongs to the TPP enzyme family
C3D93_RS08530	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
C3D93_RS08530	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C3D93_RS08540	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C3D93_RS08595	COG4336	lyase activity
C3D93_RS08605	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS08605	COG2205	protein histidine kinase activity
C3D93_RS08610	COG2197	response regulator
C3D93_RS08615	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
C3D93_RS08615	COG3210	domain, Protein
C3D93_RS08615	COG3064	Membrane
C3D93_RS08625	COG3121	Chaperone
C3D93_RS08630	COG3188	usher protein
C3D93_RS08635	COG3539	Fimbrial protein
C3D93_RS08640	COG2831	hemolysin activation secretion protein
C3D93_RS08655	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C3D93_RS08705	COG0668	transmembrane transport
C3D93_RS08725	COG0483	inositol monophosphate 1-phosphatase activity
C3D93_RS08730	COG1253	flavin adenine dinucleotide binding
C3D93_RS08735	COG1968	undecaprenyl-diphosphatase activity
C3D93_RS08740	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3D93_RS08755	COG0215	cysteine-tRNA ligase activity
C3D93_RS08765	COG0825	malonyl-CoA metabolic process
C3D93_RS08775	COG0037	tRNA processing
C3D93_RS08780	COG0527	aspartate kinase activity
C3D93_RS08805	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3D93_RS08810	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C3D93_RS08810	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
C3D93_RS08825	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3D93_RS08830	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
C3D93_RS08835	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS08845	COG0583	DNA-binding transcription factor activity
C3D93_RS08870	COG3842	ATPase activity
C3D93_RS08880	COG1902	pentaerythritol trinitrate reductase activity
C3D93_RS08880	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3D93_RS08885	COG1414	Transcriptional regulator
C3D93_RS08890	COG1832	CoA-binding protein
C3D93_RS08900	COG0251	oxidation-reduction process
C3D93_RS08925	COG1902	pentaerythritol trinitrate reductase activity
C3D93_RS08935	COG1215	transferase activity, transferring glycosyl groups
C3D93_RS08940	COG0726	polysaccharide deacetylase
C3D93_RS08940	COG1649	PFAM Uncharacterised BCR, COG1649
C3D93_RS08960	COG1846	Transcriptional regulator
C3D93_RS08965	COG2197	response regulator
C3D93_RS08980	COG0166	Belongs to the GPI family
C3D93_RS08985	COG1045	serine acetyltransferase
C3D93_RS08995	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
C3D93_RS09000	COG0483	inositol monophosphate 1-phosphatase activity
C3D93_RS09005	COG1012	belongs to the aldehyde dehydrogenase family
C3D93_RS09010	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C3D93_RS09025	COG0210	DNA helicase
C3D93_RS09030	COG0598	Magnesium transport protein CorA
C3D93_RS09040	COG0747	negative chemotaxis
C3D93_RS09045	COG0601	transmembrane transport
C3D93_RS09050	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS09055	COG4172	Belongs to the ABC transporter superfamily
C3D93_RS09060	COG1846	Transcriptional regulator
C3D93_RS09115	COG4964	Belongs to the GSP D family
C3D93_RS09155	COG2204	response regulator
C3D93_RS09170	COG1595	DNA-templated transcription, initiation
C3D93_RS09180	COG3474	cytochrome
C3D93_RS09185	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
C3D93_RS09200	COG3384	dioxygenase
C3D93_RS09205	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
C3D93_RS09235	COG2885	chlorophyll binding
C3D93_RS09270	COG0697	spore germination
C3D93_RS09275	COG0730	response to heat
C3D93_RS09295	COG0583	DNA-binding transcription factor activity
C3D93_RS09300	COG0427	acetyl-CoA hydrolase
C3D93_RS09355	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3D93_RS09360	COG0154	amidase activity
C3D93_RS09370	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
C3D93_RS09385	COG0495	leucyl-tRNA aminoacylation
C3D93_RS09390	COG2814	Major facilitator Superfamily
C3D93_RS09425	COG0267	Belongs to the bacterial ribosomal protein bL33 family
C3D93_RS09430	COG0227	Belongs to the bacterial ribosomal protein bL28 family
C3D93_RS09435	COG2814	Major facilitator Superfamily
C3D93_RS09455	COG4176	ABC-type proline glycine betaine transport system permease component
C3D93_RS09465	COG1942	4-Oxalocrotonate Tautomerase
C3D93_RS09470	COG0183	Belongs to the thiolase family
C3D93_RS09480	COG1802	Transcriptional regulator
C3D93_RS09490	COG1024	Enoyl-CoA hydratase
C3D93_RS09505	COG2032	superoxide dismutase activity
C3D93_RS09520	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
C3D93_RS09545	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3D93_RS09550	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3D93_RS09560	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
C3D93_RS09565	COG0736	holo-[acyl-carrier-protein] synthase activity
C3D93_RS09570	COG1472	Belongs to the glycosyl hydrolase 3 family
C3D93_RS09575	COG0322	excinuclease ABC activity
C3D93_RS09580	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
C3D93_RS09590	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
C3D93_RS09590	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
C3D93_RS09595	COG2224	Isocitrate lyase
C3D93_RS09620	COG0559	Belongs to the binding-protein-dependent transport system permease family
C3D93_RS09630	COG4638	Rieske (2fe-2S)
C3D93_RS09640	COG1024	Enoyl-CoA hydratase
C3D93_RS09650	COG0633	Ferredoxin
C3D93_RS09655	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS09670	COG0183	Belongs to the thiolase family
C3D93_RS09685	COG0583	DNA-binding transcription factor activity
C3D93_RS09715	COG2346	COG2346, Truncated hemoglobins
C3D93_RS09840	COG2207	Transcriptional regulator
C3D93_RS09885	COG1132	(ABC) transporter
C3D93_RS09910	COG0659	secondary active sulfate transmembrane transporter activity
C3D93_RS09940	COG2169	Transcriptional regulator
C3D93_RS09945	COG5507	3-demethylubiquinone-9 3-methyltransferase
C3D93_RS09950	COG0384	phenazine biosynthesis protein PhzF
C3D93_RS09955	COG0583	DNA-binding transcription factor activity
C3D93_RS09960	COG2733	membrane
C3D93_RS09975	COG1012	belongs to the aldehyde dehydrogenase family
C3D93_RS09980	COG3284	Transcriptional regulator
C3D93_RS10010	COG1380	Effector of murein hydrolase LrgA
C3D93_RS10015	COG4106	trans-aconitate 2-methyltransferase activity
C3D93_RS10015	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
C3D93_RS10025	COG0156	8-amino-7-oxononanoate synthase activity
C3D93_RS10095	COG1131	(ABC) transporter
C3D93_RS10100	COG0842	Transport permease protein
C3D93_RS10105	COG0628	permease
C3D93_RS10135	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C3D93_RS10145	COG0828	Belongs to the bacterial ribosomal protein bS21 family
C3D93_RS10150	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
C3D93_RS10155	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
C3D93_RS10160	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
C3D93_RS10165	COG0330	HflC and HflK could
C3D93_RS10170	COG0330	HflC and HflK could
C3D93_RS10175	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
C3D93_RS10180	COG1923	regulation of RNA biosynthetic process
C3D93_RS10185	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
C3D93_RS10190	COG1160	GTP binding
C3D93_RS10195	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3D93_RS10200	COG2976	Protein conserved in bacteria
C3D93_RS10205	COG0124	histidyl-tRNA synthetase
C3D93_RS10210	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
C3D93_RS10220	COG0820	rRNA (adenine-C2-)-methyltransferase activity
C3D93_RS10225	COG0105	UTP biosynthetic process
C3D93_RS10230	COG0525	valine-tRNA ligase activity
C3D93_RS10245	COG0642	Histidine kinase
C3D93_RS10270	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
C3D93_RS10275	COG0336	Belongs to the RNA methyltransferase TrmD family
C3D93_RS10280	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
C3D93_RS10285	COG0228	four-way junction DNA binding
C3D93_RS10295	COG0425	Belongs to the sulfur carrier protein TusA family
C3D93_RS10300	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
C3D93_RS10345	COG0154	amidase activity
C3D93_RS10350	COG4172	Belongs to the ABC transporter superfamily
C3D93_RS10355	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS10360	COG0601	transmembrane transport
C3D93_RS10365	COG0747	negative chemotaxis
C3D93_RS10395	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3D93_RS10405	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
C3D93_RS10425	COG3395	kinase activity
C3D93_RS10440	COG1024	Enoyl-CoA hydratase
C3D93_RS10460	COG0633	Ferredoxin
C3D93_RS10465	COG0443	Heat shock 70 kDa protein
C3D93_RS10470	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
C3D93_RS10475	COG0316	Belongs to the HesB IscA family
C3D93_RS10480	COG0822	iron-sulfur transferase activity
C3D93_RS10485	COG1104	cysteine desulfurase activity
C3D93_RS10495	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
C3D93_RS10500	COG0556	nucleotide-excision repair
C3D93_RS10510	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
C3D93_RS10540	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C3D93_RS10560	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS10565	COG0183	Belongs to the thiolase family
C3D93_RS10575	COG1024	Enoyl-CoA hydratase
C3D93_RS10590	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS10595	COG0583	DNA-binding transcription factor activity
C3D93_RS10600	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
C3D93_RS10605	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
C3D93_RS10610	COG0740	serine-type endopeptidase activity
C3D93_RS10615	COG0544	peptidyl-prolyl cis-trans isomerase activity
C3D93_RS10625	COG1278	Cold shock
C3D93_RS10635	COG1278	Cold shock
C3D93_RS10670	COG2171	N-acyltransferase activity
C3D93_RS10675	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C3D93_RS10680	COG2890	protein-(glutamine-N5) methyltransferase activity
C3D93_RS10685	COG0488	(ABC) transporter
C3D93_RS10690	COG4771	TonB-dependent receptor
C3D93_RS10695	COG0210	DNA helicase
C3D93_RS10715	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
C3D93_RS10720	COG0196	riboflavin kinase activity
C3D93_RS10725	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
C3D93_RS10730	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
C3D93_RS10735	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
C3D93_RS10745	COG1522	sequence-specific DNA binding
C3D93_RS10765	COG2951	lytic endotransglycosylase activity
C3D93_RS10770	COG2833	Protein of unknown function (DUF455)
C3D93_RS10790	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C3D93_RS10790	COG0189	ligase activity
C3D93_RS10795	COG1181	Belongs to the D-alanine--D-alanine ligase family
C3D93_RS10795	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C3D93_RS10800	COG3237	CsbD-like
C3D93_RS10810	COG2823	Periplasmic or secreted lipoprotein
C3D93_RS10835	COG4181	ATPase activity
C3D93_RS10845	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C3D93_RS10850	COG0584	glycerophosphoryl diester phosphodiesterase
C3D93_RS10855	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
C3D93_RS10865	COG0678	peroxiredoxin activity
C3D93_RS10865	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
C3D93_RS10875	COG0789	Transcriptional regulator
C3D93_RS10880	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
C3D93_RS10910	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
C3D93_RS10915	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
C3D93_RS10925	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
C3D93_RS10930	COG2252	PERMEase
C3D93_RS10940	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3D93_RS10970	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C3D93_RS10975	COG2358	TRAP transporter, solute receptor (TAXI family
C3D93_RS11010	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3D93_RS11015	COG1366	Belongs to the anti-sigma-factor antagonist family
C3D93_RS11020	COG2172	sigma factor antagonist activity
C3D93_RS11025	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3D93_RS11035	COG2208	phosphoserine phosphatase activity
C3D93_RS11035	COG2770	Histidine kinase
C3D93_RS11060	COG1595	DNA-templated transcription, initiation
C3D93_RS11075	COG4792	protein secretion
C3D93_RS11080	COG4791	protein targeting
C3D93_RS11085	COG4794	Type iii secretion
C3D93_RS11090	COG4790	Type iii secretion
C3D93_RS11125	COG4669	(LipO)protein
C3D93_RS11190	COG4789	Type iii secretion
C3D93_RS11230	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C3D93_RS11235	COG0840	transmembrane signaling receptor activity
C3D93_RS11240	COG2233	PERMEase
C3D93_RS11265	COG1840	ABC-type Fe3 transport system, periplasmic component
C3D93_RS11270	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3D93_RS11275	COG1178	ABC-type Fe3 transport system permease component
C3D93_RS11280	COG3842	ATPase activity
C3D93_RS11285	COG0583	DNA-binding transcription factor activity
C3D93_RS11305	COG0501	Belongs to the peptidase M48B family
C3D93_RS11315	COG0697	spore germination
C3D93_RS11325	COG1846	Transcriptional regulator
C3D93_RS11335	COG1566	PFAM secretion protein HlyD family protein
C3D93_RS11340	COG2814	Major facilitator Superfamily
C3D93_RS11345	COG0473	3-isopropylmalate dehydrogenase activity
C3D93_RS11355	COG0747	negative chemotaxis
C3D93_RS11365	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS11380	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C3D93_RS11405	COG1012	belongs to the aldehyde dehydrogenase family
C3D93_RS11415	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C3D93_RS11420	COG1115	amino acid carrier protein
C3D93_RS11425	COG0433	COG0433 Predicted ATPase
C3D93_RS11430	COG0217	transcriptional regulatory protein
C3D93_RS11435	COG0151	Belongs to the GarS family
C3D93_RS11440	COG0408	coproporphyrinogen oxidase activity
C3D93_RS11445	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
C3D93_RS11450	COG0799	negative regulation of ribosome biogenesis
C3D93_RS11455	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
C3D93_RS11460	COG0424	maF-like protein
C3D93_RS11465	COG3468	outer membrane autotransporter barrel domain protein
C3D93_RS11505	COG1530	ribonuclease E activity
C3D93_RS11510	COG0077	Prephenate dehydratase
C3D93_RS11525	COG1132	(ABC) transporter
C3D93_RS11530	COG0859	PFAM glycosyl transferase family 9
C3D93_RS11555	COG2194	sulfuric ester hydrolase activity
C3D93_RS11560	COG0438	transferase activity, transferring glycosyl groups
C3D93_RS11565	COG0463	Glycosyl transferase, family 2
C3D93_RS11570	COG0726	polysaccharide deacetylase
C3D93_RS11575	COG0438	transferase activity, transferring glycosyl groups
C3D93_RS11590	COG1643	Atp-dependent helicase
C3D93_RS11595	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C3D93_RS11595	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
C3D93_RS11600	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
C3D93_RS11610	COG0704	Plays a role in the regulation of phosphate uptake
C3D93_RS11615	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
C3D93_RS11620	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS11645	COG1177	transmembrane transport
C3D93_RS11650	COG1176	ABC-type spermidine putrescine transport system, permease component I
C3D93_RS11655	COG3842	ATPase activity
C3D93_RS11660	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
C3D93_RS11675	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
C3D93_RS11680	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C3D93_RS11690	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C3D93_RS11690	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
C3D93_RS11705	COG0372	Belongs to the citrate synthase family
C3D93_RS11710	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
C3D93_RS11715	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
C3D93_RS11720	COG1053	succinate dehydrogenase
C3D93_RS11725	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
C3D93_RS11730	COG2009	succinate dehydrogenase
C3D93_RS11735	COG2188	Transcriptional regulator
C3D93_RS11740	COG0039	L-malate dehydrogenase activity
C3D93_RS11780	COG1981	membrane
C3D93_RS11805	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3D93_RS11815	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
C3D93_RS11845	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
C3D93_RS11850	COG0148	phosphopyruvate hydratase activity
C3D93_RS11860	COG2877	3-deoxy-8-phosphooctulonate synthase activity
C3D93_RS11865	COG0504	CTP synthase activity
C3D93_RS11890	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS11900	COG0747	negative chemotaxis
C3D93_RS11905	COG4172	Belongs to the ABC transporter superfamily
C3D93_RS11910	COG1446	asparaginase
C3D93_RS11940	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
C3D93_RS11955	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
C3D93_RS11960	COG0697	spore germination
C3D93_RS11965	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3D93_RS11975	COG3193	protein, possibly involved in utilization of glycolate and propanediol
C3D93_RS11985	COG0791	NLP P60 protein
C3D93_RS12000	COG0583	DNA-binding transcription factor activity
C3D93_RS12015	COG0583	DNA-binding transcription factor activity
C3D93_RS12025	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
C3D93_RS12040	COG0670	Belongs to the BI1 family
C3D93_RS12045	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS12060	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3D93_RS12070	COG1381	Involved in DNA repair and RecF pathway recombination
C3D93_RS12075	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
C3D93_RS12080	COG0571	ribonuclease III activity
C3D93_RS12085	COG0681	Belongs to the peptidase S26 family
C3D93_RS12090	COG0481	GTPase activity
C3D93_RS12095	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3D93_RS12120	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C3D93_RS12125	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
C3D93_RS12140	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
C3D93_RS12145	COG0416	fatty acid biosynthetic process
C3D93_RS12150	COG0333	Belongs to the bacterial ribosomal protein bL32 family
C3D93_RS12155	COG1399	metal-binding, possibly nucleic acid-binding protein
C3D93_RS12160	COG0424	maF-like protein
C3D93_RS12170	COG3023	N-Acetylmuramoyl-L-alanine amidase
C3D93_RS12185	COG3022	response to hydroperoxide
C3D93_RS12200	COG0135	phosphoribosylanthranilate isomerase activity
C3D93_RS12215	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C3D93_RS12220	COG0101	tRNA pseudouridine synthase activity
C3D93_RS12230	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
C3D93_RS12235	COG0473	3-isopropylmalate dehydrogenase activity
C3D93_RS12240	COG0066	3-isopropylmalate dehydratase activity
C3D93_RS12245	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
C3D93_RS12255	COG1122	ATPase activity
C3D93_RS12290	COG0243	molybdopterin cofactor binding
C3D93_RS12290	COG3383	formate dehydrogenase (NAD+) activity
C3D93_RS12320	COG0489	protein tyrosine kinase activity
C3D93_RS12325	COG0746	molybdenum cofactor guanylyltransferase activity
C3D93_RS12330	COG0303	'Molybdopterin
C3D93_RS12335	COG1763	Mo-molybdopterin cofactor biosynthetic process
C3D93_RS12345	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
C3D93_RS12350	COG5001	Diguanylate cyclase
C3D93_RS12370	COG3842	ATPase activity
C3D93_RS12380	COG0406	alpha-ribazole phosphatase activity
C3D93_RS12390	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
C3D93_RS12395	COG0505	Belongs to the CarA family
C3D93_RS12400	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
C3D93_RS12440	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
C3D93_RS12445	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS12455	COG2867	negative regulation of translational initiation
C3D93_RS12465	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
C3D93_RS12470	COG3706	GGDEF domain
C3D93_RS12475	COG0330	HflC and HflK could
C3D93_RS12490	COG0518	GMP synthase (glutamine-hydrolyzing) activity
C3D93_RS12490	COG0519	Catalyzes the synthesis of GMP from XMP
C3D93_RS12500	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
C3D93_RS12505	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3D93_RS12510	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
C3D93_RS12515	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3D93_RS12525	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
C3D93_RS12530	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3D93_RS12535	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
C3D93_RS12540	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3D93_RS12545	COG0750	zinc metalloprotease
C3D93_RS12550	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
C3D93_RS12560	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
C3D93_RS12565	COG0233	cytoplasmic translational termination
C3D93_RS12570	COG0528	UMP kinase activity
C3D93_RS12575	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
C3D93_RS12580	COG0052	Belongs to the universal ribosomal protein uS2 family
C3D93_RS12585	COG0024	Methionine aminopeptidase
C3D93_RS12590	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
C3D93_RS12620	COG0285	dihydrofolate synthase activity
C3D93_RS12655	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
C3D93_RS12665	COG1677	Flagellar hook-basal body complex protein FliE
C3D93_RS12675	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
C3D93_RS12680	COG1317	bacterial-type flagellum organization
C3D93_RS12685	COG1157	protein secretion by the type III secretion system
C3D93_RS12710	COG1580	Controls the rotational direction of flagella during chemotaxis
C3D93_RS12730	COG1338	Plays a role in the flagellum-specific transport system
C3D93_RS12750	COG0840	transmembrane signaling receptor activity
C3D93_RS12755	COG0840	transmembrane signaling receptor activity
C3D93_RS12760	COG0840	transmembrane signaling receptor activity
C3D93_RS12770	COG1256	bacterial-type flagellum assembly
C3D93_RS12780	COG1706	bacterial-type flagellum-dependent cell motility
C3D93_RS12785	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
C3D93_RS12800	COG1749	Flagellar hook protein flgE
C3D93_RS12810	COG1558	bacterial-type flagellum-dependent cell motility
C3D93_RS12815	COG1815	bacterial-type flagellum-dependent cell motility
C3D93_RS12855	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS12860	COG0765	amino acid transport
C3D93_RS12865	COG1126	abc transporter atp-binding protein
C3D93_RS12880	COG4948	Mandelate Racemase Muconate Lactonizing
C3D93_RS12885	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS12895	COG0066	3-isopropylmalate dehydratase activity
C3D93_RS12910	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS12920	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS12930	COG1802	Transcriptional regulator
C3D93_RS12945	COG0583	DNA-binding transcription factor activity
C3D93_RS12965	COG1695	Transcriptional regulator
C3D93_RS12975	COG3568	Endonuclease Exonuclease Phosphatase
C3D93_RS12980	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3D93_RS13030	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
C3D93_RS13040	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
C3D93_RS13060	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
C3D93_RS13090	COG0667	Aldo Keto reductase
C3D93_RS13105	COG2259	Doxx family
C3D93_RS13135	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS13155	COG0386	Belongs to the glutathione peroxidase family
C3D93_RS13160	COG0625	glutathione transferase activity
C3D93_RS13175	COG0095	Lipoate-protein ligase
C3D93_RS13190	COG0688	phosphatidylethanolamine metabolic process
C3D93_RS13200	COG1464	Belongs to the NlpA lipoprotein family
C3D93_RS13215	COG2363	Small membrane protein
C3D93_RS13240	COG3842	ATPase activity
C3D93_RS13245	COG0395	ABC-type sugar transport system, permease component
C3D93_RS13250	COG1175	transmembrane transport
C3D93_RS13255	COG1653	transport
C3D93_RS13265	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
C3D93_RS13285	COG0559	Belongs to the binding-protein-dependent transport system permease family
C3D93_RS13305	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
C3D93_RS13330	COG2311	Membrane
C3D93_RS13355	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
C3D93_RS13365	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
C3D93_RS13370	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
C3D93_RS13375	COG1760	l-serine dehydratase
C3D93_RS13380	COG1283	sodium-dependent phosphate transmembrane transporter activity
C3D93_RS13385	COG0412	Dienelactone hydrolase
C3D93_RS13400	COG1611	Belongs to the LOG family
C3D93_RS13420	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
C3D93_RS13425	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
C3D93_RS13430	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
C3D93_RS13435	COG2251	uridine kinase activity
C3D93_RS13435	COG0195	Participates in both transcription termination and antitermination
C3D93_RS13440	COG0779	Required for maturation of 30S ribosomal subunits
C3D93_RS13445	COG1187	pseudouridine synthase activity
C3D93_RS13450	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
C3D93_RS13460	COG0583	DNA-binding transcription factor activity
C3D93_RS13470	COG0523	cobalamin synthesis protein
C3D93_RS13490	COG0625	glutathione transferase activity
C3D93_RS13495	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
C3D93_RS13500	COG1047	Peptidyl-prolyl cis-trans
C3D93_RS13505	COG2003	Belongs to the UPF0758 family
C3D93_RS13510	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
C3D93_RS13515	COG3483	tryptophan 2,3-dioxygenase activity
C3D93_RS13520	COG0254	rRNA binding
C3D93_RS13530	COG0534	Mate efflux family protein
C3D93_RS13550	COG2304	oxidoreductase activity
C3D93_RS13570	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS13575	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3D93_RS13580	COG1562	ergosterol biosynthetic process
C3D93_RS13585	COG1562	ergosterol biosynthetic process
C3D93_RS13590	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
C3D93_RS13590	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
C3D93_RS13595	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
C3D93_RS13605	COG0842	Transport permease protein
C3D93_RS13610	COG1131	(ABC) transporter
C3D93_RS13630	COG1477	protein flavinylation
C3D93_RS13645	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
C3D93_RS13660	COG5564	TIM-barrel signal transduction protein
C3D93_RS13665	COG5441	Belongs to the UPF0261 family
C3D93_RS13675	COG3468	outer membrane autotransporter barrel domain protein
C3D93_RS13695	COG0542	response to heat
C3D93_RS13700	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3D93_RS13715	COG0494	nUDIX hydrolase
C3D93_RS13720	COG3530	Putative quorum-sensing-regulated virulence factor
C3D93_RS13730	COG1595	DNA-templated transcription, initiation
C3D93_RS13735	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3D93_RS13770	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS13775	COG0765	amino acid transport
C3D93_RS13780	COG0765	amino acid transport
C3D93_RS13805	COG2988	succinylglutamate desuccinylase activity
C3D93_RS13830	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS13835	COG2084	Dehydrogenase
C3D93_RS13850	COG1619	proteins homologs of microcin C7 resistance protein MccF
C3D93_RS13865	COG2814	Major facilitator Superfamily
C3D93_RS13875	COG0583	DNA-binding transcription factor activity
C3D93_RS13915	COG0672	)-iron permease
C3D93_RS13930	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
C3D93_RS13935	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS13940	COG3243	poly(R)-hydroxyalkanoic acid synthase
C3D93_RS13950	COG0564	pseudouridine synthase activity
C3D93_RS13960	COG1199	ATP-dependent helicase activity
C3D93_RS13965	COG2183	response to ionizing radiation
C3D93_RS13970	COG0180	Tryptophanyl-tRNA synthetase
C3D93_RS13995	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS14005	COG0583	DNA-binding transcription factor activity
C3D93_RS14010	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS14015	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
C3D93_RS14020	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3D93_RS14025	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3D93_RS14030	COG0567	Dehydrogenase, E1 component
C3D93_RS14040	COG1522	sequence-specific DNA binding
C3D93_RS14050	COG0281	malic enzyme
C3D93_RS14050	COG0280	phosphate acetyltransferase
C3D93_RS14055	COG3539	Fimbrial protein
C3D93_RS14075	COG0613	PHP domain protein
C3D93_RS14085	COG0658	competence protein
C3D93_RS14085	COG2333	competence protein COMEC
C3D93_RS14110	COG0084	hydrolase, TatD family'
C3D93_RS14115	COG1136	(ABC) transporter
C3D93_RS14130	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
C3D93_RS14140	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS14145	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
C3D93_RS14160	COG1022	Amp-dependent synthetase and ligase
C3D93_RS14195	COG2205	protein histidine kinase activity
C3D93_RS14200	COG0745	RESPONSE REGULATOR receiver
C3D93_RS14205	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
C3D93_RS14215	COG1295	ribonuclease BN
C3D93_RS14230	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C3D93_RS14260	COG1534	Rna-binding protein
C3D93_RS14265	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
C3D93_RS14270	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C3D93_RS14280	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
C3D93_RS14290	COG0248	Ppx GppA phosphatase
C3D93_RS14315	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
C3D93_RS14330	COG2732	(Barnase) inhibitor
C3D93_RS14340	COG0280	phosphate acetyltransferase
C3D93_RS14340	COG0281	malic enzyme
C3D93_RS14350	COG0436	Aminotransferase
C3D93_RS14360	COG0741	lytic transglycosylase activity
C3D93_RS14365	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
C3D93_RS14390	COG1648	precorrin-2 dehydrogenase activity
C3D93_RS14390	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
C3D93_RS14395	COG3468	outer membrane autotransporter barrel domain protein
C3D93_RS14405	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
C3D93_RS14410	COG2027	D-alanyl-D-alanine carboxypeptidase
C3D93_RS14415	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
C3D93_RS14420	COG0343	queuine tRNA-ribosyltransferase activity
C3D93_RS14425	COG1862	Preprotein translocase
C3D93_RS14430	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C3D93_RS14435	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C3D93_RS14450	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
C3D93_RS14455	COG1702	phosphate starvation-inducible protein PhoH
C3D93_RS14460	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
C3D93_RS14465	COG4535	Mg2 and Co2 transporter CorC
C3D93_RS14475	COG0667	Aldo Keto reductase
C3D93_RS14500	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
C3D93_RS14505	COG0745	RESPONSE REGULATOR receiver
C3D93_RS14510	COG2201	protein-glutamate methylesterase activity
C3D93_RS14520	COG0840	transmembrane signaling receptor activity
C3D93_RS14535	COG0745	RESPONSE REGULATOR receiver
C3D93_RS14570	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
C3D93_RS14580	COG0739	heme binding
C3D93_RS14590	COG0521	Mo-molybdopterin cofactor biosynthetic process
C3D93_RS14600	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
C3D93_RS14630	COG0625	glutathione transferase activity
C3D93_RS14645	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
C3D93_RS14650	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
C3D93_RS14655	COG0126	phosphoglycerate kinase activity
C3D93_RS14660	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C3D93_RS14665	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
C3D93_RS14670	COG1385	rRNA (uridine-N3-)-methyltransferase activity
C3D93_RS14680	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
C3D93_RS14685	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3D93_RS14690	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3D93_RS14695	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
C3D93_RS14705	COG4566	intracellular signal transduction
C3D93_RS14710	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
C3D93_RS14715	COG0339	signal peptide processing
C3D93_RS14720	COG1999	signal sequence binding
C3D93_RS14750	COG1187	pseudouridine synthase activity
C3D93_RS14755	COG3161	chorismate lyase activity
C3D93_RS14770	COG0667	Aldo Keto reductase
C3D93_RS14785	COG0335	large ribosomal subunit rRNA binding
C3D93_RS14820	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
C3D93_RS14840	COG0450	alkyl hydroperoxide reductase
C3D93_RS14845	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS14860	COG0123	including yeast histone deacetylase and acetoin utilization protein
C3D93_RS14865	COG2951	lytic endotransglycosylase activity
C3D93_RS14880	COG1555	photosystem II stabilization
C3D93_RS14880	COG1596	polysaccharide export
C3D93_RS14885	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3D93_RS14890	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
C3D93_RS14895	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
C3D93_RS14915	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
C3D93_RS14920	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
C3D93_RS14925	COG0287	Prephenate dehydrogenase
C3D93_RS14935	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
C3D93_RS14950	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
C3D93_RS14960	COG2814	Major facilitator Superfamily
C3D93_RS14995	COG0583	DNA-binding transcription factor activity
C3D93_RS15035	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C3D93_RS15050	COG0667	Aldo Keto reductase
C3D93_RS15060	COG5265	(ABC) transporter
C3D93_RS15110	COG0439	Biotin carboxylase
C3D93_RS15115	COG2188	Transcriptional regulator
C3D93_RS15140	COG0511	ligase activity, forming carbon-carbon bonds
C3D93_RS15150	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
C3D93_RS15170	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
C3D93_RS15190	COG0500	methyltransferase
C3D93_RS15195	COG5265	(ABC) transporter
C3D93_RS15210	COG0028	Belongs to the TPP enzyme family
C3D93_RS15215	COG0440	acetolactate synthase activity
C3D93_RS15220	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
C3D93_RS15225	COG1183	phosphatidylcholine synthase activity
C3D93_RS15240	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
C3D93_RS15245	COG1185	polyribonucleotide nucleotidyltransferase activity
C3D93_RS15260	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C3D93_RS15280	COG0149	triose-phosphate isomerase activity
C3D93_RS15285	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C3D93_RS15295	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3D93_RS15305	COG3799	methylaspartate ammonia-lyase activity
C3D93_RS15340	COG0583	DNA-binding transcription factor activity
C3D93_RS15345	COG0626	cystathionine gamma-synthase activity
C3D93_RS15350	COG3608	succinylglutamate desuccinylase aspartoacylase
C3D93_RS15370	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3D93_RS15390	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
C3D93_RS15405	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3D93_RS15410	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3D93_RS15415	COG1733	regulation of RNA biosynthetic process
C3D93_RS15425	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3D93_RS15430	COG0583	DNA-binding transcription factor activity
C3D93_RS15435	COG1597	lipid kinase activity
C3D93_RS15445	COG0671	phosphoesterase, PA-phosphatase related
C3D93_RS15475	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C3D93_RS15480	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3D93_RS15485	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3D93_RS15490	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3D93_RS15495	COG0649	NAD binding
C3D93_RS15500	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
C3D93_RS15510	COG1034	ATP synthesis coupled electron transport
C3D93_RS15515	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
C3D93_RS15520	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3D93_RS15530	COG0713	ATP synthesis coupled electron transport
C3D93_RS15545	COG1007	ATP synthesis coupled electron transport
C3D93_RS15555	COG4774	siderophore transport
C3D93_RS15560	COG4774	siderophore transport
C3D93_RS15575	COG0028	Belongs to the TPP enzyme family
C3D93_RS15580	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS15585	COG0583	DNA-binding transcription factor activity
C3D93_RS15590	COG0560	Phosphoserine phosphatase
C3D93_RS15595	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
C3D93_RS15600	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
C3D93_RS15605	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
C3D93_RS15620	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
C3D93_RS15625	COG0308	aminopeptidase N
C3D93_RS15645	COG0028	Belongs to the TPP enzyme family
C3D93_RS15665	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS15675	COG0318	PFAM AMP-dependent synthetase and ligase
C3D93_RS15685	COG1802	Transcriptional regulator
C3D93_RS15695	COG1802	Transcriptional regulator
C3D93_RS15705	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS15725	COG1126	abc transporter atp-binding protein
C3D93_RS15730	COG0765	amino acid transport
C3D93_RS15750	COG1538	Outer membrane efflux protein
C3D93_RS15755	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3D93_RS15760	COG2274	protein secretion by the type I secretion system
C3D93_RS15765	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
C3D93_RS15775	COG2994	toxin metabolic process
C3D93_RS15795	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3D93_RS15800	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
C3D93_RS15810	COG0583	DNA-binding transcription factor activity
C3D93_RS15820	COG0142	geranyltranstransferase activity
C3D93_RS15830	COG0261	This protein binds to 23S rRNA in the presence of protein L20
C3D93_RS15835	COG0211	Belongs to the bacterial ribosomal protein bL27 family
C3D93_RS15840	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
C3D93_RS15845	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
C3D93_RS15895	COG3712	iron ion homeostasis
C3D93_RS15900	COG4774	siderophore transport
C3D93_RS15905	COG2353	YceI-like domain
C3D93_RS15920	COG0019	diaminopimelate decarboxylase activity
C3D93_RS15940	COG0747	negative chemotaxis
C3D93_RS15945	COG0601	transmembrane transport
C3D93_RS15950	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS15960	COG0154	amidase activity
C3D93_RS15965	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C3D93_RS15990	COG2154	pterin-4-alpha-carbinolamine dehydratase
C3D93_RS16000	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
C3D93_RS16010	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
C3D93_RS16015	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C3D93_RS16020	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
C3D93_RS16025	COG1929	Belongs to the glycerate kinase type-1 family
C3D93_RS16030	COG0469	pyruvate kinase activity
C3D93_RS16035	COG0700	Nucleoside recognition
C3D93_RS16070	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
C3D93_RS16075	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3D93_RS16090	COG0823	Involved in the tonB-independent uptake of proteins
C3D93_RS16100	COG0848	biopolymer transport protein
C3D93_RS16105	COG0811	peptide transport
C3D93_RS16110	COG0824	Thioesterase
C3D93_RS16115	COG0442	prolyl-tRNA aminoacylation
C3D93_RS16120	COG0494	nUDIX hydrolase
C3D93_RS16135	COG2135	peptidase activity
C3D93_RS16210	COG1196	nuclear chromosome segregation
C3D93_RS16350	COG1464	Belongs to the NlpA lipoprotein family
C3D93_RS16380	COG4211	Belongs to the binding-protein-dependent transport system permease family
C3D93_RS16390	COG0154	amidase activity
C3D93_RS16395	COG0288	reversible hydration of carbon dioxide
C3D93_RS16410	COG0514	ATP-dependent DNA helicase (RecQ)
C3D93_RS16415	COG2255	four-way junction helicase activity
C3D93_RS16430	COG0632	four-way junction helicase activity
C3D93_RS16435	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
C3D93_RS16455	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3D93_RS16465	COG0006	proline dipeptidase activity
C3D93_RS16490	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C3D93_RS16505	COG4783	chaperone-mediated protein folding
C3D93_RS16510	COG0429	hydrolase of the alpha beta-hydrolase fold
C3D93_RS16540	COG0513	Belongs to the DEAD box helicase family
C3D93_RS16560	COG1546	Belongs to the CinA family
C3D93_RS16560	COG1058	Belongs to the CinA family
C3D93_RS16565	COG1414	Transcriptional regulator
C3D93_RS16585	COG0167	dihydroorotate dehydrogenase activity
C3D93_RS16590	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
C3D93_RS16605	COG0583	DNA-binding transcription factor activity
C3D93_RS16665	COG0280	phosphate acetyltransferase
C3D93_RS16665	COG0281	malic enzyme
C3D93_RS16675	COG0601	transmembrane transport
C3D93_RS16680	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS16685	COG4172	Belongs to the ABC transporter superfamily
C3D93_RS16715	COG0640	Transcriptional regulator
C3D93_RS16730	COG3135	benzoate transporter
C3D93_RS16735	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3D93_RS16740	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
C3D93_RS16745	COG0742	ribosomal rna small subunit methyltransferase
C3D93_RS16760	COG3639	organic phosphonate transmembrane transporter activity
C3D93_RS16765	COG3639	organic phosphonate transmembrane transporter activity
C3D93_RS16805	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
C3D93_RS16810	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C3D93_RS16820	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
C3D93_RS16825	COG1058	Belongs to the CinA family
C3D93_RS16825	COG1546	Belongs to the CinA family
C3D93_RS16830	COG0284	orotidine-5'-phosphate decarboxylase activity
C3D93_RS16835	COG1252	NADH dehydrogenase
C3D93_RS16850	COG3468	outer membrane autotransporter barrel domain protein
C3D93_RS16855	COG0459	protein refolding
C3D93_RS16860	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
C3D93_RS16880	COG1053	succinate dehydrogenase
C3D93_RS16895	COG0583	DNA-binding transcription factor activity
C3D93_RS16900	COG1053	succinate dehydrogenase
C3D93_RS16925	COG3706	GGDEF domain
C3D93_RS16965	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
C3D93_RS16975	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3D93_RS16985	COG0069	glutamate synthase activity
C3D93_RS16990	COG2391	methyltransferase activity
C3D93_RS16995	COG0679	Auxin Efflux Carrier
C3D93_RS17020	COG0557	exoribonuclease II activity
C3D93_RS17025	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3D93_RS17035	COG3128	pkhd-type hydroxylase
C3D93_RS17040	COG0776	regulation of translation
C3D93_RS17070	COG0642	Histidine kinase
C3D93_RS17075	COG3158	transport of potassium into the cell
C3D93_RS17080	COG0137	argininosuccinate synthase activity
C3D93_RS17085	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
C3D93_RS17090	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C3D93_RS17100	COG0583	DNA-binding transcription factor activity
C3D93_RS17110	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
C3D93_RS17130	COG2186	Transcriptional regulator
C3D93_RS17140	COG2223	nitrite transmembrane transporter activity
C3D93_RS17150	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3D93_RS17155	COG0450	alkyl hydroperoxide reductase
C3D93_RS17175	COG1214	PFAM Peptidase M22, glycoprotease
C3D93_RS17180	COG1573	uracil-dna glycosylase
C3D93_RS17185	COG0477	Major facilitator Superfamily
C3D93_RS17190	COG1196	nuclear chromosome segregation
C3D93_RS17200	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
C3D93_RS17205	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C3D93_RS17220	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C3D93_RS17225	COG1122	ATPase activity
C3D93_RS17230	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
C3D93_RS17235	COG1268	BioY protein
C3D93_RS17255	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3D93_RS17290	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
C3D93_RS17295	COG2878	Part of a membrane complex involved in electron transport
C3D93_RS17310	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
C3D93_RS17315	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
C3D93_RS17320	COG0251	oxidation-reduction process
C3D93_RS17330	COG3228	Belongs to the MtfA family
C3D93_RS17335	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C3D93_RS17345	COG0133	tryptophan synthase activity
C3D93_RS17350	COG0159	tryptophan synthase activity
C3D93_RS17355	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
C3D93_RS17375	COG1530	ribonuclease E activity
C3D93_RS17385	COG0546	phosphoglycolate phosphatase activity
C3D93_RS17390	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
C3D93_RS17395	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
C3D93_RS17410	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS17415	COG0583	DNA-binding transcription factor activity
C3D93_RS17425	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS17445	COG0251	oxidation-reduction process
C3D93_RS17450	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3D93_RS17450	COG1017	nitric oxide dioxygenase activity
C3D93_RS17455	COG2031	fatty acid transporter
C3D93_RS17460	COG1012	belongs to the aldehyde dehydrogenase family
C3D93_RS17465	COG1802	Transcriptional regulator
C3D93_RS17475	COG1278	Cold shock
C3D93_RS17480	COG0583	DNA-binding transcription factor activity
C3D93_RS17505	COG0183	Belongs to the thiolase family
C3D93_RS17515	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS17520	COG0583	DNA-binding transcription factor activity
C3D93_RS17525	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS17530	COG1024	Enoyl-CoA hydratase
C3D93_RS17535	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS17540	COG1253	flavin adenine dinucleotide binding
C3D93_RS17545	COG1285	pathogenesis
C3D93_RS17555	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3D93_RS17570	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
C3D93_RS17580	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3D93_RS17590	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS17595	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS17600	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS17620	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
C3D93_RS17625	COG1024	Enoyl-CoA hydratase
C3D93_RS17630	COG1960	acyl-CoA dehydrogenase activity
C3D93_RS17650	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
C3D93_RS17655	COG0022	dehydrogenase e1 component
C3D93_RS17660	COG1024	Enoyl-CoA hydratase
C3D93_RS17665	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3D93_RS17685	COG0683	leucine binding
C3D93_RS17690	COG0559	Belongs to the binding-protein-dependent transport system permease family
C3D93_RS17695	COG0411	ABC transporter
C3D93_RS17705	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3D93_RS17720	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS17745	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C3D93_RS17750	COG0793	Belongs to the peptidase S41A family
C3D93_RS17755	COG4942	peptidase
C3D93_RS17760	COG0588	phosphoglycerate mutase activity
C3D93_RS17765	COG1054	Belongs to the UPF0176 family
C3D93_RS17770	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
C3D93_RS17775	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
C3D93_RS17780	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
C3D93_RS17785	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS17800	COG2226	methyltransferase
C3D93_RS17805	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
C3D93_RS17820	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS17825	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
C3D93_RS17850	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C3D93_RS17875	COG1335	isochorismatase
C3D93_RS17880	COG2309	aminopeptidase activity
C3D93_RS17890	COG3473	Maleate cis-trans isomerase
C3D93_RS17900	COG2068	MobA-Related Protein
C3D93_RS17925	COG2204	response regulator
C3D93_RS17930	COG5000	phosphorelay sensor kinase activity
C3D93_RS17940	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C3D93_RS17940	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
C3D93_RS17950	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
C3D93_RS17985	COG0583	DNA-binding transcription factor activity
C3D93_RS18005	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3D93_RS18010	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS18025	COG0758	DNA mediated transformation
C3D93_RS18030	COG1522	sequence-specific DNA binding
C3D93_RS18040	COG0242	peptide deformylase activity
C3D93_RS18055	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
C3D93_RS18065	COG0546	phosphoglycolate phosphatase activity
C3D93_RS18085	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
C3D93_RS18090	COG1942	4-Oxalocrotonate Tautomerase
C3D93_RS18095	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3D93_RS18120	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C3D93_RS18140	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3D93_RS18145	COG1024	Enoyl-CoA hydratase
C3D93_RS18150	COG1414	Transcriptional regulator
C3D93_RS18155	COG0318	PFAM AMP-dependent synthetase and ligase
C3D93_RS18160	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS18205	COG3422	double-strand break repair
C3D93_RS18210	COG0330	HflC and HflK could
C3D93_RS18220	COG0251	oxidation-reduction process
C3D93_RS18270	COG3723	Recombinational DNA repair protein, rece pathway
C3D93_RS18305	COG0582	viral genome integration into host DNA
C3D93_RS18340	COG0706	membrane insertase activity
C3D93_RS18345	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
C3D93_RS18350	COG0594	ribonuclease P activity
C3D93_RS18355	COG0230	Belongs to the bacterial ribosomal protein bL34 family
C3D93_RS18360	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
C3D93_RS18375	COG1414	Transcriptional regulator
C3D93_RS18380	COG0154	amidase activity
C3D93_RS18395	COG1304	FMN binding
C3D93_RS18445	COG0183	Belongs to the thiolase family
C3D93_RS18450	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
C3D93_RS18465	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C3D93_RS18470	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS18480	COG2358	TRAP transporter, solute receptor (TAXI family
C3D93_RS18490	COG1629	transport
C3D93_RS18495	COG2922	Belongs to the Smg family
C3D93_RS18520	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
C3D93_RS18525	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS18530	COG1028	Short-chain dehydrogenase reductase Sdr
C3D93_RS18535	COG1012	belongs to the aldehyde dehydrogenase family
C3D93_RS18545	COG0028	Belongs to the TPP enzyme family
C3D93_RS18550	COG1522	sequence-specific DNA binding
C3D93_RS18555	COG3781	membrane
C3D93_RS18565	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
C3D93_RS18585	COG4206	TonB-dependent receptor
C3D93_RS18590	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3D93_RS18595	COG2022	thiamine diphosphate biosynthetic process
C3D93_RS18600	COG0351	phosphomethylpyrimidine kinase
C3D93_RS18605	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
C3D93_RS18620	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
C3D93_RS18630	COG0628	permease
C3D93_RS18640	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C3D93_RS18655	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
C3D93_RS18660	COG0049	tRNA binding
C3D93_RS18665	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
C3D93_RS18670	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
C3D93_RS18675	COG0051	transcription antitermination factor activity, RNA binding
C3D93_RS18680	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
C3D93_RS18685	COG0088	Forms part of the polypeptide exit tunnel
C3D93_RS18690	COG0089	rRNA binding
C3D93_RS18695	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
C3D93_RS18700	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
C3D93_RS18705	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
C3D93_RS18710	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
C3D93_RS18715	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
C3D93_RS18720	COG0255	Belongs to the universal ribosomal protein uL29 family
C3D93_RS18725	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
C3D93_RS18745	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
C3D93_RS18750	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
C3D93_RS18755	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
C3D93_RS18760	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
C3D93_RS18765	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
C3D93_RS18770	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
C3D93_RS18775	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
C3D93_RS18780	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
C3D93_RS18785	COG1841	ribosomal large subunit assembly
C3D93_RS18790	COG0200	Binds to the 23S rRNA
C3D93_RS18795	COG0201	protein transport
C3D93_RS18800	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
C3D93_RS18805	COG0257	Belongs to the bacterial ribosomal protein bL36 family
C3D93_RS18810	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
C3D93_RS18815	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
C3D93_RS18820	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
C3D93_RS18825	COG0202	RNA polymerase activity
C3D93_RS18830	COG0203	ribosomal protein L17
C3D93_RS18835	COG0537	adenosine 5'-monophosphoramidase activity
C3D93_RS18840	COG1324	tolerance protein
C3D93_RS18845	COG4232	protein-disulfide reductase activity
C3D93_RS18860	COG0218	Necessary for normal cell division and for the maintenance of normal septation
C3D93_RS18870	COG1333	cytochrome c biogenesis protein
C3D93_RS18875	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3D93_RS18890	COG1965	Belongs to the frataxin family
C3D93_RS18900	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
C3D93_RS18905	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
C3D93_RS18910	COG0232	Belongs to the dGTPase family. Type 2 subfamily
C3D93_RS18925	COG2814	Major facilitator Superfamily
C3D93_RS18930	COG0629	single-stranded DNA binding
C3D93_RS18970	COG0402	S-adenosylhomocysteine deaminase activity
C3D93_RS18980	COG0438	transferase activity, transferring glycosyl groups
C3D93_RS19000	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS19025	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
C3D93_RS19050	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3D93_RS19055	COG1956	GAF domain-containing protein
C3D93_RS19060	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3D93_RS19075	COG1652	LysM domain
C3D93_RS19090	COG0220	tRNA (guanine-N7-)-methyltransferase activity
C3D93_RS19105	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C3D93_RS19135	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS19150	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS19165	COG1024	Enoyl-CoA hydratase
C3D93_RS19180	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS19185	COG1309	transcriptional regulator
C3D93_RS19190	COG2816	NAD+ diphosphatase activity
C3D93_RS19195	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3D93_RS19280	COG2814	Major facilitator Superfamily
C3D93_RS19285	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
C3D93_RS19305	COG1999	signal sequence binding
C3D93_RS19310	COG0109	protoheme IX farnesyltransferase activity
C3D93_RS19350	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C3D93_RS19370	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
C3D93_RS19375	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C3D93_RS19385	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
C3D93_RS19390	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
C3D93_RS19400	COG0067	glutamate synthase
C3D93_RS19400	COG0069	glutamate synthase activity
C3D93_RS19400	COG0070	glutamate synthase
C3D93_RS19410	COG3047	cAMP biosynthetic process
C3D93_RS19420	COG1127	ABC transporter
C3D93_RS19425	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
C3D93_RS19430	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C3D93_RS19435	COG2853	Lipoprotein
C3D93_RS19450	COG0842	Transport permease protein
C3D93_RS19460	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
C3D93_RS19465	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
C3D93_RS19470	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
C3D93_RS19475	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
C3D93_RS19480	COG0131	Imidazoleglycerol-phosphate dehydratase
C3D93_RS19485	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
C3D93_RS19490	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
C3D93_RS19495	COG0107	imidazoleglycerol-phosphate synthase activity
C3D93_RS19500	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
C3D93_RS19505	COG0140	phosphoribosyl-ATP diphosphatase activity
C3D93_RS19510	COG0537	adenosine 5'-monophosphoramidase activity
C3D93_RS19515	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
C3D93_RS19520	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
C3D93_RS19535	COG3181	Tripartite tricarboxylate transporter family receptor
C3D93_RS19570	COG3702	type iv secretory pathway
C3D93_RS19575	COG3451	type IV secretory pathway VirB4
C3D93_RS19590	COG3736	Type IV secretory pathway, component VirB8
C3D93_RS19595	COG3504	Conjugal transfer protein
C3D93_RS19600	COG2948	multi-organism process
C3D93_RS19605	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
C3D93_RS19615	COG0697	spore germination
C3D93_RS19635	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
C3D93_RS19640	COG0747	negative chemotaxis
C3D93_RS19645	COG0601	transmembrane transport
C3D93_RS19650	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3D93_RS19665	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
C3D93_RS19675	COG0494	nUDIX hydrolase
C3D93_RS19720	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
C3D93_RS19725	COG0237	dephospho-CoA kinase activity
C3D93_RS19730	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
C3D93_RS19745	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
C3D93_RS19750	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
C3D93_RS19760	COG0477	Major facilitator Superfamily
C3D93_RS19765	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
C3D93_RS19780	COG1126	abc transporter atp-binding protein
C3D93_RS19785	COG0765	amino acid transport
C3D93_RS19790	COG4597	amino acid ABC transporter
C3D93_RS19795	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3D93_RS19800	COG2884	Cell division ATP-binding protein ftsE
C3D93_RS19805	COG2177	Part of the ABC transporter FtsEX involved in
C3D93_RS19810	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
C3D93_RS19820	COG1194	a g-specific adenine glycosylase
C3D93_RS19830	COG2226	methyltransferase
C3D93_RS19840	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS19845	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS19860	COG1024	Enoyl-CoA hydratase
C3D93_RS19880	COG1024	Enoyl-CoA hydratase
C3D93_RS19885	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3D93_RS19900	COG0753	catalase activity
C3D93_RS19905	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3D93_RS19910	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
C3D93_RS19920	COG2175	clavaminate synthase activity
C3D93_RS19925	COG1473	amidohydrolase
C3D93_RS19930	COG4608	Belongs to the ABC transporter superfamily
C3D93_RS19935	COG0444	Belongs to the ABC transporter superfamily
C3D93_RS19950	COG0747	negative chemotaxis
C3D93_RS19955	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
C3D93_RS19990	COG0436	Aminotransferase
C3D93_RS19995	COG1278	Cold shock