BAFHLJ01_RS00080	SM00450	Rhodanese Homology Domain
BAFHLJ01_RS00110	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS00115	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BAFHLJ01_RS00175	SM00434	DNA Topoisomerase IV
BAFHLJ01_RS00180	SM00387	Histidine kinase-like ATPases
BAFHLJ01_RS00180	SM00433	TopoisomeraseII
BAFHLJ01_RS00185	SM00563	Phosphate acyltransferases
BAFHLJ01_RS00200	SM00138	Methyltransferase, chemotaxis proteins 
BAFHLJ01_RS00230	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
BAFHLJ01_RS00250	SM00986	Uracil DNA glycosylase superfamily
BAFHLJ01_RS00250	SM00987	UreE urease accessory protein, C-terminal domain 
BAFHLJ01_RS00270	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BAFHLJ01_RS00275	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS00280	SM01091	Transporter associated domain
BAFHLJ01_RS00355	SM00937	BAFHLJ01_RS00355
BAFHLJ01_RS00380	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS00410	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS00420	SM00838	Elongation factor G C-terminus
BAFHLJ01_RS00470	SM00463	Small MutS-related domain
BAFHLJ01_RS00470	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BAFHLJ01_RS00470	SM00534	ATPase domain of DNA mismatch repair MUTS family
BAFHLJ01_RS00500	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BAFHLJ01_RS00510	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS00615	SM00316	Ribosomal protein S1-like RNA-binding domain
BAFHLJ01_RS00625	SM00363	S4 RNA-binding domain
BAFHLJ01_RS00635	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS00650	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS00660	SM00740	BAFHLJ01_RS00660
BAFHLJ01_RS00690	SM01234	BAFHLJ01_RS00690
BAFHLJ01_RS00705	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS00735	SM00957	SecA DEAD-like domain
BAFHLJ01_RS00735	SM00958	SecA preprotein cross-linking domain
BAFHLJ01_RS00765	SM01005	Alanine racemase, C-terminal domain
BAFHLJ01_RS00805	SM00316	Ribosomal protein S1-like RNA-binding domain
BAFHLJ01_RS00815	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS00820	SM00327	von Willebrand factor (vWF) type A domain
BAFHLJ01_RS00825	SM00327	von Willebrand factor (vWF) type A domain
BAFHLJ01_RS00850	SM01228	BAFHLJ01_RS00850
BAFHLJ01_RS00930	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS00980	SM00116	Domain in cystathionine beta-synthase and other proteins.
BAFHLJ01_RS00980	SM01091	Transporter associated domain
BAFHLJ01_RS00985	SM00244	prohibitin homologues
BAFHLJ01_RS00990	SM00244	prohibitin homologues
BAFHLJ01_RS01025	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS01035	SM00853	MutL C terminal dimerisation domain
BAFHLJ01_RS01035	SM01340	BAFHLJ01_RS01035
BAFHLJ01_RS01055	SM00841	Elongation factor P, C-terminal
BAFHLJ01_RS01055	SM01185	BAFHLJ01_RS01055
BAFHLJ01_RS01075	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS01085	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BAFHLJ01_RS01130	SM00357	Cold shock protein domain
BAFHLJ01_RS01130	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS01140	SM00411	bacterial (prokaryotic) histone like domain
BAFHLJ01_RS01250	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS01250	SM00464	Found in ATP-dependent protease La (LON)
BAFHLJ01_RS01270	SM00843	BAFHLJ01_RS01270
BAFHLJ01_RS01290	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS01320	SM01245	BAFHLJ01_RS01320
BAFHLJ01_RS01335	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS01335	SM00962	SRP54-type protein, GTPase domain
BAFHLJ01_RS01460	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS01460	SM01086	C-terminal, D2-small domain, of ClpB protein
BAFHLJ01_RS01475	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS01480	SM00864	Tubulin/FtsZ family, GTPase domain
BAFHLJ01_RS01480	SM00865	Tubulin/FtsZ family, C-terminal domain
BAFHLJ01_RS01485	SM00842	Cell division protein FtsA
BAFHLJ01_RS01540	SM00260	Two component signalling adaptor domain
BAFHLJ01_RS01605	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS01640	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS01645	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS01655	SM01192	BAFHLJ01_RS01655
BAFHLJ01_RS01655	SM01193	BAFHLJ01_RS01655
BAFHLJ01_RS01750	SM01058	CarD-like/TRCF domain
BAFHLJ01_RS01765	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BAFHLJ01_RS01765	SM00245	tail specific protease
BAFHLJ01_RS01780	SM00052	Putative diguanylate phosphodiesterase
BAFHLJ01_RS01810	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS01815	SM00363	S4 RNA-binding domain
BAFHLJ01_RS01835	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BAFHLJ01_RS01865	SM00924	MgtE intracellular N domain
BAFHLJ01_RS01915	SM00663	RNA polymerase I subunit A N-terminus
BAFHLJ01_RS01945	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BAFHLJ01_RS01945	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BAFHLJ01_RS01980	SM00248	ankyrin repeats
BAFHLJ01_RS01995	SM00946	Prolyl-tRNA synthetase, C-terminal
BAFHLJ01_RS02040	SM00477	DNA/RNA non-specific endonuclease
BAFHLJ01_RS02040	SM00892	DNA/RNA non-specific endonuclease
BAFHLJ01_RS02055	SM00138	Methyltransferase, chemotaxis proteins 
BAFHLJ01_RS02080	SM00267	diguanylate cyclase
BAFHLJ01_RS02080	SM00448	cheY-homologous receiver domain
BAFHLJ01_RS02085	SM00387	Histidine kinase-like ATPases
BAFHLJ01_RS02085	SM00388	His Kinase A (phosphoacceptor) domain
BAFHLJ01_RS02085	SM00448	cheY-homologous receiver domain
BAFHLJ01_RS02175	SM00470	ParB-like nuclease domain
BAFHLJ01_RS02185	SM00387	Histidine kinase-like ATPases
BAFHLJ01_RS02185	SM00433	TopoisomeraseII
BAFHLJ01_RS02220	SM00393	Putative single-stranded nucleic acids-binding domain
BAFHLJ01_RS02220	SM01245	BAFHLJ01_RS02220
BAFHLJ01_RS02240	SM00970	Sexual stage antigen s48/45 domain
BAFHLJ01_RS02290	SM00465	GIY-YIG type nucleases (URI domain)
BAFHLJ01_RS02295	SM00060	Fibronectin type 3 domain
BAFHLJ01_RS02300	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS02335	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS02345	SM00562	BAFHLJ01_RS02345
BAFHLJ01_RS02360	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS02410	SM01403	BAFHLJ01_RS02410
BAFHLJ01_RS02430	SM01382	BAFHLJ01_RS02430
BAFHLJ01_RS02430	SM01383	BAFHLJ01_RS02430
BAFHLJ01_RS02445	SM00322	K homology RNA-binding domain
BAFHLJ01_RS02465	SM01374	BAFHLJ01_RS02465
BAFHLJ01_RS02470	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BAFHLJ01_RS02530	SM00662	RNA polymerases D
BAFHLJ01_RS02540	SM00322	K homology RNA-binding domain
BAFHLJ01_RS02540	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BAFHLJ01_RS02555	SM00909	Sporulation and spore germination
BAFHLJ01_RS02585	SM00873	B3/4 domain
BAFHLJ01_RS02585	SM00874	tRNA synthetase B5 domain
BAFHLJ01_RS02595	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BAFHLJ01_RS02600	SM00271	DnaJ molecular chaperone homology domain
BAFHLJ01_RS02665	SM00849	Metallo-beta-lactamase superfamily
BAFHLJ01_RS02695	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS02710	SM00838	Elongation factor G C-terminus
BAFHLJ01_RS02710	SM00889	Elongation factor G, domain IV
BAFHLJ01_RS02720	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS02730	SM01400	BAFHLJ01_RS02730
BAFHLJ01_RS02750	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BAFHLJ01_RS02750	SM00474	3'-5' exonuclease
BAFHLJ01_RS02750	SM00475	5'-3' exonuclease
BAFHLJ01_RS02750	SM00482	DNA polymerase A domain
BAFHLJ01_RS02765	SM00448	cheY-homologous receiver domain
BAFHLJ01_RS02810	SM00387	Histidine kinase-like ATPases
BAFHLJ01_RS02835	SM00260	Two component signalling adaptor domain
BAFHLJ01_RS02845	SM00073	Histidine Phosphotransfer domain
BAFHLJ01_RS02845	SM00260	Two component signalling adaptor domain
BAFHLJ01_RS02845	SM00387	Histidine kinase-like ATPases
BAFHLJ01_RS02845	SM01231	BAFHLJ01_RS02845
BAFHLJ01_RS02860	SM00448	cheY-homologous receiver domain
BAFHLJ01_RS02880	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS02910	SM00481	DNA polymerase alpha chain like domain
BAFHLJ01_RS02920	SM00487	DEAD-like helicases superfamily
BAFHLJ01_RS02920	SM00490	helicase superfamily c-terminal domain
BAFHLJ01_RS02965	SM00650	Ribosomal RNA adenine dimethylases
BAFHLJ01_RS02985	SM00836	DALR anticodon binding domain
BAFHLJ01_RS02985	SM01016	Arginyl tRNA synthetase N terminal dom
BAFHLJ01_RS02995	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BAFHLJ01_RS03000	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BAFHLJ01_RS03025	SM00271	DnaJ molecular chaperone homology domain
BAFHLJ01_RS03040	SM00936	Penicillin-binding protein 5, C-terminal domain 
BAFHLJ01_RS03090	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS03090	SM00994	ClpX C4-type zinc finger
BAFHLJ01_RS03090	SM01086	C-terminal, D2-small domain, of ClpB protein
BAFHLJ01_RS03100	SM00363	S4 RNA-binding domain
BAFHLJ01_RS03100	SM01390	BAFHLJ01_RS03100
BAFHLJ01_RS03160	SM00257	Lysin motif
BAFHLJ01_RS03205	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS03255	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS03300	SM01323	BAFHLJ01_RS03300
BAFHLJ01_RS03320	SM00271	DnaJ molecular chaperone homology domain
BAFHLJ01_RS03325	SM00729	Elongator protein 3, MiaB family, Radical SAM
BAFHLJ01_RS03335	SM00855	Phosphoglycerate mutase family
BAFHLJ01_RS03375	SM00646	BAFHLJ01_RS03375
BAFHLJ01_RS03390	SM00073	Histidine Phosphotransfer domain
BAFHLJ01_RS03390	SM00260	Two component signalling adaptor domain
BAFHLJ01_RS03390	SM00387	Histidine kinase-like ATPases
BAFHLJ01_RS03390	SM01231	BAFHLJ01_RS03390
BAFHLJ01_RS03395	SM00138	Methyltransferase, chemotaxis proteins 
BAFHLJ01_RS03395	SM00260	Two component signalling adaptor domain
BAFHLJ01_RS03405	SM00448	cheY-homologous receiver domain
BAFHLJ01_RS03430	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS03445	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BAFHLJ01_RS03450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BAFHLJ01_RS03505	SM00838	Elongation factor G C-terminus
BAFHLJ01_RS03505	SM00889	Elongation factor G, domain IV
BAFHLJ01_RS03515	SM00962	SRP54-type protein, GTPase domain
BAFHLJ01_RS03515	SM00963	SRP54-type protein, helical bundle domain
BAFHLJ01_RS03560	SM00358	Double-stranded RNA binding motif
BAFHLJ01_RS03560	SM00535	Ribonuclease III family
BAFHLJ01_RS03595	SM00400	zinc finger
BAFHLJ01_RS03595	SM00493	BAFHLJ01_RS03595
BAFHLJ01_RS03610	SM00028	Tetratricopeptide repeats
BAFHLJ01_RS03655	SM01118	BAFHLJ01_RS03655
BAFHLJ01_RS03695	SM00470	ParB-like nuclease domain
BAFHLJ01_RS03740	SM00883	Chaperonin 10 Kd subunit
BAFHLJ01_RS03745	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS03770	SM00478	endonuclease III
BAFHLJ01_RS03810	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS03850	SM00257	Lysin motif
BAFHLJ01_RS03855	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS03855	SM00448	cheY-homologous receiver domain
BAFHLJ01_RS03860	SM00387	Histidine kinase-like ATPases
BAFHLJ01_RS03860	SM00388	His Kinase A (phosphoacceptor) domain
BAFHLJ01_RS03995	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS04030	SM00935	Outer membrane protein (OmpH-like)
BAFHLJ01_RS04035	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BAFHLJ01_RS04035	SM00534	ATPase domain of DNA mismatch repair MUTS family
BAFHLJ01_RS04050	SM00316	Ribosomal protein S1-like RNA-binding domain
BAFHLJ01_RS04050	SM00322	K homology RNA-binding domain
BAFHLJ01_RS04070	SM01387	BAFHLJ01_RS04070
BAFHLJ01_RS04075	SM00316	Ribosomal protein S1-like RNA-binding domain
BAFHLJ01_RS04075	SM00322	K homology RNA-binding domain
BAFHLJ01_RS04120	SM00363	S4 RNA-binding domain
BAFHLJ01_RS04175	SM00487	DEAD-like helicases superfamily
BAFHLJ01_RS04175	SM00490	helicase superfamily c-terminal domain
BAFHLJ01_RS04175	SM00847	Helicase associated domain (HA2)  Add an annotation
BAFHLJ01_RS04210	SM00382	ATPases associated with a variety of cellular activities
BAFHLJ01_RS04210	SM01086	C-terminal, D2-small domain, of ClpB protein
