locus-tag class description BDU_RS00015 PF00921 Borrelia lipoprotein BDU_RS00025 PF00921 Borrelia lipoprotein BDU_RS00045 PF00933 Glycosyl hydrolase family 3 N terminal domain BDU_RS00055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BDU_RS00055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BDU_RS00055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BDU_RS00055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BDU_RS00060 PF00579 tRNA synthetases class I (W and Y) BDU_RS00065 PF01594 AI-2E family transporter BDU_RS00075 PF02457 DisA bacterial checkpoint controller nucleotide-binding BDU_RS00080 PF07949 YbbR-like protein BDU_RS00085 PF01648 4'-phosphopantetheinyl transferase superfamily BDU_RS00090 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) BDU_RS00095 PF01416 tRNA pseudouridine synthase BDU_RS00105 PF00271 Helicase conserved C-terminal domain BDU_RS00105 PF17764 3′ DNA-binding domain (3′BD) BDU_RS00105 PF18074 Primosomal protein N C-terminal domain BDU_RS00105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BDU_RS00105 PF04851 Type III restriction enzyme, res subunit BDU_RS00110 PF00485 Phosphoribulokinase / Uridine kinase family BDU_RS00120 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BDU_RS00120 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BDU_RS00125 PF00849 RNA pseudouridylate synthase BDU_RS00135 PF00365 Phosphofructokinase BDU_RS00140 PF02547 Queuosine biosynthesis protein BDU_RS00145 PF05491 RuvB C-terminal winged helix domain BDU_RS00145 PF17864 RuvB AAA lid domain BDU_RS00145 PF05496 Holliday junction DNA helicase RuvB P-loop domain BDU_RS00150 PF01330 RuvA N terminal domain BDU_RS00155 PF01709 Transcriptional regulator BDU_RS00160 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BDU_RS00160 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BDU_RS00175 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BDU_RS00185 PF10502 Signal peptidase, peptidase S26 BDU_RS00190 PF08308 PEGA domain BDU_RS00190 PF03781 Sulfatase-modifying factor enzyme 1 BDU_RS00195 PF01668 SmpB protein BDU_RS00205 PF00521 DNA gyrase/topoisomerase IV, subunit A BDU_RS00210 PF00204 DNA gyrase B BDU_RS00210 PF00986 DNA gyrase B subunit, carboxyl terminus BDU_RS00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BDU_RS00210 PF01751 Toprim domain BDU_RS00215 PF01553 Acyltransferase BDU_RS00230 PF03705 CheR methyltransferase, all-alpha domain BDU_RS00230 PF01739 CheR methyltransferase, SAM binding domain BDU_RS00235 PF01895 PhoU domain BDU_RS00250 PF02463 RecF/RecN/SMC N terminal domain BDU_RS00250 PF06470 SMC proteins Flexible Hinge Domain BDU_RS00250 PF02463 RecF/RecN/SMC N terminal domain BDU_RS00250 PF06470 SMC proteins Flexible Hinge Domain BDU_RS00255 PF01351 Ribonuclease HII BDU_RS00270 PF02592 Putative vitamin uptake transporter BDU_RS00275 PF00588 SpoU rRNA Methylase family BDU_RS00280 PF03167 Uracil DNA glycosylase superfamily BDU_RS00285 PF03840 Preprotein translocase SecG subunit BDU_RS00290 PF00121 Triosephosphate isomerase BDU_RS00295 PF00162 Phosphoglycerate kinase BDU_RS00300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BDU_RS00300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BDU_RS00310 PF03471 Transporter associated domain BDU_RS00310 PF00571 CBS domain BDU_RS00315 PF02130 Uncharacterized protein family UPF0054 BDU_RS00320 PF00085 Thioredoxin BDU_RS00325 PF04452 RNA methyltransferase BDU_RS00330 PF03793 PASTA domain BDU_RS00335 PF00551 Formyl transferase BDU_RS00335 PF02911 Formyl transferase, C-terminal domain BDU_RS00340 PF01327 Polypeptide deformylase BDU_RS00350 PF01321 Creatinase/Prolidase N-terminal domain BDU_RS00350 PF00557 Metallopeptidase family M24 BDU_RS00360 PF02073 Thermophilic metalloprotease (M29) BDU_RS00385 PF03462 PCRF domain BDU_RS00385 PF00472 RF-1 domain BDU_RS00395 PF00448 SRP54-type protein, GTPase domain BDU_RS00395 PF02881 SRP54-type protein, helical bundle domain BDU_RS00405 PF02687 FtsX-like permease family BDU_RS00405 PF12704 MacB-like periplasmic core domain BDU_RS00410 PF00005 ABC transporter BDU_RS00430 PF00266 Aminotransferase class-V BDU_RS00435 PF01592 NifU-like N terminal domain BDU_RS00440 PF01078 Magnesium chelatase, subunit ChlI BDU_RS00440 PF13335 Magnesium chelatase, subunit ChlI C-terminal BDU_RS00445 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BDU_RS00445 PF00056 lactate/malate dehydrogenase, NAD binding domain BDU_RS00450 PF14492 Elongation Factor G, domain II BDU_RS00450 PF00679 Elongation factor G C-terminus BDU_RS00450 PF06421 GTP-binding protein LepA C-terminus BDU_RS00450 PF00009 Elongation factor Tu GTP binding domain BDU_RS00450 PF03144 Elongation factor Tu domain 2 BDU_RS00470 PF01813 ATP synthase subunit D BDU_RS00475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BDU_RS00475 PF02874 ATP synthase alpha/beta family, beta-barrel domain BDU_RS00480 PF02874 ATP synthase alpha/beta family, beta-barrel domain BDU_RS00480 PF16886 ATPsynthase alpha/beta subunit N-term extension BDU_RS00480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BDU_RS00500 PF01713 Smr domain BDU_RS00500 PF00488 MutS domain V BDU_RS00505 PF03193 RsgA GTPase BDU_RS00510 PF01177 Asp/Glu/Hydantoin racemase BDU_RS00515 PF01336 OB-fold nucleic acid binding domain BDU_RS00515 PF00152 tRNA synthetases class II (D, K and N) BDU_RS00525 PF00156 Phosphoribosyl transferase domain BDU_RS00530 PF13180 PDZ domain BDU_RS00535 PF00557 Metallopeptidase family M24 BDU_RS00545 PF01029 NusB family BDU_RS00550 PF05698 Bacterial trigger factor protein (TF) C-terminus BDU_RS00555 PF02803 Thiolase, C-terminal domain BDU_RS00555 PF00108 Thiolase, N-terminal domain BDU_RS00565 PF03796 DnaB-like helicase C terminal domain BDU_RS00565 PF00772 DnaB-like helicase N terminal domain BDU_RS00570 PF03948 Ribosomal protein L9, C-terminal domain BDU_RS00570 PF01281 Ribosomal protein L9, N-terminal domain BDU_RS00575 PF01084 Ribosomal protein S18 BDU_RS00580 PF00436 Single-strand binding protein family BDU_RS00585 PF01250 Ribosomal protein S6 BDU_RS00590 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BDU_RS00590 PF00367 phosphotransferase system, EIIB BDU_RS00590 PF02378 Phosphotransferase system, EIIC BDU_RS00595 PF03006 Haemolysin-III related BDU_RS00600 PF02163 Peptidase family M50 BDU_RS00600 PF17820 PDZ domain BDU_RS00610 PF01255 Putative undecaprenyl diphosphate synthase BDU_RS00615 PF01765 Ribosome recycling factor BDU_RS00620 PF00889 Elongation factor TS BDU_RS00625 PF00318 Ribosomal protein S2 BDU_RS00630 PF02545 Maf-like protein BDU_RS00650 PF00575 S1 RNA binding domain BDU_RS00655 PF02224 Cytidylate kinase BDU_RS00660 PF00849 RNA pseudouridylate synthase BDU_RS00660 PF01479 S4 domain BDU_RS00670 PF00154 recA bacterial DNA recombination protein BDU_RS00675 PF03449 Transcription elongation factor, N-terminal BDU_RS00675 PF01272 Transcription elongation factor, GreA/GreB, C-term BDU_RS00690 PF03129 Anticodon binding domain BDU_RS00690 PF13393 Histidyl-tRNA synthetase BDU_RS00695 PF03717 Penicillin-binding Protein dimerisation domain BDU_RS00695 PF00905 Penicillin binding protein transpeptidase domain BDU_RS00700 PF00501 AMP-binding enzyme BDU_RS00710 PF00873 AcrB/AcrD/AcrF family BDU_RS00735 PF00528 Binding-protein-dependent transport system inner membrane component BDU_RS00740 PF00571 CBS domain BDU_RS00740 PF00005 ABC transporter BDU_RS00745 PF00460 Flagella basal body rod protein BDU_RS00745 PF00669 Bacterial flagellin N-terminal helical region BDU_RS00745 PF00700 Bacterial flagellin C-terminal helical region BDU_RS00750 PF07195 Flagellar hook-associated protein 2 C-terminus BDU_RS00750 PF02465 Flagellar hook-associated protein 2 N-terminus BDU_RS00755 PF01979 Amidohydrolase family BDU_RS00760 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BDU_RS00765 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BDU_RS00765 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BDU_RS00770 PF01043 SecA preprotein cross-linking domain BDU_RS00770 PF02810 SEC-C motif BDU_RS00770 PF07516 SecA Wing and Scaffold domain BDU_RS00770 PF07517 SecA DEAD-like domain BDU_RS00790 PF00842 Alanine racemase, C-terminal domain BDU_RS00790 PF01168 Alanine racemase, N-terminal domain BDU_RS00805 PF01699 Sodium/calcium exchanger protein BDU_RS00815 PF02446 4-alpha-glucanotransferase BDU_RS00830 PF01176 Translation initiation factor 1A / IF-1 BDU_RS00850 PF00092 von Willebrand factor type A domain BDU_RS00865 PF07726 ATPase family associated with various cellular activities (AAA) BDU_RS00865 PF17863 AAA lid domain BDU_RS00870 PF02527 rRNA small subunit methyltransferase G BDU_RS00875 PF01134 Glucose inhibited division protein A BDU_RS00875 PF13932 GidA associated domain BDU_RS00880 PF01926 50S ribosome-binding GTPase BDU_RS00880 PF12631 MnmE helical domain BDU_RS00880 PF10396 GTP-binding protein TrmE N-terminus BDU_RS00890 PF07196 Flagellin hook IN motif BDU_RS00890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BDU_RS00900 PF02623 FliW protein BDU_RS00905 PF02599 Global regulator protein family BDU_RS00915 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BDU_RS00925 PF00453 Ribosomal protein L20 BDU_RS00930 PF01632 Ribosomal protein L35 BDU_RS00935 PF00707 Translation initiation factor IF-3, C-terminal domain BDU_RS00935 PF05198 Translation initiation factor IF-3, N-terminal domain BDU_RS00945 PF01026 TatD related DNase BDU_RS00955 PF03462 PCRF domain BDU_RS00955 PF00472 RF-1 domain BDU_RS00960 PF05175 Methyltransferase small domain BDU_RS00965 PF04607 Region found in RelA / SpoT proteins BDU_RS00965 PF02824 TGS domain BDU_RS00975 PF07478 D-ala D-ala ligase C-terminus BDU_RS00975 PF01820 D-ala D-ala ligase N-terminus BDU_RS00980 PF01225 Mur ligase family, catalytic domain BDU_RS00980 PF08245 Mur ligase middle domain BDU_RS00980 PF02875 Mur ligase family, glutamate ligase domain BDU_RS00990 PF03471 Transporter associated domain BDU_RS00990 PF00571 CBS domain BDU_RS00990 PF01595 Cyclin M transmembrane N-terminal domain BDU_RS00995 PF01145 SPFH domain / Band 7 family BDU_RS01000 PF01145 SPFH domain / Band 7 family BDU_RS01025 PF00483 Nucleotidyl transferase BDU_RS01045 PF08676 MutL C terminal dimerisation domain BDU_RS01045 PF01119 DNA mismatch repair protein, C-terminal domain BDU_RS01065 PF08207 Elongation factor P (EF-P) KOW-like domain BDU_RS01065 PF09285 Elongation factor P, C-terminal BDU_RS01065 PF01132 Elongation factor P (EF-P) OB domain BDU_RS01070 PF12849 PBP superfamily domain BDU_RS01075 PF00528 Binding-protein-dependent transport system inner membrane component BDU_RS01080 PF00528 Binding-protein-dependent transport system inner membrane component BDU_RS01085 PF00005 ABC transporter BDU_RS01090 PF02535 ZIP Zinc transporter BDU_RS01095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BDU_RS01095 PF01411 tRNA synthetases class II (A) BDU_RS01100 PF01706 FliG C-terminal domain BDU_RS01100 PF14841 FliG middle domain BDU_RS01100 PF14842 FliG N-terminal domain BDU_RS01105 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BDU_RS01115 PF01207 Dihydrouridine synthase (Dus) BDU_RS01120 PF02403 Seryl-tRNA synthetase N-terminal domain BDU_RS01120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BDU_RS01130 PF08367 Peptidase M16C associated BDU_RS01130 PF00675 Insulinase (Peptidase family M16) BDU_RS01130 PF05193 Peptidase M16 inactive domain BDU_RS01135 PF01197 Ribosomal protein L31 BDU_RS01140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BDU_RS01140 PF07497 Rho termination factor, RNA-binding domain BDU_RS01150 PF00216 Bacterial DNA-binding protein BDU_RS01155 PF01649 Ribosomal protein S20 BDU_RS01165 PF01926 50S ribosome-binding GTPase BDU_RS01165 PF06071 Protein of unknown function (DUF933) BDU_RS01175 PF00795 Carbon-nitrogen hydrolase BDU_RS01185 PF01712 Deoxynucleoside kinase BDU_RS01195 PF00230 Major intrinsic protein BDU_RS01200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BDU_RS01200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BDU_RS01205 PF07690 Major Facilitator Superfamily BDU_RS01210 PF03009 Glycerophosphoryl diester phosphodiesterase family BDU_RS01215 PF01266 FAD dependent oxidoreductase BDU_RS01215 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BDU_RS01230 PF01551 Peptidase family M23 BDU_RS01230 PF04225 Opacity-associated protein A LysM-like domain BDU_RS01235 PF01725 Ham1 family BDU_RS01240 PF08439 Oligopeptidase F BDU_RS01240 PF01432 Peptidase family M3 BDU_RS01250 PF09335 SNARE associated Golgi protein BDU_RS01260 PF13603 Leucyl-tRNA synthetase, Domain 2 BDU_RS01260 PF00133 tRNA synthetases class I (I, L, M and V) BDU_RS01260 PF08264 Anticodon-binding domain of tRNA BDU_RS01260 PF09334 tRNA synthetases class I (M) BDU_RS01270 PF00004 ATPase family associated with various cellular activities (AAA) BDU_RS01270 PF05362 Lon protease (S16) C-terminal proteolytic domain BDU_RS01270 PF02190 ATP-dependent protease La (LON) substrate-binding domain BDU_RS01280 PF17768 RecJ OB domain BDU_RS01280 PF01368 DHH family BDU_RS01280 PF02272 DHHA1 domain BDU_RS01285 PF01551 Peptidase family M23 BDU_RS01285 PF04225 Opacity-associated protein A LysM-like domain BDU_RS01290 PF01165 Ribosomal protein S21 BDU_RS01295 PF01580 FtsK/SpoIIIE family BDU_RS01295 PF09397 Ftsk gamma domain BDU_RS01295 PF17854 FtsK alpha domain BDU_RS01300 PF02673 Bacitracin resistance protein BacA BDU_RS01305 PF10145 Phage-related minor tail protein BDU_RS01305 PF01464 Transglycosylase SLT domain BDU_RS01305 PF01551 Peptidase family M23 BDU_RS01320 PF01551 Peptidase family M23 BDU_RS01320 PF10145 Phage-related minor tail protein BDU_RS01320 PF01464 Transglycosylase SLT domain BDU_RS01325 PF10502 Signal peptidase, peptidase S26 BDU_RS01330 PF00012 Hsp70 protein BDU_RS01355 PF10609 NUBPL iron-transfer P-loop NTPase BDU_RS01360 PF00448 SRP54-type protein, GTPase domain BDU_RS01365 PF00771 FHIPEP family BDU_RS01370 PF01312 FlhB HrpN YscU SpaS Family BDU_RS01375 PF01311 Bacterial export proteins, family 1 BDU_RS01380 PF01313 Bacterial export proteins, family 3 BDU_RS01385 PF00813 FliP family BDU_RS01395 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BDU_RS01400 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BDU_RS01400 PF02154 Flagellar motor switch protein FliM BDU_RS01405 PF03748 Flagellar basal body-associated protein FliL BDU_RS01410 PF00691 OmpA family BDU_RS01410 PF13677 Membrane MotB of proton-channel complex MotA/MotB BDU_RS01415 PF01618 MotA/TolQ/ExbB proton channel family BDU_RS01425 PF07559 Flagellar basal body protein FlaE BDU_RS01425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BDU_RS01425 PF00460 Flagella basal body rod protein BDU_RS01430 PF03963 Flagellar hook capping protein - N-terminal region BDU_RS01450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BDU_RS01450 PF18269 T3SS EscN ATPase C-terminal domain BDU_RS01450 PF02874 ATP synthase alpha/beta family, beta-barrel domain BDU_RS01455 PF02108 Flagellar assembly protein FliH BDU_RS01460 PF14842 FliG N-terminal domain BDU_RS01460 PF14841 FliG middle domain BDU_RS01460 PF01706 FliG C-terminal domain BDU_RS01465 PF01514 Secretory protein of YscJ/FliF family BDU_RS01465 PF08345 Flagellar M-ring protein C-terminal BDU_RS01470 PF02049 Flagellar hook-basal body complex protein FliE BDU_RS01475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BDU_RS01475 PF00460 Flagella basal body rod protein BDU_RS01480 PF00460 Flagella basal body rod protein BDU_RS01485 PF07724 AAA domain (Cdc48 subfamily) BDU_RS01490 PF00227 Proteasome subunit BDU_RS01495 PF02481 DNA recombination-mediator protein A BDU_RS01500 PF00515 Tetratricopeptide repeat BDU_RS01505 PF00091 Tubulin/FtsZ family, GTPase domain BDU_RS01505 PF12327 FtsZ family, C-terminal domain BDU_RS01510 PF02491 SHS2 domain inserted in FTSA BDU_RS01515 PF03799 Cell division protein FtsQ BDU_RS01515 PF08478 POTRA domain, FtsQ-type BDU_RS01520 PF01098 Cell cycle protein BDU_RS01525 PF00953 Glycosyl transferase family 4 BDU_RS01530 PF01225 Mur ligase family, catalytic domain BDU_RS01530 PF02875 Mur ligase family, glutamate ligase domain BDU_RS01530 PF08245 Mur ligase middle domain BDU_RS01540 PF01795 MraW methylase family BDU_RS01565 PF01513 ATP-NAD kinase BDU_RS01570 PF01584 CheW-like domain BDU_RS01575 PF01728 FtsJ-like methyltransferase BDU_RS01580 PF00348 Polyprenyl synthetase BDU_RS01600 PF00005 ABC transporter BDU_RS01640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BDU_RS01645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BDU_RS01650 PF00528 Binding-protein-dependent transport system inner membrane component BDU_RS01655 PF00528 Binding-protein-dependent transport system inner membrane component BDU_RS01655 PF12911 N-terminal TM domain of oligopeptide transport permease C BDU_RS01660 PF00005 ABC transporter BDU_RS01660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BDU_RS01665 PF00005 ABC transporter BDU_RS01665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BDU_RS01675 PF03952 Enolase, N-terminal domain BDU_RS01675 PF00113 Enolase, C-terminal TIM barrel domain BDU_RS01680 PF00380 Ribosomal protein S9/S16 BDU_RS01685 PF00572 Ribosomal protein L13 BDU_RS01695 PF02934 GatB/GatE catalytic domain BDU_RS01695 PF02637 GatB domain BDU_RS01700 PF01425 Amidase BDU_RS01710 PF00580 UvrD/REP helicase N-terminal domain BDU_RS01710 PF13361 UvrD-like helicase C-terminal domain BDU_RS01725 PF05670 NFACT protein RNA binding domain BDU_RS01730 PF00224 Pyruvate kinase, barrel domain BDU_RS01730 PF02887 Pyruvate kinase, alpha/beta domain BDU_RS01735 PF00830 Ribosomal L28 family BDU_RS01770 PF04452 RNA methyltransferase BDU_RS01775 PF13180 PDZ domain BDU_RS01775 PF03572 Peptidase family S41 BDU_RS01780 PF10609 NUBPL iron-transfer P-loop NTPase BDU_RS01785 PF01790 Prolipoprotein diacylglyceryl transferase BDU_RS01790 PF00563 EAL domain BDU_RS01795 PF02127 Aminopeptidase I zinc metalloprotease (M18) BDU_RS01800 PF00367 phosphotransferase system, EIIB BDU_RS01805 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BDU_RS01805 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BDU_RS01810 PF00004 ATPase family associated with various cellular activities (AAA) BDU_RS01810 PF17871 AAA lid domain BDU_RS01810 PF02861 Clp amino terminal domain, pathogenicity island component BDU_RS01810 PF10431 C-terminal, D2-small domain, of ClpB protein BDU_RS01810 PF07724 AAA domain (Cdc48 subfamily) BDU_RS01810 PF00004 ATPase family associated with various cellular activities (AAA) BDU_RS01810 PF07724 AAA domain (Cdc48 subfamily) BDU_RS01810 PF17871 AAA lid domain BDU_RS01810 PF10431 C-terminal, D2-small domain, of ClpB protein BDU_RS01810 PF02861 Clp amino terminal domain, pathogenicity island component BDU_RS01815 PF01479 S4 domain BDU_RS01815 PF00579 tRNA synthetases class I (W and Y) BDU_RS01820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BDU_RS01820 PF03129 Anticodon binding domain BDU_RS01825 PF00749 tRNA synthetases class I (E and Q), catalytic domain BDU_RS01840 PF01048 Phosphorylase superfamily BDU_RS01845 PF00438 S-adenosylmethionine synthetase, N-terminal domain BDU_RS01845 PF02772 S-adenosylmethionine synthetase, central domain BDU_RS01845 PF02773 S-adenosylmethionine synthetase, C-terminal domain BDU_RS01850 PF02664 S-Ribosylhomocysteinase (LuxS) BDU_RS01855 PF01230 HIT domain BDU_RS01860 PF01769 Divalent cation transporter BDU_RS01860 PF00571 CBS domain BDU_RS01860 PF03448 MgtE intracellular N domain BDU_RS01865 PF01204 Trehalase BDU_RS01870 PF02608 ABC transporter substrate-binding protein PnrA-like BDU_RS01875 PF02608 ABC transporter substrate-binding protein PnrA-like BDU_RS01880 PF02608 ABC transporter substrate-binding protein PnrA-like BDU_RS01885 PF02608 ABC transporter substrate-binding protein PnrA-like BDU_RS01890 PF00177 Ribosomal protein S7p/S5e BDU_RS01895 PF00164 Ribosomal protein S12/S23 BDU_RS01900 PF04997 RNA polymerase Rpb1, domain 1 BDU_RS01900 PF04998 RNA polymerase Rpb1, domain 5 BDU_RS01900 PF05000 RNA polymerase Rpb1, domain 4 BDU_RS01900 PF00623 RNA polymerase Rpb1, domain 2 BDU_RS01900 PF04983 RNA polymerase Rpb1, domain 3 BDU_RS01905 PF04563 RNA polymerase beta subunit BDU_RS01905 PF00562 RNA polymerase Rpb2, domain 6 BDU_RS01905 PF10385 RNA polymerase beta subunit external 1 domain BDU_RS01905 PF04565 RNA polymerase Rpb2, domain 3 BDU_RS01905 PF04561 RNA polymerase Rpb2, domain 2 BDU_RS01905 PF04560 RNA polymerase Rpb2, domain 7 BDU_RS01910 PF00542 Ribosomal protein L7/L12 C-terminal domain BDU_RS01910 PF16320 Ribosomal protein L7/L12 dimerisation domain BDU_RS01915 PF00466 Ribosomal protein L10 BDU_RS01920 PF00687 Ribosomal protein L1p/L10e family BDU_RS01925 PF00298 Ribosomal protein L11, RNA binding domain BDU_RS01925 PF03946 Ribosomal protein L11, N-terminal domain BDU_RS01930 PF02357 Transcription termination factor nusG BDU_RS01935 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BDU_RS01945 PF00471 Ribosomal protein L33 BDU_RS01970 PF12796 Ankyrin repeats (3 copies) BDU_RS01980 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BDU_RS01980 PF09180 Prolyl-tRNA synthetase, C-terminal BDU_RS01980 PF03129 Anticodon binding domain BDU_RS01995 PF01238 Phosphomannose isomerase type I BDU_RS02000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BDU_RS02000 PF02378 Phosphotransferase system, EIIC BDU_RS02000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BDU_RS02020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BDU_RS02025 PF03705 CheR methyltransferase, all-alpha domain BDU_RS02025 PF01739 CheR methyltransferase, SAM binding domain BDU_RS02030 PF00072 Response regulator receiver domain BDU_RS02030 PF01339 CheB methylesterase BDU_RS02040 PF05191 Adenylate kinase, active site lid BDU_RS02050 PF00360 Phytochrome region BDU_RS02050 PF00990 Diguanylate cyclase, GGDEF domain BDU_RS02050 PF01590 GAF domain BDU_RS02050 PF00563 EAL domain BDU_RS02055 PF00672 HAMP domain BDU_RS02055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BDU_RS02055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BDU_RS02055 PF00072 Response regulator receiver domain BDU_RS02055 PF01627 Hpt domain BDU_RS02055 PF00512 His Kinase A (phospho-acceptor) domain BDU_RS02075 PF00156 Phosphoribosyl transferase domain BDU_RS02080 PF00709 Adenylosuccinate synthetase BDU_RS02085 PF10397 Adenylosuccinate lyase C-terminus BDU_RS02085 PF00206 Lyase BDU_RS02090 PF02245 Methylpurine-DNA glycosylase (MPG) BDU_RS02110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BDU_RS02130 PF13614 AAA domain BDU_RS02140 PF02195 ParB-like nuclease domain BDU_RS02140 PF17762 HTH domain found in ParB protein BDU_RS02145 PF03989 DNA gyrase C-terminal domain, beta-propeller BDU_RS02145 PF00521 DNA gyrase/topoisomerase IV, subunit A BDU_RS02150 PF00986 DNA gyrase B subunit, carboxyl terminus BDU_RS02150 PF01751 Toprim domain BDU_RS02150 PF00204 DNA gyrase B BDU_RS02150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BDU_RS02155 PF00308 Bacterial dnaA protein BDU_RS02155 PF08299 Bacterial dnaA protein helix-turn-helix BDU_RS02155 PF11638 DnaA N-terminal domain BDU_RS02160 PF00712 DNA polymerase III beta subunit, N-terminal domain BDU_RS02160 PF02767 DNA polymerase III beta subunit, central domain BDU_RS02160 PF02768 DNA polymerase III beta subunit, C-terminal domain BDU_RS02165 PF02463 RecF/RecN/SMC N terminal domain BDU_RS02175 PF00468 Ribosomal protein L34 BDU_RS02180 PF00825 Ribonuclease P BDU_RS02185 PF02096 60Kd inner membrane protein BDU_RS02185 PF14849 YidC periplasmic domain BDU_RS02195 PF01370 NAD dependent epimerase/dehydratase family BDU_RS02200 PF01116 Fructose-bisphosphate aldolase class-II BDU_RS02205 PF00011 Hsp20/alpha crystallin family BDU_RS02210 PF01336 OB-fold nucleic acid binding domain BDU_RS02210 PF00152 tRNA synthetases class II (D, K and N) BDU_RS02210 PF02938 GAD domain BDU_RS02215 PF00999 Sodium/hydrogen exchanger family BDU_RS02230 PF00309 Sigma-54 factor, Activator interacting domain (AID) BDU_RS02230 PF04963 Sigma-54 factor, core binding domain BDU_RS02230 PF04552 Sigma-54, DNA binding domain BDU_RS02235 PF02417 Chromate transporter BDU_RS02245 PF05552 Conserved TM helix BDU_RS02245 PF00924 Mechanosensitive ion channel BDU_RS02250 PF00534 Glycosyl transferases group 1 BDU_RS02250 PF13439 Glycosyltransferase Family 4 BDU_RS02260 PF01541 GIY-YIG catalytic domain BDU_RS02260 PF08459 UvrC Helix-hairpin-helix N-terminal BDU_RS02300 PF12169 DNA polymerase III subunits gamma and tau domain III BDU_RS02305 PF02575 YbaB/EbfC DNA-binding family BDU_RS02310 PF02132 RecR protein BDU_RS02310 PF13662 Toprim domain BDU_RS02315 PF00334 Nucleoside diphosphate kinase BDU_RS02320 PF02086 D12 class N6 adenine-specific DNA methyltransferase BDU_RS02335 PF00005 ABC transporter BDU_RS02340 PF02578 Multi-copper polyphenol oxidoreductase laccase BDU_RS02345 PF01784 NIF3 (NGG1p interacting factor 3) BDU_RS02350 PF01252 Signal peptidase (SPase) II BDU_RS02365 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BDU_RS02370 PF01554 MatE BDU_RS02380 PF00009 Elongation factor Tu GTP binding domain BDU_RS02380 PF03143 Elongation factor Tu C-terminal domain BDU_RS02380 PF03144 Elongation factor Tu domain 2 BDU_RS02385 PF00338 Ribosomal protein S10p/S20e BDU_RS02390 PF00297 Ribosomal protein L3 BDU_RS02395 PF00573 Ribosomal protein L4/L1 family BDU_RS02400 PF00276 Ribosomal protein L23 BDU_RS02405 PF03947 Ribosomal Proteins L2, C-terminal domain BDU_RS02405 PF00181 Ribosomal Proteins L2, RNA binding domain BDU_RS02410 PF00203 Ribosomal protein S19 BDU_RS02415 PF00237 Ribosomal protein L22p/L17e BDU_RS02420 PF00189 Ribosomal protein S3, C-terminal domain BDU_RS02420 PF07650 KH domain BDU_RS02425 PF00252 Ribosomal protein L16p/L10e BDU_RS02430 PF00831 Ribosomal L29 protein BDU_RS02435 PF00366 Ribosomal protein S17 BDU_RS02440 PF00238 Ribosomal protein L14p/L23e BDU_RS02445 PF00467 KOW motif BDU_RS02445 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BDU_RS02450 PF00673 ribosomal L5P family C-terminus BDU_RS02450 PF00281 Ribosomal protein L5 BDU_RS02455 PF00253 Ribosomal protein S14p/S29e BDU_RS02460 PF00410 Ribosomal protein S8 BDU_RS02465 PF00347 Ribosomal protein L6 BDU_RS02470 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BDU_RS02475 PF03719 Ribosomal protein S5, C-terminal domain BDU_RS02475 PF00333 Ribosomal protein S5, N-terminal domain BDU_RS02480 PF00327 Ribosomal protein L30p/L7e BDU_RS02485 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BDU_RS02490 PF00344 SecY translocase BDU_RS02495 PF00444 Ribosomal protein L36 BDU_RS02500 PF00416 Ribosomal protein S13/S18 BDU_RS02505 PF00411 Ribosomal protein S11 BDU_RS02510 PF01000 RNA polymerase Rpb3/RpoA insert domain BDU_RS02510 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BDU_RS02510 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BDU_RS02515 PF01196 Ribosomal protein L17 BDU_RS02520 PF12072 Domain of unknown function (DUF3552) BDU_RS02520 PF01966 HD domain BDU_RS02520 PF00013 KH domain BDU_RS02525 PF13277 YmdB-like protein BDU_RS02530 PF01479 S4 domain BDU_RS02530 PF01728 FtsJ-like methyltransferase BDU_RS02540 PF01926 50S ribosome-binding GTPase BDU_RS02540 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BDU_RS02550 PF13419 Haloacid dehalogenase-like hydrolase BDU_RS02560 PF01409 tRNA synthetases class II core domain (F) BDU_RS02565 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BDU_RS02565 PF03484 tRNA synthetase B5 domain BDU_RS02570 PF07992 Pyridine nucleotide-disulphide oxidoreductase BDU_RS02575 PF08032 RNA 2'-O ribose methyltransferase substrate binding BDU_RS02575 PF00588 SpoU rRNA Methylase family BDU_RS02580 PF00226 DnaJ domain BDU_RS02580 PF01556 DnaJ C terminal domain BDU_RS02580 PF00684 DnaJ central domain BDU_RS02585 PF00012 Hsp70 protein BDU_RS02590 PF01025 GrpE BDU_RS02595 PF00795 Carbon-nitrogen hydrolase BDU_RS02595 PF02540 NAD synthase BDU_RS02615 PF03309 Type III pantothenate kinase BDU_RS02625 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BDU_RS02635 PF12706 Beta-lactamase superfamily domain BDU_RS02635 PF03099 Biotin/lipoate A/B protein ligase family BDU_RS02640 PF03372 Endonuclease/Exonuclease/phosphatase family BDU_RS02650 PF05193 Peptidase M16 inactive domain BDU_RS02650 PF00675 Insulinase (Peptidase family M16) BDU_RS02685 PF01027 Inhibitor of apoptosis-promoting Bax1 BDU_RS02690 PF03144 Elongation factor Tu domain 2 BDU_RS02690 PF00009 Elongation factor Tu GTP binding domain BDU_RS02690 PF14492 Elongation Factor G, domain II BDU_RS02690 PF00679 Elongation factor G C-terminus BDU_RS02690 PF03764 Elongation factor G, domain IV BDU_RS02715 PF14572 Phosphoribosyl synthetase-associated domain BDU_RS02715 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BDU_RS02730 PF01121 Dephospho-CoA kinase BDU_RS02735 PF01367 5'-3' exonuclease, C-terminal SAM fold BDU_RS02735 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BDU_RS02735 PF00476 DNA polymerase family A BDU_RS02735 PF01612 3'-5' exonuclease BDU_RS02750 PF00072 Response regulator receiver domain BDU_RS02755 PF00533 BRCA1 C Terminus (BRCT) domain BDU_RS02755 PF01653 NAD-dependent DNA ligase adenylation domain BDU_RS02755 PF03120 NAD-dependent DNA ligase OB-fold domain BDU_RS02780 PF00381 PTS HPr component phosphorylation site BDU_RS02785 PF02896 PEP-utilising enzyme, TIM barrel domain BDU_RS02785 PF00391 PEP-utilising enzyme, mobile domain BDU_RS02785 PF05524 PEP-utilising enzyme, N-terminal BDU_RS02790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BDU_RS02795 PF00183 Hsp90 protein BDU_RS02800 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BDU_RS02800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BDU_RS02820 PF01584 CheW-like domain BDU_RS02830 PF01584 CheW-like domain BDU_RS02830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BDU_RS02830 PF02895 Signal transducing histidine kinase, homodimeric domain BDU_RS02830 PF01627 Hpt domain BDU_RS02830 PF07194 P2 response regulator binding domain BDU_RS02835 PF01339 CheB methylesterase BDU_RS02845 PF00072 Response regulator receiver domain BDU_RS02845 PF00486 Transcriptional regulatory protein, C terminal BDU_RS02850 PF01546 Peptidase family M20/M25/M40 BDU_RS02860 PF00696 Amino acid kinase family BDU_RS02865 PF00535 Glycosyl transferase family 2 BDU_RS02870 PF00005 ABC transporter BDU_RS02880 PF00117 Glutamine amidotransferase class-I BDU_RS02880 PF06418 CTP synthase N-terminus BDU_RS02890 PF02743 Cache domain BDU_RS02890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BDU_RS02890 PF00672 HAMP domain BDU_RS02895 PF02811 PHP domain BDU_RS02895 PF01336 OB-fold nucleic acid binding domain BDU_RS02895 PF14579 Helix-hairpin-helix motif BDU_RS02895 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BDU_RS02895 PF07733 Bacterial DNA polymerase III alpha NTPase domain BDU_RS02905 PF17191 RecG wedge domain BDU_RS02905 PF00270 DEAD/DEAH box helicase BDU_RS02905 PF00271 Helicase conserved C-terminal domain BDU_RS02920 PF08245 Mur ligase middle domain BDU_RS02930 PF01588 Putative tRNA binding domain BDU_RS02930 PF09334 tRNA synthetases class I (M) BDU_RS02935 PF01515 Phosphate acetyl/butaryl transferase BDU_RS02940 PF00398 Ribosomal RNA adenine dimethylase BDU_RS02955 PF00501 AMP-binding enzyme BDU_RS02960 PF05746 DALR anticodon binding domain BDU_RS02960 PF03485 Arginyl tRNA synthetase N terminal domain BDU_RS02960 PF00750 tRNA synthetases class I (R) BDU_RS02970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BDU_RS02970 PF00672 HAMP domain BDU_RS02970 PF12729 Four helix bundle sensory module for signal transduction BDU_RS02975 PF00672 HAMP domain BDU_RS02975 PF05227 CHASE3 domain BDU_RS02975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BDU_RS02980 PF01565 FAD binding domain BDU_RS02980 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BDU_RS02985 PF01406 tRNA synthetases class I (C) catalytic domain BDU_RS02995 PF00464 Serine hydroxymethyltransferase BDU_RS03000 PF00684 DnaJ central domain BDU_RS03000 PF01556 DnaJ C terminal domain BDU_RS03000 PF00226 DnaJ domain BDU_RS03010 PF02652 L-lactate permease BDU_RS03015 PF00768 D-alanyl-D-alanine carboxypeptidase BDU_RS03015 PF07943 Penicillin-binding protein 5, C-terminal domain BDU_RS03020 PF03975 CheD chemotactic sensory transduction BDU_RS03025 PF07687 Peptidase dimerisation domain BDU_RS03025 PF01546 Peptidase family M20/M25/M40 BDU_RS03050 PF05697 Bacterial trigger factor protein (TF) BDU_RS03050 PF05698 Bacterial trigger factor protein (TF) C-terminus BDU_RS03055 PF00574 Clp protease BDU_RS03060 PF07724 AAA domain (Cdc48 subfamily) BDU_RS03060 PF10431 C-terminal, D2-small domain, of ClpB protein BDU_RS03060 PF06689 ClpX C4-type zinc finger BDU_RS03065 PF00004 ATPase family associated with various cellular activities (AAA) BDU_RS03065 PF05362 Lon protease (S16) C-terminal proteolytic domain BDU_RS03065 PF02190 ATP-dependent protease La (LON) substrate-binding domain BDU_RS03070 PF00163 Ribosomal protein S4/S9 N-terminal domain BDU_RS03070 PF01479 S4 domain BDU_RS03100 PF00933 Glycosyl hydrolase family 3 N terminal domain BDU_RS03110 PF01965 DJ-1/PfpI family BDU_RS03115 PF00871 Acetokinase family BDU_RS03120 PF03461 TRCF domain BDU_RS03120 PF00270 DEAD/DEAH box helicase BDU_RS03120 PF00271 Helicase conserved C-terminal domain BDU_RS03120 PF02559 CarD-like/TRCF domain BDU_RS03120 PF17757 UvrB interaction domain BDU_RS03130 PF06725 3D domain BDU_RS03130 PF01476 LysM domain BDU_RS03140 PF02127 Aminopeptidase I zinc metalloprotease (M18) BDU_RS03150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BDU_RS03150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BDU_RS03155 PF00294 pfkB family carbohydrate kinase BDU_RS03165 PF13538 UvrD-like helicase C-terminal domain BDU_RS03170 PF12705 PD-(D/E)XK nuclease superfamily BDU_RS03170 PF13361 UvrD-like helicase C-terminal domain BDU_RS03170 PF00580 UvrD/REP helicase N-terminal domain BDU_RS03175 PF17946 RecC C-terminal domain BDU_RS03180 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BDU_RS03180 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BDU_RS03180 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BDU_RS03185 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BDU_RS03185 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BDU_RS03190 PF03553 Na+/H+ antiporter family BDU_RS03200 PF00528 Binding-protein-dependent transport system inner membrane component BDU_RS03205 PF00528 Binding-protein-dependent transport system inner membrane component BDU_RS03210 PF00005 ABC transporter BDU_RS03210 PF08402 TOBE domain BDU_RS03215 PF01926 50S ribosome-binding GTPase BDU_RS03220 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BDU_RS03225 PF02378 Phosphotransferase system, EIIC BDU_RS03225 PF00367 phosphotransferase system, EIIB BDU_RS03225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BDU_RS03245 PF00118 TCP-1/cpn60 chaperonin family BDU_RS03255 PF02699 Preprotein translocase subunit BDU_RS03260 PF02355 Protein export membrane protein BDU_RS03265 PF02355 Protein export membrane protein BDU_RS03275 PF01556 DnaJ C terminal domain BDU_RS03275 PF00226 DnaJ domain BDU_RS03285 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BDU_RS03290 PF00300 Histidine phosphatase superfamily (branch 1) BDU_RS03295 PF01921 tRNA synthetases class I (K) BDU_RS03300 PF07650 KH domain BDU_RS03300 PF01926 50S ribosome-binding GTPase BDU_RS03330 PF01520 N-acetylmuramoyl-L-alanine amidase BDU_RS03340 PF04620 Flagellar filament outer layer protein Flaa BDU_RS03345 PF07194 P2 response regulator binding domain BDU_RS03345 PF01627 Hpt domain BDU_RS03345 PF01584 CheW-like domain BDU_RS03345 PF02895 Signal transducing histidine kinase, homodimeric domain BDU_RS03345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BDU_RS03350 PF01584 CheW-like domain BDU_RS03360 PF00072 Response regulator receiver domain BDU_RS03380 PF13419 Haloacid dehalogenase-like hydrolase BDU_RS03385 PF00005 ABC transporter BDU_RS03390 PF02653 Branched-chain amino acid transport system / permease component BDU_RS03395 PF02653 Branched-chain amino acid transport system / permease component BDU_RS03400 PF02203 Tar ligand binding domain homologue BDU_RS03400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BDU_RS03400 PF00672 HAMP domain BDU_RS03405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BDU_RS03405 PF00672 HAMP domain BDU_RS03405 PF02743 Cache domain BDU_RS03415 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal BDU_RS03415 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal BDU_RS03420 PF01070 FMN-dependent dehydrogenase BDU_RS03425 PF00368 Hydroxymethylglutaryl-coenzyme A reductase BDU_RS03450 PF00188 Cysteine-rich secretory protein family BDU_RS03460 PF00679 Elongation factor G C-terminus BDU_RS03460 PF14492 Elongation Factor G, domain II BDU_RS03460 PF03764 Elongation factor G, domain IV BDU_RS03460 PF00009 Elongation factor Tu GTP binding domain BDU_RS03460 PF03144 Elongation factor Tu domain 2 BDU_RS03470 PF02978 Signal peptide binding domain BDU_RS03470 PF00448 SRP54-type protein, GTPase domain BDU_RS03470 PF02881 SRP54-type protein, helical bundle domain BDU_RS03475 PF00886 Ribosomal protein S16 BDU_RS03485 PF01782 RimM N-terminal domain BDU_RS03490 PF01746 tRNA (Guanine-1)-methyltransferase BDU_RS03495 PF01245 Ribosomal protein L19 BDU_RS03505 PF01467 Cytidylyltransferase-like BDU_RS03510 PF01783 Ribosomal L32p protein family BDU_RS03515 PF00550 Phosphopantetheine attachment site BDU_RS03520 PF00035 Double-stranded RNA binding motif BDU_RS03520 PF14622 Ribonuclease-III-like BDU_RS03525 PF13735 tRNA nucleotidyltransferase domain 2 putative BDU_RS03525 PF12627 Probable RNA and SrmB- binding site of polymerase A BDU_RS03525 PF01743 Poly A polymerase head domain BDU_RS03550 PF02618 YceG-like family BDU_RS03555 PF13662 Toprim domain BDU_RS03555 PF10410 DnaB-helicase binding domain of primase BDU_RS03555 PF08275 DNA primase catalytic core, N-terminal domain BDU_RS03555 PF01807 CHC2 zinc finger BDU_RS03560 PF04545 Sigma-70, region 4 BDU_RS03560 PF03979 Sigma-70 factor, region 1.1 BDU_RS03560 PF04539 Sigma-70 region 3 BDU_RS03560 PF04542 Sigma-70 region 2 BDU_RS03560 PF00140 Sigma-70 factor, region 1.2 BDU_RS03590 PF00905 Penicillin binding protein transpeptidase domain BDU_RS03590 PF03717 Penicillin-binding Protein dimerisation domain BDU_RS03595 PF01098 Cell cycle protein BDU_RS03600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BDU_RS03600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BDU_RS03600 PF03129 Anticodon binding domain BDU_RS03605 PF01066 CDP-alcohol phosphatidyltransferase BDU_RS03620 PF02386 Cation transport protein BDU_RS03630 PF10609 NUBPL iron-transfer P-loop NTPase BDU_RS03635 PF00365 Phosphofructokinase BDU_RS03640 PF07992 Pyridine nucleotide-disulphide oxidoreductase BDU_RS03640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BDU_RS03645 PF00375 Sodium:dicarboxylate symporter family BDU_RS03650 PF00342 Phosphoglucose isomerase BDU_RS03655 PF02195 ParB-like nuclease domain BDU_RS03655 PF17762 HTH domain found in ParB protein BDU_RS03660 PF00905 Penicillin binding protein transpeptidase domain BDU_RS03660 PF17092 Penicillin-binding protein OB-like domain BDU_RS03660 PF00912 Transglycosylase BDU_RS03665 PF07238 PilZ domain BDU_RS03675 PF01300 Telomere recombination BDU_RS03675 PF03481 Putative GTP-binding controlling metal-binding BDU_RS03680 PF03330 Lytic transglycolase BDU_RS03680 PF05036 Sporulation related domain BDU_RS03685 PF13307 Helicase C-terminal domain BDU_RS03685 PF06733 DEAD_2 BDU_RS03690 PF01207 Dihydrouridine synthase (Dus) BDU_RS03695 PF08264 Anticodon-binding domain of tRNA BDU_RS03695 PF10458 Valyl tRNA synthetase tRNA binding arm BDU_RS03695 PF00133 tRNA synthetases class I (I, L, M and V) BDU_RS03700 PF01266 FAD dependent oxidoreductase BDU_RS03700 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BDU_RS03705 PF00166 Chaperonin 10 Kd subunit BDU_RS03710 PF12848 ABC transporter BDU_RS03710 PF00005 ABC transporter BDU_RS03735 PF00633 Helix-hairpin-helix motif BDU_RS03735 PF00730 HhH-GPD superfamily base excision DNA repair protein BDU_RS03740 PF12911 N-terminal TM domain of oligopeptide transport permease C BDU_RS03740 PF00528 Binding-protein-dependent transport system inner membrane component BDU_RS03745 PF00528 Binding-protein-dependent transport system inner membrane component BDU_RS03770 PF09822 ABC-type uncharacterized transport system BDU_RS03780 PF00005 ABC transporter BDU_RS03785 PF00753 Metallo-beta-lactamase superfamily BDU_RS03785 PF12706 Beta-lactamase superfamily domain BDU_RS03790 PF01266 FAD dependent oxidoreductase BDU_RS03790 PF01266 FAD dependent oxidoreductase BDU_RS03795 PF00574 Clp protease BDU_RS03820 PF01551 Peptidase family M23 BDU_RS03825 PF02954 Bacterial regulatory protein, Fis family BDU_RS03825 PF00072 Response regulator receiver domain BDU_RS03825 PF00158 Sigma-54 interaction domain BDU_RS03830 PF00989 PAS fold BDU_RS03830 PF00512 His Kinase A (phospho-acceptor) domain BDU_RS03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BDU_RS03835 PF09115 DNA polymerase III, delta subunit, C terminal BDU_RS03845 PF04101 Glycosyltransferase family 28 C-terminal domain BDU_RS03845 PF03033 Glycosyltransferase family 28 N-terminal domain BDU_RS03855 PF00814 Glycoprotease family BDU_RS03865 PF04545 Sigma-70, region 4 BDU_RS03865 PF03979 Sigma-70 factor, region 1.1 BDU_RS03865 PF00140 Sigma-70 factor, region 1.2 BDU_RS03865 PF04542 Sigma-70 region 2 BDU_RS03865 PF04539 Sigma-70 region 3 BDU_RS03870 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BDU_RS03870 PF10135 Rod binding protein BDU_RS03875 PF02119 Flagellar P-ring protein BDU_RS03885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BDU_RS03885 PF00460 Flagella basal body rod protein BDU_RS03890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BDU_RS03890 PF00460 Flagella basal body rod protein BDU_RS03900 PF00156 Phosphoribosyl transferase domain BDU_RS03905 PF00829 Ribosomal prokaryotic L21 protein BDU_RS03915 PF01016 Ribosomal L27 protein BDU_RS03920 PF01926 50S ribosome-binding GTPase BDU_RS03920 PF01018 GTP1/OBG BDU_RS03925 PF01467 Cytidylyltransferase-like BDU_RS03940 PF04026 SpoVG BDU_RS03950 PF01386 Ribosomal L25p family BDU_RS03950 PF14693 Ribosomal protein TL5, C-terminal domain BDU_RS03955 PF01195 Peptidyl-tRNA hydrolase BDU_RS03960 PF01171 PP-loop family BDU_RS03965 PF00004 ATPase family associated with various cellular activities (AAA) BDU_RS03965 PF17862 AAA+ lid domain BDU_RS03965 PF06480 FtsH Extracellular BDU_RS03965 PF01434 Peptidase family M41 BDU_RS03975 PF17820 PDZ domain BDU_RS03975 PF13180 PDZ domain BDU_RS03990 PF02223 Thymidylate kinase BDU_RS04000 PF07244 Surface antigen variable number repeat BDU_RS04000 PF01103 Surface antigen BDU_RS04015 PF05190 MutS family domain IV BDU_RS04015 PF05188 MutS domain II BDU_RS04015 PF01624 MutS domain I BDU_RS04015 PF00488 MutS domain V BDU_RS04015 PF05192 MutS domain III BDU_RS04025 PF02576 RimP N-terminal domain BDU_RS04030 PF00575 S1 RNA binding domain BDU_RS04030 PF08529 NusA N-terminal domain BDU_RS04030 PF13184 NusA-like KH domain BDU_RS04035 PF04760 Translation initiation factor IF-2, N-terminal region BDU_RS04035 PF11987 Translation-initiation factor 2 BDU_RS04035 PF00009 Elongation factor Tu GTP binding domain BDU_RS04040 PF02033 Ribosome-binding factor A BDU_RS04045 PF01509 TruB family pseudouridylate synthase (N terminal domain) BDU_RS04050 PF00312 Ribosomal protein S15 BDU_RS04055 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BDU_RS04055 PF00013 KH domain BDU_RS04055 PF03725 3' exoribonuclease family, domain 2 BDU_RS04055 PF01138 3' exoribonuclease family, domain 1 BDU_RS04055 PF00575 S1 RNA binding domain BDU_RS04075 PF01702 Queuine tRNA-ribosyltransferase BDU_RS04080 PF03023 Lipid II flippase MurJ BDU_RS04090 PF02441 Flavoprotein BDU_RS04090 PF04127 DNA / pantothenate metabolism flavoprotein BDU_RS04095 PF00474 Sodium:solute symporter family BDU_RS04100 PF00849 RNA pseudouridylate synthase BDU_RS04100 PF01479 S4 domain BDU_RS04110 PF02875 Mur ligase family, glutamate ligase domain BDU_RS04110 PF08245 Mur ligase middle domain BDU_RS04110 PF01225 Mur ligase family, catalytic domain BDU_RS04120 PF00474 Sodium:solute symporter family BDU_RS04125 PF01479 S4 domain BDU_RS04125 PF00849 RNA pseudouridylate synthase BDU_RS04135 PF08245 Mur ligase middle domain BDU_RS04135 PF02875 Mur ligase family, glutamate ligase domain BDU_RS04135 PF01225 Mur ligase family, catalytic domain BDU_RS04180 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BDU_RS04180 PF00367 phosphotransferase system, EIIB BDU_RS04180 PF02378 Phosphotransferase system, EIIC BDU_RS04185 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BDU_RS04185 PF04408 Helicase associated domain (HA2) BDU_RS04185 PF00271 Helicase conserved C-terminal domain BDU_RS04185 PF00270 DEAD/DEAH box helicase BDU_RS04190 PF01131 DNA topoisomerase BDU_RS04190 PF01751 Toprim domain BDU_RS04190 PF13368 Topoisomerase C-terminal repeat BDU_RS04195 PF00149 Calcineurin-like phosphoesterase BDU_RS04200 PF13476 AAA domain BDU_RS04205 PF00480 ROK family BDU_RS04210 PF03932 CutC family BDU_RS04220 PF00133 tRNA synthetases class I (I, L, M and V) BDU_RS04220 PF08264 Anticodon-binding domain of tRNA BDU_RS04225 PF07724 AAA domain (Cdc48 subfamily) BDU_RS04225 PF17871 AAA lid domain BDU_RS04225 PF02861 Clp amino terminal domain, pathogenicity island component BDU_RS04225 PF10431 C-terminal, D2-small domain, of ClpB protein BDU_RS04225 PF00004 ATPase family associated with various cellular activities (AAA) BDU_RS04230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BDU_RS04230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BDU_RS04230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BDU_RS04230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BDU_RS04235 PF04851 Type III restriction enzyme, res subunit BDU_RS04235 PF00271 Helicase conserved C-terminal domain BDU_RS04235 PF17757 UvrB interaction domain BDU_RS04235 PF12344 Ultra-violet resistance protein B BDU_RS04235 PF02151 UvrB/uvrC motif BDU_RS04240 PF17760 UvrA interaction domain BDU_RS04240 PF17755 UvrA DNA-binding domain BDU_RS04240 PF00005 ABC transporter BDU_RS04265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BDU_RS04265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BDU_RS04270 PF03606 C4-dicarboxylate anaerobic carrier BDU_RS04275 PF00696 Amino acid kinase family BDU_RS04280 PF00860 Permease family BDU_RS04325 PF00921 Borrelia lipoprotein BDU_RS04650 PF06470 SMC proteins Flexible Hinge Domain BDU_RS04650 PF02463 RecF/RecN/SMC N terminal domain BDU_RS04655 PF06470 SMC proteins Flexible Hinge Domain BDU_RS04655 PF02463 RecF/RecN/SMC N terminal domain BDU_RS04895 PF02874 ATP synthase alpha/beta family, beta-barrel domain BDU_RS04895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BDU_RS04895 PF16886 ATPsynthase alpha/beta subunit N-term extension BDU_RS05210 PF00933 Glycosyl hydrolase family 3 N terminal domain BDU_RS05860 PF10372 Bacterial membrane-spanning protein N-terminus BDU_RS05860 PF02457 DisA bacterial checkpoint controller nucleotide-binding BDU_RS05875 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) BDU_RS05890 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BDU_RS05890 PF00271 Helicase conserved C-terminal domain BDU_RS05890 PF17764 3′ DNA-binding domain (3′BD) BDU_RS05890 PF18074 Primosomal protein N C-terminal domain BDU_RS05890 PF04851 Type III restriction enzyme, res subunit BDU_RS05985 PF00579 tRNA synthetases class I (W and Y) BDU_RS06635 PF00921 Borrelia lipoprotein BDU_RS06670 PF00933 Glycosyl hydrolase family 3 N terminal domain BDU_RS06740 PF04851 Type III restriction enzyme, res subunit BDU_RS06740 PF18074 Primosomal protein N C-terminal domain BDU_RS06740 PF00271 Helicase conserved C-terminal domain BDU_RS06740 PF17764 3′ DNA-binding domain (3′BD) BDU_RS06740 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BDU_RS06815 PF00921 Borrelia lipoprotein BDU_RS06985 PF01330 RuvA N terminal domain BDU_RS07160 PF00921 Borrelia lipoprotein BDU_RS07285 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BDU_RS07285 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BDU_RS07440 PF00365 Phosphofructokinase