BB_0014	SM00487	DEAD-like helicases superfamily
BB_0014	SM00490	helicase superfamily c-terminal domain
BB_0016	SM00450	Rhodanese Homology Domain
BB_0022	SM00382	ATPases associated with a variety of cellular activities
BB_0023	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BB_0035	SM00434	DNA Topoisomerase IV
BB_0036	SM00387	Histidine kinase-like ATPases
BB_0036	SM00433	TopoisomeraseII
BB_0037	SM00563	Phosphate acyltransferases
BB_0040	SM00138	Methyltransferase, chemotaxis proteins 
BB_0047	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
BB_0053	SM00986	Uracil DNA glycosylase superfamily
BB_0053	SM00987	UreE urease accessory protein, C-terminal domain 
BB_0057	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BB_0058	SM00028	Tetratricopeptide repeats
BB_0059	SM01091	Transporter associated domain
BB_0063	SM00740	BB_0063
BB_0076	SM00382	ATPases associated with a variety of cellular activities
BB_0076	SM00962	SRP54-type protein, GTPase domain
BB_0080	SM00382	ATPases associated with a variety of cellular activities
BB_0086	SM00382	ATPases associated with a variety of cellular activities
BB_0088	SM00838	Elongation factor G C-terminus
BB_0098	SM00463	Small MutS-related domain
BB_0098	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BB_0098	SM00534	ATPase domain of DNA mismatch repair MUTS family
BB_0104	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BB_0106	SM00028	Tetratricopeptide repeats
BB_0118	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BB_0127	SM00316	Ribosomal protein S1-like RNA-binding domain
BB_0129	SM00363	S4 RNA-binding domain
BB_0131	SM00382	ATPases associated with a variety of cellular activities
BB_0136	SM00740	BB_0136
BB_0143	SM01234	BB_0143
BB_0146	SM00382	ATPases associated with a variety of cellular activities
BB_0154	SM00957	SecA DEAD-like domain
BB_0154	SM00958	SecA preprotein cross-linking domain
BB_0160	SM01005	Alanine racemase, C-terminal domain
BB_0169	SM00316	Ribosomal protein S1-like RNA-binding domain
BB_0170	SM00287	Bacterial SH3 domain homologues
BB_0171	SM00028	Tetratricopeptide repeats
BB_0172	SM00327	von Willebrand factor (vWF) type A domain
BB_0173	SM00327	von Willebrand factor (vWF) type A domain
BB_0175	SM00327	von Willebrand factor (vWF) type A domain
BB_0178	SM01228	BB_0178
BB_0195	SM00028	Tetratricopeptide repeats
BB_0196	SM00937	BB_0196
BB_0198	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BB_0198	SM00954	Region found in RelA / SpoT proteins
BB_0202	SM00116	Domain in cystathionine beta-synthase and other proteins.
BB_0202	SM01091	Transporter associated domain
BB_0203	SM00244	prohibitin homologues
BB_0204	SM00244	prohibitin homologues
BB_0209	SM00028	Tetratricopeptide repeats
BB_0210	SM00028	Tetratricopeptide repeats
BB_0210	SM00671	Sel1-like repeats.
BB_0211	SM00853	MutL C terminal dimerisation domain
BB_0211	SM01340	BB_0211
BB_0214	SM00841	Elongation factor P, C-terminal
BB_0214	SM01185	BB_0214
BB_0218	SM00382	ATPases associated with a variety of cellular activities
BB_0220	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BB_0228	SM01264	BB_0228
BB_0230	SM00357	Cold shock protein domain
BB_0230	SM00382	ATPases associated with a variety of cellular activities
BB_0232	SM00411	bacterial (prokaryotic) histone like domain
BB_0253	SM00382	ATPases associated with a variety of cellular activities
BB_0253	SM00464	Found in ATP-dependent protease La (LON)
BB_0257	SM00843	BB_0257
BB_0261	SM00028	Tetratricopeptide repeats
BB_0262	SM00257	Lysin motif
BB_0267	SM01245	BB_0267
BB_0270	SM00382	ATPases associated with a variety of cellular activities
BB_0270	SM00962	SRP54-type protein, GTPase domain
BB_0288	SM00382	ATPases associated with a variety of cellular activities
BB_0295	SM00382	ATPases associated with a variety of cellular activities
BB_0295	SM01086	C-terminal, D2-small domain, of ClpB protein
BB_0298	SM00028	Tetratricopeptide repeats
BB_0299	SM00864	Tubulin/FtsZ family, GTPase domain
BB_0299	SM00865	Tubulin/FtsZ family, C-terminal domain
BB_0300	SM00842	Cell division protein FtsA
BB_0312	SM00260	Two component signalling adaptor domain
BB_0326	SM00028	Tetratricopeptide repeats
BB_0327	SM00563	Phosphate acyltransferases
BB_0334	SM00382	ATPases associated with a variety of cellular activities
BB_0335	SM00382	ATPases associated with a variety of cellular activities
BB_0337	SM01192	BB_0337
BB_0337	SM01193	BB_0337
BB_0341	SM00845	GatB domain
BB_0345	SM00530	Helix-turn-helix XRE-family like proteins 
BB_0355	SM01058	CarD-like/TRCF domain
BB_0359	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BB_0359	SM00245	tail specific protease
BB_0363	SM00052	Putative diguanylate phosphodiesterase
BB_0364	SM00851	MGS-like domain
BB_0369	SM00382	ATPases associated with a variety of cellular activities
BB_0370	SM00363	S4 RNA-binding domain
BB_0374	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BB_0380	SM00924	MgtE intracellular N domain
BB_0388	SM00663	RNA polymerase I subunit A N-terminus
BB_0393	SM00649	Ribosomal protein L11/L12
BB_0394	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BB_0394	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BB_0399	SM00248	ankyrin repeats
BB_0402	SM00946	Prolyl-tRNA synthetase, C-terminal
BB_0414	SM00138	Methyltransferase, chemotaxis proteins 
BB_0419	SM00267	diguanylate cyclase
BB_0419	SM00448	cheY-homologous receiver domain
BB_0420	SM00387	Histidine kinase-like ATPases
BB_0420	SM00388	His Kinase A (phosphoacceptor) domain
BB_0420	SM00448	cheY-homologous receiver domain
BB_0434	SM00470	ParB-like nuclease domain
BB_0435	SM00434	DNA Topoisomerase IV
BB_0436	SM00387	Histidine kinase-like ATPases
BB_0436	SM00433	TopoisomeraseII
BB_0437	SM00382	ATPases associated with a variety of cellular activities
BB_0437	SM00760	Bacterial dnaA protein helix-turn-helix domain
BB_0438	SM00480	DNA polymerase III beta subunit
BB_0443	SM00393	Putative single-stranded nucleic acids-binding domain
BB_0443	SM01245	BB_0443
BB_0447	SM00970	Sexual stage antigen s48/45 domain
BB_0457	SM00465	GIY-YIG type nucleases (URI domain)
BB_0458	SM00060	Fibronectin type 3 domain
BB_0459	SM00028	Tetratricopeptide repeats
BB_0461	SM00382	ATPases associated with a variety of cellular activities
BB_0463	SM00562	BB_0463
BB_0466	SM00382	ATPases associated with a variety of cellular activities
BB_0477	SM01403	BB_0477
BB_0481	SM01382	BB_0481
BB_0481	SM01383	BB_0481
BB_0484	SM00322	K homology RNA-binding domain
BB_0488	SM01374	BB_0488
BB_0489	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BB_0502	SM00662	RNA polymerases D
BB_0504	SM00322	K homology RNA-binding domain
BB_0504	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BB_0507	SM00909	Sporulation and spore germination
BB_0514	SM00873	B3/4 domain
BB_0514	SM00874	tRNA synthetase B5 domain
BB_0517	SM00271	DnaJ molecular chaperone homology domain
BB_0533	SM00849	Metallo-beta-lactamase superfamily
BB_0537	SM00028	Tetratricopeptide repeats
BB_0540	SM00838	Elongation factor G C-terminus
BB_0540	SM00889	Elongation factor G, domain IV
BB_0542	SM00028	Tetratricopeptide repeats
BB_0544	SM01400	BB_0544
BB_0548	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BB_0548	SM00474	3'-5' exonuclease
BB_0548	SM00475	5'-3' exonuclease
BB_0548	SM00482	DNA polymerase A domain
BB_0551	SM00448	cheY-homologous receiver domain
BB_0552	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BB_0552	SM00292	breast cancer carboxy-terminal domain
BB_0552	SM00532	Ligase N family
BB_0560	SM00387	Histidine kinase-like ATPases
BB_0561	SM01350	BB_0561
BB_0565	SM00260	Two component signalling adaptor domain
BB_0567	SM00073	Histidine Phosphotransfer domain
BB_0567	SM00260	Two component signalling adaptor domain
BB_0567	SM00387	Histidine kinase-like ATPases
BB_0567	SM01231	BB_0567
BB_0570	SM00448	cheY-homologous receiver domain
BB_0573	SM00382	ATPases associated with a variety of cellular activities
BB_0579	SM00481	DNA polymerase alpha chain like domain
BB_0581	SM00487	DEAD-like helicases superfamily
BB_0581	SM00490	helicase superfamily c-terminal domain
BB_0590	SM00650	Ribosomal RNA adenine dimethylases
BB_0594	SM00836	DALR anticodon binding domain
BB_0594	SM01016	Arginyl tRNA synthetase N terminal dom
BB_0596	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BB_0597	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BB_0602	SM00271	DnaJ molecular chaperone homology domain
BB_0605	SM00936	Penicillin-binding protein 5, C-terminal domain 
BB_0612	SM00382	ATPases associated with a variety of cellular activities
BB_0612	SM00994	ClpX C4-type zinc finger
BB_0612	SM01086	C-terminal, D2-small domain, of ClpB protein
BB_0613	SM00382	ATPases associated with a variety of cellular activities
BB_0613	SM00464	Found in ATP-dependent protease La (LON)
BB_0615	SM00363	S4 RNA-binding domain
BB_0615	SM01390	BB_0615
BB_0623	SM00487	DEAD-like helicases superfamily
BB_0623	SM00490	helicase superfamily c-terminal domain
BB_0623	SM00982	BB_0623
BB_0623	SM01058	CarD-like/TRCF domain
BB_0625	SM00257	Lysin motif
BB_0626	SM00493	BB_0626
BB_0632	SM00382	ATPases associated with a variety of cellular activities
BB_0642	SM00382	ATPases associated with a variety of cellular activities
BB_0651	SM01323	BB_0651
BB_0655	SM00271	DnaJ molecular chaperone homology domain
BB_0656	SM00729	Elongator protein 3, MiaB family, Radical SAM
BB_0658	SM00855	Phosphoglycerate mutase family
BB_0666	SM00646	BB_0666
BB_0669	SM00073	Histidine Phosphotransfer domain
BB_0669	SM00260	Two component signalling adaptor domain
BB_0669	SM00387	Histidine kinase-like ATPases
BB_0669	SM01231	BB_0669
BB_0670	SM00138	Methyltransferase, chemotaxis proteins 
BB_0670	SM00260	Two component signalling adaptor domain
BB_0672	SM00448	cheY-homologous receiver domain
BB_0677	SM00382	ATPases associated with a variety of cellular activities
BB_0680	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BB_0681	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BB_0691	SM00838	Elongation factor G C-terminus
BB_0691	SM00889	Elongation factor G, domain IV
BB_0694	SM00962	SRP54-type protein, GTPase domain
BB_0694	SM00963	SRP54-type protein, helical bundle domain
BB_0705	SM00358	Double-stranded RNA binding motif
BB_0705	SM00535	Ribonuclease III family
BB_0714	SM00028	Tetratricopeptide repeats
BB_0720	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BB_0731	SM00470	ParB-like nuclease domain
BB_0741	SM00883	Chaperonin 10 Kd subunit
BB_0742	SM00382	ATPases associated with a variety of cellular activities
BB_0745	SM00478	endonuclease III
BB_0754	SM00382	ATPases associated with a variety of cellular activities
BB_0755	SM00849	Metallo-beta-lactamase superfamily
BB_0761	SM00257	Lysin motif
BB_0763	SM00382	ATPases associated with a variety of cellular activities
BB_0763	SM00448	cheY-homologous receiver domain
BB_0764	SM00387	Histidine kinase-like ATPases
BB_0764	SM00388	His Kinase A (phosphoacceptor) domain
BB_0789	SM00382	ATPases associated with a variety of cellular activities
BB_0796	SM00935	Outer membrane protein (OmpH-like)
BB_0797	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BB_0797	SM00534	ATPase domain of DNA mismatch repair MUTS family
BB_0800	SM00316	Ribosomal protein S1-like RNA-binding domain
BB_0800	SM00322	K homology RNA-binding domain
BB_0804	SM01387	BB_0804
BB_0805	SM00316	Ribosomal protein S1-like RNA-binding domain
BB_0805	SM00322	K homology RNA-binding domain
BB_0827	SM00487	DEAD-like helicases superfamily
BB_0827	SM00490	helicase superfamily c-terminal domain
BB_0827	SM00847	Helicase associated domain (HA2)  Add an annotation
BB_0828	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BB_0828	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BB_0828	SM00493	BB_0828
BB_0834	SM00382	ATPases associated with a variety of cellular activities
BB_0834	SM01086	C-terminal, D2-small domain, of ClpB protein
BB_0836	SM00487	DEAD-like helicases superfamily
BB_0836	SM00490	helicase superfamily c-terminal domain
BB_K52	SM00433	TopoisomeraseII
BB_L20	SM00487	DEAD-like helicases superfamily
BB_L21	SM00490	helicase superfamily c-terminal domain
BB_P20	SM00487	DEAD-like helicases superfamily
BB_P21	SM00490	helicase superfamily c-terminal domain
BB_S20	SM00487	DEAD-like helicases superfamily
BB_S21	SM00490	helicase superfamily c-terminal domain
