locus-tag	class	description
C5E97_RS00005	COG0445	tRNA wobble uridine modification
C5E97_RS00010	COG0357	Ribosomal RNA small subunit methyltransferase G
C5E97_RS00015	COG1192	Involved in chromosome partitioning
C5E97_RS00025	COG1475	DNA binding
C5E97_RS00050	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
C5E97_RS00060	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C5E97_RS00070	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
C5E97_RS00075	COG0081	regulation of translation
C5E97_RS00080	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
C5E97_RS00085	COG0222	ribosome binding
C5E97_RS00090	COG0085	RNA polymerase activity
C5E97_RS00095	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
C5E97_RS00135	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS00160	COG1024	Enoyl-CoA hydratase
C5E97_RS00180	COG0752	glycyl-tRNA synthetase alpha subunit
C5E97_RS00185	COG0751	glycine-tRNA ligase activity
C5E97_RS00190	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
C5E97_RS00195	COG0204	Acyl-transferase
C5E97_RS00210	COG0242	peptide deformylase activity
C5E97_RS00250	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C5E97_RS00255	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C5E97_RS00255	COG2813	Specifically methylates the guanine in position
C5E97_RS00270	COG2223	nitrite transmembrane transporter activity
C5E97_RS00280	COG1794	racemase activity, acting on amino acids and derivatives
C5E97_RS00285	COG1126	abc transporter atp-binding protein
C5E97_RS00290	COG0765	amino acid transport
C5E97_RS00295	COG0765	amino acid transport
C5E97_RS00300	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS00365	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C5E97_RS00395	COG0326	Molecular chaperone. Has ATPase activity
C5E97_RS00400	COG0625	glutathione transferase activity
C5E97_RS00415	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C5E97_RS00420	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
C5E97_RS00450	COG0438	transferase activity, transferring glycosyl groups
C5E97_RS00455	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
C5E97_RS00460	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
C5E97_RS00490	COG0859	PFAM glycosyl transferase family 9
C5E97_RS00505	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
C5E97_RS00515	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
C5E97_RS00520	COG1127	ABC transporter
C5E97_RS00540	COG1686	Belongs to the peptidase S11 family
C5E97_RS00550	COG2921	Belongs to the UPF0250 family
C5E97_RS00555	COG0321	lipoyl(octanoyl) transferase activity
C5E97_RS00560	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
C5E97_RS00595	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C5E97_RS00605	COG0018	arginyl-trna synthetase
C5E97_RS00625	COG0395	ABC-type sugar transport system, permease component
C5E97_RS00630	COG1175	transmembrane transport
C5E97_RS00635	COG1653	transport
C5E97_RS00640	COG3842	ATPase activity
C5E97_RS00645	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
C5E97_RS00660	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
C5E97_RS00680	COG1609	Transcriptional regulator
C5E97_RS00690	COG0154	amidase activity
C5E97_RS00695	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C5E97_RS00705	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
C5E97_RS00715	COG0583	DNA-binding transcription factor activity
C5E97_RS00735	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C5E97_RS00750	COG1802	Transcriptional regulator
C5E97_RS00765	COG1024	Enoyl-CoA hydratase
C5E97_RS00775	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS00790	COG1984	allophanate hydrolase subunit 2
C5E97_RS00795	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
C5E97_RS00805	COG0583	DNA-binding transcription factor activity
C5E97_RS00810	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C5E97_RS00820	COG5002	protein histidine kinase activity
C5E97_RS00830	COG5002	protein histidine kinase activity
C5E97_RS00835	COG0745	RESPONSE REGULATOR receiver
C5E97_RS00840	COG2226	methyltransferase
C5E97_RS00855	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
C5E97_RS00875	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
C5E97_RS00885	COG0513	Belongs to the DEAD box helicase family
C5E97_RS00890	COG1280	lysine exporter protein (LysE YggA)
C5E97_RS00895	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
C5E97_RS00935	COG1054	Belongs to the UPF0176 family
C5E97_RS00940	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C5E97_RS00940	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C5E97_RS00950	COG0489	protein tyrosine kinase activity
C5E97_RS00965	COG0717	Belongs to the dCTP deaminase family
C5E97_RS00995	COG2081	HI0933 family
C5E97_RS01005	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
C5E97_RS01015	COG0404	The glycine cleavage system catalyzes the degradation of glycine
C5E97_RS01020	COG0509	glycine decarboxylation via glycine cleavage system
C5E97_RS01025	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
C5E97_RS01025	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
C5E97_RS01065	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C5E97_RS01080	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C5E97_RS01090	COG1414	Transcriptional regulator
C5E97_RS01095	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS01100	COG2031	fatty acid transporter
C5E97_RS01105	COG1250	3-hydroxyacyl-CoA dehydrogenase
C5E97_RS01115	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
C5E97_RS01120	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
C5E97_RS01130	COG4257	antibiotic catabolic process
C5E97_RS01155	COG1012	belongs to the aldehyde dehydrogenase family
C5E97_RS01160	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
C5E97_RS01165	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C5E97_RS01190	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS01200	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C5E97_RS01210	COG2188	Transcriptional regulator
C5E97_RS01215	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C5E97_RS01240	COG0617	tRNA 3'-terminal CCA addition
C5E97_RS01255	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
C5E97_RS01260	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
C5E97_RS01265	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
C5E97_RS01270	COG0586	Pfam SNARE associated Golgi protein
C5E97_RS01275	COG0860	N-Acetylmuramoyl-L-alanine amidase
C5E97_RS01280	COG0802	atpase or kinase
C5E97_RS01285	COG0114	fumarate hydratase activity
C5E97_RS01295	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS01305	COG0405	Gamma-glutamyltransferase
C5E97_RS01310	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS01345	COG1294	oxidase, subunit
C5E97_RS01355	COG4988	ABC transporter
C5E97_RS01360	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
C5E97_RS01410	COG2969	positive regulation of protein catabolic process
C5E97_RS01415	COG0625	glutathione transferase activity
C5E97_RS01420	COG2857	Cytochrome c1
C5E97_RS01425	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
C5E97_RS01430	COG0723	plastoquinol--plastocyanin reductase activity
C5E97_RS01435	COG1970	mechanosensitive ion channel activity
C5E97_RS01440	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
C5E97_RS01455	COG2808	Putative FMN-binding domain
C5E97_RS01460	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C5E97_RS01465	COG0747	negative chemotaxis
C5E97_RS01470	COG0657	acetylesterase activity
C5E97_RS01480	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C5E97_RS01485	COG2207	Transcriptional regulator
C5E97_RS01490	COG0129	dihydroxy-acid dehydratase activity
C5E97_RS01495	COG2814	Major facilitator Superfamily
C5E97_RS01500	COG0583	DNA-binding transcription factor activity
C5E97_RS01510	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
C5E97_RS01580	COG1024	Enoyl-CoA hydratase
C5E97_RS01585	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS01610	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
C5E97_RS01615	COG0352	thiamine-phosphate diphosphorylase activity
C5E97_RS01630	COG1678	Uncharacterized ACR, COG1678
C5E97_RS01635	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
C5E97_RS01640	COG0540	Belongs to the ATCase OTCase family
C5E97_RS01655	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C5E97_RS01665	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C5E97_RS01700	COG1234	tRNA 3'-trailer cleavage
C5E97_RS01720	COG3064	Membrane
C5E97_RS01750	COG1683	Conserved Protein
C5E97_RS01755	COG1120	ATPase activity
C5E97_RS01760	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C5E97_RS01765	COG4558	Periplasmic binding protein
C5E97_RS01770	COG3720	iron ion transport
C5E97_RS01780	COG3712	iron ion homeostasis
C5E97_RS01785	COG1595	DNA-templated transcription, initiation
C5E97_RS01820	COG1802	Transcriptional regulator
C5E97_RS01830	COG3069	C4-dicarboxylate transmembrane transporter activity
C5E97_RS01840	COG1012	belongs to the aldehyde dehydrogenase family
C5E97_RS01875	COG2860	membrane
C5E97_RS01880	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C5E97_RS01885	COG0708	Exodeoxyribonuclease III
C5E97_RS01890	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
C5E97_RS01895	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
C5E97_RS01900	COG0154	amidase activity
C5E97_RS01905	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
C5E97_RS01910	COG1077	Cell shape determining protein MreB Mrl
C5E97_RS01915	COG1792	Involved in formation and maintenance of cell shape
C5E97_RS01925	COG0768	penicillin binding
C5E97_RS01930	COG0772	Belongs to the SEDS family
C5E97_RS01935	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
C5E97_RS01940	COG0471	metal ion transport
C5E97_RS01945	COG1309	transcriptional regulator
C5E97_RS01955	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C5E97_RS01970	COG2823	Periplasmic or secreted lipoprotein
C5E97_RS01975	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
C5E97_RS01990	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
C5E97_RS02010	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS02020	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS02040	COG0492	ferredoxin-NADP+ reductase activity
C5E97_RS02050	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS02055	COG1024	Enoyl-CoA hydratase
C5E97_RS02055	COG1250	3-hydroxyacyl-CoA dehydrogenase
C5E97_RS02060	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS02065	COG0028	Belongs to the TPP enzyme family
C5E97_RS02090	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS02105	COG0697	spore germination
C5E97_RS02135	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
C5E97_RS02140	COG0463	Glycosyl transferase, family 2
C5E97_RS02155	COG0786	glutamate:sodium symporter activity
C5E97_RS02165	COG2031	fatty acid transporter
C5E97_RS02180	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C5E97_RS02195	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
C5E97_RS02210	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C5E97_RS02220	COG1285	pathogenesis
C5E97_RS02225	COG1253	flavin adenine dinucleotide binding
C5E97_RS02230	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS02235	COG1024	Enoyl-CoA hydratase
C5E97_RS02240	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS02245	COG0583	DNA-binding transcription factor activity
C5E97_RS02250	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS02260	COG0183	Belongs to the thiolase family
C5E97_RS02280	COG0583	DNA-binding transcription factor activity
C5E97_RS02285	COG1278	Cold shock
C5E97_RS02295	COG1802	Transcriptional regulator
C5E97_RS02300	COG1012	belongs to the aldehyde dehydrogenase family
C5E97_RS02305	COG2031	fatty acid transporter
C5E97_RS02310	COG1017	nitric oxide dioxygenase activity
C5E97_RS02310	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C5E97_RS02315	COG0251	oxidation-reduction process
C5E97_RS02335	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS02345	COG0583	DNA-binding transcription factor activity
C5E97_RS02350	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS02365	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
C5E97_RS02370	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
C5E97_RS02375	COG0546	phosphoglycolate phosphatase activity
C5E97_RS02385	COG1530	ribonuclease E activity
C5E97_RS02405	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
C5E97_RS02410	COG0159	tryptophan synthase activity
C5E97_RS02415	COG0133	tryptophan synthase activity
C5E97_RS02425	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C5E97_RS02430	COG3228	Belongs to the MtfA family
C5E97_RS02440	COG0251	oxidation-reduction process
C5E97_RS02445	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
C5E97_RS02450	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
C5E97_RS02465	COG2878	Part of a membrane complex involved in electron transport
C5E97_RS02470	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
C5E97_RS02505	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C5E97_RS02525	COG1268	BioY protein
C5E97_RS02530	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
C5E97_RS02535	COG1122	ATPase activity
C5E97_RS02540	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C5E97_RS02555	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C5E97_RS02560	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
C5E97_RS02570	COG1196	nuclear chromosome segregation
C5E97_RS02575	COG0477	Major facilitator Superfamily
C5E97_RS02580	COG1573	uracil-dna glycosylase
C5E97_RS02585	COG1214	PFAM Peptidase M22, glycoprotease
C5E97_RS02605	COG0450	alkyl hydroperoxide reductase
C5E97_RS02610	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C5E97_RS02620	COG2223	nitrite transmembrane transporter activity
C5E97_RS02630	COG2186	Transcriptional regulator
C5E97_RS02650	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
C5E97_RS02660	COG0583	DNA-binding transcription factor activity
C5E97_RS02670	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C5E97_RS02675	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
C5E97_RS02680	COG0137	argininosuccinate synthase activity
C5E97_RS02685	COG3158	transport of potassium into the cell
C5E97_RS02690	COG0642	Histidine kinase
C5E97_RS02720	COG0776	regulation of translation
C5E97_RS02725	COG3128	pkhd-type hydroxylase
C5E97_RS02735	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C5E97_RS02740	COG0557	exoribonuclease II activity
C5E97_RS02765	COG0679	Auxin Efflux Carrier
C5E97_RS02770	COG2391	methyltransferase activity
C5E97_RS02775	COG0069	glutamate synthase activity
C5E97_RS02785	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C5E97_RS02795	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
C5E97_RS02835	COG3706	GGDEF domain
C5E97_RS02855	COG1053	succinate dehydrogenase
C5E97_RS02860	COG0583	DNA-binding transcription factor activity
C5E97_RS02875	COG1053	succinate dehydrogenase
C5E97_RS02895	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
C5E97_RS02900	COG0459	protein refolding
C5E97_RS02905	COG3468	outer membrane autotransporter barrel domain protein
C5E97_RS02920	COG1252	NADH dehydrogenase
C5E97_RS02925	COG0284	orotidine-5'-phosphate decarboxylase activity
C5E97_RS02930	COG1058	Belongs to the CinA family
C5E97_RS02930	COG1546	Belongs to the CinA family
C5E97_RS02935	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
C5E97_RS02945	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C5E97_RS02950	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
C5E97_RS02990	COG3639	organic phosphonate transmembrane transporter activity
C5E97_RS02995	COG3639	organic phosphonate transmembrane transporter activity
C5E97_RS03015	COG0742	ribosomal rna small subunit methyltransferase
C5E97_RS03020	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
C5E97_RS03025	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
C5E97_RS03030	COG3135	benzoate transporter
C5E97_RS03045	COG0640	Transcriptional regulator
C5E97_RS03075	COG4172	Belongs to the ABC transporter superfamily
C5E97_RS03080	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS03085	COG0601	transmembrane transport
C5E97_RS03095	COG0281	malic enzyme
C5E97_RS03095	COG0280	phosphate acetyltransferase
C5E97_RS03155	COG0583	DNA-binding transcription factor activity
C5E97_RS03170	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
C5E97_RS03175	COG0167	dihydroorotate dehydrogenase activity
C5E97_RS03195	COG1414	Transcriptional regulator
C5E97_RS03200	COG1546	Belongs to the CinA family
C5E97_RS03200	COG1058	Belongs to the CinA family
C5E97_RS03220	COG0513	Belongs to the DEAD box helicase family
C5E97_RS03250	COG0429	hydrolase of the alpha beta-hydrolase fold
C5E97_RS03255	COG4783	chaperone-mediated protein folding
C5E97_RS03270	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C5E97_RS03295	COG0006	proline dipeptidase activity
C5E97_RS03305	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C5E97_RS03325	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
C5E97_RS03330	COG0632	four-way junction helicase activity
C5E97_RS03345	COG2255	four-way junction helicase activity
C5E97_RS03350	COG0514	ATP-dependent DNA helicase (RecQ)
C5E97_RS03365	COG0288	reversible hydration of carbon dioxide
C5E97_RS03370	COG0154	amidase activity
C5E97_RS03380	COG4211	Belongs to the binding-protein-dependent transport system permease family
C5E97_RS03410	COG1464	Belongs to the NlpA lipoprotein family
C5E97_RS03550	COG1196	nuclear chromosome segregation
C5E97_RS03625	COG2135	peptidase activity
C5E97_RS03640	COG0494	nUDIX hydrolase
C5E97_RS03645	COG0442	prolyl-tRNA aminoacylation
C5E97_RS03650	COG0824	Thioesterase
C5E97_RS03655	COG0811	peptide transport
C5E97_RS03660	COG0848	biopolymer transport protein
C5E97_RS03670	COG0823	Involved in the tonB-independent uptake of proteins
C5E97_RS03685	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C5E97_RS03690	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
C5E97_RS03725	COG0700	Nucleoside recognition
C5E97_RS03730	COG0469	pyruvate kinase activity
C5E97_RS03735	COG1929	Belongs to the glycerate kinase type-1 family
C5E97_RS03740	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
C5E97_RS03745	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C5E97_RS03750	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
C5E97_RS03760	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
C5E97_RS03770	COG2154	pterin-4-alpha-carbinolamine dehydratase
C5E97_RS03795	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C5E97_RS03800	COG0154	amidase activity
C5E97_RS03810	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS03815	COG0601	transmembrane transport
C5E97_RS03820	COG0747	negative chemotaxis
C5E97_RS03840	COG0019	diaminopimelate decarboxylase activity
C5E97_RS03855	COG2353	YceI-like domain
C5E97_RS03860	COG4774	siderophore transport
C5E97_RS03865	COG3712	iron ion homeostasis
C5E97_RS03910	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
C5E97_RS03915	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
C5E97_RS03920	COG0211	Belongs to the bacterial ribosomal protein bL27 family
C5E97_RS03925	COG0261	This protein binds to 23S rRNA in the presence of protein L20
C5E97_RS03935	COG0142	geranyltranstransferase activity
C5E97_RS03945	COG0583	DNA-binding transcription factor activity
C5E97_RS03955	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
C5E97_RS03960	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C5E97_RS03980	COG2994	toxin metabolic process
C5E97_RS03990	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
C5E97_RS03995	COG2274	protein secretion by the type I secretion system
C5E97_RS04000	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C5E97_RS04005	COG1538	Outer membrane efflux protein
C5E97_RS04025	COG0765	amino acid transport
C5E97_RS04030	COG1126	abc transporter atp-binding protein
C5E97_RS04050	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS04060	COG1802	Transcriptional regulator
C5E97_RS04070	COG1802	Transcriptional regulator
C5E97_RS04080	COG0318	PFAM AMP-dependent synthetase and ligase
C5E97_RS04090	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS04110	COG0028	Belongs to the TPP enzyme family
C5E97_RS04130	COG0308	aminopeptidase N
C5E97_RS04135	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
C5E97_RS04150	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
C5E97_RS04155	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
C5E97_RS04160	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
C5E97_RS04165	COG0560	Phosphoserine phosphatase
C5E97_RS04170	COG0583	DNA-binding transcription factor activity
C5E97_RS04175	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS04180	COG0028	Belongs to the TPP enzyme family
C5E97_RS04195	COG4774	siderophore transport
C5E97_RS04200	COG4774	siderophore transport
C5E97_RS04210	COG1007	ATP synthesis coupled electron transport
C5E97_RS04225	COG0713	ATP synthesis coupled electron transport
C5E97_RS04235	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C5E97_RS04240	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
C5E97_RS04245	COG1034	ATP synthesis coupled electron transport
C5E97_RS04255	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
C5E97_RS04260	COG0649	NAD binding
C5E97_RS04265	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C5E97_RS04270	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C5E97_RS04275	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C5E97_RS04280	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C5E97_RS04310	COG0671	phosphoesterase, PA-phosphatase related
C5E97_RS04320	COG1597	lipid kinase activity
C5E97_RS04325	COG0583	DNA-binding transcription factor activity
C5E97_RS04330	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C5E97_RS04340	COG1733	regulation of RNA biosynthetic process
C5E97_RS04345	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C5E97_RS04350	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C5E97_RS04365	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
C5E97_RS04385	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C5E97_RS04405	COG3608	succinylglutamate desuccinylase aspartoacylase
C5E97_RS04410	COG0626	cystathionine gamma-synthase activity
C5E97_RS04415	COG0583	DNA-binding transcription factor activity
C5E97_RS04450	COG3799	methylaspartate ammonia-lyase activity
C5E97_RS04460	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C5E97_RS04470	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C5E97_RS04475	COG0149	triose-phosphate isomerase activity
C5E97_RS04495	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C5E97_RS04510	COG1185	polyribonucleotide nucleotidyltransferase activity
C5E97_RS04515	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
C5E97_RS04530	COG1183	phosphatidylcholine synthase activity
C5E97_RS04535	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
C5E97_RS04540	COG0440	acetolactate synthase activity
C5E97_RS04545	COG0028	Belongs to the TPP enzyme family
C5E97_RS04560	COG5265	(ABC) transporter
C5E97_RS04565	COG0500	methyltransferase
C5E97_RS04585	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
C5E97_RS04605	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
C5E97_RS04615	COG0511	ligase activity, forming carbon-carbon bonds
C5E97_RS04640	COG2188	Transcriptional regulator
C5E97_RS04645	COG0439	Biotin carboxylase
C5E97_RS04695	COG5265	(ABC) transporter
C5E97_RS04705	COG0667	Aldo Keto reductase
C5E97_RS04720	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C5E97_RS04760	COG0583	DNA-binding transcription factor activity
C5E97_RS04795	COG2814	Major facilitator Superfamily
C5E97_RS04805	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
C5E97_RS04820	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
C5E97_RS04830	COG0287	Prephenate dehydrogenase
C5E97_RS04835	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
C5E97_RS04840	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
C5E97_RS04860	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
C5E97_RS04865	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
C5E97_RS04870	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C5E97_RS04875	COG1596	polysaccharide export
C5E97_RS04875	COG1555	photosystem II stabilization
C5E97_RS04890	COG2951	lytic endotransglycosylase activity
C5E97_RS04895	COG0123	including yeast histone deacetylase and acetoin utilization protein
C5E97_RS04910	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS04915	COG0450	alkyl hydroperoxide reductase
C5E97_RS04935	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
C5E97_RS04970	COG0335	large ribosomal subunit rRNA binding
C5E97_RS04985	COG0667	Aldo Keto reductase
C5E97_RS05000	COG3161	chorismate lyase activity
C5E97_RS05005	COG1187	pseudouridine synthase activity
C5E97_RS05035	COG1999	signal sequence binding
C5E97_RS05040	COG0339	signal peptide processing
C5E97_RS05045	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
C5E97_RS05050	COG4566	intracellular signal transduction
C5E97_RS05060	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
C5E97_RS05065	COG0508	dehydrogenase complex catalyzes the overall conversion of
C5E97_RS05070	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C5E97_RS05075	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
C5E97_RS05085	COG1385	rRNA (uridine-N3-)-methyltransferase activity
C5E97_RS05090	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
C5E97_RS05095	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C5E97_RS05100	COG0126	phosphoglycerate kinase activity
C5E97_RS05105	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
C5E97_RS05110	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
C5E97_RS05125	COG0625	glutathione transferase activity
C5E97_RS05155	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
C5E97_RS05165	COG0521	Mo-molybdopterin cofactor biosynthetic process
C5E97_RS05175	COG0739	heme binding
C5E97_RS05185	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
C5E97_RS05220	COG0745	RESPONSE REGULATOR receiver
C5E97_RS05235	COG0840	transmembrane signaling receptor activity
C5E97_RS05245	COG2201	protein-glutamate methylesterase activity
C5E97_RS05250	COG0745	RESPONSE REGULATOR receiver
C5E97_RS05255	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
C5E97_RS05280	COG0667	Aldo Keto reductase
C5E97_RS05290	COG4535	Mg2 and Co2 transporter CorC
C5E97_RS05295	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
C5E97_RS05300	COG1702	phosphate starvation-inducible protein PhoH
C5E97_RS05305	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
C5E97_RS05320	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C5E97_RS05325	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C5E97_RS05330	COG1862	Preprotein translocase
C5E97_RS05335	COG0343	queuine tRNA-ribosyltransferase activity
C5E97_RS05340	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
C5E97_RS05345	COG2027	D-alanyl-D-alanine carboxypeptidase
C5E97_RS05350	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
C5E97_RS05380	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
C5E97_RS05380	COG1648	precorrin-2 dehydrogenase activity
C5E97_RS05405	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
C5E97_RS05410	COG0741	lytic transglycosylase activity
C5E97_RS05420	COG0436	Aminotransferase
C5E97_RS05430	COG0280	phosphate acetyltransferase
C5E97_RS05430	COG0281	malic enzyme
C5E97_RS05440	COG2732	(Barnase) inhibitor
C5E97_RS05455	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
C5E97_RS05480	COG0248	Ppx GppA phosphatase
C5E97_RS05490	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
C5E97_RS05500	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C5E97_RS05505	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
C5E97_RS05510	COG1534	Rna-binding protein
C5E97_RS05540	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C5E97_RS05555	COG1295	ribonuclease BN
C5E97_RS05565	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
C5E97_RS05570	COG0745	RESPONSE REGULATOR receiver
C5E97_RS05575	COG2205	protein histidine kinase activity
C5E97_RS05610	COG1022	Amp-dependent synthetase and ligase
C5E97_RS05625	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
C5E97_RS05630	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS05640	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
C5E97_RS05655	COG1136	(ABC) transporter
C5E97_RS05660	COG0084	hydrolase, TatD family'
C5E97_RS05685	COG0658	competence protein
C5E97_RS05685	COG2333	competence protein COMEC
C5E97_RS05695	COG0613	PHP domain protein
C5E97_RS05715	COG3539	Fimbrial protein
C5E97_RS05720	COG0280	phosphate acetyltransferase
C5E97_RS05720	COG0281	malic enzyme
C5E97_RS05730	COG1522	sequence-specific DNA binding
C5E97_RS05740	COG0567	Dehydrogenase, E1 component
C5E97_RS05745	COG0508	dehydrogenase complex catalyzes the overall conversion of
C5E97_RS05750	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C5E97_RS05755	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
C5E97_RS05760	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS05765	COG0583	DNA-binding transcription factor activity
C5E97_RS05775	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS05800	COG0180	Tryptophanyl-tRNA synthetase
C5E97_RS05805	COG2183	response to ionizing radiation
C5E97_RS05810	COG1199	ATP-dependent helicase activity
C5E97_RS05820	COG0564	pseudouridine synthase activity
C5E97_RS05830	COG3243	poly(R)-hydroxyalkanoic acid synthase
C5E97_RS05835	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS05840	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
C5E97_RS05855	COG0672	)-iron permease
C5E97_RS05895	COG0583	DNA-binding transcription factor activity
C5E97_RS05905	COG2814	Major facilitator Superfamily
C5E97_RS05920	COG1619	proteins homologs of microcin C7 resistance protein MccF
C5E97_RS05935	COG2084	Dehydrogenase
C5E97_RS05940	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS05965	COG2988	succinylglutamate desuccinylase activity
C5E97_RS05990	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C5E97_RS05995	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C5E97_RS05995	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
C5E97_RS06000	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C5E97_RS06005	COG0047	phosphoribosylformylglycinamidine synthase activity
C5E97_RS06005	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
C5E97_RS06010	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
C5E97_RS06010	COG3210	domain, Protein
C5E97_RS06010	COG3064	Membrane
C5E97_RS06040	COG0235	Class ii aldolase
C5E97_RS06045	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C5E97_RS06050	COG0720	synthase
C5E97_RS06055	COG0602	queuosine metabolic process
C5E97_RS06080	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C5E97_RS06115	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS06140	COG3842	ATPase activity
C5E97_RS06150	COG0395	ABC-type sugar transport system, permease component
C5E97_RS06180	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C5E97_RS06185	COG0420	3'-5' exonuclease activity
C5E97_RS06230	COG0518	GMP synthase (glutamine-hydrolyzing) activity
C5E97_RS06230	COG0519	Catalyzes the synthesis of GMP from XMP
C5E97_RS06245	COG3550	peptidyl-serine autophosphorylation
C5E97_RS06255	COG0477	Major facilitator Superfamily
C5E97_RS06270	COG1228	amidohydrolase
C5E97_RS06280	COG1116	anion transmembrane transporter activity
C5E97_RS06285	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS06320	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
C5E97_RS06345	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
C5E97_RS06375	COG2814	Major facilitator Superfamily
C5E97_RS06390	COG1280	lysine exporter protein (LysE YggA)
C5E97_RS06410	COG0747	negative chemotaxis
C5E97_RS06415	COG0601	transmembrane transport
C5E97_RS06420	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS06425	COG4172	Belongs to the ABC transporter superfamily
C5E97_RS06430	COG1609	Transcriptional regulator
C5E97_RS06460	COG0586	Pfam SNARE associated Golgi protein
C5E97_RS06475	COG0500	methyltransferase
C5E97_RS06490	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C5E97_RS06500	COG0756	dUTP diphosphatase activity
C5E97_RS06510	COG0291	Belongs to the bacterial ribosomal protein bL35 family
C5E97_RS06515	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
C5E97_RS06520	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
C5E97_RS06525	COG0072	phenylalanine-tRNA ligase activity
C5E97_RS06525	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C5E97_RS06530	COG0776	regulation of translation
C5E97_RS06595	COG0540	Belongs to the ATCase OTCase family
C5E97_RS06600	COG2974	May be involved in recombination
C5E97_RS06610	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS06615	COG0583	DNA-binding transcription factor activity
C5E97_RS06635	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS06650	COG3842	ATPase activity
C5E97_RS06655	COG1250	3-hydroxyacyl-CoA dehydrogenase
C5E97_RS06655	COG1024	Enoyl-CoA hydratase
C5E97_RS06675	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
C5E97_RS06680	COG2137	regulation of response to DNA damage stimulus
C5E97_RS06690	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
C5E97_RS06700	COG0045	succinate-CoA ligase (ADP-forming) activity
C5E97_RS06705	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C5E97_RS06710	COG0861	Integral membrane protein TerC family
C5E97_RS06715	COG0861	Integral membrane protein TerC family
C5E97_RS06720	COG0181	hydroxymethylbilane synthase activity
C5E97_RS06780	COG4964	Belongs to the GSP D family
C5E97_RS06805	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
C5E97_RS06815	COG0583	DNA-binding transcription factor activity
C5E97_RS06825	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C5E97_RS06830	COG4311	Sarcosine oxidase, delta subunit
C5E97_RS06835	COG0404	The glycine cleavage system catalyzes the degradation of glycine
C5E97_RS06835	COG0446	pyridine nucleotide-disulphide oxidoreductase
C5E97_RS06870	COG0812	UDP-N-acetylmuramate dehydrogenase activity
C5E97_RS06875	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
C5E97_RS06880	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C5E97_RS06885	COG0735	belongs to the Fur family
C5E97_RS06890	COG0497	DNA recombination
C5E97_RS06895	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
C5E97_RS06900	COG1420	regulation of RNA biosynthetic process
C5E97_RS06905	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
C5E97_RS06915	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
C5E97_RS06925	COG0443	Heat shock 70 kDa protein
C5E97_RS06935	COG0612	Peptidase, M16
C5E97_RS06955	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C5E97_RS07000	COG0745	RESPONSE REGULATOR receiver
C5E97_RS07010	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
C5E97_RS07015	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
C5E97_RS07020	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
C5E97_RS07035	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C5E97_RS07055	COG1193	negative regulation of DNA recombination
C5E97_RS07060	COG0492	ferredoxin-NADP+ reductase activity
C5E97_RS07065	COG1674	ftsk spoiiie
C5E97_RS07070	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
C5E97_RS07075	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
C5E97_RS07080	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
C5E97_RS07105	COG3706	GGDEF domain
C5E97_RS07125	COG2814	Major facilitator Superfamily
C5E97_RS07155	COG3486	L-lysine 6-monooxygenase (NADPH) activity
C5E97_RS07170	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS07180	COG3022	response to hydroperoxide
C5E97_RS07220	COG2197	response regulator
C5E97_RS07225	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
C5E97_RS07230	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
C5E97_RS07235	COG0189	ligase activity
C5E97_RS07245	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C5E97_RS07250	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
C5E97_RS07265	COG2423	ornithine cyclodeaminase activity
C5E97_RS07275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS07280	COG0765	amino acid transport
C5E97_RS07285	COG0765	amino acid transport
C5E97_RS07290	COG1126	abc transporter atp-binding protein
C5E97_RS07345	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
C5E97_RS07355	COG2944	sequence-specific DNA binding
C5E97_RS07365	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
C5E97_RS07370	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
C5E97_RS07375	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
C5E97_RS07380	COG0009	L-threonylcarbamoyladenylate synthase
C5E97_RS07385	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS07390	COG1414	Transcriptional regulator
C5E97_RS07405	COG0765	amino acid transport
C5E97_RS07410	COG1126	abc transporter atp-binding protein
C5E97_RS07415	COG0028	Belongs to the TPP enzyme family
C5E97_RS07430	COG0028	Belongs to the TPP enzyme family
C5E97_RS07435	COG0583	DNA-binding transcription factor activity
C5E97_RS07440	COG4974	Belongs to the 'phage' integrase family
C5E97_RS07445	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
C5E97_RS07450	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
C5E97_RS07465	COG1686	Belongs to the peptidase S11 family
C5E97_RS07475	COG2814	Major facilitator Superfamily
C5E97_RS07485	COG1074	ATP-dependent DNA helicase activity
C5E97_RS07495	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
C5E97_RS07500	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
C5E97_RS07505	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
C5E97_RS07525	COG2321	neutral zinc metallopeptidase
C5E97_RS07530	COG0009	L-threonylcarbamoyladenylate synthase
C5E97_RS07575	COG3360	Dodecin
C5E97_RS07580	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
C5E97_RS07585	COG2850	peptidyl-arginine hydroxylation
C5E97_RS07590	COG3539	Fimbrial protein
C5E97_RS07595	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
C5E97_RS07600	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C5E97_RS07615	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS07620	COG0765	amino acid transport
C5E97_RS07625	COG1126	abc transporter atp-binding protein
C5E97_RS07630	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C5E97_RS07635	COG1758	RNA polymerase activity
C5E97_RS07640	COG0194	GDP metabolic process
C5E97_RS07645	COG3258	Cytochrome c
C5E97_RS07650	COG2863	cytochrome
C5E97_RS07655	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS07660	COG0791	NLP P60 protein
C5E97_RS07665	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
C5E97_RS07685	COG1561	YicC-like family, N-terminal region
C5E97_RS07690	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
C5E97_RS07710	COG2199	diguanylate cyclase activity
C5E97_RS07710	COG2200	EAL domain
C5E97_RS07715	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
C5E97_RS07725	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C5E97_RS07730	COG0174	glutamine synthetase
C5E97_RS07740	COG2204	response regulator
C5E97_RS07745	COG0583	DNA-binding transcription factor activity
C5E97_RS07750	COG1741	Belongs to the pirin family
C5E97_RS07755	COG1741	Belongs to the pirin family
C5E97_RS07765	COG3842	ATPase activity
C5E97_RS07770	COG1178	ABC-type Fe3 transport system permease component
C5E97_RS07775	COG1840	ABC-type Fe3 transport system, periplasmic component
C5E97_RS07785	COG0583	DNA-binding transcription factor activity
C5E97_RS07795	COG0656	L-ascorbic acid biosynthetic process
C5E97_RS07810	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
C5E97_RS07815	COG0583	DNA-binding transcription factor activity
C5E97_RS07830	COG0783	Belongs to the Dps family
C5E97_RS07850	COG0463	Glycosyl transferase, family 2
C5E97_RS07870	COG0438	transferase activity, transferring glycosyl groups
C5E97_RS07885	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
C5E97_RS07910	COG0300	oxidoreductase activity
C5E97_RS07955	COG0861	Integral membrane protein TerC family
C5E97_RS07960	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS07980	COG0714	Associated with various cellular activities
C5E97_RS08015	COG3119	arylsulfatase activity
C5E97_RS08040	COG2197	response regulator
C5E97_RS08050	COG2944	sequence-specific DNA binding
C5E97_RS08060	COG0625	glutathione transferase activity
C5E97_RS08090	COG0179	Fumarylacetoacetate (FAA) hydrolase
C5E97_RS08095	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS08140	COG0431	NADPH-dependent FMN reductase
C5E97_RS08170	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS08175	COG0583	DNA-binding transcription factor activity
C5E97_RS08195	COG2111	Na H antiporter
C5E97_RS08195	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
C5E97_RS08200	COG1006	Multisubunit Na H antiporter MnhC subunit
C5E97_RS08205	COG0651	ATP synthesis coupled electron transport
C5E97_RS08210	COG1863	multisubunit Na H antiporter MnhE subunit
C5E97_RS08215	COG2212	antiporter activity
C5E97_RS08240	COG0590	tRNA wobble adenosine to inosine editing
C5E97_RS08245	COG1619	proteins homologs of microcin C7 resistance protein MccF
C5E97_RS08250	COG1024	Enoyl-CoA hydratase
C5E97_RS08265	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C5E97_RS08270	COG0488	(ABC) transporter
C5E97_RS08305	COG1017	nitric oxide dioxygenase activity
C5E97_RS08305	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C5E97_RS08310	COG1959	2 iron, 2 sulfur cluster binding
C5E97_RS08315	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C5E97_RS08335	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
C5E97_RS08340	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
C5E97_RS08345	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
C5E97_RS08350	COG0084	hydrolase, TatD family'
C5E97_RS08365	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS08375	COG1126	abc transporter atp-binding protein
C5E97_RS08385	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C5E97_RS08400	COG0028	Belongs to the TPP enzyme family
C5E97_RS08410	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
C5E97_RS08410	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C5E97_RS08420	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C5E97_RS08470	COG4336	lyase activity
C5E97_RS08480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS08480	COG2205	protein histidine kinase activity
C5E97_RS08485	COG2197	response regulator
C5E97_RS08505	COG3121	Chaperone
C5E97_RS08510	COG3188	usher protein
C5E97_RS08515	COG3539	Fimbrial protein
C5E97_RS08520	COG2831	hemolysin activation secretion protein
C5E97_RS08535	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C5E97_RS08585	COG0668	transmembrane transport
C5E97_RS08605	COG0483	inositol monophosphate 1-phosphatase activity
C5E97_RS08610	COG1253	flavin adenine dinucleotide binding
C5E97_RS08615	COG1968	undecaprenyl-diphosphatase activity
C5E97_RS08620	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C5E97_RS08635	COG0215	cysteine-tRNA ligase activity
C5E97_RS08645	COG0825	malonyl-CoA metabolic process
C5E97_RS08655	COG0037	tRNA processing
C5E97_RS08660	COG0527	aspartate kinase activity
C5E97_RS08685	COG1250	3-hydroxyacyl-CoA dehydrogenase
C5E97_RS08690	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C5E97_RS08690	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
C5E97_RS08705	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C5E97_RS08710	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
C5E97_RS08715	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS08725	COG0583	DNA-binding transcription factor activity
C5E97_RS08750	COG3842	ATPase activity
C5E97_RS08760	COG1902	pentaerythritol trinitrate reductase activity
C5E97_RS08760	COG0446	pyridine nucleotide-disulphide oxidoreductase
C5E97_RS08765	COG1414	Transcriptional regulator
C5E97_RS08770	COG1832	CoA-binding protein
C5E97_RS08780	COG0251	oxidation-reduction process
C5E97_RS08805	COG1902	pentaerythritol trinitrate reductase activity
C5E97_RS08815	COG1215	transferase activity, transferring glycosyl groups
C5E97_RS08820	COG0726	polysaccharide deacetylase
C5E97_RS08820	COG1649	PFAM Uncharacterised BCR, COG1649
C5E97_RS08840	COG1846	Transcriptional regulator
C5E97_RS08855	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
C5E97_RS08865	COG0556	nucleotide-excision repair
C5E97_RS08870	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
C5E97_RS08880	COG1104	cysteine desulfurase activity
C5E97_RS08885	COG0822	iron-sulfur transferase activity
C5E97_RS08890	COG0316	Belongs to the HesB IscA family
C5E97_RS08895	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
C5E97_RS08900	COG0443	Heat shock 70 kDa protein
C5E97_RS08905	COG0633	Ferredoxin
C5E97_RS08925	COG1024	Enoyl-CoA hydratase
C5E97_RS08940	COG3395	kinase activity
C5E97_RS08960	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
C5E97_RS08970	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C5E97_RS09000	COG0747	negative chemotaxis
C5E97_RS09005	COG0601	transmembrane transport
C5E97_RS09010	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS09015	COG4172	Belongs to the ABC transporter superfamily
C5E97_RS09020	COG0154	amidase activity
C5E97_RS09065	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
C5E97_RS09070	COG0425	Belongs to the sulfur carrier protein TusA family
C5E97_RS09080	COG0228	four-way junction DNA binding
C5E97_RS09085	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
C5E97_RS09090	COG0336	Belongs to the RNA methyltransferase TrmD family
C5E97_RS09095	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
C5E97_RS09120	COG0642	Histidine kinase
C5E97_RS09135	COG0525	valine-tRNA ligase activity
C5E97_RS09140	COG0105	UTP biosynthetic process
C5E97_RS09145	COG0820	rRNA (adenine-C2-)-methyltransferase activity
C5E97_RS09155	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
C5E97_RS09160	COG0124	histidyl-tRNA synthetase
C5E97_RS09165	COG2976	Protein conserved in bacteria
C5E97_RS09170	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C5E97_RS09175	COG1160	GTP binding
C5E97_RS09180	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
C5E97_RS09185	COG1923	regulation of RNA biosynthetic process
C5E97_RS09190	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
C5E97_RS09195	COG0330	HflC and HflK could
C5E97_RS09200	COG0330	HflC and HflK could
C5E97_RS09205	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
C5E97_RS09210	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
C5E97_RS09215	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
C5E97_RS09220	COG0828	Belongs to the bacterial ribosomal protein bS21 family
C5E97_RS09230	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C5E97_RS09265	COG0628	permease
C5E97_RS09270	COG0842	Transport permease protein
C5E97_RS09275	COG1131	(ABC) transporter
C5E97_RS09345	COG0156	8-amino-7-oxononanoate synthase activity
C5E97_RS09355	COG4106	trans-aconitate 2-methyltransferase activity
C5E97_RS09355	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
C5E97_RS09360	COG1380	Effector of murein hydrolase LrgA
C5E97_RS09385	COG3284	Transcriptional regulator
C5E97_RS09390	COG1012	belongs to the aldehyde dehydrogenase family
C5E97_RS09405	COG2733	membrane
C5E97_RS09410	COG0583	DNA-binding transcription factor activity
C5E97_RS09415	COG0384	phenazine biosynthesis protein PhzF
C5E97_RS09420	COG5507	3-demethylubiquinone-9 3-methyltransferase
C5E97_RS09425	COG2169	Transcriptional regulator
C5E97_RS09455	COG0659	secondary active sulfate transmembrane transporter activity
C5E97_RS09480	COG1132	(ABC) transporter
C5E97_RS09530	COG2207	Transcriptional regulator
C5E97_RS09670	COG2346	COG2346, Truncated hemoglobins
C5E97_RS09700	COG0583	DNA-binding transcription factor activity
C5E97_RS09715	COG0183	Belongs to the thiolase family
C5E97_RS09730	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS09735	COG0633	Ferredoxin
C5E97_RS09745	COG1024	Enoyl-CoA hydratase
C5E97_RS09755	COG4638	Rieske (2fe-2S)
C5E97_RS09765	COG0559	Belongs to the binding-protein-dependent transport system permease family
C5E97_RS09785	COG2224	Isocitrate lyase
C5E97_RS09790	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
C5E97_RS09790	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
C5E97_RS09800	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
C5E97_RS09805	COG0322	excinuclease ABC activity
C5E97_RS09810	COG1472	Belongs to the glycosyl hydrolase 3 family
C5E97_RS09815	COG0736	holo-[acyl-carrier-protein] synthase activity
C5E97_RS09820	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
C5E97_RS09830	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C5E97_RS09835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C5E97_RS09860	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
C5E97_RS09875	COG2032	superoxide dismutase activity
C5E97_RS09890	COG1024	Enoyl-CoA hydratase
C5E97_RS09900	COG1802	Transcriptional regulator
C5E97_RS09910	COG0183	Belongs to the thiolase family
C5E97_RS09915	COG1942	4-Oxalocrotonate Tautomerase
C5E97_RS09925	COG4176	ABC-type proline glycine betaine transport system permease component
C5E97_RS09945	COG2814	Major facilitator Superfamily
C5E97_RS09950	COG0227	Belongs to the bacterial ribosomal protein bL28 family
C5E97_RS09955	COG0267	Belongs to the bacterial ribosomal protein bL33 family
C5E97_RS09990	COG2814	Major facilitator Superfamily
C5E97_RS09995	COG0495	leucyl-tRNA aminoacylation
C5E97_RS10010	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
C5E97_RS10020	COG0154	amidase activity
C5E97_RS10025	COG1250	3-hydroxyacyl-CoA dehydrogenase
C5E97_RS10080	COG0427	acetyl-CoA hydrolase
C5E97_RS10085	COG0583	DNA-binding transcription factor activity
C5E97_RS10105	COG0730	response to heat
C5E97_RS10110	COG0697	spore germination
C5E97_RS10145	COG2885	chlorophyll binding
C5E97_RS10175	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
C5E97_RS10180	COG3384	dioxygenase
C5E97_RS10195	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
C5E97_RS10200	COG3474	cytochrome
C5E97_RS10210	COG1595	DNA-templated transcription, initiation
C5E97_RS10225	COG2204	response regulator
C5E97_RS10265	COG4964	Belongs to the GSP D family
C5E97_RS10320	COG1846	Transcriptional regulator
C5E97_RS10325	COG4172	Belongs to the ABC transporter superfamily
C5E97_RS10330	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS10335	COG0601	transmembrane transport
C5E97_RS10340	COG0747	negative chemotaxis
C5E97_RS10350	COG0598	Magnesium transport protein CorA
C5E97_RS10355	COG0210	DNA helicase
C5E97_RS10370	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C5E97_RS10375	COG1012	belongs to the aldehyde dehydrogenase family
C5E97_RS10380	COG0483	inositol monophosphate 1-phosphatase activity
C5E97_RS10385	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
C5E97_RS10395	COG1045	serine acetyltransferase
C5E97_RS10400	COG0166	Belongs to the GPI family
C5E97_RS10415	COG2197	response regulator
C5E97_RS10435	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C5E97_RS10455	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS10460	COG0183	Belongs to the thiolase family
C5E97_RS10470	COG1024	Enoyl-CoA hydratase
C5E97_RS10485	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS10490	COG0583	DNA-binding transcription factor activity
C5E97_RS10495	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
C5E97_RS10500	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
C5E97_RS10505	COG0740	serine-type endopeptidase activity
C5E97_RS10510	COG0544	peptidyl-prolyl cis-trans isomerase activity
C5E97_RS10520	COG1278	Cold shock
C5E97_RS10530	COG1278	Cold shock
C5E97_RS10565	COG2171	N-acyltransferase activity
C5E97_RS10570	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C5E97_RS10575	COG2890	protein-(glutamine-N5) methyltransferase activity
C5E97_RS10580	COG0488	(ABC) transporter
C5E97_RS10585	COG4771	TonB-dependent receptor
C5E97_RS10590	COG0210	DNA helicase
C5E97_RS10610	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
C5E97_RS10615	COG0196	riboflavin kinase activity
C5E97_RS10620	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
C5E97_RS10625	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
C5E97_RS10630	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
C5E97_RS10640	COG1522	sequence-specific DNA binding
C5E97_RS10660	COG2951	lytic endotransglycosylase activity
C5E97_RS10665	COG2833	Protein of unknown function (DUF455)
C5E97_RS10685	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C5E97_RS10685	COG0189	ligase activity
C5E97_RS10690	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C5E97_RS10690	COG1181	Belongs to the D-alanine--D-alanine ligase family
C5E97_RS10695	COG3237	CsbD-like
C5E97_RS10705	COG2823	Periplasmic or secreted lipoprotein
C5E97_RS10720	COG4181	ATPase activity
C5E97_RS10730	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C5E97_RS10735	COG0584	glycerophosphoryl diester phosphodiesterase
C5E97_RS10740	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
C5E97_RS10750	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
C5E97_RS10750	COG0678	peroxiredoxin activity
C5E97_RS10760	COG0789	Transcriptional regulator
C5E97_RS10765	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
C5E97_RS10795	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
C5E97_RS10800	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
C5E97_RS10810	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
C5E97_RS10815	COG2252	PERMEase
C5E97_RS10825	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C5E97_RS10855	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C5E97_RS10860	COG2358	TRAP transporter, solute receptor (TAXI family
C5E97_RS10895	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C5E97_RS10900	COG1366	Belongs to the anti-sigma-factor antagonist family
C5E97_RS10905	COG2172	sigma factor antagonist activity
C5E97_RS10910	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C5E97_RS10920	COG2208	phosphoserine phosphatase activity
C5E97_RS10920	COG2770	Histidine kinase
C5E97_RS10945	COG1595	DNA-templated transcription, initiation
C5E97_RS10960	COG4792	protein secretion
C5E97_RS10965	COG4791	protein targeting
C5E97_RS10970	COG4794	Type iii secretion
C5E97_RS10975	COG4790	Type iii secretion
C5E97_RS11010	COG4669	(LipO)protein
C5E97_RS11075	COG4789	Type iii secretion
C5E97_RS11105	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C5E97_RS11110	COG0840	transmembrane signaling receptor activity
C5E97_RS11115	COG2233	PERMEase
C5E97_RS11140	COG1840	ABC-type Fe3 transport system, periplasmic component
C5E97_RS11145	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C5E97_RS11150	COG1178	ABC-type Fe3 transport system permease component
C5E97_RS11155	COG3842	ATPase activity
C5E97_RS11160	COG0583	DNA-binding transcription factor activity
C5E97_RS11180	COG0501	Belongs to the peptidase M48B family
C5E97_RS11190	COG0697	spore germination
C5E97_RS11200	COG1846	Transcriptional regulator
C5E97_RS11210	COG1566	PFAM secretion protein HlyD family protein
C5E97_RS11215	COG2814	Major facilitator Superfamily
C5E97_RS11220	COG0473	3-isopropylmalate dehydrogenase activity
C5E97_RS11230	COG0747	negative chemotaxis
C5E97_RS11240	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS11255	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C5E97_RS11280	COG1012	belongs to the aldehyde dehydrogenase family
C5E97_RS11290	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C5E97_RS11295	COG1115	amino acid carrier protein
C5E97_RS11300	COG0433	COG0433 Predicted ATPase
C5E97_RS11305	COG0217	transcriptional regulatory protein
C5E97_RS11310	COG0151	Belongs to the GarS family
C5E97_RS11315	COG0408	coproporphyrinogen oxidase activity
C5E97_RS11320	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
C5E97_RS11325	COG0799	negative regulation of ribosome biogenesis
C5E97_RS11330	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
C5E97_RS11335	COG0424	maF-like protein
C5E97_RS11340	COG3468	outer membrane autotransporter barrel domain protein
C5E97_RS11380	COG1530	ribonuclease E activity
C5E97_RS11385	COG0077	Prephenate dehydratase
C5E97_RS11400	COG1132	(ABC) transporter
C5E97_RS11405	COG0859	PFAM glycosyl transferase family 9
C5E97_RS11430	COG2194	sulfuric ester hydrolase activity
C5E97_RS11435	COG0438	transferase activity, transferring glycosyl groups
C5E97_RS11440	COG0463	Glycosyl transferase, family 2
C5E97_RS11445	COG0726	polysaccharide deacetylase
C5E97_RS11450	COG0438	transferase activity, transferring glycosyl groups
C5E97_RS11465	COG1643	Atp-dependent helicase
C5E97_RS11470	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
C5E97_RS11470	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C5E97_RS11475	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
C5E97_RS11485	COG0704	Plays a role in the regulation of phosphate uptake
C5E97_RS11490	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
C5E97_RS11495	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS11520	COG1177	transmembrane transport
C5E97_RS11525	COG1176	ABC-type spermidine putrescine transport system, permease component I
C5E97_RS11530	COG3842	ATPase activity
C5E97_RS11535	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
C5E97_RS11550	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
C5E97_RS11555	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C5E97_RS11565	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
C5E97_RS11565	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C5E97_RS11580	COG0372	Belongs to the citrate synthase family
C5E97_RS11585	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
C5E97_RS11590	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
C5E97_RS11595	COG1053	succinate dehydrogenase
C5E97_RS11600	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
C5E97_RS11605	COG2009	succinate dehydrogenase
C5E97_RS11610	COG2188	Transcriptional regulator
C5E97_RS11615	COG0039	L-malate dehydrogenase activity
C5E97_RS11645	COG1981	membrane
C5E97_RS11670	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C5E97_RS11680	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
C5E97_RS11710	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
C5E97_RS11715	COG0148	phosphopyruvate hydratase activity
C5E97_RS11725	COG2877	3-deoxy-8-phosphooctulonate synthase activity
C5E97_RS11730	COG0504	CTP synthase activity
C5E97_RS11755	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS11765	COG0747	negative chemotaxis
C5E97_RS11770	COG4172	Belongs to the ABC transporter superfamily
C5E97_RS11775	COG1446	asparaginase
C5E97_RS11805	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
C5E97_RS11820	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
C5E97_RS11825	COG0697	spore germination
C5E97_RS11830	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C5E97_RS11840	COG3193	protein, possibly involved in utilization of glycolate and propanediol
C5E97_RS11850	COG0791	NLP P60 protein
C5E97_RS11865	COG0583	DNA-binding transcription factor activity
C5E97_RS11880	COG0583	DNA-binding transcription factor activity
C5E97_RS11890	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
C5E97_RS11905	COG0670	Belongs to the BI1 family
C5E97_RS11910	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS11925	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C5E97_RS11935	COG1381	Involved in DNA repair and RecF pathway recombination
C5E97_RS11940	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
C5E97_RS11945	COG0571	ribonuclease III activity
C5E97_RS11950	COG0681	Belongs to the peptidase S26 family
C5E97_RS11955	COG0481	GTPase activity
C5E97_RS11960	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C5E97_RS11985	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C5E97_RS11990	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
C5E97_RS12005	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
C5E97_RS12010	COG0416	fatty acid biosynthetic process
C5E97_RS12015	COG0333	Belongs to the bacterial ribosomal protein bL32 family
C5E97_RS12020	COG1399	metal-binding, possibly nucleic acid-binding protein
C5E97_RS12025	COG0424	maF-like protein
C5E97_RS12035	COG3023	N-Acetylmuramoyl-L-alanine amidase
C5E97_RS12050	COG3022	response to hydroperoxide
C5E97_RS12065	COG0135	phosphoribosylanthranilate isomerase activity
C5E97_RS12080	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C5E97_RS12085	COG0101	tRNA pseudouridine synthase activity
C5E97_RS12095	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
C5E97_RS12100	COG0473	3-isopropylmalate dehydrogenase activity
C5E97_RS12105	COG0066	3-isopropylmalate dehydratase activity
C5E97_RS12110	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
C5E97_RS12120	COG1122	ATPase activity
C5E97_RS12155	COG0243	molybdopterin cofactor binding
C5E97_RS12155	COG3383	formate dehydrogenase (NAD+) activity
C5E97_RS12185	COG0489	protein tyrosine kinase activity
C5E97_RS12190	COG0746	molybdenum cofactor guanylyltransferase activity
C5E97_RS12195	COG0303	'Molybdopterin
C5E97_RS12200	COG1763	Mo-molybdopterin cofactor biosynthetic process
C5E97_RS12210	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
C5E97_RS12215	COG5001	Diguanylate cyclase
C5E97_RS12235	COG3842	ATPase activity
C5E97_RS12245	COG0406	alpha-ribazole phosphatase activity
C5E97_RS12255	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
C5E97_RS12260	COG0505	Belongs to the CarA family
C5E97_RS12265	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
C5E97_RS12300	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
C5E97_RS12305	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS12315	COG2867	negative regulation of translational initiation
C5E97_RS12325	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
C5E97_RS12330	COG3706	GGDEF domain
C5E97_RS12335	COG0330	HflC and HflK could
C5E97_RS12350	COG0518	GMP synthase (glutamine-hydrolyzing) activity
C5E97_RS12350	COG0519	Catalyzes the synthesis of GMP from XMP
C5E97_RS12360	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
C5E97_RS12365	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C5E97_RS12370	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
C5E97_RS12375	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C5E97_RS12385	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
C5E97_RS12390	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C5E97_RS12395	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
C5E97_RS12400	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C5E97_RS12405	COG0750	zinc metalloprotease
C5E97_RS12410	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
C5E97_RS12420	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
C5E97_RS12425	COG0233	cytoplasmic translational termination
C5E97_RS12430	COG0528	UMP kinase activity
C5E97_RS12435	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
C5E97_RS12440	COG0052	Belongs to the universal ribosomal protein uS2 family
C5E97_RS12445	COG0024	Methionine aminopeptidase
C5E97_RS12450	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
C5E97_RS12480	COG0285	dihydrofolate synthase activity
C5E97_RS12515	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
C5E97_RS12525	COG1677	Flagellar hook-basal body complex protein FliE
C5E97_RS12535	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
C5E97_RS12540	COG1317	bacterial-type flagellum organization
C5E97_RS12545	COG1157	protein secretion by the type III secretion system
C5E97_RS12570	COG1580	Controls the rotational direction of flagella during chemotaxis
C5E97_RS12590	COG1338	Plays a role in the flagellum-specific transport system
C5E97_RS12610	COG0840	transmembrane signaling receptor activity
C5E97_RS12615	COG0840	transmembrane signaling receptor activity
C5E97_RS12620	COG0840	transmembrane signaling receptor activity
C5E97_RS12630	COG1256	bacterial-type flagellum assembly
C5E97_RS12640	COG1706	bacterial-type flagellum-dependent cell motility
C5E97_RS12645	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
C5E97_RS12660	COG1749	Flagellar hook protein flgE
C5E97_RS12670	COG1558	bacterial-type flagellum-dependent cell motility
C5E97_RS12675	COG1815	bacterial-type flagellum-dependent cell motility
C5E97_RS12715	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS12720	COG0765	amino acid transport
C5E97_RS12725	COG1126	abc transporter atp-binding protein
C5E97_RS12740	COG4948	Mandelate Racemase Muconate Lactonizing
C5E97_RS12745	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS12755	COG0066	3-isopropylmalate dehydratase activity
C5E97_RS12770	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS12780	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS12790	COG1802	Transcriptional regulator
C5E97_RS12805	COG0583	DNA-binding transcription factor activity
C5E97_RS12825	COG1695	Transcriptional regulator
C5E97_RS12835	COG3568	Endonuclease Exonuclease Phosphatase
C5E97_RS12840	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C5E97_RS12890	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
C5E97_RS12900	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
C5E97_RS12920	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
C5E97_RS12950	COG0667	Aldo Keto reductase
C5E97_RS12965	COG2259	Doxx family
C5E97_RS13005	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS13025	COG0386	Belongs to the glutathione peroxidase family
C5E97_RS13030	COG0625	glutathione transferase activity
C5E97_RS13045	COG0095	Lipoate-protein ligase
C5E97_RS13060	COG0688	phosphatidylethanolamine metabolic process
C5E97_RS13070	COG1464	Belongs to the NlpA lipoprotein family
C5E97_RS13085	COG2363	Small membrane protein
C5E97_RS13110	COG3842	ATPase activity
C5E97_RS13115	COG0395	ABC-type sugar transport system, permease component
C5E97_RS13120	COG1175	transmembrane transport
C5E97_RS13125	COG1653	transport
C5E97_RS13135	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
C5E97_RS13155	COG0559	Belongs to the binding-protein-dependent transport system permease family
C5E97_RS13175	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
C5E97_RS13205	COG2311	Membrane
C5E97_RS13230	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
C5E97_RS13240	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
C5E97_RS13245	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
C5E97_RS13250	COG1760	l-serine dehydratase
C5E97_RS13255	COG1283	sodium-dependent phosphate transmembrane transporter activity
C5E97_RS13260	COG0412	Dienelactone hydrolase
C5E97_RS13275	COG1611	Belongs to the LOG family
C5E97_RS13295	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
C5E97_RS13300	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
C5E97_RS13305	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
C5E97_RS13310	COG0195	Participates in both transcription termination and antitermination
C5E97_RS13310	COG2251	uridine kinase activity
C5E97_RS13315	COG0779	Required for maturation of 30S ribosomal subunits
C5E97_RS13320	COG1187	pseudouridine synthase activity
C5E97_RS13325	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
C5E97_RS13335	COG0583	DNA-binding transcription factor activity
C5E97_RS13345	COG0523	cobalamin synthesis protein
C5E97_RS13365	COG0625	glutathione transferase activity
C5E97_RS13370	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
C5E97_RS13375	COG1047	Peptidyl-prolyl cis-trans
C5E97_RS13380	COG2003	Belongs to the UPF0758 family
C5E97_RS13385	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
C5E97_RS13390	COG3483	tryptophan 2,3-dioxygenase activity
C5E97_RS13395	COG0254	rRNA binding
C5E97_RS13405	COG0534	Mate efflux family protein
C5E97_RS13425	COG2304	oxidoreductase activity
C5E97_RS13445	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS13450	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C5E97_RS13455	COG1562	ergosterol biosynthetic process
C5E97_RS13460	COG1562	ergosterol biosynthetic process
C5E97_RS13465	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
C5E97_RS13465	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
C5E97_RS13470	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
C5E97_RS13480	COG0842	Transport permease protein
C5E97_RS13485	COG1131	(ABC) transporter
C5E97_RS13505	COG1477	protein flavinylation
C5E97_RS13520	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
C5E97_RS13535	COG5564	TIM-barrel signal transduction protein
C5E97_RS13540	COG5441	Belongs to the UPF0261 family
C5E97_RS13550	COG3468	outer membrane autotransporter barrel domain protein
C5E97_RS13570	COG0542	response to heat
C5E97_RS13575	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C5E97_RS13590	COG0494	nUDIX hydrolase
C5E97_RS13595	COG3530	Putative quorum-sensing-regulated virulence factor
C5E97_RS13605	COG1595	DNA-templated transcription, initiation
C5E97_RS13610	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C5E97_RS13645	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS13650	COG0765	amino acid transport
C5E97_RS13655	COG0765	amino acid transport
C5E97_RS13685	COG3539	Fimbrial protein
C5E97_RS13695	COG2050	protein possibly involved in aromatic compounds catabolism
C5E97_RS13700	COG1024	Enoyl-CoA hydratase
C5E97_RS13705	COG1012	belongs to the aldehyde dehydrogenase family
C5E97_RS13725	COG2151	metal-sulfur cluster biosynthetic enzyme
C5E97_RS13730	COG3396	Phenylacetate-CoA oxygenase
C5E97_RS13735	COG3460	Phenylacetate-CoA oxygenase
C5E97_RS13740	COG3396	Phenylacetate-CoA oxygenase
C5E97_RS13745	COG3327	negative regulation of DNA-templated transcription, initiation
C5E97_RS13755	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
C5E97_RS13760	COG0501	Belongs to the peptidase M48B family
C5E97_RS13765	COG1162	GTPase activity
C5E97_RS13780	COG0601	transmembrane transport
C5E97_RS13785	COG0747	negative chemotaxis
C5E97_RS13830	COG0668	transmembrane transport
C5E97_RS13835	COG0165	Argininosuccinate lyase
C5E97_RS13855	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
C5E97_RS13860	COG0303	'Molybdopterin
C5E97_RS13865	COG0521	Mo-molybdopterin cofactor biosynthetic process
C5E97_RS13880	COG0315	cyclic pyranopterin monophosphate synthase activity
C5E97_RS13890	COG0412	Dienelactone hydrolase
C5E97_RS13900	COG0678	peroxiredoxin activity
C5E97_RS13910	COG0697	spore germination
C5E97_RS13915	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
C5E97_RS13940	COG0789	Transcriptional regulator
C5E97_RS13955	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS13965	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
C5E97_RS13970	COG1845	cytochrome c oxidase, subunit III
C5E97_RS13975	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C5E97_RS13985	COG0477	Major facilitator Superfamily
C5E97_RS14020	COG1309	transcriptional regulator
C5E97_RS14025	COG2271	Major facilitator Superfamily
C5E97_RS14060	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
C5E97_RS14060	COG0506	proline dehydrogenase activity
C5E97_RS14060	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
C5E97_RS14070	COG3008	intermembrane lipid transfer
C5E97_RS14070	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C5E97_RS14075	COG2995	paraquat-inducible protein a
C5E97_RS14080	COG0542	response to heat
C5E97_RS14085	COG4953	penicillin-binding protein 1C
C5E97_RS14095	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
C5E97_RS14100	COG1278	Cold shock
C5E97_RS14110	COG0183	Belongs to the thiolase family
C5E97_RS14115	COG0038	chloride channel
C5E97_RS14120	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
C5E97_RS14125	COG1570	exodeoxyribonuclease VII activity
C5E97_RS14135	COG0811	peptide transport
C5E97_RS14140	COG0848	biopolymer transport protein
C5E97_RS14145	COG1663	tetraacyldisaccharide 4'-kinase activity
C5E97_RS14150	COG2835	tetraacyldisaccharide 4'-kinase activity
C5E97_RS14155	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
C5E97_RS14160	COG0563	adenylate kinase activity
C5E97_RS14170	COG0728	peptidoglycan biosynthetic process
C5E97_RS14180	COG0268	Binds directly to 16S ribosomal RNA
C5E97_RS14215	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
C5E97_RS14240	COG0436	Aminotransferase
C5E97_RS14245	COG3737	Protein of unknown function (DUF498/DUF598)
C5E97_RS14250	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
C5E97_RS14255	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
C5E97_RS14260	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
C5E97_RS14270	COG0305	Participates in initiation and elongation during chromosome replication
C5E97_RS14280	COG0359	binds to the 23S rRNA
C5E97_RS14285	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
C5E97_RS14290	COG2965	DNA replication, synthesis of RNA primer
C5E97_RS14295	COG0360	Binds together with S18 to 16S ribosomal RNA
C5E97_RS14300	COG1469	GTP cyclohydrolase I activity
C5E97_RS14305	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
C5E97_RS14310	COG0142	geranyltranstransferase activity
C5E97_RS14315	COG1722	exodeoxyribonuclease VII activity
C5E97_RS14325	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS14345	COG2239	Acts as a magnesium transporter
C5E97_RS14355	COG2855	membrane
C5E97_RS14365	COG1473	amidohydrolase
C5E97_RS14370	COG0318	PFAM AMP-dependent synthetase and ligase
C5E97_RS14395	COG1501	Belongs to the glycosyl hydrolase 31 family
C5E97_RS14400	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
C5E97_RS14405	COG2011	ABC-type metal ion transport system permease component
C5E97_RS14425	COG1454	alcohol dehydrogenase
C5E97_RS14455	COG2186	Transcriptional regulator
C5E97_RS14460	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS14480	COG1175	transmembrane transport
C5E97_RS14485	COG0395	ABC-type sugar transport system, permease component
C5E97_RS14490	COG3842	ATPase activity
C5E97_RS14505	COG1653	transport
C5E97_RS14525	COG2818	Glycosylase
C5E97_RS14530	COG2982	Protein involved in outer membrane biogenesis
C5E97_RS14540	COG1309	transcriptional regulator
C5E97_RS14545	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS14605	COG0583	DNA-binding transcription factor activity
C5E97_RS14610	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
C5E97_RS14615	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C5E97_RS14630	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS14635	COG0477	Major facilitator Superfamily
C5E97_RS14645	COG0583	DNA-binding transcription factor activity
C5E97_RS14650	COG1448	Aminotransferase
C5E97_RS14655	COG1418	mRNA catabolic process
C5E97_RS14680	COG1063	alcohol dehydrogenase
C5E97_RS14700	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS14710	COG0318	PFAM AMP-dependent synthetase and ligase
C5E97_RS14720	COG1522	sequence-specific DNA binding
C5E97_RS14725	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS14730	COG0307	riboflavin synthase, alpha
C5E97_RS14735	COG0154	amidase activity
C5E97_RS14755	COG2807	transmembrane transport
C5E97_RS14760	COG0590	tRNA wobble adenosine to inosine editing
C5E97_RS14770	COG0583	DNA-binding transcription factor activity
C5E97_RS14805	COG0559	Belongs to the binding-protein-dependent transport system permease family
C5E97_RS14810	COG0251	oxidation-reduction process
C5E97_RS14815	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C5E97_RS14825	COG1414	Transcriptional regulator
C5E97_RS14830	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS14845	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS14860	COG1024	Enoyl-CoA hydratase
C5E97_RS14865	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS14870	COG0154	amidase activity
C5E97_RS14910	COG3909	cytochrome
C5E97_RS14915	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
C5E97_RS14920	COG0625	glutathione transferase activity
C5E97_RS14925	COG0730	response to heat
C5E97_RS14930	COG0482	sulfurtransferase activity
C5E97_RS14935	COG0583	DNA-binding transcription factor activity
C5E97_RS14975	COG2819	hydrolase of the alpha beta superfamily
C5E97_RS14980	COG0247	lactate metabolic process
C5E97_RS14985	COG0277	FAD linked oxidase domain protein
C5E97_RS14990	COG0277	FAD linked oxidase domain protein
C5E97_RS14995	COG0277	FAD linked oxidase domain protein
C5E97_RS15000	COG3210	domain, Protein
C5E97_RS15000	COG3064	Membrane
C5E97_RS15000	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
C5E97_RS15000	COG3064	Membrane
C5E97_RS15000	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
C5E97_RS15000	COG3210	domain, Protein
C5E97_RS15005	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C5E97_RS15010	COG0312	modulator of DNA gyrase
C5E97_RS15045	COG1666	GTP binding
C5E97_RS15090	COG3220	belongs to the UPF0276 family
C5E97_RS15110	COG0640	Transcriptional regulator
C5E97_RS15115	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
C5E97_RS15120	COG1845	cytochrome c oxidase, subunit III
C5E97_RS15125	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C5E97_RS15135	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
C5E97_RS15170	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS15175	COG0583	DNA-binding transcription factor activity
C5E97_RS15210	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C5E97_RS15210	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C5E97_RS15225	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
C5E97_RS15230	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
C5E97_RS15240	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
C5E97_RS15255	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
C5E97_RS15260	COG0316	Belongs to the HesB IscA family
C5E97_RS15270	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
C5E97_RS15275	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
C5E97_RS15280	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
C5E97_RS15285	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C5E97_RS15290	COG0312	modulator of DNA gyrase
C5E97_RS15295	COG3028	Belongs to the UPF0307 family
C5E97_RS15310	COG1116	anion transmembrane transporter activity
C5E97_RS15315	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS15320	COG1335	isochorismatase
C5E97_RS15325	COG0346	lactoylglutathione lyase activity
C5E97_RS15330	COG0513	Belongs to the DEAD box helicase family
C5E97_RS15335	COG3069	C4-dicarboxylate transmembrane transporter activity
C5E97_RS15340	COG1802	Transcriptional regulator
C5E97_RS15355	COG1042	CoA-binding domain protein
C5E97_RS15355	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C5E97_RS15355	COG0045	succinate-CoA ligase (ADP-forming) activity
C5E97_RS15360	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C5E97_RS15375	COG1522	sequence-specific DNA binding
C5E97_RS15410	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
C5E97_RS15415	COG1696	Membrane protein involved in D-alanine export
C5E97_RS15440	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C5E97_RS15455	COG0439	Biotin carboxylase
C5E97_RS15460	COG0511	ligase activity, forming carbon-carbon bonds
C5E97_RS15465	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
C5E97_RS15470	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C5E97_RS15475	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C5E97_RS15480	COG3150	esterase
C5E97_RS15485	COG0557	exoribonuclease II activity
C5E97_RS15495	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
C5E97_RS15515	COG1522	sequence-specific DNA binding
C5E97_RS15520	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C5E97_RS15525	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS15545	COG0653	protein targeting
C5E97_RS15550	COG0739	heme binding
C5E97_RS15560	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
C5E97_RS15565	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
C5E97_RS15575	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
C5E97_RS15580	COG1181	Belongs to the D-alanine--D-alanine ligase family
C5E97_RS15585	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C5E97_RS15590	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
C5E97_RS15600	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
C5E97_RS15605	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
C5E97_RS15610	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C5E97_RS15620	COG3116	cell division
C5E97_RS15625	COG0275	rRNA processing
C5E97_RS15630	COG2001	Belongs to the MraZ family
C5E97_RS15640	COG0488	(ABC) transporter
C5E97_RS15645	COG0418	dihydroorotase activity
C5E97_RS15650	COG1473	amidohydrolase
C5E97_RS15700	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C5E97_RS15705	COG4654	Cytochrome c, class I
C5E97_RS15710	COG0129	dihydroxy-acid dehydratase activity
C5E97_RS15715	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
C5E97_RS15765	COG2084	Dehydrogenase
C5E97_RS15785	COG2096	Adenosyltransferase
C5E97_RS15800	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
C5E97_RS15805	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
C5E97_RS15815	COG0523	cobalamin synthesis protein
C5E97_RS15820	COG0735	belongs to the Fur family
C5E97_RS15835	COG0803	Belongs to the bacterial solute-binding protein 9 family
C5E97_RS15845	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
C5E97_RS15855	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
C5E97_RS15865	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
C5E97_RS15870	COG1560	Kdo2-lipid A biosynthetic process
C5E97_RS15880	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
C5E97_RS15895	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
C5E97_RS15900	COG1950	PFAM Membrane protein of
C5E97_RS15915	COG0583	DNA-binding transcription factor activity
C5E97_RS15925	COG0477	Major facilitator Superfamily
C5E97_RS15940	COG0617	tRNA 3'-terminal CCA addition
C5E97_RS15950	COG0513	Belongs to the DEAD box helicase family
C5E97_RS15955	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
C5E97_RS15965	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C5E97_RS15970	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
C5E97_RS16045	COG0405	Gamma-glutamyltransferase
C5E97_RS16055	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C5E97_RS16085	COG1309	transcriptional regulator
C5E97_RS16100	COG0745	RESPONSE REGULATOR receiver
C5E97_RS16150	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
C5E97_RS16175	COG0582	viral genome integration into host DNA
C5E97_RS16180	COG0012	GTP binding
C5E97_RS16190	COG0193	aminoacyl-tRNA hydrolase activity
C5E97_RS16195	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
C5E97_RS16200	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
C5E97_RS16210	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
C5E97_RS16215	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
C5E97_RS16225	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
C5E97_RS16250	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
C5E97_RS16260	COG1368	sulfuric ester hydrolase activity
C5E97_RS16265	COG0642	Histidine kinase
C5E97_RS16270	COG0745	RESPONSE REGULATOR receiver
C5E97_RS16275	COG0277	FAD linked oxidase domain protein
C5E97_RS16290	COG0166	Belongs to the GPI family
C5E97_RS16295	COG0438	transferase activity, transferring glycosyl groups
C5E97_RS16300	COG0438	transferase activity, transferring glycosyl groups
C5E97_RS16315	COG0438	transferase activity, transferring glycosyl groups
C5E97_RS16330	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
C5E97_RS16335	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
C5E97_RS16340	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
C5E97_RS16350	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
C5E97_RS16360	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C5E97_RS16365	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C5E97_RS16375	COG0747	negative chemotaxis
C5E97_RS16380	COG0601	transmembrane transport
C5E97_RS16385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS16405	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
C5E97_RS16410	COG0830	nickel cation binding
C5E97_RS16420	COG0804	urea catabolic process
C5E97_RS16425	COG0832	Belongs to the urease beta subunit family
C5E97_RS16435	COG0831	urea catabolic process
C5E97_RS16440	COG0829	nickel cation binding
C5E97_RS16470	COG2188	Transcriptional regulator
C5E97_RS16495	COG2719	SpoVR family
C5E97_RS16500	COG2718	Belongs to the UPF0229 family
C5E97_RS16520	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS16535	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS16585	COG2030	dehydratase
C5E97_RS16635	COG0328	RNA-DNA hybrid ribonuclease activity
C5E97_RS16640	COG2226	methyltransferase
C5E97_RS16645	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C5E97_RS16650	COG1388	LysM domain
C5E97_RS16650	COG0741	lytic transglycosylase activity
C5E97_RS16670	COG2979	Protein of unknown function (DUF533)
C5E97_RS16705	COG1271	oxidase subunit
C5E97_RS16710	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C5E97_RS16715	COG0850	regulation of cytokinetic process
C5E97_RS16720	COG2894	cell division
C5E97_RS16725	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
C5E97_RS16760	COG0601	transmembrane transport
C5E97_RS16770	COG1215	transferase activity, transferring glycosyl groups
C5E97_RS16785	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
C5E97_RS16795	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C5E97_RS16815	COG0318	PFAM AMP-dependent synthetase and ligase
C5E97_RS16820	COG2188	Transcriptional regulator
C5E97_RS16825	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
C5E97_RS16830	COG2814	Major facilitator Superfamily
C5E97_RS16840	COG0259	pyridoxamine-phosphate oxidase activity
C5E97_RS16845	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C5E97_RS16860	COG0583	DNA-binding transcription factor activity
C5E97_RS16885	COG0134	indole-3-glycerol-phosphate synthase activity
C5E97_RS16890	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C5E97_RS16895	COG0512	Glutamine amidotransferase of anthranilate synthase
C5E97_RS16905	COG0546	phosphoglycolate phosphatase activity
C5E97_RS16910	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C5E97_RS16915	COG2967	ApaG domain
C5E97_RS16920	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
C5E97_RS16925	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C5E97_RS16930	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C5E97_RS16935	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C5E97_RS16945	COG0037	tRNA processing
C5E97_RS16955	COG3634	alkyl hydroperoxide reductase activity
C5E97_RS16960	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C5E97_RS16965	COG1024	Enoyl-CoA hydratase
C5E97_RS16990	COG0356	it plays a direct role in the translocation of protons across the membrane
C5E97_RS17000	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
C5E97_RS17005	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
C5E97_RS17010	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
C5E97_RS17015	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
C5E97_RS17020	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
C5E97_RS17025	COG0355	proton-transporting ATP synthase activity, rotational mechanism
C5E97_RS17035	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
C5E97_RS17040	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
C5E97_RS17045	COG0210	DNA helicase
C5E97_RS17055	COG2195	Cleaves the N-terminal amino acid of tripeptides
C5E97_RS17065	COG4172	Belongs to the ABC transporter superfamily
C5E97_RS17070	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS17075	COG0601	transmembrane transport
C5E97_RS17095	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
C5E97_RS17100	COG1024	Enoyl-CoA hydratase
C5E97_RS17105	COG1024	Enoyl-CoA hydratase
C5E97_RS17160	COG2132	Multicopper oxidase
C5E97_RS17170	COG1250	3-hydroxyacyl-CoA dehydrogenase
C5E97_RS17170	COG1024	Enoyl-CoA hydratase
C5E97_RS17180	COG1414	Transcriptional regulator
C5E97_RS17190	COG0154	amidase activity
C5E97_RS17220	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C5E97_RS17225	COG3568	Endonuclease Exonuclease Phosphatase
C5E97_RS17230	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
C5E97_RS17265	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
C5E97_RS17275	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
C5E97_RS17290	COG1137	ATPase activity
C5E97_RS17305	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
C5E97_RS17310	COG1529	Aldehyde oxidase and xanthine dehydrogenase
C5E97_RS17310	COG2010	Cytochrome c
C5E97_RS17320	COG1660	Displays ATPase and GTPase activities
C5E97_RS17325	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
C5E97_RS17360	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS17370	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
C5E97_RS17375	COG2890	protein-(glutamine-N5) methyltransferase activity
C5E97_RS17380	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
C5E97_RS17385	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
C5E97_RS17435	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS17445	COG0183	Belongs to the thiolase family
C5E97_RS17450	COG1522	sequence-specific DNA binding
C5E97_RS17455	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
C5E97_RS17475	COG1024	Enoyl-CoA hydratase
C5E97_RS17490	COG0604	alcohol dehydrogenase
C5E97_RS17510	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C5E97_RS17520	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS17525	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS17530	COG0277	FAD linked oxidase domain protein
C5E97_RS17540	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS17565	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C5E97_RS17575	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS17580	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS17585	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS17605	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
C5E97_RS17610	COG1024	Enoyl-CoA hydratase
C5E97_RS17615	COG1960	acyl-CoA dehydrogenase activity
C5E97_RS17635	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
C5E97_RS17640	COG0022	dehydrogenase e1 component
C5E97_RS17645	COG1024	Enoyl-CoA hydratase
C5E97_RS17650	COG0508	dehydrogenase complex catalyzes the overall conversion of
C5E97_RS17670	COG0683	leucine binding
C5E97_RS17675	COG0559	Belongs to the binding-protein-dependent transport system permease family
C5E97_RS17680	COG0411	ABC transporter
C5E97_RS17690	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C5E97_RS17705	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS17730	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C5E97_RS17735	COG0793	Belongs to the peptidase S41A family
C5E97_RS17740	COG4942	peptidase
C5E97_RS17745	COG0588	phosphoglycerate mutase activity
C5E97_RS17750	COG1054	Belongs to the UPF0176 family
C5E97_RS17755	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
C5E97_RS17760	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
C5E97_RS17765	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
C5E97_RS17770	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS17785	COG2226	methyltransferase
C5E97_RS17790	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
C5E97_RS17805	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS17810	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
C5E97_RS17835	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
C5E97_RS17860	COG1335	isochorismatase
C5E97_RS17865	COG2309	aminopeptidase activity
C5E97_RS17875	COG3473	Maleate cis-trans isomerase
C5E97_RS17885	COG2068	MobA-Related Protein
C5E97_RS17910	COG2204	response regulator
C5E97_RS17915	COG5000	phosphorelay sensor kinase activity
C5E97_RS17925	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C5E97_RS17925	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
C5E97_RS17935	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
C5E97_RS17970	COG0583	DNA-binding transcription factor activity
C5E97_RS17990	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C5E97_RS17995	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS18010	COG0758	DNA mediated transformation
C5E97_RS18015	COG1522	sequence-specific DNA binding
C5E97_RS18025	COG0242	peptide deformylase activity
C5E97_RS18040	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
C5E97_RS18050	COG0546	phosphoglycolate phosphatase activity
C5E97_RS18070	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
C5E97_RS18075	COG1942	4-Oxalocrotonate Tautomerase
C5E97_RS18080	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C5E97_RS18105	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C5E97_RS18125	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C5E97_RS18130	COG1024	Enoyl-CoA hydratase
C5E97_RS18135	COG1414	Transcriptional regulator
C5E97_RS18140	COG0318	PFAM AMP-dependent synthetase and ligase
C5E97_RS18145	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS18190	COG3422	double-strand break repair
C5E97_RS18195	COG0330	HflC and HflK could
C5E97_RS18205	COG0251	oxidation-reduction process
C5E97_RS18255	COG3723	Recombinational DNA repair protein, rece pathway
C5E97_RS18290	COG0582	viral genome integration into host DNA
C5E97_RS18325	COG0706	membrane insertase activity
C5E97_RS18330	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
C5E97_RS18335	COG0594	ribonuclease P activity
C5E97_RS18340	COG0230	Belongs to the bacterial ribosomal protein bL34 family
C5E97_RS18345	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
C5E97_RS18360	COG1414	Transcriptional regulator
C5E97_RS18365	COG0154	amidase activity
C5E97_RS18380	COG1304	FMN binding
C5E97_RS18430	COG0183	Belongs to the thiolase family
C5E97_RS18435	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
C5E97_RS18450	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C5E97_RS18455	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS18465	COG2358	TRAP transporter, solute receptor (TAXI family
C5E97_RS18475	COG1629	transport
C5E97_RS18480	COG2922	Belongs to the Smg family
C5E97_RS18505	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
C5E97_RS18510	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS18515	COG1028	Short-chain dehydrogenase reductase Sdr
C5E97_RS18520	COG1012	belongs to the aldehyde dehydrogenase family
C5E97_RS18530	COG0028	Belongs to the TPP enzyme family
C5E97_RS18535	COG1522	sequence-specific DNA binding
C5E97_RS18540	COG3781	membrane
C5E97_RS18550	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
C5E97_RS18570	COG4206	TonB-dependent receptor
C5E97_RS18575	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C5E97_RS18580	COG2022	thiamine diphosphate biosynthetic process
C5E97_RS18585	COG0351	phosphomethylpyrimidine kinase
C5E97_RS18590	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
C5E97_RS18605	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
C5E97_RS18615	COG0628	permease
C5E97_RS18625	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C5E97_RS18640	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
C5E97_RS18645	COG0049	tRNA binding
C5E97_RS18650	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
C5E97_RS18655	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
C5E97_RS18660	COG0051	transcription antitermination factor activity, RNA binding
C5E97_RS18665	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
C5E97_RS18670	COG0088	Forms part of the polypeptide exit tunnel
C5E97_RS18675	COG0089	rRNA binding
C5E97_RS18680	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
C5E97_RS18685	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
C5E97_RS18690	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
C5E97_RS18695	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
C5E97_RS18700	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
C5E97_RS18705	COG0255	Belongs to the universal ribosomal protein uL29 family
C5E97_RS18710	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
C5E97_RS18730	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
C5E97_RS18735	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
C5E97_RS18740	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
C5E97_RS18745	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
C5E97_RS18750	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
C5E97_RS18755	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
C5E97_RS18760	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
C5E97_RS18765	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
C5E97_RS18770	COG1841	ribosomal large subunit assembly
C5E97_RS18775	COG0200	Binds to the 23S rRNA
C5E97_RS18780	COG0201	protein transport
C5E97_RS18785	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
C5E97_RS18790	COG0257	Belongs to the bacterial ribosomal protein bL36 family
C5E97_RS18795	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
C5E97_RS18800	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
C5E97_RS18805	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
C5E97_RS18810	COG0202	RNA polymerase activity
C5E97_RS18815	COG0203	ribosomal protein L17
C5E97_RS18820	COG0537	adenosine 5'-monophosphoramidase activity
C5E97_RS18825	COG1324	tolerance protein
C5E97_RS18830	COG4232	protein-disulfide reductase activity
C5E97_RS18845	COG0218	Necessary for normal cell division and for the maintenance of normal septation
C5E97_RS18855	COG1333	cytochrome c biogenesis protein
C5E97_RS18860	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C5E97_RS18875	COG1965	Belongs to the frataxin family
C5E97_RS18885	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
C5E97_RS18890	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
C5E97_RS18895	COG0232	Belongs to the dGTPase family. Type 2 subfamily
C5E97_RS18910	COG2814	Major facilitator Superfamily
C5E97_RS18915	COG0629	single-stranded DNA binding
C5E97_RS18955	COG0402	S-adenosylhomocysteine deaminase activity
C5E97_RS18965	COG0438	transferase activity, transferring glycosyl groups
C5E97_RS18985	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS19010	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
C5E97_RS19035	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C5E97_RS19040	COG1956	GAF domain-containing protein
C5E97_RS19045	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C5E97_RS19060	COG1652	LysM domain
C5E97_RS19090	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C5E97_RS19120	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS19135	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS19150	COG1024	Enoyl-CoA hydratase
C5E97_RS19165	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS19170	COG1309	transcriptional regulator
C5E97_RS19175	COG2816	NAD+ diphosphatase activity
C5E97_RS19180	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C5E97_RS19265	COG2814	Major facilitator Superfamily
C5E97_RS19270	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
C5E97_RS19290	COG1999	signal sequence binding
C5E97_RS19295	COG0109	protoheme IX farnesyltransferase activity
C5E97_RS19335	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C5E97_RS19355	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
C5E97_RS19360	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C5E97_RS19370	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
C5E97_RS19375	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
C5E97_RS19385	COG0067	glutamate synthase
C5E97_RS19385	COG0070	glutamate synthase
C5E97_RS19385	COG0069	glutamate synthase activity
C5E97_RS19395	COG3047	cAMP biosynthetic process
C5E97_RS19405	COG1127	ABC transporter
C5E97_RS19410	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
C5E97_RS19415	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C5E97_RS19420	COG2853	Lipoprotein
C5E97_RS19435	COG0842	Transport permease protein
C5E97_RS19445	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
C5E97_RS19450	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
C5E97_RS19455	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
C5E97_RS19460	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
C5E97_RS19465	COG0131	Imidazoleglycerol-phosphate dehydratase
C5E97_RS19470	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
C5E97_RS19475	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
C5E97_RS19480	COG0107	imidazoleglycerol-phosphate synthase activity
C5E97_RS19485	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
C5E97_RS19490	COG0140	phosphoribosyl-ATP diphosphatase activity
C5E97_RS19495	COG0537	adenosine 5'-monophosphoramidase activity
C5E97_RS19500	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
C5E97_RS19505	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
C5E97_RS19520	COG3181	Tripartite tricarboxylate transporter family receptor
C5E97_RS19555	COG3702	type iv secretory pathway
C5E97_RS19560	COG3451	type IV secretory pathway VirB4
C5E97_RS19575	COG3736	Type IV secretory pathway, component VirB8
C5E97_RS19580	COG3504	Conjugal transfer protein
C5E97_RS19585	COG2948	multi-organism process
C5E97_RS19590	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
C5E97_RS19600	COG0697	spore germination
C5E97_RS19620	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
C5E97_RS19625	COG0747	negative chemotaxis
C5E97_RS19630	COG0601	transmembrane transport
C5E97_RS19635	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C5E97_RS19650	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
C5E97_RS19660	COG0494	nUDIX hydrolase
C5E97_RS19705	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
C5E97_RS19710	COG0237	dephospho-CoA kinase activity
C5E97_RS19715	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
C5E97_RS19730	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
C5E97_RS19735	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
C5E97_RS19745	COG0477	Major facilitator Superfamily
C5E97_RS19750	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
C5E97_RS19765	COG1126	abc transporter atp-binding protein
C5E97_RS19770	COG0765	amino acid transport
C5E97_RS19775	COG4597	amino acid ABC transporter
C5E97_RS19780	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C5E97_RS19785	COG2884	Cell division ATP-binding protein ftsE
C5E97_RS19790	COG2177	Part of the ABC transporter FtsEX involved in
C5E97_RS19795	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
C5E97_RS19805	COG1194	a g-specific adenine glycosylase
C5E97_RS19815	COG2226	methyltransferase
C5E97_RS19825	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS19830	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS19845	COG1024	Enoyl-CoA hydratase
C5E97_RS19865	COG1024	Enoyl-CoA hydratase
C5E97_RS19870	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C5E97_RS19885	COG0753	catalase activity
C5E97_RS19890	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C5E97_RS19895	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
C5E97_RS19905	COG2175	clavaminate synthase activity
C5E97_RS19910	COG1473	amidohydrolase
C5E97_RS19915	COG4608	Belongs to the ABC transporter superfamily
C5E97_RS19920	COG0444	Belongs to the ABC transporter superfamily
C5E97_RS19935	COG0747	negative chemotaxis
C5E97_RS19940	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
C5E97_RS19975	COG0436	Aminotransferase
C5E97_RS19980	COG1278	Cold shock