KK9_RS00070	SM00487	DEAD-like helicases superfamily
KK9_RS00070	SM00490	helicase superfamily c-terminal domain
KK9_RS00080	SM00450	Rhodanese Homology Domain
KK9_RS00110	SM00382	ATPases associated with a variety of cellular activities
KK9_RS00115	SM00278	Helix-hairpin-helix DNA-binding motif class 1
KK9_RS00175	SM00434	DNA Topoisomerase IV
KK9_RS00180	SM00387	Histidine kinase-like ATPases
KK9_RS00180	SM00433	TopoisomeraseII
KK9_RS00185	SM00563	Phosphate acyltransferases
KK9_RS00200	SM00138	Methyltransferase, chemotaxis proteins 
KK9_RS00230	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
KK9_RS00255	SM00986	Uracil DNA glycosylase superfamily
KK9_RS00255	SM00987	UreE urease accessory protein, C-terminal domain 
KK9_RS00275	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
KK9_RS00280	SM00028	Tetratricopeptide repeats
KK9_RS00285	SM01091	Transporter associated domain
KK9_RS00305	SM00740	KK9_RS00305
KK9_RS00360	SM00937	KK9_RS00360
KK9_RS00370	SM00382	ATPases associated with a variety of cellular activities
KK9_RS00370	SM00962	SRP54-type protein, GTPase domain
KK9_RS00385	SM00382	ATPases associated with a variety of cellular activities
KK9_RS00415	SM00382	ATPases associated with a variety of cellular activities
KK9_RS00475	SM00463	Small MutS-related domain
KK9_RS00475	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
KK9_RS00475	SM00534	ATPase domain of DNA mismatch repair MUTS family
KK9_RS00505	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
KK9_RS00515	SM00028	Tetratricopeptide repeats
KK9_RS00575	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
KK9_RS00620	SM00316	Ribosomal protein S1-like RNA-binding domain
KK9_RS00630	SM00363	S4 RNA-binding domain
KK9_RS00640	SM00382	ATPases associated with a variety of cellular activities
KK9_RS00655	SM00028	Tetratricopeptide repeats
KK9_RS00665	SM00740	KK9_RS00665
KK9_RS00705	SM00382	ATPases associated with a variety of cellular activities
KK9_RS00735	SM00957	SecA DEAD-like domain
KK9_RS00735	SM00958	SecA preprotein cross-linking domain
KK9_RS00765	SM01005	Alanine racemase, C-terminal domain
KK9_RS00805	SM00316	Ribosomal protein S1-like RNA-binding domain
KK9_RS00810	SM00287	Bacterial SH3 domain homologues
KK9_RS00815	SM00028	Tetratricopeptide repeats
KK9_RS00820	SM00327	von Willebrand factor (vWF) type A domain
KK9_RS00825	SM00327	von Willebrand factor (vWF) type A domain
KK9_RS00835	SM00327	von Willebrand factor (vWF) type A domain
KK9_RS00850	SM01228	KK9_RS00850
KK9_RS00930	SM00028	Tetratricopeptide repeats
KK9_RS00935	SM00937	KK9_RS00935
KK9_RS00945	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
KK9_RS00945	SM00954	Region found in RelA / SpoT proteins
KK9_RS00970	SM00116	Domain in cystathionine beta-synthase and other proteins.
KK9_RS00970	SM01091	Transporter associated domain
KK9_RS00975	SM00244	prohibitin homologues
KK9_RS00980	SM00244	prohibitin homologues
KK9_RS01015	SM00028	Tetratricopeptide repeats
KK9_RS01020	SM00028	Tetratricopeptide repeats
KK9_RS01020	SM00671	Sel1-like repeats.
KK9_RS01025	SM00853	MutL C terminal dimerisation domain
KK9_RS01025	SM01340	KK9_RS01025
KK9_RS01040	SM00841	Elongation factor P, C-terminal
KK9_RS01040	SM01185	KK9_RS01040
KK9_RS01060	SM00382	ATPases associated with a variety of cellular activities
KK9_RS01070	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
KK9_RS01105	SM01264	KK9_RS01105
KK9_RS01115	SM00357	Cold shock protein domain
KK9_RS01115	SM00382	ATPases associated with a variety of cellular activities
KK9_RS01125	SM00411	bacterial (prokaryotic) histone like domain
KK9_RS01230	SM00382	ATPases associated with a variety of cellular activities
KK9_RS01230	SM00464	Found in ATP-dependent protease La (LON)
KK9_RS01250	SM00843	KK9_RS01250
KK9_RS01270	SM00028	Tetratricopeptide repeats
KK9_RS01275	SM00257	Lysin motif
KK9_RS01300	SM01245	KK9_RS01300
KK9_RS01315	SM00382	ATPases associated with a variety of cellular activities
KK9_RS01315	SM00962	SRP54-type protein, GTPase domain
KK9_RS01405	SM00382	ATPases associated with a variety of cellular activities
KK9_RS01440	SM00382	ATPases associated with a variety of cellular activities
KK9_RS01440	SM01086	C-terminal, D2-small domain, of ClpB protein
KK9_RS01455	SM00028	Tetratricopeptide repeats
KK9_RS01460	SM00864	Tubulin/FtsZ family, GTPase domain
KK9_RS01460	SM00865	Tubulin/FtsZ family, C-terminal domain
KK9_RS01465	SM00842	Cell division protein FtsA
KK9_RS01520	SM00260	Two component signalling adaptor domain
KK9_RS01580	SM00028	Tetratricopeptide repeats
KK9_RS01585	SM00563	Phosphate acyltransferases
KK9_RS01615	SM00382	ATPases associated with a variety of cellular activities
KK9_RS01620	SM00382	ATPases associated with a variety of cellular activities
KK9_RS01630	SM01192	KK9_RS01630
KK9_RS01630	SM01193	KK9_RS01630
KK9_RS01650	SM00845	GatB domain
KK9_RS01720	SM01058	CarD-like/TRCF domain
KK9_RS01735	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
KK9_RS01735	SM00245	tail specific protease
KK9_RS01750	SM00052	Putative diguanylate phosphodiesterase
KK9_RS01755	SM00851	MGS-like domain
KK9_RS01780	SM00382	ATPases associated with a variety of cellular activities
KK9_RS01785	SM00363	S4 RNA-binding domain
KK9_RS01805	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
KK9_RS01835	SM00924	MgtE intracellular N domain
KK9_RS01885	SM00663	RNA polymerase I subunit A N-terminus
KK9_RS01910	SM00649	Ribosomal protein L11/L12
KK9_RS01915	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
KK9_RS01915	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
KK9_RS01950	SM00248	ankyrin repeats
KK9_RS01965	SM00946	Prolyl-tRNA synthetase, C-terminal
KK9_RS02005	SM00477	DNA/RNA non-specific endonuclease
KK9_RS02005	SM00892	DNA/RNA non-specific endonuclease
KK9_RS02020	SM00138	Methyltransferase, chemotaxis proteins 
KK9_RS02045	SM00267	diguanylate cyclase
KK9_RS02045	SM00448	cheY-homologous receiver domain
KK9_RS02050	SM00387	Histidine kinase-like ATPases
KK9_RS02050	SM00388	His Kinase A (phosphoacceptor) domain
KK9_RS02050	SM00448	cheY-homologous receiver domain
KK9_RS02140	SM00470	ParB-like nuclease domain
KK9_RS02145	SM00434	DNA Topoisomerase IV
KK9_RS02150	SM00387	Histidine kinase-like ATPases
KK9_RS02150	SM00433	TopoisomeraseII
KK9_RS02155	SM00382	ATPases associated with a variety of cellular activities
KK9_RS02155	SM00760	Bacterial dnaA protein helix-turn-helix domain
KK9_RS02160	SM00480	DNA polymerase III beta subunit
KK9_RS02185	SM00393	Putative single-stranded nucleic acids-binding domain
KK9_RS02185	SM01245	KK9_RS02185
KK9_RS02205	SM00970	Sexual stage antigen s48/45 domain
KK9_RS02255	SM00465	GIY-YIG type nucleases (URI domain)
KK9_RS02260	SM00060	Fibronectin type 3 domain
KK9_RS02265	SM00028	Tetratricopeptide repeats
KK9_RS02295	SM00382	ATPases associated with a variety of cellular activities
KK9_RS02305	SM00562	KK9_RS02305
KK9_RS02320	SM00382	ATPases associated with a variety of cellular activities
KK9_RS02370	SM01403	KK9_RS02370
KK9_RS02390	SM01382	KK9_RS02390
KK9_RS02390	SM01383	KK9_RS02390
KK9_RS02405	SM00322	K homology RNA-binding domain
KK9_RS02425	SM01374	KK9_RS02425
KK9_RS02430	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
KK9_RS02490	SM00662	RNA polymerases D
KK9_RS02500	SM00322	K homology RNA-binding domain
KK9_RS02500	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
KK9_RS02515	SM00909	Sporulation and spore germination
KK9_RS02545	SM00873	B3/4 domain
KK9_RS02545	SM00874	tRNA synthetase B5 domain
KK9_RS02555	SM00967	RNA 2'-O ribose methyltransferase substrate binding
KK9_RS02560	SM00271	DnaJ molecular chaperone homology domain
KK9_RS02620	SM00849	Metallo-beta-lactamase superfamily
KK9_RS02650	SM00028	Tetratricopeptide repeats
KK9_RS02665	SM00838	Elongation factor G C-terminus
KK9_RS02665	SM00889	Elongation factor G, domain IV
KK9_RS02675	SM00028	Tetratricopeptide repeats
KK9_RS02685	SM01400	KK9_RS02685
KK9_RS02705	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
KK9_RS02705	SM00474	3'-5' exonuclease
KK9_RS02705	SM00475	5'-3' exonuclease
KK9_RS02705	SM00482	DNA polymerase A domain
KK9_RS02720	SM00448	cheY-homologous receiver domain
KK9_RS02725	SM00278	Helix-hairpin-helix DNA-binding motif class 1
KK9_RS02725	SM00292	breast cancer carboxy-terminal domain
KK9_RS02725	SM00532	Ligase N family
KK9_RS02765	SM00387	Histidine kinase-like ATPases
KK9_RS02770	SM01350	KK9_RS02770
KK9_RS02790	SM00260	Two component signalling adaptor domain
KK9_RS02800	SM00073	Histidine Phosphotransfer domain
KK9_RS02800	SM00260	Two component signalling adaptor domain
KK9_RS02800	SM00387	Histidine kinase-like ATPases
KK9_RS02800	SM01231	KK9_RS02800
KK9_RS02815	SM00448	cheY-homologous receiver domain
KK9_RS02835	SM00382	ATPases associated with a variety of cellular activities
KK9_RS02865	SM00481	DNA polymerase alpha chain like domain
KK9_RS02875	SM00487	DEAD-like helicases superfamily
KK9_RS02875	SM00490	helicase superfamily c-terminal domain
KK9_RS02920	SM00650	Ribosomal RNA adenine dimethylases
KK9_RS02940	SM00836	DALR anticodon binding domain
KK9_RS02940	SM01016	Arginyl tRNA synthetase N terminal dom
KK9_RS02950	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
KK9_RS02955	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
KK9_RS02980	SM00271	DnaJ molecular chaperone homology domain
KK9_RS02995	SM00936	Penicillin-binding protein 5, C-terminal domain 
KK9_RS03045	SM00382	ATPases associated with a variety of cellular activities
KK9_RS03045	SM00994	ClpX C4-type zinc finger
KK9_RS03045	SM01086	C-terminal, D2-small domain, of ClpB protein
KK9_RS03050	SM00382	ATPases associated with a variety of cellular activities
KK9_RS03050	SM00464	Found in ATP-dependent protease La (LON)
KK9_RS03055	SM00363	S4 RNA-binding domain
KK9_RS03055	SM01390	KK9_RS03055
KK9_RS03105	SM00487	DEAD-like helicases superfamily
KK9_RS03105	SM00490	helicase superfamily c-terminal domain
KK9_RS03105	SM00982	KK9_RS03105
KK9_RS03105	SM01058	CarD-like/TRCF domain
KK9_RS03115	SM00257	Lysin motif
KK9_RS03160	SM00382	ATPases associated with a variety of cellular activities
KK9_RS03210	SM00382	ATPases associated with a variety of cellular activities
KK9_RS03255	SM01323	KK9_RS03255
KK9_RS03275	SM00271	DnaJ molecular chaperone homology domain
KK9_RS03290	SM00855	Phosphoglycerate mutase family
KK9_RS03330	SM00646	KK9_RS03330
KK9_RS03345	SM00073	Histidine Phosphotransfer domain
KK9_RS03345	SM00260	Two component signalling adaptor domain
KK9_RS03345	SM00387	Histidine kinase-like ATPases
KK9_RS03345	SM01231	KK9_RS03345
KK9_RS03350	SM00138	Methyltransferase, chemotaxis proteins 
KK9_RS03350	SM00260	Two component signalling adaptor domain
KK9_RS03360	SM00448	cheY-homologous receiver domain
KK9_RS03385	SM00382	ATPases associated with a variety of cellular activities
KK9_RS03400	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
KK9_RS03405	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
KK9_RS03460	SM00838	Elongation factor G C-terminus
KK9_RS03460	SM00889	Elongation factor G, domain IV
KK9_RS03470	SM00962	SRP54-type protein, GTPase domain
KK9_RS03470	SM00963	SRP54-type protein, helical bundle domain
KK9_RS03520	SM00358	Double-stranded RNA binding motif
KK9_RS03520	SM00535	Ribonuclease III family
KK9_RS03555	SM00400	zinc finger
KK9_RS03555	SM00493	KK9_RS03555
KK9_RS03570	SM00028	Tetratricopeptide repeats
KK9_RS03600	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
KK9_RS03615	SM01118	KK9_RS03615
KK9_RS03655	SM00470	ParB-like nuclease domain
KK9_RS03700	SM00883	Chaperonin 10 Kd subunit
KK9_RS03705	SM00382	ATPases associated with a variety of cellular activities
KK9_RS03730	SM00478	endonuclease III
KK9_RS03770	SM00382	ATPases associated with a variety of cellular activities
KK9_RS03775	SM00849	Metallo-beta-lactamase superfamily
KK9_RS03810	SM00257	Lysin motif
KK9_RS03815	SM00382	ATPases associated with a variety of cellular activities
KK9_RS03815	SM00448	cheY-homologous receiver domain
KK9_RS03820	SM00387	Histidine kinase-like ATPases
KK9_RS03820	SM00388	His Kinase A (phosphoacceptor) domain
KK9_RS03955	SM00382	ATPases associated with a variety of cellular activities
KK9_RS03990	SM00935	Outer membrane protein (OmpH-like)
KK9_RS03995	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
KK9_RS03995	SM00534	ATPase domain of DNA mismatch repair MUTS family
KK9_RS04010	SM00316	Ribosomal protein S1-like RNA-binding domain
KK9_RS04030	SM01387	KK9_RS04030
KK9_RS04035	SM00316	Ribosomal protein S1-like RNA-binding domain
KK9_RS04035	SM00322	K homology RNA-binding domain
KK9_RS04080	SM00363	S4 RNA-binding domain
KK9_RS04135	SM00487	DEAD-like helicases superfamily
KK9_RS04135	SM00490	helicase superfamily c-terminal domain
KK9_RS04135	SM00847	Helicase associated domain (HA2)  Add an annotation
KK9_RS04140	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
KK9_RS04140	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
KK9_RS04140	SM00493	KK9_RS04140
KK9_RS04170	SM00382	ATPases associated with a variety of cellular activities
KK9_RS04170	SM01086	C-terminal, D2-small domain, of ClpB protein
KK9_RS04180	SM00487	DEAD-like helicases superfamily
KK9_RS04180	SM00490	helicase superfamily c-terminal domain
KK9_RS04330	SM00278	Helix-hairpin-helix DNA-binding motif class 1
