X966_RS00065	SM00487	DEAD-like helicases superfamily
X966_RS00065	SM00490	helicase superfamily c-terminal domain
X966_RS00075	SM00450	Rhodanese Homology Domain
X966_RS00105	SM00382	ATPases associated with a variety of cellular activities
X966_RS00110	SM00278	Helix-hairpin-helix DNA-binding motif class 1
X966_RS00170	SM00434	DNA Topoisomerase IV
X966_RS00175	SM00387	Histidine kinase-like ATPases
X966_RS00175	SM00433	TopoisomeraseII
X966_RS00180	SM00563	Phosphate acyltransferases
X966_RS00195	SM00138	Methyltransferase, chemotaxis proteins 
X966_RS00225	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
X966_RS00250	SM00986	Uracil DNA glycosylase superfamily
X966_RS00250	SM00987	UreE urease accessory protein, C-terminal domain 
X966_RS00270	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
X966_RS00275	SM00028	Tetratricopeptide repeats
X966_RS00280	SM01091	Transporter associated domain
X966_RS00300	SM00740	X966_RS00300
X966_RS00350	SM00937	X966_RS00350
X966_RS00360	SM00382	ATPases associated with a variety of cellular activities
X966_RS00360	SM00962	SRP54-type protein, GTPase domain
X966_RS00375	SM00382	ATPases associated with a variety of cellular activities
X966_RS00405	SM00382	ATPases associated with a variety of cellular activities
X966_RS00415	SM00838	Elongation factor G C-terminus
X966_RS00465	SM00463	Small MutS-related domain
X966_RS00465	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
X966_RS00465	SM00534	ATPase domain of DNA mismatch repair MUTS family
X966_RS00495	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
X966_RS00505	SM00028	Tetratricopeptide repeats
X966_RS00565	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
X966_RS00615	SM00316	Ribosomal protein S1-like RNA-binding domain
X966_RS00635	SM00382	ATPases associated with a variety of cellular activities
X966_RS00650	SM00028	Tetratricopeptide repeats
X966_RS00660	SM00740	X966_RS00660
X966_RS00705	SM00382	ATPases associated with a variety of cellular activities
X966_RS00735	SM00957	SecA DEAD-like domain
X966_RS00735	SM00958	SecA preprotein cross-linking domain
X966_RS00755	SM01005	Alanine racemase, C-terminal domain
X966_RS00795	SM00316	Ribosomal protein S1-like RNA-binding domain
X966_RS00800	SM00287	Bacterial SH3 domain homologues
X966_RS00805	SM00028	Tetratricopeptide repeats
X966_RS00810	SM00327	von Willebrand factor (vWF) type A domain
X966_RS00815	SM00327	von Willebrand factor (vWF) type A domain
X966_RS00840	SM01228	X966_RS00840
X966_RS00920	SM00028	Tetratricopeptide repeats
X966_RS00925	SM00937	X966_RS00925
X966_RS00935	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
X966_RS00935	SM00954	Region found in RelA / SpoT proteins
X966_RS00960	SM00116	Domain in cystathionine beta-synthase and other proteins.
X966_RS00960	SM01091	Transporter associated domain
X966_RS00965	SM00244	prohibitin homologues
X966_RS00970	SM00244	prohibitin homologues
X966_RS01000	SM00028	Tetratricopeptide repeats
X966_RS01015	SM00028	Tetratricopeptide repeats
X966_RS01015	SM00671	Sel1-like repeats.
X966_RS01020	SM00853	MutL C terminal dimerisation domain
X966_RS01020	SM01340	X966_RS01020
X966_RS01040	SM00841	Elongation factor P, C-terminal
X966_RS01040	SM01185	X966_RS01040
X966_RS01060	SM00382	ATPases associated with a variety of cellular activities
X966_RS01070	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
X966_RS01105	SM01264	X966_RS01105
X966_RS01115	SM00357	Cold shock protein domain
X966_RS01115	SM00382	ATPases associated with a variety of cellular activities
X966_RS01125	SM00411	bacterial (prokaryotic) histone like domain
X966_RS01245	SM00382	ATPases associated with a variety of cellular activities
X966_RS01245	SM00464	Found in ATP-dependent protease La (LON)
X966_RS01270	SM00843	X966_RS01270
X966_RS01290	SM00028	Tetratricopeptide repeats
X966_RS01295	SM00257	Lysin motif
X966_RS01320	SM01245	X966_RS01320
X966_RS01335	SM00382	ATPases associated with a variety of cellular activities
X966_RS01335	SM00962	SRP54-type protein, GTPase domain
X966_RS01425	SM00382	ATPases associated with a variety of cellular activities
X966_RS01460	SM00382	ATPases associated with a variety of cellular activities
X966_RS01460	SM01086	C-terminal, D2-small domain, of ClpB protein
X966_RS01475	SM00028	Tetratricopeptide repeats
X966_RS01480	SM00864	Tubulin/FtsZ family, GTPase domain
X966_RS01480	SM00865	Tubulin/FtsZ family, C-terminal domain
X966_RS01485	SM00842	Cell division protein FtsA
X966_RS01535	SM00382	ATPases associated with a variety of cellular activities
X966_RS01545	SM00260	Two component signalling adaptor domain
X966_RS01605	SM00028	Tetratricopeptide repeats
X966_RS01610	SM00563	Phosphate acyltransferases
X966_RS01635	SM00382	ATPases associated with a variety of cellular activities
X966_RS01640	SM00382	ATPases associated with a variety of cellular activities
X966_RS01650	SM01192	X966_RS01650
X966_RS01650	SM01193	X966_RS01650
X966_RS01670	SM00845	GatB domain
X966_RS01740	SM01058	CarD-like/TRCF domain
X966_RS01755	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
X966_RS01755	SM00245	tail specific protease
X966_RS01775	SM00052	Putative diguanylate phosphodiesterase
X966_RS01795	SM00382	ATPases associated with a variety of cellular activities
X966_RS01800	SM00363	S4 RNA-binding domain
X966_RS01820	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
X966_RS01845	SM00116	Domain in cystathionine beta-synthase and other proteins.
X966_RS01845	SM00924	MgtE intracellular N domain
X966_RS01885	SM00663	RNA polymerase I subunit A N-terminus
X966_RS01910	SM00649	Ribosomal protein L11/L12
X966_RS01915	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
X966_RS01915	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
X966_RS01955	SM00248	ankyrin repeats
X966_RS01965	SM00946	Prolyl-tRNA synthetase, C-terminal
X966_RS01995	SM00477	DNA/RNA non-specific endonuclease
X966_RS01995	SM00892	DNA/RNA non-specific endonuclease
X966_RS02010	SM00138	Methyltransferase, chemotaxis proteins 
X966_RS02015	SM00448	cheY-homologous receiver domain
X966_RS02035	SM00267	diguanylate cyclase
X966_RS02035	SM00448	cheY-homologous receiver domain
X966_RS02040	SM00387	Histidine kinase-like ATPases
X966_RS02040	SM00388	His Kinase A (phosphoacceptor) domain
X966_RS02040	SM00448	cheY-homologous receiver domain
X966_RS02065	SM00788	Adenylosuccinate synthetase
X966_RS02070	SM00998	Adenylosuccinate lyase C-terminus
X966_RS02095	SM00382	ATPases associated with a variety of cellular activities
X966_RS02130	SM00470	ParB-like nuclease domain
X966_RS02135	SM00434	DNA Topoisomerase IV
X966_RS02140	SM00387	Histidine kinase-like ATPases
X966_RS02140	SM00433	TopoisomeraseII
X966_RS02145	SM00382	ATPases associated with a variety of cellular activities
X966_RS02145	SM00760	Bacterial dnaA protein helix-turn-helix domain
X966_RS02150	SM00480	DNA polymerase III beta subunit
X966_RS02180	SM00393	Putative single-stranded nucleic acids-binding domain
X966_RS02180	SM01245	X966_RS02180
X966_RS02205	SM00970	Sexual stage antigen s48/45 domain
X966_RS02250	SM00465	GIY-YIG type nucleases (URI domain)
X966_RS02260	SM00028	Tetratricopeptide repeats
X966_RS02290	SM00382	ATPases associated with a variety of cellular activities
X966_RS02300	SM00493	X966_RS02300
X966_RS02305	SM00562	X966_RS02305
X966_RS02325	SM00382	ATPases associated with a variety of cellular activities
X966_RS02375	SM01403	X966_RS02375
X966_RS02395	SM01382	X966_RS02395
X966_RS02395	SM01383	X966_RS02395
X966_RS02410	SM00322	K homology RNA-binding domain
X966_RS02430	SM01374	X966_RS02430
X966_RS02435	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
X966_RS02500	SM00662	RNA polymerases D
X966_RS02510	SM00322	K homology RNA-binding domain
X966_RS02510	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
X966_RS02525	SM00909	Sporulation and spore germination
X966_RS02555	SM00873	B3/4 domain
X966_RS02555	SM00874	tRNA synthetase B5 domain
X966_RS02570	SM00271	DnaJ molecular chaperone homology domain
X966_RS02595	SM00331	Sigma factor PP2C-like phosphatases
X966_RS02630	SM00849	Metallo-beta-lactamase superfamily
X966_RS02670	SM00028	Tetratricopeptide repeats
X966_RS02685	SM00838	Elongation factor G C-terminus
X966_RS02685	SM00889	Elongation factor G, domain IV
X966_RS02700	SM00028	Tetratricopeptide repeats
X966_RS02710	SM01400	X966_RS02710
X966_RS02730	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
X966_RS02730	SM00474	3'-5' exonuclease
X966_RS02730	SM00475	5'-3' exonuclease
X966_RS02730	SM00479	X966_RS02730
X966_RS02730	SM00482	DNA polymerase A domain
X966_RS02745	SM00448	cheY-homologous receiver domain
X966_RS02750	SM00292	breast cancer carboxy-terminal domain
X966_RS02750	SM00532	Ligase N family
X966_RS02790	SM00387	Histidine kinase-like ATPases
X966_RS02795	SM01350	X966_RS02795
X966_RS02815	SM00260	Two component signalling adaptor domain
X966_RS02825	SM00073	Histidine Phosphotransfer domain
X966_RS02825	SM00260	Two component signalling adaptor domain
X966_RS02825	SM00387	Histidine kinase-like ATPases
X966_RS02825	SM01231	X966_RS02825
X966_RS02840	SM00448	cheY-homologous receiver domain
X966_RS02865	SM00382	ATPases associated with a variety of cellular activities
X966_RS02890	SM00481	DNA polymerase alpha chain like domain
X966_RS02900	SM00487	DEAD-like helicases superfamily
X966_RS02900	SM00490	helicase superfamily c-terminal domain
X966_RS02940	SM00650	Ribosomal RNA adenine dimethylases
X966_RS02960	SM00836	DALR anticodon binding domain
X966_RS02960	SM01016	Arginyl tRNA synthetase N terminal dom
X966_RS02970	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
X966_RS02975	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
X966_RS03000	SM00271	DnaJ molecular chaperone homology domain
X966_RS03060	SM00382	ATPases associated with a variety of cellular activities
X966_RS03060	SM00994	ClpX C4-type zinc finger
X966_RS03060	SM01086	C-terminal, D2-small domain, of ClpB protein
X966_RS03065	SM00382	ATPases associated with a variety of cellular activities
X966_RS03065	SM00464	Found in ATP-dependent protease La (LON)
X966_RS03070	SM00363	S4 RNA-binding domain
X966_RS03070	SM01390	X966_RS03070
X966_RS03120	SM00487	DEAD-like helicases superfamily
X966_RS03120	SM00490	helicase superfamily c-terminal domain
X966_RS03120	SM00982	X966_RS03120
X966_RS03120	SM01058	CarD-like/TRCF domain
X966_RS03130	SM00257	Lysin motif
X966_RS03140	SM00493	X966_RS03140
X966_RS03170	SM00382	ATPases associated with a variety of cellular activities
X966_RS03215	SM00382	ATPases associated with a variety of cellular activities
X966_RS03260	SM01323	X966_RS03260
X966_RS03280	SM00271	DnaJ molecular chaperone homology domain
X966_RS03295	SM00855	Phosphoglycerate mutase family
X966_RS03305	SM00382	ATPases associated with a variety of cellular activities
X966_RS03335	SM00646	X966_RS03335
X966_RS03350	SM00073	Histidine Phosphotransfer domain
X966_RS03350	SM00260	Two component signalling adaptor domain
X966_RS03350	SM00387	Histidine kinase-like ATPases
X966_RS03350	SM01231	X966_RS03350
X966_RS03355	SM00138	Methyltransferase, chemotaxis proteins 
X966_RS03355	SM00260	Two component signalling adaptor domain
X966_RS03365	SM00448	cheY-homologous receiver domain
X966_RS03390	SM00382	ATPases associated with a variety of cellular activities
X966_RS03405	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
X966_RS03410	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
X966_RS03465	SM00838	Elongation factor G C-terminus
X966_RS03465	SM00889	Elongation factor G, domain IV
X966_RS03475	SM00382	ATPases associated with a variety of cellular activities
X966_RS03475	SM00962	SRP54-type protein, GTPase domain
X966_RS03475	SM00963	SRP54-type protein, helical bundle domain
X966_RS03535	SM00358	Double-stranded RNA binding motif
X966_RS03535	SM00535	Ribonuclease III family
X966_RS03570	SM00400	zinc finger
X966_RS03570	SM00493	X966_RS03570
X966_RS03585	SM00028	Tetratricopeptide repeats
X966_RS03615	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
X966_RS03670	SM00470	ParB-like nuclease domain
X966_RS03685	SM00028	Tetratricopeptide repeats
X966_RS03700	SM00487	DEAD-like helicases superfamily
X966_RS03700	SM00491	X966_RS03700
X966_RS03725	SM00883	Chaperonin 10 Kd subunit
X966_RS03730	SM00382	ATPases associated with a variety of cellular activities
X966_RS03735	SM00564	beta-propeller repeat
X966_RS03760	SM00478	endonuclease III
X966_RS03805	SM00382	ATPases associated with a variety of cellular activities
X966_RS03810	SM00849	Metallo-beta-lactamase superfamily
X966_RS03840	SM00257	Lysin motif
X966_RS03845	SM00382	ATPases associated with a variety of cellular activities
X966_RS03845	SM00448	cheY-homologous receiver domain
X966_RS03850	SM00387	Histidine kinase-like ATPases
X966_RS03850	SM00388	His Kinase A (phosphoacceptor) domain
X966_RS03985	SM00382	ATPases associated with a variety of cellular activities
X966_RS03995	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
X966_RS04025	SM00935	Outer membrane protein (OmpH-like)
X966_RS04035	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
X966_RS04035	SM00534	ATPase domain of DNA mismatch repair MUTS family
X966_RS04050	SM00316	Ribosomal protein S1-like RNA-binding domain
X966_RS04070	SM01387	X966_RS04070
X966_RS04075	SM00316	Ribosomal protein S1-like RNA-binding domain
X966_RS04075	SM00322	K homology RNA-binding domain
X966_RS04120	SM00363	S4 RNA-binding domain
X966_RS04180	SM00487	DEAD-like helicases superfamily
X966_RS04180	SM00490	helicase superfamily c-terminal domain
X966_RS04180	SM00847	Helicase associated domain (HA2)  Add an annotation
X966_RS04185	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
X966_RS04185	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
X966_RS04185	SM00493	X966_RS04185
X966_RS04220	SM00382	ATPases associated with a variety of cellular activities
X966_RS04220	SM01086	C-terminal, D2-small domain, of ClpB protein
X966_RS04230	SM00487	DEAD-like helicases superfamily
X966_RS04230	SM00490	helicase superfamily c-terminal domain
X966_RS04420	SM00434	DNA Topoisomerase IV
