locus-tag	class	description
OCUBac02_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
OCUBac02_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
OCUBac02_RS00030	COG0514	ATP-dependent DNA helicase (RecQ)
OCUBac02_RS00060	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
OCUBac02_RS00100	COG2205	protein histidine kinase activity
OCUBac02_RS00105	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS00140	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
OCUBac02_RS00140	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
OCUBac02_RS00150	COG0785	Cytochrome C biogenesis protein
OCUBac02_RS00155	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
OCUBac02_RS00165	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
OCUBac02_RS00170	COG1999	signal sequence binding
OCUBac02_RS00185	COG1914	H( )-stimulated, divalent metal cation uptake system
OCUBac02_RS00230	COG3034	peptidoglycan biosynthetic process
OCUBac02_RS00240	COG0583	DNA-binding transcription factor activity
OCUBac02_RS00245	COG0626	cystathionine gamma-synthase activity
OCUBac02_RS00250	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCUBac02_RS00255	COG4597	amino acid ABC transporter
OCUBac02_RS00260	COG0765	amino acid transport
OCUBac02_RS00265	COG1126	abc transporter atp-binding protein
OCUBac02_RS00295	COG1393	Belongs to the ArsC family
OCUBac02_RS00300	COG0798	PFAM Bile acid sodium symporter
OCUBac02_RS00335	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
OCUBac02_RS00375	COG2161	toxin-antitoxin pair type II binding
OCUBac02_RS00390	COG1804	L-carnitine dehydratase bile acid-inducible protein F
OCUBac02_RS00405	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCUBac02_RS00420	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
OCUBac02_RS00425	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS00435	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
OCUBac02_RS00440	COG0488	(ABC) transporter
OCUBac02_RS00445	COG2066	Belongs to the glutaminase family
OCUBac02_RS00460	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
OCUBac02_RS00465	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
OCUBac02_RS00490	COG0784	Response regulator, receiver
OCUBac02_RS00530	COG0628	permease
OCUBac02_RS00535	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
OCUBac02_RS00535	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
OCUBac02_RS00550	COG0667	Aldo Keto reductase
OCUBac02_RS00565	COG0135	phosphoribosylanthranilate isomerase activity
OCUBac02_RS00570	COG0133	tryptophan synthase activity
OCUBac02_RS00580	COG1999	signal sequence binding
OCUBac02_RS00590	COG0402	S-adenosylhomocysteine deaminase activity
OCUBac02_RS00600	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS00605	COG0601	transmembrane transport
OCUBac02_RS00615	COG1917	Cupin 2, conserved barrel domain protein
OCUBac02_RS00615	COG1396	sequence-specific DNA binding
OCUBac02_RS00625	COG4774	siderophore transport
OCUBac02_RS00640	COG2375	cellular response to nickel ion
OCUBac02_RS00645	COG4106	trans-aconitate 2-methyltransferase activity
OCUBac02_RS00650	COG2226	methyltransferase
OCUBac02_RS00655	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
OCUBac02_RS00660	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
OCUBac02_RS00675	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS00685	COG3237	CsbD-like
OCUBac02_RS00715	COG0635	Involved in the biosynthesis of porphyrin-containing compound
OCUBac02_RS00720	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
OCUBac02_RS00725	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
OCUBac02_RS00730	COG1420	regulation of RNA biosynthetic process
OCUBac02_RS00735	COG3842	ATPase activity
OCUBac02_RS00740	COG0395	ABC-type sugar transport system, permease component
OCUBac02_RS00750	COG1175	transmembrane transport
OCUBac02_RS00785	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
OCUBac02_RS00790	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
OCUBac02_RS00830	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
OCUBac02_RS00840	COG0189	ligase activity
OCUBac02_RS00845	COG0792	nuclease activity
OCUBac02_RS00850	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
OCUBac02_RS00865	COG4232	protein-disulfide reductase activity
OCUBac02_RS00870	COG1522	sequence-specific DNA binding
OCUBac02_RS00880	COG0756	dUTP diphosphatase activity
OCUBac02_RS00885	COG1959	2 iron, 2 sulfur cluster binding
OCUBac02_RS00900	COG2514	catechol 2,3-dioxygenase activity
OCUBac02_RS00910	COG1295	ribonuclease BN
OCUBac02_RS00920	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
OCUBac02_RS00925	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
OCUBac02_RS00930	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
OCUBac02_RS00940	COG0230	Belongs to the bacterial ribosomal protein bL34 family
OCUBac02_RS00945	COG0594	ribonuclease P activity
OCUBac02_RS00950	COG0706	membrane insertase activity
OCUBac02_RS00955	COG0110	maltose O-acetyltransferase activity
OCUBac02_RS00960	COG0218	Necessary for normal cell division and for the maintenance of normal septation
OCUBac02_RS00970	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
OCUBac02_RS00985	COG0131	Imidazoleglycerol-phosphate dehydratase
OCUBac02_RS00995	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
OCUBac02_RS01000	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
OCUBac02_RS01005	COG0107	imidazoleglycerol-phosphate synthase activity
OCUBac02_RS01010	COG0140	phosphoribosyl-ATP diphosphatase activity
OCUBac02_RS01015	COG1072	(Pantothenic acid kinase))
OCUBac02_RS01020	COG1238	metal cluster binding
OCUBac02_RS01025	COG0251	oxidation-reduction process
OCUBac02_RS01040	COG1492	cobalamin metabolic process
OCUBac02_RS01060	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
OCUBac02_RS01105	COG3311	Transcriptional regulator
OCUBac02_RS01190	COG0717	Belongs to the dCTP deaminase family
OCUBac02_RS01195	COG2967	ApaG domain
OCUBac02_RS01210	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
OCUBac02_RS01215	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
OCUBac02_RS01225	COG0765	amino acid transport
OCUBac02_RS01230	COG4597	amino acid ABC transporter
OCUBac02_RS01235	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCUBac02_RS01240	COG0516	GMP reductase activity
OCUBac02_RS01245	COG0697	spore germination
OCUBac02_RS01250	COG3180	Ammonia monooxygenase
OCUBac02_RS01290	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS01300	COG0156	8-amino-7-oxononanoate synthase activity
OCUBac02_RS01310	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
OCUBac02_RS01315	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
OCUBac02_RS01320	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
OCUBac02_RS01320	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
OCUBac02_RS01335	COG0779	Required for maturation of 30S ribosomal subunits
OCUBac02_RS01345	COG0220	tRNA (guanine-N7-)-methyltransferase activity
OCUBac02_RS01350	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
OCUBac02_RS01355	COG1396	sequence-specific DNA binding
OCUBac02_RS01360	COG0815	Transfers the fatty acyl group on membrane lipoproteins
OCUBac02_RS01365	COG1253	flavin adenine dinucleotide binding
OCUBac02_RS01370	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
OCUBac02_RS01375	COG1702	phosphate starvation-inducible protein PhoH
OCUBac02_RS01380	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
OCUBac02_RS01390	COG0456	acetyltransferase
OCUBac02_RS01390	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
OCUBac02_RS01395	COG1214	PFAM Peptidase M22, glycoprotease
OCUBac02_RS01400	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
OCUBac02_RS01410	COG0180	Tryptophanyl-tRNA synthetase
OCUBac02_RS01415	COG0728	peptidoglycan biosynthetic process
OCUBac02_RS01425	COG3609	addiction module antidote protein, CC2985 family
OCUBac02_RS01430	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
OCUBac02_RS01440	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
OCUBac02_RS01445	COG0840	transmembrane signaling receptor activity
OCUBac02_RS01460	COG1733	regulation of RNA biosynthetic process
OCUBac02_RS01465	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
OCUBac02_RS01470	COG1185	polyribonucleotide nucleotidyltransferase activity
OCUBac02_RS01480	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCUBac02_RS01505	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
OCUBac02_RS01510	COG1253	flavin adenine dinucleotide binding
OCUBac02_RS01520	COG0237	dephospho-CoA kinase activity
OCUBac02_RS01525	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
OCUBac02_RS01530	COG0424	maF-like protein
OCUBac02_RS01535	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
OCUBac02_RS01540	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
OCUBac02_RS01550	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
OCUBac02_RS01555	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
OCUBac02_RS01560	COG0445	tRNA wobble uridine modification
OCUBac02_RS01565	COG0357	Ribosomal RNA small subunit methyltransferase G
OCUBac02_RS01590	COG0495	leucyl-tRNA aminoacylation
OCUBac02_RS01610	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS01640	COG0004	ammonium transporteR
OCUBac02_RS01645	COG0347	Belongs to the P(II) protein family
OCUBac02_RS01650	COG1946	Acyl-CoA thioesterase
OCUBac02_RS01655	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
OCUBac02_RS01660	COG2835	tetraacyldisaccharide 4'-kinase activity
OCUBac02_RS01665	COG2902	Dehydrogenase
OCUBac02_RS01670	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
OCUBac02_RS01685	COG0670	Belongs to the BI1 family
OCUBac02_RS01695	COG4181	ATPase activity
OCUBac02_RS01705	COG0667	Aldo Keto reductase
OCUBac02_RS01715	COG2154	pterin-4-alpha-carbinolamine dehydratase
OCUBac02_RS01720	COG0564	pseudouridine synthase activity
OCUBac02_RS01725	COG0552	protein localization to endoplasmic reticulum
OCUBac02_RS01730	COG2917	probably involved in intracellular septation
OCUBac02_RS01735	COG5642	Protein of unknown function (DUF2384)
OCUBac02_RS01765	COG0820	rRNA (adenine-C2-)-methyltransferase activity
OCUBac02_RS01775	COG0405	Gamma-glutamyltransferase
OCUBac02_RS01780	COG1704	LemA family
OCUBac02_RS01785	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
OCUBac02_RS01800	COG1560	Kdo2-lipid A biosynthetic process
OCUBac02_RS01805	COG0604	alcohol dehydrogenase
OCUBac02_RS01805	COG3321	synthase
OCUBac02_RS01815	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
OCUBac02_RS01820	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS01825	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
OCUBac02_RS01830	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
OCUBac02_RS01835	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
OCUBac02_RS01840	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
OCUBac02_RS01845	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
OCUBac02_RS01850	COG4133	protoheme IX ABC transporter activity
OCUBac02_RS01855	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
OCUBac02_RS01870	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
OCUBac02_RS01880	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
OCUBac02_RS01885	COG0047	phosphoribosylformylglycinamidine synthase activity
OCUBac02_RS01890	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
OCUBac02_RS01900	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
OCUBac02_RS01920	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
OCUBac02_RS01930	COG0739	heme binding
OCUBac02_RS01970	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
OCUBac02_RS01985	COG0138	bifunctional purine biosynthesis protein purh
OCUBac02_RS02000	COG0501	Belongs to the peptidase M48B family
OCUBac02_RS02010	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
OCUBac02_RS02020	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
OCUBac02_RS02025	COG1376	ErfK ybiS ycfS ynhG family protein
OCUBac02_RS02030	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
OCUBac02_RS02035	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
OCUBac02_RS02040	COG4558	Periplasmic binding protein
OCUBac02_RS02065	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
OCUBac02_RS02070	COG2301	Belongs to the HpcH HpaI aldolase family
OCUBac02_RS02080	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
OCUBac02_RS02085	COG2030	dehydratase
OCUBac02_RS02095	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
OCUBac02_RS02100	COG1053	succinate dehydrogenase
OCUBac02_RS02115	COG0518	GMP synthase (glutamine-hydrolyzing) activity
OCUBac02_RS02115	COG0519	Catalyzes the synthesis of GMP from XMP
OCUBac02_RS02120	COG1309	transcriptional regulator
OCUBac02_RS02165	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
OCUBac02_RS02175	COG1132	(ABC) transporter
OCUBac02_RS02185	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
OCUBac02_RS02190	COG3842	ATPase activity
OCUBac02_RS02195	COG1178	ABC-type Fe3 transport system permease component
OCUBac02_RS02205	COG0508	dehydrogenase complex catalyzes the overall conversion of
OCUBac02_RS02210	COG0022	dehydrogenase e1 component
OCUBac02_RS02215	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
OCUBac02_RS02225	COG2390	Transcriptional regulator
OCUBac02_RS02240	COG1957	nucleoside hydrolase
OCUBac02_RS02255	COG1172	Belongs to the binding-protein-dependent transport system permease family
OCUBac02_RS02260	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
OCUBac02_RS02300	COG4172	Belongs to the ABC transporter superfamily
OCUBac02_RS02345	COG2309	aminopeptidase activity
OCUBac02_RS02360	COG1414	Transcriptional regulator
OCUBac02_RS02375	COG4126	flavin adenine dinucleotide binding
OCUBac02_RS02385	COG3034	peptidoglycan biosynthetic process
OCUBac02_RS02390	COG0825	malonyl-CoA metabolic process
OCUBac02_RS02400	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
OCUBac02_RS02425	COG1196	nuclear chromosome segregation
OCUBac02_RS02425	COG3264	Mechanosensitive ion channel
OCUBac02_RS02435	COG5295	Hep Hag repeat protein
OCUBac02_RS02440	COG3214	Protein conserved in bacteria
OCUBac02_RS02450	COG0494	nUDIX hydrolase
OCUBac02_RS02460	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
OCUBac02_RS02465	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
OCUBac02_RS02470	COG0653	protein targeting
OCUBac02_RS02480	COG0330	HflC and HflK could
OCUBac02_RS02485	COG1585	Membrane protein implicated in regulation of membrane protease activity
OCUBac02_RS02490	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
OCUBac02_RS02500	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
OCUBac02_RS02515	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
OCUBac02_RS02530	COG5310	Homospermidine synthase
OCUBac02_RS02545	COG3118	belongs to the thioredoxin family
OCUBac02_RS02575	COG4251	negative regulation of phosphorylation
OCUBac02_RS02585	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS02590	COG2198	Histidine kinase
OCUBac02_RS02590	COG0784	Response regulator, receiver
OCUBac02_RS02590	COG5002	protein histidine kinase activity
OCUBac02_RS02635	COG1902	pentaerythritol trinitrate reductase activity
OCUBac02_RS02635	COG0446	pyridine nucleotide-disulphide oxidoreductase
OCUBac02_RS02640	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
OCUBac02_RS02650	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS02655	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
OCUBac02_RS02685	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
OCUBac02_RS02690	COG1053	succinate dehydrogenase
OCUBac02_RS02700	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
OCUBac02_RS02715	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
OCUBac02_RS02720	COG0737	Belongs to the 5'-nucleotidase family
OCUBac02_RS02725	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
OCUBac02_RS02760	COG1022	Amp-dependent synthetase and ligase
OCUBac02_RS02820	COG0154	amidase activity
OCUBac02_RS02845	COG2358	TRAP transporter, solute receptor (TAXI family
OCUBac02_RS02850	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
OCUBac02_RS02860	COG1121	(ABC) transporter
OCUBac02_RS02890	COG1132	(ABC) transporter
OCUBac02_RS02895	COG0387	Pfam Sodium calcium exchanger
OCUBac02_RS02905	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
OCUBac02_RS02910	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
OCUBac02_RS02920	COG4974	Belongs to the 'phage' integrase family
OCUBac02_RS02925	COG0288	reversible hydration of carbon dioxide
OCUBac02_RS02935	COG0747	negative chemotaxis
OCUBac02_RS02965	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
OCUBac02_RS02990	COG0747	negative chemotaxis
OCUBac02_RS02995	COG0601	transmembrane transport
OCUBac02_RS03020	COG1176	ABC-type spermidine putrescine transport system, permease component I
OCUBac02_RS03025	COG1177	transmembrane transport
OCUBac02_RS03030	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
OCUBac02_RS03040	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
OCUBac02_RS03065	COG0683	leucine binding
OCUBac02_RS03080	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
OCUBac02_RS03085	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
OCUBac02_RS03120	COG3639	organic phosphonate transmembrane transporter activity
OCUBac02_RS03125	COG3639	organic phosphonate transmembrane transporter activity
OCUBac02_RS03140	COG0635	Involved in the biosynthesis of porphyrin-containing compound
OCUBac02_RS03145	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS03155	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCUBac02_RS03175	COG1177	transmembrane transport
OCUBac02_RS03180	COG1176	ABC-type spermidine putrescine transport system, permease component I
OCUBac02_RS03185	COG3842	ATPase activity
OCUBac02_RS03205	COG1846	Transcriptional regulator
OCUBac02_RS03225	COG0438	transferase activity, transferring glycosyl groups
OCUBac02_RS03225	COG1216	Glycosyl transferase, family 2
OCUBac02_RS03230	COG2226	methyltransferase
OCUBac02_RS03285	COG3842	ATPase activity
OCUBac02_RS03305	COG0318	PFAM AMP-dependent synthetase and ligase
OCUBac02_RS03310	COG1024	Enoyl-CoA hydratase
OCUBac02_RS03320	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
OCUBac02_RS03325	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
OCUBac02_RS03330	COG1845	cytochrome c oxidase, subunit III
OCUBac02_RS03335	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
OCUBac02_RS03345	COG3938	Belongs to the proline racemase family
OCUBac02_RS03350	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCUBac02_RS03355	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
OCUBac02_RS03385	COG0515	serine threonine protein kinase
OCUBac02_RS03385	COG1262	PFAM Formylglycine-generating sulfatase enzyme
OCUBac02_RS03390	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS03395	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
OCUBac02_RS03400	COG0247	lactate metabolic process
OCUBac02_RS03400	COG0277	FAD linked oxidase domain protein
OCUBac02_RS03405	COG0402	S-adenosylhomocysteine deaminase activity
OCUBac02_RS03410	COG0583	DNA-binding transcription factor activity
OCUBac02_RS03435	COG2080	2 iron, 2 sulfur cluster binding
OCUBac02_RS03440	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
OCUBac02_RS03445	COG1529	Aldehyde oxidase and xanthine dehydrogenase
OCUBac02_RS03450	COG4974	Belongs to the 'phage' integrase family
OCUBac02_RS03455	COG0517	IMP dehydrogenase activity
OCUBac02_RS03465	COG0765	amino acid transport
OCUBac02_RS03475	COG1126	abc transporter atp-binding protein
OCUBac02_RS03480	COG4948	Mandelate Racemase Muconate Lactonizing
OCUBac02_RS03490	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
OCUBac02_RS03500	COG4533	DNA binding
OCUBac02_RS03510	COG0402	S-adenosylhomocysteine deaminase activity
OCUBac02_RS03530	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
OCUBac02_RS03540	COG0747	negative chemotaxis
OCUBac02_RS03545	COG0601	transmembrane transport
OCUBac02_RS03560	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
OCUBac02_RS03575	COG1121	(ABC) transporter
OCUBac02_RS03580	COG1108	ABC-type Mn2 Zn2 transport systems permease components
OCUBac02_RS03585	COG1108	ABC-type Mn2 Zn2 transport systems permease components
OCUBac02_RS03590	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
OCUBac02_RS03595	COG1760	l-serine dehydratase
OCUBac02_RS03605	COG1473	amidohydrolase
OCUBac02_RS03620	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS03675	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCUBac02_RS03680	COG0583	DNA-binding transcription factor activity
OCUBac02_RS03735	COG0257	Belongs to the bacterial ribosomal protein bL36 family
OCUBac02_RS03745	COG0469	pyruvate kinase activity
OCUBac02_RS03760	COG3750	Belongs to the UPF0335 family
OCUBac02_RS03775	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
OCUBac02_RS03805	COG2204	response regulator
OCUBac02_RS03870	COG1793	dna ligase
OCUBac02_RS04080	COG1401	restriction endodeoxyribonuclease activity
OCUBac02_RS04080	COG1401	restriction endodeoxyribonuclease activity
OCUBac02_RS04130	COG0494	nUDIX hydrolase
OCUBac02_RS04140	COG0793	Belongs to the peptidase S41A family
OCUBac02_RS04145	COG1388	LysM domain
OCUBac02_RS04145	COG4942	peptidase
OCUBac02_RS04150	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
OCUBac02_RS04155	COG0799	negative regulation of ribosome biogenesis
OCUBac02_RS04160	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
OCUBac02_RS04165	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
OCUBac02_RS04170	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
OCUBac02_RS04200	COG2264	protein methyltransferase activity
OCUBac02_RS04205	COG0840	transmembrane signaling receptor activity
OCUBac02_RS04215	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
OCUBac02_RS04220	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
OCUBac02_RS04225	COG3454	Phosphonate metabolism
OCUBac02_RS04230	COG4778	phosphonate C-P lyase system protein PhnL
OCUBac02_RS04235	COG4107	phosphonate C-P lyase system protein PhnK
OCUBac02_RS04240	COG3627	carbon phosphorus lyase activity
OCUBac02_RS04245	COG3626	phosphonate metabolism
OCUBac02_RS04250	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
OCUBac02_RS04255	COG3624	Phosphonate C-P lyase system protein PhnG
OCUBac02_RS04260	COG2188	Transcriptional regulator
OCUBac02_RS04270	COG3639	organic phosphonate transmembrane transporter activity
OCUBac02_RS04280	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
OCUBac02_RS04290	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
OCUBac02_RS04295	COG4953	penicillin-binding protein 1C
OCUBac02_RS04325	COG1024	Enoyl-CoA hydratase
OCUBac02_RS04330	COG1250	3-hydroxyacyl-CoA dehydrogenase
OCUBac02_RS04330	COG1024	Enoyl-CoA hydratase
OCUBac02_RS04335	COG2354	Protein conserved in bacteria
OCUBac02_RS04345	COG0277	FAD linked oxidase domain protein
OCUBac02_RS04350	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
OCUBac02_RS04355	COG1473	amidohydrolase
OCUBac02_RS04365	COG0246	Mannitol dehydrogenase
OCUBac02_RS04375	COG0747	negative chemotaxis
OCUBac02_RS04390	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
OCUBac02_RS04400	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
OCUBac02_RS04405	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
OCUBac02_RS04410	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
OCUBac02_RS04415	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
OCUBac02_RS04420	COG0355	proton-transporting ATP synthase activity, rotational mechanism
OCUBac02_RS04435	COG0640	Transcriptional regulator
OCUBac02_RS04440	COG1902	pentaerythritol trinitrate reductase activity
OCUBac02_RS04445	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
OCUBac02_RS04450	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
OCUBac02_RS04460	COG0523	cobalamin synthesis protein
OCUBac02_RS04470	COG1686	Belongs to the peptidase S11 family
OCUBac02_RS04480	COG0183	Belongs to the thiolase family
OCUBac02_RS04490	COG0271	Belongs to the BolA IbaG family
OCUBac02_RS04500	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
OCUBac02_RS04500	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
OCUBac02_RS04515	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
OCUBac02_RS04520	COG1040	competence protein
OCUBac02_RS04545	COG0629	single-stranded DNA binding
OCUBac02_RS04565	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
OCUBac02_RS04695	COG0740	serine-type endopeptidase activity
OCUBac02_RS04885	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
OCUBac02_RS04915	COG3685	Protein conserved in bacteria
OCUBac02_RS04920	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
OCUBac02_RS04930	COG1640	4-alpha-glucanotransferase
OCUBac02_RS04945	COG0297	glycogen (starch) synthase activity
OCUBac02_RS04955	COG1523	belongs to the glycosyl hydrolase 13 family
OCUBac02_RS04960	COG0058	SHG alpha-glucan phosphorylase activity
OCUBac02_RS04985	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
OCUBac02_RS05025	COG1653	transport
OCUBac02_RS05035	COG0395	ABC-type sugar transport system, permease component
OCUBac02_RS05040	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
OCUBac02_RS05055	COG2971	BadF BadG BcrA BcrD
OCUBac02_RS05060	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
OCUBac02_RS05070	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS05080	COG0747	negative chemotaxis
OCUBac02_RS05085	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
OCUBac02_RS05095	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
OCUBac02_RS05100	COG2188	Transcriptional regulator
OCUBac02_RS05105	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
OCUBac02_RS05110	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
OCUBac02_RS05140	COG2824	Alkylphosphonate utilization operon protein PhnA
OCUBac02_RS05150	COG0154	amidase activity
OCUBac02_RS05170	COG1473	amidohydrolase
OCUBac02_RS05180	COG0601	transmembrane transport
OCUBac02_RS05190	COG0444	Belongs to the ABC transporter superfamily
OCUBac02_RS05195	COG4608	Belongs to the ABC transporter superfamily
OCUBac02_RS05205	COG0583	DNA-binding transcription factor activity
OCUBac02_RS05210	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
OCUBac02_RS05215	COG0165	Argininosuccinate lyase
OCUBac02_RS05230	COG2423	ornithine cyclodeaminase activity
OCUBac02_RS05245	COG1473	amidohydrolase
OCUBac02_RS05265	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
OCUBac02_RS05290	COG0735	belongs to the Fur family
OCUBac02_RS05305	COG1278	Cold shock
OCUBac02_RS05320	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
OCUBac02_RS05340	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
OCUBac02_RS05345	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
OCUBac02_RS05360	COG0564	pseudouridine synthase activity
OCUBac02_RS05365	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
OCUBac02_RS05400	COG2884	Cell division ATP-binding protein ftsE
OCUBac02_RS05415	COG2204	response regulator
OCUBac02_RS05420	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
OCUBac02_RS05425	COG3179	chitinase
OCUBac02_RS05435	COG1522	sequence-specific DNA binding
OCUBac02_RS05440	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
OCUBac02_RS05445	COG0842	Transport permease protein
OCUBac02_RS05450	COG1131	(ABC) transporter
OCUBac02_RS05465	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
OCUBac02_RS05480	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
OCUBac02_RS05490	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
OCUBac02_RS05490	COG0546	phosphoglycolate phosphatase activity
OCUBac02_RS05500	COG1522	sequence-specific DNA binding
OCUBac02_RS05515	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
OCUBac02_RS05520	COG2186	Transcriptional regulator
OCUBac02_RS05525	COG3842	ATPase activity
OCUBac02_RS05535	COG1175	transmembrane transport
OCUBac02_RS05540	COG0395	ABC-type sugar transport system, permease component
OCUBac02_RS05545	COG2084	Dehydrogenase
OCUBac02_RS05550	COG1609	Transcriptional regulator
OCUBac02_RS05555	COG2084	Dehydrogenase
OCUBac02_RS05565	COG1804	L-carnitine dehydratase bile acid-inducible protein F
OCUBac02_RS05575	COG1228	amidohydrolase
OCUBac02_RS05580	COG1177	transmembrane transport
OCUBac02_RS05585	COG3842	ATPase activity
OCUBac02_RS05595	COG1176	ABC-type spermidine putrescine transport system, permease component I
OCUBac02_RS05605	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCUBac02_RS05625	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS05630	COG2205	protein histidine kinase activity
OCUBac02_RS05635	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
OCUBac02_RS05640	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
OCUBac02_RS05650	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
OCUBac02_RS05680	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
OCUBac02_RS05705	COG1595	DNA-templated transcription, initiation
OCUBac02_RS05720	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
OCUBac02_RS05735	COG1473	amidohydrolase
OCUBac02_RS05770	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
OCUBac02_RS05780	COG1250	3-hydroxyacyl-CoA dehydrogenase
OCUBac02_RS05785	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
OCUBac02_RS05790	COG2086	electron transfer activity
OCUBac02_RS05825	COG0438	transferase activity, transferring glycosyl groups
OCUBac02_RS05830	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS05835	COG0601	transmembrane transport
OCUBac02_RS05840	COG0747	negative chemotaxis
OCUBac02_RS05855	COG1132	(ABC) transporter
OCUBac02_RS05905	COG0227	Belongs to the bacterial ribosomal protein bL28 family
OCUBac02_RS05925	COG0129	dihydroxy-acid dehydratase activity
OCUBac02_RS05945	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS05950	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
OCUBac02_RS05955	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
OCUBac02_RS05970	COG0211	Belongs to the bacterial ribosomal protein bL27 family
OCUBac02_RS06055	COG0583	DNA-binding transcription factor activity
OCUBac02_RS06060	COG0577	efflux transmembrane transporter activity
OCUBac02_RS06060	COG1136	(ABC) transporter
OCUBac02_RS06065	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCUBac02_RS06080	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
OCUBac02_RS06115	COG1917	Cupin 2, conserved barrel domain protein
OCUBac02_RS06120	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
OCUBac02_RS06125	COG0583	DNA-binding transcription factor activity
OCUBac02_RS06145	COG0483	inositol monophosphate 1-phosphatase activity
OCUBac02_RS06150	COG2267	carboxylic ester hydrolase activity
OCUBac02_RS06155	COG0071	Belongs to the small heat shock protein (HSP20) family
OCUBac02_RS06170	COG0069	glutamate synthase activity
OCUBac02_RS06170	COG0067	glutamate synthase
OCUBac02_RS06170	COG0070	glutamate synthase
OCUBac02_RS06195	COG2951	lytic endotransglycosylase activity
OCUBac02_RS06200	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
OCUBac02_RS06210	COG1210	Utp--glucose-1-phosphate uridylyltransferase
OCUBac02_RS06215	COG2226	methyltransferase
OCUBac02_RS06220	COG0824	Thioesterase
OCUBac02_RS06225	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
OCUBac02_RS06245	COG3813	Protein conserved in bacteria
OCUBac02_RS06250	COG2192	nodulation
OCUBac02_RS06255	COG0668	transmembrane transport
OCUBac02_RS06260	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
OCUBac02_RS06265	COG0165	Argininosuccinate lyase
OCUBac02_RS06275	COG0019	diaminopimelate decarboxylase activity
OCUBac02_RS06290	COG2223	nitrite transmembrane transporter activity
OCUBac02_RS06305	COG0183	Belongs to the thiolase family
OCUBac02_RS06310	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
OCUBac02_RS06325	COG5001	Diguanylate cyclase
OCUBac02_RS06325	COG5002	protein histidine kinase activity
OCUBac02_RS06335	COG0333	Belongs to the bacterial ribosomal protein bL32 family
OCUBac02_RS06345	COG0142	geranyltranstransferase activity
OCUBac02_RS06360	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
OCUBac02_RS06365	COG1473	amidohydrolase
OCUBac02_RS06380	COG2076	Multidrug Resistance protein
OCUBac02_RS06410	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
OCUBac02_RS06415	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
OCUBac02_RS06450	COG1653	transport
OCUBac02_RS06460	COG3833	ABC-type maltose transport systems, permease component
OCUBac02_RS06465	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
OCUBac02_RS06475	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCUBac02_RS06485	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
OCUBac02_RS06490	COG2326	polyphosphate kinase activity
OCUBac02_RS06495	COG5002	protein histidine kinase activity
OCUBac02_RS06500	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
OCUBac02_RS06510	COG0581	inorganic phosphate transmembrane transporter activity
OCUBac02_RS06515	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
OCUBac02_RS06520	COG0704	Plays a role in the regulation of phosphate uptake
OCUBac02_RS06525	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS06535	COG1126	abc transporter atp-binding protein
OCUBac02_RS06540	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
OCUBac02_RS06545	COG1309	transcriptional regulator
OCUBac02_RS06550	COG0039	L-malate dehydrogenase activity
OCUBac02_RS06555	COG0045	succinate-CoA ligase (ADP-forming) activity
OCUBac02_RS06560	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
OCUBac02_RS06565	COG0567	Dehydrogenase, E1 component
OCUBac02_RS06570	COG0508	dehydrogenase complex catalyzes the overall conversion of
OCUBac02_RS06575	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS06580	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
OCUBac02_RS06590	COG0402	S-adenosylhomocysteine deaminase activity
OCUBac02_RS06600	COG2249	NAD(P)H dehydrogenase (quinone) activity
OCUBac02_RS06615	COG3158	transport of potassium into the cell
OCUBac02_RS06620	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
OCUBac02_RS06625	COG0735	belongs to the Fur family
OCUBac02_RS06630	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS06645	COG4651	solute:proton antiporter activity
OCUBac02_RS06645	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
OCUBac02_RS06675	COG3718	enzyme involved in inositol metabolism
OCUBac02_RS06685	COG3962	Belongs to the TPP enzyme family
OCUBac02_RS06690	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCUBac02_RS06700	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS06705	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCUBac02_RS06730	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
OCUBac02_RS06750	COG2195	Cleaves the N-terminal amino acid of tripeptides
OCUBac02_RS06755	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
OCUBac02_RS06780	COG0828	Belongs to the bacterial ribosomal protein bS21 family
OCUBac02_RS06785	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
OCUBac02_RS06820	COG0318	PFAM AMP-dependent synthetase and ligase
OCUBac02_RS06840	COG3321	synthase
OCUBac02_RS06840	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS06840	COG0604	alcohol dehydrogenase
OCUBac02_RS06855	COG0254	rRNA binding
OCUBac02_RS06860	COG1132	(ABC) transporter
OCUBac02_RS06880	COG0483	inositol monophosphate 1-phosphatase activity
OCUBac02_RS06890	COG0352	thiamine-phosphate diphosphorylase activity
OCUBac02_RS06895	COG3135	benzoate transporter
OCUBac02_RS06910	COG0126	phosphoglycerate kinase activity
OCUBac02_RS06945	COG2885	chlorophyll binding
OCUBac02_RS06950	COG0235	Class ii aldolase
OCUBac02_RS06965	COG0848	biopolymer transport protein
OCUBac02_RS06985	COG1309	transcriptional regulator
OCUBac02_RS06990	COG0824	Thioesterase
OCUBac02_RS07005	COG2255	four-way junction helicase activity
OCUBac02_RS07010	COG0456	acetyltransferase
OCUBac02_RS07015	COG0632	four-way junction helicase activity
OCUBac02_RS07020	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
OCUBac02_RS07030	COG0217	transcriptional regulatory protein
OCUBac02_RS07035	COG0840	transmembrane signaling receptor activity
OCUBac02_RS07040	COG1692	metallophosphoesterase
OCUBac02_RS07060	COG0037	tRNA processing
OCUBac02_RS07065	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
OCUBac02_RS07070	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
OCUBac02_RS07075	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS07080	COG1063	alcohol dehydrogenase
OCUBac02_RS07085	COG3706	GGDEF domain
OCUBac02_RS07090	COG2759	Belongs to the formate--tetrahydrofolate ligase family
OCUBac02_RS07095	COG0625	glutathione transferase activity
OCUBac02_RS07105	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
OCUBac02_RS07120	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
OCUBac02_RS07125	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
OCUBac02_RS07150	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
OCUBac02_RS07160	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
OCUBac02_RS07165	COG2818	Glycosylase
OCUBac02_RS07170	COG0354	folic acid binding
OCUBac02_RS07175	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
OCUBac02_RS07180	COG3795	YCII-related domain
OCUBac02_RS07185	COG3795	YCII-related domain
OCUBac02_RS07190	COG4941	Belongs to the sigma-70 factor family
OCUBac02_RS07200	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
OCUBac02_RS07225	COG0583	DNA-binding transcription factor activity
OCUBac02_RS07230	COG1335	isochorismatase
OCUBac02_RS07260	COG1522	sequence-specific DNA binding
OCUBac02_RS07265	COG0579	oxidoreductase
OCUBac02_RS07280	COG4172	Belongs to the ABC transporter superfamily
OCUBac02_RS07285	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS07315	COG0436	Aminotransferase
OCUBac02_RS07325	COG1126	abc transporter atp-binding protein
OCUBac02_RS07330	COG0765	amino acid transport
OCUBac02_RS07335	COG0765	amino acid transport
OCUBac02_RS07355	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
OCUBac02_RS07375	COG2925	Exonuclease
OCUBac02_RS07400	COG2801	Transposase and inactivated derivatives
OCUBac02_RS07435	COG0058	SHG alpha-glucan phosphorylase activity
OCUBac02_RS07455	COG3920	Histidine kinase
OCUBac02_RS07515	COG0477	Major facilitator Superfamily
OCUBac02_RS07530	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
OCUBac02_RS07585	COG0326	Molecular chaperone. Has ATPase activity
OCUBac02_RS07595	COG0459	protein refolding
OCUBac02_RS07600	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
OCUBac02_RS07605	COG5425	PFAM Usg family protein
OCUBac02_RS07700	COG0025	NhaP-type Na H and K H
OCUBac02_RS07710	COG1529	Aldehyde oxidase and xanthine dehydrogenase
OCUBac02_RS07715	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
OCUBac02_RS07720	COG2080	2 iron, 2 sulfur cluster binding
OCUBac02_RS07735	COG0667	Aldo Keto reductase
OCUBac02_RS07750	COG4974	Belongs to the 'phage' integrase family
OCUBac02_RS07755	COG0517	IMP dehydrogenase activity
OCUBac02_RS07760	COG1278	Cold shock
OCUBac02_RS07775	COG0784	Response regulator, receiver
OCUBac02_RS07775	COG4191	Histidine kinase
OCUBac02_RS07780	COG3237	CsbD-like
OCUBac02_RS07790	COG2204	response regulator
OCUBac02_RS07800	COG3920	Histidine kinase
OCUBac02_RS07800	COG2202	Pas domain
OCUBac02_RS07810	COG2925	Exonuclease
OCUBac02_RS07835	COG1396	sequence-specific DNA binding
OCUBac02_RS07855	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
OCUBac02_RS07880	COG0482	sulfurtransferase activity
OCUBac02_RS07890	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
OCUBac02_RS07900	COG1766	The M ring may be actively involved in energy transduction
OCUBac02_RS07905	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
OCUBac02_RS07915	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
OCUBac02_RS07920	COG2204	response regulator
OCUBac02_RS07930	COG2271	Major facilitator Superfamily
OCUBac02_RS07940	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
OCUBac02_RS07945	COG0697	spore germination
OCUBac02_RS07950	COG0392	lysyltransferase activity
OCUBac02_RS07980	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS07985	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
OCUBac02_RS07990	COG2201	protein-glutamate methylesterase activity
OCUBac02_RS07995	COG2201	protein-glutamate methylesterase activity
OCUBac02_RS08005	COG0643	Histidine kinase
OCUBac02_RS08005	COG2198	Histidine kinase
OCUBac02_RS08050	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
OCUBac02_RS08065	COG0438	transferase activity, transferring glycosyl groups
OCUBac02_RS08080	COG2943	transferase activity, transferring hexosyl groups
OCUBac02_RS08100	COG3622	Belongs to the hyi family
OCUBac02_RS08105	COG0837	glucose binding
OCUBac02_RS08110	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
OCUBac02_RS08135	COG0494	nUDIX hydrolase
OCUBac02_RS08140	COG0165	Argininosuccinate lyase
OCUBac02_RS08145	COG0456	acetyltransferase
OCUBac02_RS08170	COG0714	Associated with various cellular activities
OCUBac02_RS08190	COG0617	tRNA 3'-terminal CCA addition
OCUBac02_RS08195	COG0408	coproporphyrinogen oxidase activity
OCUBac02_RS08200	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
OCUBac02_RS08210	COG1132	(ABC) transporter
OCUBac02_RS08215	COG0723	plastoquinol--plastocyanin reductase activity
OCUBac02_RS08220	COG2857	Cytochrome c1
OCUBac02_RS08220	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
OCUBac02_RS08225	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
OCUBac02_RS08225	COG2857	Cytochrome c1
OCUBac02_RS08230	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
OCUBac02_RS08235	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
OCUBac02_RS08245	COG0235	Class ii aldolase
OCUBac02_RS08260	COG0012	GTP binding
OCUBac02_RS08270	COG0193	aminoacyl-tRNA hydrolase activity
OCUBac02_RS08275	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
OCUBac02_RS08280	COG5001	Diguanylate cyclase
OCUBac02_RS08280	COG3300	MHYT domain
OCUBac02_RS08290	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
OCUBac02_RS08295	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
OCUBac02_RS08305	COG0006	proline dipeptidase activity
OCUBac02_RS08335	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
OCUBac02_RS08345	COG0625	glutathione transferase activity
OCUBac02_RS08355	COG2205	protein histidine kinase activity
OCUBac02_RS08360	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS08365	COG1846	Transcriptional regulator
OCUBac02_RS08370	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
OCUBac02_RS08385	COG0314	molybdopterin synthase activity
OCUBac02_RS08395	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
OCUBac02_RS08400	COG0322	excinuclease ABC activity
OCUBac02_RS08405	COG1278	Cold shock
OCUBac02_RS08410	COG0828	Belongs to the bacterial ribosomal protein bS21 family
OCUBac02_RS08425	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
OCUBac02_RS08445	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS08450	COG0463	Glycosyl transferase, family 2
OCUBac02_RS08455	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
OCUBac02_RS08465	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
OCUBac02_RS08490	COG0640	Transcriptional regulator
OCUBac02_RS08545	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
OCUBac02_RS08565	COG0066	3-isopropylmalate dehydratase activity
OCUBac02_RS08580	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
OCUBac02_RS08590	COG0335	large ribosomal subunit rRNA binding
OCUBac02_RS08595	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS08610	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
OCUBac02_RS08615	COG0318	PFAM AMP-dependent synthetase and ligase
OCUBac02_RS08625	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
OCUBac02_RS08630	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
OCUBac02_RS08645	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
OCUBac02_RS08650	COG1280	lysine exporter protein (LysE YggA)
OCUBac02_RS08665	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
OCUBac02_RS08675	COG0228	four-way junction DNA binding
OCUBac02_RS08680	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
OCUBac02_RS08690	COG0336	Belongs to the RNA methyltransferase TrmD family
OCUBac02_RS08700	COG0436	Aminotransferase
OCUBac02_RS08705	COG1671	Belongs to the UPF0178 family
OCUBac02_RS08715	COG2133	pyrroloquinoline quinone binding
OCUBac02_RS08730	COG2951	lytic endotransglycosylase activity
OCUBac02_RS08735	COG0251	oxidation-reduction process
OCUBac02_RS08740	COG0473	3-isopropylmalate dehydrogenase activity
OCUBac02_RS08745	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
OCUBac02_RS08760	COG0583	DNA-binding transcription factor activity
OCUBac02_RS08765	COG0492	ferredoxin-NADP+ reductase activity
OCUBac02_RS08775	COG1522	sequence-specific DNA binding
OCUBac02_RS08785	COG2095	MarC family integral membrane protein
OCUBac02_RS08790	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
OCUBac02_RS08795	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
OCUBac02_RS08800	COG0523	cobalamin synthesis protein
OCUBac02_RS08805	COG2814	Major facilitator Superfamily
OCUBac02_RS08815	COG4106	trans-aconitate 2-methyltransferase activity
OCUBac02_RS08845	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
OCUBac02_RS08850	COG0697	spore germination
OCUBac02_RS08860	COG2346	COG2346, Truncated hemoglobins
OCUBac02_RS08865	COG0287	Prephenate dehydrogenase
OCUBac02_RS08875	COG0505	Belongs to the CarA family
OCUBac02_RS08900	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
OCUBac02_RS08915	COG0640	Transcriptional regulator
OCUBac02_RS08920	COG1280	lysine exporter protein (LysE YggA)
OCUBac02_RS08925	COG0432	Pfam Uncharacterised protein family UPF0047
OCUBac02_RS08945	COG1607	acyl-coa hydrolase
OCUBac02_RS08950	COG0840	transmembrane signaling receptor activity
OCUBac02_RS08965	COG0584	glycerophosphoryl diester phosphodiesterase
OCUBac02_RS08970	COG0395	ABC-type sugar transport system, permease component
OCUBac02_RS08975	COG1175	transmembrane transport
OCUBac02_RS08995	COG1070	Carbohydrate kinase
OCUBac02_RS09020	COG0601	transmembrane transport
OCUBac02_RS09025	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS09030	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS09060	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
OCUBac02_RS09065	COG0765	amino acid transport
OCUBac02_RS09070	COG0765	amino acid transport
OCUBac02_RS09075	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS09080	COG1024	Enoyl-CoA hydratase
OCUBac02_RS09090	COG1609	Transcriptional regulator
OCUBac02_RS09100	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS09110	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
OCUBac02_RS09115	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCUBac02_RS09125	COG1804	L-carnitine dehydratase bile acid-inducible protein F
OCUBac02_RS09185	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCUBac02_RS09200	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
OCUBac02_RS09205	COG1305	Transglutaminase-like
OCUBac02_RS09225	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS09235	COG0747	negative chemotaxis
OCUBac02_RS09240	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
OCUBac02_RS09245	COG0583	DNA-binding transcription factor activity
OCUBac02_RS09260	COG0438	transferase activity, transferring glycosyl groups
OCUBac02_RS09280	COG0489	protein tyrosine kinase activity
OCUBac02_RS09280	COG3206	protein involved in exopolysaccharide biosynthesis
OCUBac02_RS09300	COG4251	negative regulation of phosphorylation
OCUBac02_RS09300	COG5001	Diguanylate cyclase
OCUBac02_RS09300	COG2203	Gaf domain
OCUBac02_RS09300	COG3706	GGDEF domain
OCUBac02_RS09305	COG2201	protein-glutamate methylesterase activity
OCUBac02_RS09335	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCUBac02_RS09350	COG2358	TRAP transporter, solute receptor (TAXI family
OCUBac02_RS09355	COG2223	nitrite transmembrane transporter activity
OCUBac02_RS09365	COG0840	transmembrane signaling receptor activity
OCUBac02_RS09390	COG2198	Histidine kinase
OCUBac02_RS09390	COG0643	Histidine kinase
OCUBac02_RS09395	COG0835	chemotaxis
OCUBac02_RS09400	COG0840	transmembrane signaling receptor activity
OCUBac02_RS09405	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
OCUBac02_RS09410	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
OCUBac02_RS09415	COG2201	protein-glutamate methylesterase activity
OCUBac02_RS09420	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS09425	COG0386	Belongs to the glutathione peroxidase family
OCUBac02_RS09430	COG0521	Mo-molybdopterin cofactor biosynthetic process
OCUBac02_RS09445	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
OCUBac02_RS09455	COG0667	Aldo Keto reductase
OCUBac02_RS09495	COG1278	Cold shock
OCUBac02_RS09535	COG0456	acetyltransferase
OCUBac02_RS09545	COG0577	efflux transmembrane transporter activity
OCUBac02_RS09545	COG1136	(ABC) transporter
OCUBac02_RS09550	COG0577	efflux transmembrane transporter activity
OCUBac02_RS09550	COG1136	(ABC) transporter
OCUBac02_RS09555	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCUBac02_RS09560	COG3023	N-Acetylmuramoyl-L-alanine amidase
OCUBac02_RS09565	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
OCUBac02_RS09580	COG1764	response to oxidative stress
OCUBac02_RS09585	COG1846	Transcriptional regulator
OCUBac02_RS09590	COG2001	Belongs to the MraZ family
OCUBac02_RS09610	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
OCUBac02_RS09620	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
OCUBac02_RS09625	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
OCUBac02_RS09640	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
OCUBac02_RS09645	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
OCUBac02_RS09650	COG0812	UDP-N-acetylmuramate dehydrogenase activity
OCUBac02_RS09655	COG0697	spore germination
OCUBac02_RS09665	COG1181	Belongs to the D-alanine--D-alanine ligase family
OCUBac02_RS09670	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
OCUBac02_RS09675	COG0849	cell division
OCUBac02_RS09680	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
OCUBac02_RS09690	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
OCUBac02_RS09695	COG0497	DNA recombination
OCUBac02_RS09715	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
OCUBac02_RS09740	COG0006	proline dipeptidase activity
OCUBac02_RS09750	COG2264	protein methyltransferase activity
OCUBac02_RS09755	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
OCUBac02_RS09760	COG1733	regulation of RNA biosynthetic process
OCUBac02_RS09765	COG0454	-acetyltransferase
OCUBac02_RS09785	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS09790	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
OCUBac02_RS09805	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
OCUBac02_RS09820	COG0277	FAD linked oxidase domain protein
OCUBac02_RS09840	COG0114	fumarate hydratase activity
OCUBac02_RS09875	COG0330	HflC and HflK could
OCUBac02_RS09880	COG0330	HflC and HflK could
OCUBac02_RS09900	COG3830	Belongs to the UPF0237 family
OCUBac02_RS09900	COG0560	Phosphoserine phosphatase
OCUBac02_RS09905	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
OCUBac02_RS09910	COG3706	GGDEF domain
OCUBac02_RS09915	COG0028	Belongs to the TPP enzyme family
OCUBac02_RS09920	COG1794	racemase activity, acting on amino acids and derivatives
OCUBac02_RS09930	COG0440	acetolactate synthase activity
OCUBac02_RS09945	COG1309	transcriptional regulator
OCUBac02_RS09950	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
OCUBac02_RS09970	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
OCUBac02_RS09985	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
OCUBac02_RS09995	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
OCUBac02_RS10005	COG0384	phenazine biosynthesis protein PhzF
OCUBac02_RS10030	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
OCUBac02_RS10035	COG2233	PERMEase
OCUBac02_RS10095	COG0492	ferredoxin-NADP+ reductase activity
OCUBac02_RS10105	COG1652	LysM domain
OCUBac02_RS10110	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
OCUBac02_RS10125	COG3909	cytochrome
OCUBac02_RS10130	COG2010	Cytochrome c
OCUBac02_RS10140	COG1396	sequence-specific DNA binding
OCUBac02_RS10145	COG0697	spore germination
OCUBac02_RS10150	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS10170	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
OCUBac02_RS10180	COG3106	COG3106 Predicted ATPase
OCUBac02_RS10185	COG3768	UPF0283 membrane protein
OCUBac02_RS10210	COG5443	negative regulation of bacterial-type flagellum assembly
OCUBac02_RS10240	COG1706	bacterial-type flagellum-dependent cell motility
OCUBac02_RS10255	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS10265	COG0538	isocitrate dehydrogenase activity
OCUBac02_RS10280	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
OCUBac02_RS10285	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
OCUBac02_RS10290	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
OCUBac02_RS10300	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
OCUBac02_RS10305	COG1684	flagellar biosynthetic protein fliR
OCUBac02_RS10310	COG1987	bacterial-type flagellum assembly
OCUBac02_RS10315	COG1677	Flagellar hook-basal body complex protein FliE
OCUBac02_RS10320	COG1558	bacterial-type flagellum-dependent cell motility
OCUBac02_RS10335	COG1338	Plays a role in the flagellum-specific transport system
OCUBac02_RS10350	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
OCUBac02_RS10355	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
OCUBac02_RS10370	COG1216	Glycosyl transferase, family 2
OCUBac02_RS10370	COG0438	transferase activity, transferring glycosyl groups
OCUBac02_RS10380	COG0110	maltose O-acetyltransferase activity
OCUBac02_RS10430	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
OCUBac02_RS10475	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
OCUBac02_RS10575	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
OCUBac02_RS10580	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
OCUBac02_RS10590	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
OCUBac02_RS10605	COG3842	ATPase activity
OCUBac02_RS10635	COG0463	Glycosyl transferase, family 2
OCUBac02_RS10675	COG4786	Flagellar basal body rod
OCUBac02_RS10680	COG4786	Flagellar basal body rod
OCUBac02_RS10690	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
OCUBac02_RS10695	COG0659	secondary active sulfate transmembrane transporter activity
OCUBac02_RS10715	COG1696	Membrane protein involved in D-alanine export
OCUBac02_RS10725	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCUBac02_RS10730	COG1131	(ABC) transporter
OCUBac02_RS10735	COG0842	Transport permease protein
OCUBac02_RS10740	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
OCUBac02_RS10790	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
OCUBac02_RS10815	COG4206	TonB-dependent receptor
OCUBac02_RS10830	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCUBac02_RS10840	COG0625	glutathione transferase activity
OCUBac02_RS10850	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
OCUBac02_RS10875	COG0683	leucine binding
OCUBac02_RS10900	COG0559	Belongs to the binding-protein-dependent transport system permease family
OCUBac02_RS10930	COG0840	transmembrane signaling receptor activity
OCUBac02_RS10950	COG1280	lysine exporter protein (LysE YggA)
OCUBac02_RS10980	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
OCUBac02_RS10980	COG3608	succinylglutamate desuccinylase aspartoacylase
OCUBac02_RS10985	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
OCUBac02_RS10995	COG5425	PFAM Usg family protein
OCUBac02_RS11025	COG2308	Evidence 4 Homologs of previously reported genes of
OCUBac02_RS11035	COG2003	Belongs to the UPF0758 family
OCUBac02_RS11040	COG0024	Methionine aminopeptidase
OCUBac02_RS11045	COG3437	response regulator, receiver
OCUBac02_RS11055	COG1546	Belongs to the CinA family
OCUBac02_RS11055	COG1058	Belongs to the CinA family
OCUBac02_RS11065	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
OCUBac02_RS11105	COG1253	flavin adenine dinucleotide binding
OCUBac02_RS11135	COG0596	Alpha beta hydrolase
OCUBac02_RS11145	COG0583	DNA-binding transcription factor activity
OCUBac02_RS11215	COG1752	Esterase of the alpha-beta hydrolase superfamily
OCUBac02_RS11220	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
OCUBac02_RS11225	COG0302	gtp cyclohydrolase
OCUBac02_RS11240	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
OCUBac02_RS11245	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
OCUBac02_RS11275	COG0778	Nitroreductase
OCUBac02_RS11310	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
OCUBac02_RS11345	COG0477	Major facilitator Superfamily
OCUBac02_RS11350	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
OCUBac02_RS11385	COG2885	chlorophyll binding
OCUBac02_RS11400	COG5001	Diguanylate cyclase
OCUBac02_RS11415	COG2205	protein histidine kinase activity
OCUBac02_RS11420	COG2202	Pas domain
OCUBac02_RS11420	COG2205	protein histidine kinase activity
OCUBac02_RS11440	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
OCUBac02_RS11460	COG1250	3-hydroxyacyl-CoA dehydrogenase
OCUBac02_RS11470	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
OCUBac02_RS11475	COG1802	Transcriptional regulator
OCUBac02_RS11510	COG5001	Diguanylate cyclase
OCUBac02_RS11525	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
OCUBac02_RS11525	COG4797	methyltransferase
OCUBac02_RS11560	COG2885	chlorophyll binding
OCUBac02_RS11595	COG3501	Rhs element vgr protein
OCUBac02_RS11600	COG2885	chlorophyll binding
OCUBac02_RS11660	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
OCUBac02_RS11665	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
OCUBac02_RS11670	COG3657	addiction module killer protein
OCUBac02_RS11675	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
OCUBac02_RS11690	COG2226	methyltransferase
OCUBac02_RS11705	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
OCUBac02_RS11710	COG0081	regulation of translation
OCUBac02_RS11715	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
OCUBac02_RS11720	COG0222	ribosome binding
OCUBac02_RS11725	COG0085	RNA polymerase activity
OCUBac02_RS11730	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
OCUBac02_RS11735	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
OCUBac02_RS11740	COG0049	tRNA binding
OCUBac02_RS11745	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
OCUBac02_RS11750	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
OCUBac02_RS11755	COG0051	transcription antitermination factor activity, RNA binding
OCUBac02_RS11760	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
OCUBac02_RS11765	COG0088	Forms part of the polypeptide exit tunnel
OCUBac02_RS11770	COG0089	rRNA binding
OCUBac02_RS11775	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
OCUBac02_RS11780	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
OCUBac02_RS11785	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
OCUBac02_RS11790	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
OCUBac02_RS11795	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
OCUBac02_RS11800	COG0255	Belongs to the universal ribosomal protein uL29 family
OCUBac02_RS11805	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
OCUBac02_RS11810	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
OCUBac02_RS11815	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
OCUBac02_RS11820	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
OCUBac02_RS11825	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
OCUBac02_RS11830	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
OCUBac02_RS11835	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
OCUBac02_RS11840	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
OCUBac02_RS11845	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
OCUBac02_RS11850	COG1841	ribosomal large subunit assembly
OCUBac02_RS11855	COG0200	Binds to the 23S rRNA
OCUBac02_RS11865	COG0563	adenylate kinase activity
OCUBac02_RS11870	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
OCUBac02_RS11875	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
OCUBac02_RS11880	COG0202	RNA polymerase activity
OCUBac02_RS11885	COG0203	ribosomal protein L17
OCUBac02_RS11890	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
OCUBac02_RS11895	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
OCUBac02_RS11910	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
OCUBac02_RS11915	COG0564	pseudouridine synthase activity
OCUBac02_RS11925	COG0546	phosphoglycolate phosphatase activity
OCUBac02_RS11935	COG4770	biotin carboxylase activity
OCUBac02_RS11940	COG0625	glutathione transferase activity
OCUBac02_RS11950	COG1434	Gram-negative-bacterium-type cell wall biogenesis
OCUBac02_RS11975	COG1132	(ABC) transporter
OCUBac02_RS11985	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS11990	COG0598	Magnesium transport protein CorA
OCUBac02_RS12015	COG0321	lipoyl(octanoyl) transferase activity
OCUBac02_RS12025	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
OCUBac02_RS12035	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS12040	COG1115	amino acid carrier protein
OCUBac02_RS12055	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS12070	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
OCUBac02_RS12080	COG0484	heat shock protein binding
OCUBac02_RS12085	COG1686	Belongs to the peptidase S11 family
OCUBac02_RS12110	COG1388	LysM domain
OCUBac02_RS12110	COG1376	ErfK ybiS ycfS ynhG family protein
OCUBac02_RS12125	COG2721	sulfolactate sulfo-lyase activity
OCUBac02_RS12135	COG0436	Aminotransferase
OCUBac02_RS12140	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
OCUBac02_RS12145	COG1280	lysine exporter protein (LysE YggA)
OCUBac02_RS12150	COG1278	Cold shock
OCUBac02_RS12155	COG3437	response regulator, receiver
OCUBac02_RS12160	COG0316	Belongs to the HesB IscA family
OCUBac02_RS12165	COG0232	Belongs to the dGTPase family. Type 2 subfamily
OCUBac02_RS12170	COG0018	arginyl-trna synthetase
OCUBac02_RS12180	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
OCUBac02_RS12185	COG1472	Belongs to the glycosyl hydrolase 3 family
OCUBac02_RS12190	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
OCUBac02_RS12195	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
OCUBac02_RS12200	COG3842	ATPase activity
OCUBac02_RS12205	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
OCUBac02_RS12210	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
OCUBac02_RS12215	COG0805	protein transport
OCUBac02_RS12225	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
OCUBac02_RS12230	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
OCUBac02_RS12235	COG4942	peptidase
OCUBac02_RS12245	COG1862	Preprotein translocase
OCUBac02_RS12250	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
OCUBac02_RS12260	COG3737	Protein of unknown function (DUF498/DUF598)
OCUBac02_RS12270	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
OCUBac02_RS12305	COG0747	negative chemotaxis
OCUBac02_RS12320	COG0444	Belongs to the ABC transporter superfamily
OCUBac02_RS12325	COG4608	Belongs to the ABC transporter superfamily
OCUBac02_RS12340	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS12350	COG1414	Transcriptional regulator
OCUBac02_RS12355	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
OCUBac02_RS12360	COG1804	L-carnitine dehydratase bile acid-inducible protein F
OCUBac02_RS12365	COG1024	Enoyl-CoA hydratase
OCUBac02_RS12370	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
OCUBac02_RS12380	COG0625	glutathione transferase activity
OCUBac02_RS12385	COG1393	Belongs to the ArsC family
OCUBac02_RS12390	COG0343	queuine tRNA-ribosyltransferase activity
OCUBac02_RS12420	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
OCUBac02_RS12430	COG2877	3-deoxy-8-phosphooctulonate synthase activity
OCUBac02_RS12435	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
OCUBac02_RS12460	COG1595	DNA-templated transcription, initiation
OCUBac02_RS12465	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
OCUBac02_RS12470	COG0537	adenosine 5'-monophosphoramidase activity
OCUBac02_RS12500	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
OCUBac02_RS12520	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCUBac02_RS12525	COG0626	cystathionine gamma-synthase activity
OCUBac02_RS12530	COG1473	amidohydrolase
OCUBac02_RS12535	COG0765	amino acid transport
OCUBac02_RS12540	COG0765	amino acid transport
OCUBac02_RS12550	COG1126	abc transporter atp-binding protein
OCUBac02_RS12555	COG0583	DNA-binding transcription factor activity
OCUBac02_RS12570	COG0698	ribose 5-phosphate isomerase
OCUBac02_RS12580	COG4176	ABC-type proline glycine betaine transport system permease component
OCUBac02_RS12585	COG0629	single-stranded DNA binding
OCUBac02_RS12605	COG0483	inositol monophosphate 1-phosphatase activity
OCUBac02_RS12610	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
OCUBac02_RS12620	COG0395	ABC-type sugar transport system, permease component
OCUBac02_RS12625	COG1175	transmembrane transport
OCUBac02_RS12655	COG1609	Transcriptional regulator
OCUBac02_RS12680	COG0028	Belongs to the TPP enzyme family
OCUBac02_RS12700	COG0583	DNA-binding transcription factor activity
OCUBac02_RS12705	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
OCUBac02_RS12715	COG1012	belongs to the aldehyde dehydrogenase family
OCUBac02_RS12720	COG1840	ABC-type Fe3 transport system, periplasmic component
OCUBac02_RS12725	COG3842	ATPase activity
OCUBac02_RS12730	COG1178	ABC-type Fe3 transport system permease component
OCUBac02_RS12750	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
OCUBac02_RS12765	COG1349	DNA-binding transcription factor activity
OCUBac02_RS12775	COG0154	amidase activity
OCUBac02_RS12810	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCUBac02_RS12820	COG3964	amidohydrolase
OCUBac02_RS12830	COG0601	transmembrane transport
OCUBac02_RS12840	COG1921	L-seryl-tRNASec selenium transferase activity
OCUBac02_RS12850	COG1126	abc transporter atp-binding protein
OCUBac02_RS12855	COG0765	amino acid transport
OCUBac02_RS12860	COG0765	amino acid transport
OCUBac02_RS12885	COG2222	sugar isomerase
OCUBac02_RS12890	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCUBac02_RS12905	COG3842	ATPase activity
OCUBac02_RS12910	COG4149	molybdate abc transporter
OCUBac02_RS12920	COG2204	response regulator
OCUBac02_RS12925	COG4191	Histidine kinase
OCUBac02_RS12955	COG0714	Associated with various cellular activities
OCUBac02_RS12970	COG1228	amidohydrolase
OCUBac02_RS13015	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
OCUBac02_RS13020	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
OCUBac02_RS13025	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
OCUBac02_RS13035	COG0649	NAD binding
OCUBac02_RS13045	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
OCUBac02_RS13055	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
OCUBac02_RS13065	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
OCUBac02_RS13075	COG0713	ATP synthesis coupled electron transport
OCUBac02_RS13090	COG1007	ATP synthesis coupled electron transport
OCUBac02_RS13105	COG0346	lactoylglutathione lyase activity
OCUBac02_RS13135	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
OCUBac02_RS13145	COG1160	GTP binding
OCUBac02_RS13150	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
OCUBac02_RS13150	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCUBac02_RS13155	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS13160	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
OCUBac02_RS13175	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
OCUBac02_RS13180	COG0305	Participates in initiation and elongation during chromosome replication
OCUBac02_RS13185	COG0359	binds to the 23S rRNA
OCUBac02_RS13195	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
OCUBac02_RS13200	COG0360	Binds together with S18 to 16S ribosomal RNA
OCUBac02_RS13205	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
OCUBac02_RS13215	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
OCUBac02_RS13220	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
OCUBac02_RS13225	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
OCUBac02_RS13230	COG1561	YicC-like family, N-terminal region
OCUBac02_RS13235	COG0194	GDP metabolic process
OCUBac02_RS13240	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
OCUBac02_RS13245	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
OCUBac02_RS13250	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
OCUBac02_RS13265	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
OCUBac02_RS13295	COG0488	(ABC) transporter
OCUBac02_RS13305	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
OCUBac02_RS13310	COG0442	prolyl-tRNA aminoacylation
OCUBac02_RS13320	COG1136	(ABC) transporter
OCUBac02_RS13330	COG1335	isochorismatase
OCUBac02_RS13340	COG0052	Belongs to the universal ribosomal protein uS2 family
OCUBac02_RS13340	COG3743	rRNA binding
OCUBac02_RS13345	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
OCUBac02_RS13350	COG0528	UMP kinase activity
OCUBac02_RS13355	COG0346	lactoylglutathione lyase activity
OCUBac02_RS13360	COG0233	cytoplasmic translational termination
OCUBac02_RS13365	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
OCUBac02_RS13375	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
OCUBac02_RS13380	COG0750	zinc metalloprotease
OCUBac02_RS13385	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
OCUBac02_RS13390	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
OCUBac02_RS13395	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
OCUBac02_RS13400	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
OCUBac02_RS13405	COG3494	Protein of unknown function (DUF1009)
OCUBac02_RS13410	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
OCUBac02_RS13415	COG0372	Belongs to the citrate synthase family
OCUBac02_RS13420	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
OCUBac02_RS13430	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
OCUBac02_RS13435	COG0303	'Molybdopterin
OCUBac02_RS13440	COG0315	cyclic pyranopterin monophosphate synthase activity
OCUBac02_RS13445	COG0134	indole-3-glycerol-phosphate synthase activity
OCUBac02_RS13450	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
OCUBac02_RS13460	COG0667	Aldo Keto reductase
OCUBac02_RS13495	COG2301	Belongs to the HpcH HpaI aldolase family
OCUBac02_RS13500	COG0679	Auxin Efflux Carrier
OCUBac02_RS13510	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
OCUBac02_RS13525	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
OCUBac02_RS13535	COG1765	OsmC-like protein
OCUBac02_RS13540	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
OCUBac02_RS13545	COG4208	sulfate ABC transporter
OCUBac02_RS13560	COG1648	precorrin-2 dehydrogenase activity
OCUBac02_RS13560	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
OCUBac02_RS13575	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
OCUBac02_RS13585	COG0633	Ferredoxin
OCUBac02_RS13625	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
OCUBac02_RS13645	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
OCUBac02_RS13650	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
OCUBac02_RS13655	COG0508	dehydrogenase complex catalyzes the overall conversion of
OCUBac02_RS13655	COG0022	dehydrogenase e1 component
OCUBac02_RS13660	COG0508	dehydrogenase complex catalyzes the overall conversion of
OCUBac02_RS13670	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
OCUBac02_RS13685	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
OCUBac02_RS13690	COG2867	negative regulation of translational initiation
OCUBac02_RS13700	COG1058	Belongs to the CinA family
OCUBac02_RS13700	COG1546	Belongs to the CinA family
OCUBac02_RS13705	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
OCUBac02_RS13705	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
OCUBac02_RS13720	COG2204	response regulator
OCUBac02_RS13725	COG5000	phosphorelay sensor kinase activity
OCUBac02_RS13730	COG2204	response regulator
OCUBac02_RS13735	COG1923	regulation of RNA biosynthetic process
OCUBac02_RS13740	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
OCUBac02_RS13745	COG3956	TIGRFAM MazG family protein
OCUBac02_RS13755	COG2137	regulation of response to DNA damage stimulus
OCUBac02_RS13780	COG1686	Belongs to the peptidase S11 family
OCUBac02_RS13800	COG0084	hydrolase, TatD family'
OCUBac02_RS13810	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
OCUBac02_RS13855	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS13865	COG0625	glutathione transferase activity
OCUBac02_RS13870	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS13875	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS13895	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
OCUBac02_RS13910	COG0765	amino acid transport
OCUBac02_RS13920	COG1126	abc transporter atp-binding protein
OCUBac02_RS13940	COG3485	protocatechuate 3,4-dioxygenase
OCUBac02_RS13945	COG3485	protocatechuate 3,4-dioxygenase
OCUBac02_RS13950	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
OCUBac02_RS13955	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
OCUBac02_RS13970	COG2832	Protein of unknown function (DUF454)
OCUBac02_RS13975	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
OCUBac02_RS13980	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
OCUBac02_RS13990	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
OCUBac02_RS13995	COG2943	transferase activity, transferring hexosyl groups
OCUBac02_RS14005	COG0754	glutathionylspermidine amidase activity
OCUBac02_RS14025	COG0504	CTP synthase activity
OCUBac02_RS14035	COG0149	triose-phosphate isomerase activity
OCUBac02_RS14045	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
OCUBac02_RS14070	COG0129	dihydroxy-acid dehydratase activity
OCUBac02_RS14080	COG0525	valine-tRNA ligase activity
OCUBac02_RS14085	COG0783	Belongs to the Dps family
OCUBac02_RS14110	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
OCUBac02_RS14135	COG0415	Belongs to the DNA photolyase family
OCUBac02_RS14145	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
OCUBac02_RS14160	COG0725	ABC transporter, periplasmic molybdate-binding protein
OCUBac02_RS14165	COG4149	molybdate abc transporter
OCUBac02_RS14170	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
OCUBac02_RS14175	COG2217	Heavy metal translocating P-type atpase
OCUBac02_RS14185	COG1473	amidohydrolase
OCUBac02_RS14190	COG1846	Transcriptional regulator
OCUBac02_RS14225	COG0848	biopolymer transport protein
OCUBac02_RS14235	COG2005	Transcriptional regulator
OCUBac02_RS14240	COG1956	GAF domain-containing protein
OCUBac02_RS14255	COG1126	abc transporter atp-binding protein
OCUBac02_RS14260	COG0765	amino acid transport
OCUBac02_RS14265	COG4597	amino acid ABC transporter
OCUBac02_RS14270	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCUBac02_RS14275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCUBac02_RS14280	COG0626	cystathionine gamma-synthase activity
OCUBac02_RS14285	COG0248	Ppx GppA phosphatase
OCUBac02_RS14290	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
OCUBac02_RS14300	COG0628	permease
OCUBac02_RS14310	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
OCUBac02_RS14315	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
OCUBac02_RS14320	COG0625	glutathione transferase activity
OCUBac02_RS14335	COG0105	UTP biosynthetic process
OCUBac02_RS14370	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
OCUBac02_RS14390	COG0154	amidase activity
OCUBac02_RS14395	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
OCUBac02_RS14400	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
OCUBac02_RS14405	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
OCUBac02_RS14415	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
OCUBac02_RS14425	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
OCUBac02_RS14450	COG0758	DNA mediated transformation
OCUBac02_RS14455	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
OCUBac02_RS14460	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
OCUBac02_RS14465	COG0540	Belongs to the ATCase OTCase family
OCUBac02_RS14475	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
OCUBac02_RS14500	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS14510	COG1024	Enoyl-CoA hydratase
OCUBac02_RS14515	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS14535	COG0175	sulfate reduction
OCUBac02_RS14540	COG0175	sulfate reduction
OCUBac02_RS14545	COG0587	DNA-directed DNA polymerase activity
OCUBac02_RS14570	COG4771	TonB-dependent receptor
OCUBac02_RS14585	COG4178	(ABC) transporter
OCUBac02_RS14590	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCUBac02_RS14600	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCUBac02_RS14605	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
OCUBac02_RS14610	COG0402	S-adenosylhomocysteine deaminase activity
OCUBac02_RS14640	COG1335	isochorismatase
OCUBac02_RS14650	COG4566	intracellular signal transduction
OCUBac02_RS14655	COG4191	Histidine kinase
OCUBac02_RS14705	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
OCUBac02_RS14725	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
OCUBac02_RS14740	COG4977	sequence-specific DNA binding
OCUBac02_RS14740	COG1917	Cupin 2, conserved barrel domain protein
OCUBac02_RS14755	COG0436	Aminotransferase
OCUBac02_RS14790	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
OCUBac02_RS14790	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
OCUBac02_RS14795	COG0347	Belongs to the P(II) protein family
OCUBac02_RS14800	COG0174	glutamine synthetase
OCUBac02_RS14825	COG0187	DNA topoisomerase II activity
OCUBac02_RS14830	COG0583	DNA-binding transcription factor activity
OCUBac02_RS14845	COG0513	Belongs to the DEAD box helicase family
OCUBac02_RS14850	COG4251	negative regulation of phosphorylation
OCUBac02_RS14850	COG2203	Gaf domain
OCUBac02_RS14850	COG3706	GGDEF domain
OCUBac02_RS14850	COG5001	Diguanylate cyclase
OCUBac02_RS14855	COG3070	regulator of competence-specific genes
OCUBac02_RS14860	COG0316	Belongs to the HesB IscA family
OCUBac02_RS14865	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
OCUBac02_RS14875	COG0384	phenazine biosynthesis protein PhzF
OCUBac02_RS14885	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
OCUBac02_RS14890	COG1942	4-Oxalocrotonate Tautomerase
OCUBac02_RS14895	COG0719	Fe-S assembly protein
OCUBac02_RS14900	COG0396	ATPase activity
OCUBac02_RS14905	COG0719	Fe-S assembly protein
OCUBac02_RS14915	COG2945	thiolester hydrolase activity
OCUBac02_RS14920	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
OCUBac02_RS14930	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
OCUBac02_RS14935	COG0739	heme binding
OCUBac02_RS14955	COG1530	ribonuclease E activity
OCUBac02_RS14965	COG0668	transmembrane transport
OCUBac02_RS14970	COG0436	Aminotransferase
OCUBac02_RS14975	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
OCUBac02_RS14975	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
OCUBac02_RS14980	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
OCUBac02_RS14985	COG0511	ligase activity, forming carbon-carbon bonds
OCUBac02_RS14990	COG0439	Biotin carboxylase
OCUBac02_RS15010	COG0519	Catalyzes the synthesis of GMP from XMP
OCUBac02_RS15010	COG0518	GMP synthase (glutamine-hydrolyzing) activity
OCUBac02_RS15025	COG0584	glycerophosphoryl diester phosphodiesterase
OCUBac02_RS15050	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
OCUBac02_RS15055	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
OCUBac02_RS15060	COG0740	serine-type endopeptidase activity
OCUBac02_RS15065	COG0544	peptidyl-prolyl cis-trans isomerase activity
OCUBac02_RS15080	COG3265	gluconokinase activity
OCUBac02_RS15085	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
OCUBac02_RS15100	COG0557	exoribonuclease II activity
OCUBac02_RS15130	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
OCUBac02_RS15145	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCUBac02_RS15150	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
OCUBac02_RS15170	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS15180	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
OCUBac02_RS15185	COG0248	Ppx GppA phosphatase
OCUBac02_RS15190	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
OCUBac02_RS15205	COG0477	Major facilitator Superfamily
OCUBac02_RS15230	COG1840	ABC-type Fe3 transport system, periplasmic component
OCUBac02_RS15235	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
OCUBac02_RS15245	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
OCUBac02_RS15250	COG0740	serine-type endopeptidase activity
OCUBac02_RS15260	COG0640	Transcriptional regulator
OCUBac02_RS15265	COG2095	MarC family integral membrane protein
OCUBac02_RS15275	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
OCUBac02_RS15285	COG1819	glycosyl
OCUBac02_RS15295	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
OCUBac02_RS15315	COG1431	PFAM Stem cell self-renewal protein Piwi
OCUBac02_RS15360	COG0798	PFAM Bile acid sodium symporter
OCUBac02_RS15365	COG1393	Belongs to the ArsC family
OCUBac02_RS15385	COG0446	pyridine nucleotide-disulphide oxidoreductase
OCUBac02_RS15405	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
OCUBac02_RS15425	COG3258	Cytochrome c
OCUBac02_RS15430	COG2010	Cytochrome c
OCUBac02_RS15460	COG0640	Transcriptional regulator
OCUBac02_RS15485	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
OCUBac02_RS15490	COG4988	ABC transporter
OCUBac02_RS15495	COG1271	oxidase subunit
OCUBac02_RS15500	COG1294	oxidase, subunit
OCUBac02_RS15520	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS15525	COG0395	ABC-type sugar transport system, permease component
OCUBac02_RS15530	COG1175	transmembrane transport
OCUBac02_RS15535	COG1653	transport
OCUBac02_RS15545	COG4948	Mandelate Racemase Muconate Lactonizing
OCUBac02_RS15565	COG1091	dTDP-4-dehydrorhamnose reductase activity
OCUBac02_RS15585	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
OCUBac02_RS15600	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
OCUBac02_RS15605	COG0438	transferase activity, transferring glycosyl groups
OCUBac02_RS15605	COG1216	Glycosyl transferase, family 2
OCUBac02_RS15610	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS15630	COG1129	ABC transporter
OCUBac02_RS15635	COG1250	3-hydroxyacyl-CoA dehydrogenase
OCUBac02_RS15640	COG3246	L-lysine catabolic process to acetate
OCUBac02_RS15645	COG2067	long-chain fatty acid transport protein
OCUBac02_RS15655	COG0179	Fumarylacetoacetate (FAA) hydrolase
OCUBac02_RS15675	COG0010	Belongs to the arginase family
OCUBac02_RS15685	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS15690	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
OCUBac02_RS15695	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
OCUBac02_RS15705	COG1024	Enoyl-CoA hydratase
OCUBac02_RS15710	COG1832	CoA-binding protein
OCUBac02_RS15720	COG1612	heme a metabolic process
OCUBac02_RS15730	COG0726	polysaccharide deacetylase
OCUBac02_RS15790	COG0400	carboxylic ester hydrolase activity
OCUBac02_RS15795	COG0346	lactoylglutathione lyase activity
OCUBac02_RS15885	COG1160	GTP binding
OCUBac02_RS15955	COG0776	regulation of translation
OCUBac02_RS15960	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
OCUBac02_RS15965	COG0416	fatty acid biosynthetic process
OCUBac02_RS15995	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
OCUBac02_RS16000	COG3257	ureidoglycine aminohydrolase activity
OCUBac02_RS16005	COG2814	Major facilitator Superfamily
OCUBac02_RS16010	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
OCUBac02_RS16020	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
OCUBac02_RS16030	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
OCUBac02_RS16030	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
OCUBac02_RS16035	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
OCUBac02_RS16040	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
OCUBac02_RS16045	COG0789	Transcriptional regulator
OCUBac02_RS16085	COG0113	porphobilinogen synthase activity
OCUBac02_RS16090	COG0559	Belongs to the binding-protein-dependent transport system permease family
OCUBac02_RS16095	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
OCUBac02_RS16105	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
OCUBac02_RS16110	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
OCUBac02_RS16110	COG0473	3-isopropylmalate dehydrogenase activity
OCUBac02_RS16115	COG2721	sulfolactate sulfo-lyase activity
OCUBac02_RS16120	COG2721	sulfolactate sulfo-lyase activity
OCUBac02_RS16145	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
OCUBac02_RS16150	COG1381	Involved in DNA repair and RecF pathway recombination
OCUBac02_RS16160	COG0583	DNA-binding transcription factor activity
OCUBac02_RS16170	COG1758	RNA polymerase activity
OCUBac02_RS16180	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
OCUBac02_RS16185	COG0736	holo-[acyl-carrier-protein] synthase activity
OCUBac02_RS16190	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
OCUBac02_RS16200	COG0571	ribonuclease III activity
OCUBac02_RS16205	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
OCUBac02_RS16220	COG2852	Protein conserved in bacteria
OCUBac02_RS16225	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
OCUBac02_RS16230	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
OCUBac02_RS16235	COG0741	lytic transglycosylase activity
OCUBac02_RS16265	COG0729	surface antigen
OCUBac02_RS16295	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
OCUBac02_RS16305	COG3300	MHYT domain
OCUBac02_RS16305	COG5001	Diguanylate cyclase
OCUBac02_RS16320	COG2968	Membrane
OCUBac02_RS16325	COG3038	cytochrome b561
OCUBac02_RS16340	COG0625	glutathione transferase activity
OCUBac02_RS16350	COG0604	alcohol dehydrogenase
OCUBac02_RS16370	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
OCUBac02_RS16395	COG1024	Enoyl-CoA hydratase
OCUBac02_RS16400	COG1902	pentaerythritol trinitrate reductase activity
OCUBac02_RS16405	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
OCUBac02_RS16420	COG2022	thiamine diphosphate biosynthetic process
OCUBac02_RS16445	COG0583	DNA-binding transcription factor activity
OCUBac02_RS16450	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS16470	COG0601	transmembrane transport
OCUBac02_RS16480	COG4172	Belongs to the ABC transporter superfamily
OCUBac02_RS16490	COG1802	Transcriptional regulator
OCUBac02_RS16500	COG1335	isochorismatase
OCUBac02_RS16530	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
OCUBac02_RS16540	COG0318	PFAM AMP-dependent synthetase and ligase
OCUBac02_RS16545	COG1176	ABC-type spermidine putrescine transport system, permease component I
OCUBac02_RS16550	COG3842	ATPase activity
OCUBac02_RS16560	COG1024	Enoyl-CoA hydratase
OCUBac02_RS16580	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCUBac02_RS16585	COG1309	transcriptional regulator
OCUBac02_RS16605	COG1120	ATPase activity
OCUBac02_RS16610	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
OCUBac02_RS16615	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
OCUBac02_RS16620	COG4948	Mandelate Racemase Muconate Lactonizing
OCUBac02_RS16650	COG1802	Transcriptional regulator
OCUBac02_RS16655	COG4948	Mandelate Racemase Muconate Lactonizing
OCUBac02_RS16660	COG2204	response regulator
OCUBac02_RS16665	COG4191	Histidine kinase
OCUBac02_RS16670	COG1301	dicarboxylic acid transport
OCUBac02_RS16680	COG0437	4 iron, 4 sulfur cluster binding
OCUBac02_RS16685	COG2864	formate dehydrogenase
OCUBac02_RS16695	COG1921	L-seryl-tRNASec selenium transferase activity
OCUBac02_RS16725	COG0709	Synthesizes selenophosphate from selenide and ATP
OCUBac02_RS16740	COG1252	NADH dehydrogenase
OCUBac02_RS16745	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
OCUBac02_RS16755	COG0424	maF-like protein
OCUBac02_RS16765	COG1183	phosphatidylcholine synthase activity
OCUBac02_RS16770	COG0688	phosphatidylethanolamine metabolic process
OCUBac02_RS16780	COG5265	(ABC) transporter
OCUBac02_RS16790	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
OCUBac02_RS16795	COG2852	Protein conserved in bacteria
OCUBac02_RS16800	COG0215	cysteine-tRNA ligase activity
OCUBac02_RS16810	COG3045	CreA protein
OCUBac02_RS16820	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
OCUBac02_RS16825	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
OCUBac02_RS16835	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
OCUBac02_RS16845	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
OCUBac02_RS16855	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
OCUBac02_RS16895	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
OCUBac02_RS16905	COG0546	phosphoglycolate phosphatase activity
OCUBac02_RS16930	COG1376	ErfK ybiS ycfS ynhG family protein
OCUBac02_RS16930	COG1388	LysM domain
OCUBac02_RS16940	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
OCUBac02_RS16975	COG2814	Major facilitator Superfamily
OCUBac02_RS16980	COG2084	Dehydrogenase
OCUBac02_RS17000	COG2814	Major facilitator Superfamily
OCUBac02_RS17020	COG0519	Catalyzes the synthesis of GMP from XMP
OCUBac02_RS17025	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
OCUBac02_RS17030	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
OCUBac02_RS17040	COG1573	uracil-dna glycosylase
OCUBac02_RS17065	COG2205	protein histidine kinase activity
OCUBac02_RS17065	COG2202	Pas domain
OCUBac02_RS17070	COG1181	Belongs to the D-alanine--D-alanine ligase family
OCUBac02_RS17075	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
OCUBac02_RS17080	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
OCUBac02_RS17095	COG0730	response to heat
OCUBac02_RS17100	COG5507	3-demethylubiquinone-9 3-methyltransferase
OCUBac02_RS17120	COG1360	Flagellar Motor Protein
OCUBac02_RS17125	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
OCUBac02_RS17130	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
OCUBac02_RS17135	COG4178	(ABC) transporter
OCUBac02_RS17140	COG4208	sulfate ABC transporter
OCUBac02_RS17145	COG1175	transmembrane transport
OCUBac02_RS17150	COG3842	ATPase activity
OCUBac02_RS17160	COG1802	Transcriptional regulator
OCUBac02_RS17165	COG1312	Catalyzes the dehydration of D-mannonate
OCUBac02_RS17170	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
OCUBac02_RS17175	COG1840	ABC-type Fe3 transport system, periplasmic component
OCUBac02_RS17190	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCUBac02_RS17210	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
OCUBac02_RS17215	COG0308	aminopeptidase N
OCUBac02_RS17220	COG2202	Pas domain
OCUBac02_RS17220	COG2205	protein histidine kinase activity
OCUBac02_RS17225	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
OCUBac02_RS17230	COG3850	Histidine kinase
OCUBac02_RS17230	COG0642	Histidine kinase
OCUBac02_RS17235	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS17240	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
OCUBac02_RS17250	COG3088	subunit of a heme lyase
OCUBac02_RS17255	COG1138	Cytochrome C-type biogenesis protein
OCUBac02_RS17260	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
OCUBac02_RS17265	COG4235	cytochrome complex assembly
OCUBac02_RS17270	COG5002	protein histidine kinase activity
OCUBac02_RS17275	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS17365	COG4695	Portal protein
OCUBac02_RS17385	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
OCUBac02_RS17390	COG1914	H( )-stimulated, divalent metal cation uptake system
OCUBac02_RS17395	COG0433	COG0433 Predicted ATPase
OCUBac02_RS17410	COG0351	phosphomethylpyrimidine kinase
OCUBac02_RS17425	COG1177	transmembrane transport
OCUBac02_RS17430	COG1176	ABC-type spermidine putrescine transport system, permease component I
OCUBac02_RS17435	COG3842	ATPase activity
OCUBac02_RS17480	COG1703	isobutyryl-CoA mutase activity
OCUBac02_RS17505	COG0280	phosphate acetyltransferase
OCUBac02_RS17505	COG0281	malic enzyme
OCUBac02_RS17515	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
OCUBac02_RS17520	COG0402	S-adenosylhomocysteine deaminase activity
OCUBac02_RS17530	COG1529	Aldehyde oxidase and xanthine dehydrogenase
OCUBac02_RS17535	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
OCUBac02_RS17535	COG3608	succinylglutamate desuccinylase aspartoacylase
OCUBac02_RS17580	COG0633	Ferredoxin
OCUBac02_RS17595	COG3218	ABC-type transport auxiliary lipoprotein component
OCUBac02_RS17595	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
OCUBac02_RS17605	COG1127	ABC transporter
OCUBac02_RS17610	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
OCUBac02_RS17620	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
OCUBac02_RS17650	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
OCUBac02_RS17655	COG0318	PFAM AMP-dependent synthetase and ligase
OCUBac02_RS17665	COG3395	kinase activity
OCUBac02_RS17675	COG0601	transmembrane transport
OCUBac02_RS17715	COG3964	amidohydrolase
OCUBac02_RS17725	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS17730	COG0601	transmembrane transport
OCUBac02_RS17735	COG0747	negative chemotaxis
OCUBac02_RS17750	COG0534	Mate efflux family protein
OCUBac02_RS17755	COG0840	transmembrane signaling receptor activity
OCUBac02_RS17760	COG1376	ErfK ybiS ycfS ynhG family protein
OCUBac02_RS17765	COG3416	Protein conserved in bacteria
OCUBac02_RS17775	COG1376	ErfK ybiS ycfS ynhG family protein
OCUBac02_RS17805	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
OCUBac02_RS17810	COG0459	protein refolding
OCUBac02_RS17820	COG4178	(ABC) transporter
OCUBac02_RS17835	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
OCUBac02_RS17845	COG0124	histidyl-tRNA synthetase
OCUBac02_RS17850	COG0247	lactate metabolic process
OCUBac02_RS17865	COG0277	FAD linked oxidase domain protein
OCUBac02_RS17875	COG0277	FAD linked oxidase domain protein
OCUBac02_RS17880	COG0583	DNA-binding transcription factor activity
OCUBac02_RS17890	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
OCUBac02_RS17900	COG0436	Aminotransferase
OCUBac02_RS17905	COG1970	mechanosensitive ion channel activity
OCUBac02_RS17910	COG2205	protein histidine kinase activity
OCUBac02_RS17925	COG1522	sequence-specific DNA binding
OCUBac02_RS17930	COG1722	exodeoxyribonuclease VII activity
OCUBac02_RS17935	COG1741	Belongs to the pirin family
OCUBac02_RS17950	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
OCUBac02_RS17960	COG2135	peptidase activity
OCUBac02_RS17970	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
OCUBac02_RS17975	COG1116	anion transmembrane transporter activity
OCUBac02_RS17990	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
OCUBac02_RS18000	COG0598	Magnesium transport protein CorA
OCUBac02_RS18005	COG0471	metal ion transport
OCUBac02_RS18005	COG3273	potassium ion transport
OCUBac02_RS18010	COG0598	Magnesium transport protein CorA
OCUBac02_RS18015	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS18020	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS18025	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS18030	COG0009	L-threonylcarbamoyladenylate synthase
OCUBac02_RS18035	COG0583	DNA-binding transcription factor activity
OCUBac02_RS18040	COG0604	alcohol dehydrogenase
OCUBac02_RS18065	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
OCUBac02_RS18070	COG0513	Belongs to the DEAD box helicase family
OCUBac02_RS18075	COG1278	Cold shock
OCUBac02_RS18085	COG0574	Belongs to the PEP-utilizing enzyme family
OCUBac02_RS18085	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
OCUBac02_RS18090	COG2983	Belongs to the UPF0260 family
OCUBac02_RS18095	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
OCUBac02_RS18135	COG2205	protein histidine kinase activity
OCUBac02_RS18145	COG2166	iron-sulfur cluster assembly
OCUBac02_RS18160	COG4957	zinc ion binding
OCUBac02_RS18175	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
OCUBac02_RS18185	COG3394	polysaccharide catabolic process
OCUBac02_RS18190	COG0463	Glycosyl transferase, family 2
OCUBac02_RS18195	COG0728	peptidoglycan biosynthetic process
OCUBac02_RS18200	COG2070	2-Nitropropane dioxygenase
OCUBac02_RS18205	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
OCUBac02_RS18220	COG0736	holo-[acyl-carrier-protein] synthase activity
OCUBac02_RS18225	COG0861	Integral membrane protein TerC family
OCUBac02_RS18230	COG0861	Integral membrane protein TerC family
OCUBac02_RS18235	COG0473	3-isopropylmalate dehydrogenase activity
OCUBac02_RS18240	COG0596	Alpha beta hydrolase
OCUBac02_RS18245	COG0072	phenylalanine-tRNA ligase activity
OCUBac02_RS18245	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
OCUBac02_RS18255	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
OCUBac02_RS18260	COG1611	Belongs to the LOG family
OCUBac02_RS18265	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
OCUBac02_RS18270	COG0291	Belongs to the bacterial ribosomal protein bL35 family
OCUBac02_RS18280	COG1309	transcriptional regulator
OCUBac02_RS18285	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
OCUBac02_RS18325	COG2205	protein histidine kinase activity
OCUBac02_RS18330	COG2239	Acts as a magnesium transporter
OCUBac02_RS18335	COG0625	glutathione transferase activity
OCUBac02_RS18370	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
OCUBac02_RS18390	COG0751	glycine-tRNA ligase activity
OCUBac02_RS18395	COG0752	glycyl-tRNA synthetase alpha subunit
OCUBac02_RS18425	COG0142	geranyltranstransferase activity
OCUBac02_RS18430	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
OCUBac02_RS18445	COG1573	uracil-dna glycosylase
OCUBac02_RS18450	COG2321	neutral zinc metallopeptidase
OCUBac02_RS18465	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
OCUBac02_RS18470	COG2189	Belongs to the N(4) N(6)-methyltransferase family
OCUBac02_RS18480	COG1194	a g-specific adenine glycosylase
OCUBac02_RS18485	COG4232	protein-disulfide reductase activity
OCUBac02_RS18505	COG1196	nuclear chromosome segregation
OCUBac02_RS18515	COG0356	it plays a direct role in the translocation of protons across the membrane
OCUBac02_RS18520	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
OCUBac02_RS18525	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
OCUBac02_RS18530	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
OCUBac02_RS18540	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
OCUBac02_RS18545	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
OCUBac02_RS18550	COG0509	glycine decarboxylation via glycine cleavage system
OCUBac02_RS18555	COG0404	The glycine cleavage system catalyzes the degradation of glycine
OCUBac02_RS18570	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
OCUBac02_RS18575	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
OCUBac02_RS18580	COG0109	protoheme IX farnesyltransferase activity
OCUBac02_RS18590	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
OCUBac02_RS18605	COG3346	SURF1 family
OCUBac02_RS18615	COG0612	Peptidase, M16
OCUBac02_RS18630	COG1678	Uncharacterized ACR, COG1678
OCUBac02_RS18640	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
OCUBac02_RS18640	COG0678	peroxiredoxin activity
OCUBac02_RS18660	COG0328	RNA-DNA hybrid ribonuclease activity
OCUBac02_RS18665	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
OCUBac02_RS18670	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
OCUBac02_RS18675	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
OCUBac02_RS18675	COG0475	glutathione-regulated potassium exporter activity
OCUBac02_RS18695	COG0583	DNA-binding transcription factor activity
OCUBac02_RS18720	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
OCUBac02_RS18730	COG0483	inositol monophosphate 1-phosphatase activity
OCUBac02_RS18745	COG1519	Transferase
OCUBac02_RS18750	COG1663	tetraacyldisaccharide 4'-kinase activity
OCUBac02_RS18765	COG1570	exodeoxyribonuclease VII activity
OCUBac02_RS18770	COG0151	Belongs to the GarS family
OCUBac02_RS18775	COG0596	Alpha beta hydrolase
OCUBac02_RS18785	COG0640	Transcriptional regulator
OCUBac02_RS18800	COG0590	tRNA wobble adenosine to inosine editing
OCUBac02_RS18805	COG1187	pseudouridine synthase activity
OCUBac02_RS18810	COG0742	ribosomal rna small subunit methyltransferase
OCUBac02_RS18820	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
OCUBac02_RS18825	COG0166	Belongs to the GPI family
OCUBac02_RS18830	COG0612	Peptidase, M16
OCUBac02_RS18835	COG0612	Peptidase, M16
OCUBac02_RS18845	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
OCUBac02_RS18850	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
OCUBac02_RS18855	COG0196	riboflavin kinase activity
OCUBac02_RS18860	COG2030	dehydratase
OCUBac02_RS18865	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS18890	COG0242	peptide deformylase activity
OCUBac02_RS18895	COG1024	Enoyl-CoA hydratase
OCUBac02_RS18895	COG1250	3-hydroxyacyl-CoA dehydrogenase
OCUBac02_RS18900	COG0183	Belongs to the thiolase family
OCUBac02_RS18905	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS18920	COG0730	response to heat
OCUBac02_RS18930	COG0303	'Molybdopterin
OCUBac02_RS18940	COG0489	protein tyrosine kinase activity
OCUBac02_RS18950	COG0746	molybdenum cofactor guanylyltransferase activity
OCUBac02_RS18955	COG1618	nucleotide phosphatase activity, acting on free nucleotides
OCUBac02_RS18955	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
OCUBac02_RS18965	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
OCUBac02_RS18975	COG1473	amidohydrolase
OCUBac02_RS18980	COG0579	oxidoreductase
OCUBac02_RS18985	COG0800	Aldolase
OCUBac02_RS18995	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
OCUBac02_RS19000	COG4608	Belongs to the ABC transporter superfamily
OCUBac02_RS19015	COG0601	transmembrane transport
OCUBac02_RS19020	COG0747	negative chemotaxis
OCUBac02_RS19030	COG2307	Protein conserved in bacteria
OCUBac02_RS19030	COG2308	Evidence 4 Homologs of previously reported genes of
OCUBac02_RS19040	COG1733	regulation of RNA biosynthetic process
OCUBac02_RS19055	COG1012	belongs to the aldehyde dehydrogenase family
OCUBac02_RS19070	COG0671	phosphoesterase, PA-phosphatase related
OCUBac02_RS19075	COG1597	lipid kinase activity
OCUBac02_RS19095	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
OCUBac02_RS19105	COG1228	amidohydrolase
OCUBac02_RS19110	COG2986	histidine ammonia-lyase
OCUBac02_RS19120	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
OCUBac02_RS19130	COG0372	Belongs to the citrate synthase family
OCUBac02_RS19135	COG0372	Belongs to the citrate synthase family
OCUBac02_RS19140	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
OCUBac02_RS19150	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
OCUBac02_RS19165	COG0028	Belongs to the TPP enzyme family
OCUBac02_RS19180	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS19215	COG0747	negative chemotaxis
OCUBac02_RS19220	COG1228	amidohydrolase
OCUBac02_RS19240	COG0181	hydroxymethylbilane synthase activity
OCUBac02_RS19245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
OCUBac02_RS19250	COG0697	spore germination
OCUBac02_RS19255	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
OCUBac02_RS19260	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
OCUBac02_RS19265	COG0830	nickel cation binding
OCUBac02_RS19270	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
OCUBac02_RS19275	COG0804	urea catabolic process
OCUBac02_RS19280	COG0832	Belongs to the urease beta subunit family
OCUBac02_RS19290	COG0831	urea catabolic process
OCUBac02_RS19295	COG0829	nickel cation binding
OCUBac02_RS19315	COG0559	Belongs to the binding-protein-dependent transport system permease family
OCUBac02_RS19330	COG0287	Prephenate dehydrogenase
OCUBac02_RS19335	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
OCUBac02_RS19345	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
OCUBac02_RS19350	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
OCUBac02_RS19350	COG2813	Specifically methylates the guanine in position
OCUBac02_RS19360	COG0542	response to heat
OCUBac02_RS19380	COG2890	protein-(glutamine-N5) methyltransferase activity
OCUBac02_RS19385	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
OCUBac02_RS19390	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
OCUBac02_RS19395	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
OCUBac02_RS19400	COG1877	trehalose-phosphatase activity
OCUBac02_RS19405	COG3387	PFAM Glycoside hydrolase 15-related
OCUBac02_RS19460	COG0583	DNA-binding transcription factor activity
OCUBac02_RS19470	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS19475	COG1804	L-carnitine dehydratase bile acid-inducible protein F
OCUBac02_RS19480	COG0028	Belongs to the TPP enzyme family
OCUBac02_RS19495	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS19500	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
OCUBac02_RS19505	COG0395	ABC-type sugar transport system, permease component
OCUBac02_RS19510	COG1175	transmembrane transport
OCUBac02_RS19520	COG1840	ABC-type Fe3 transport system, periplasmic component
OCUBac02_RS19530	COG3706	GGDEF domain
OCUBac02_RS19550	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS19560	COG2816	NAD+ diphosphatase activity
OCUBac02_RS19575	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
OCUBac02_RS19580	COG3474	cytochrome
OCUBac02_RS19585	COG4166	transmembrane transport
OCUBac02_RS19590	COG4174	ABC transporter (Permease)
OCUBac02_RS19595	COG4239	(ABC) transporter, permease
OCUBac02_RS19600	COG4172	Belongs to the ABC transporter superfamily
OCUBac02_RS19605	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
OCUBac02_RS19635	COG5328	Belongs to the UPF0262 family
OCUBac02_RS19640	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
OCUBac02_RS19650	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
OCUBac02_RS19660	COG5001	Diguanylate cyclase
OCUBac02_RS19660	COG3300	MHYT domain
OCUBac02_RS19670	COG5000	phosphorelay sensor kinase activity
OCUBac02_RS19700	COG1793	dna ligase
OCUBac02_RS19705	COG2755	lipolytic protein G-D-S-L family
OCUBac02_RS19715	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
OCUBac02_RS19720	COG1201	RNA secondary structure unwinding
OCUBac02_RS19735	COG0251	oxidation-reduction process
OCUBac02_RS19745	COG0697	spore germination
OCUBac02_RS19750	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
OCUBac02_RS19755	COG4172	Belongs to the ABC transporter superfamily
OCUBac02_RS19760	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS19805	COG0284	orotidine-5'-phosphate decarboxylase activity
OCUBac02_RS19820	COG1509	lysine 2,3-aminomutase activity
OCUBac02_RS19830	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
OCUBac02_RS19845	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
OCUBac02_RS19860	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCUBac02_RS19865	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
OCUBac02_RS19870	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
OCUBac02_RS19875	COG1137	ATPase activity
OCUBac02_RS19890	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
OCUBac02_RS19900	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
OCUBac02_RS19910	COG0101	tRNA pseudouridine synthase activity
OCUBac02_RS19915	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
OCUBac02_RS19920	COG0242	peptide deformylase activity
OCUBac02_RS19930	COG0840	transmembrane signaling receptor activity
OCUBac02_RS19950	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
OCUBac02_RS19960	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
OCUBac02_RS19965	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
OCUBac02_RS19980	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
OCUBac02_RS20000	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
OCUBac02_RS20015	COG2423	ornithine cyclodeaminase activity
OCUBac02_RS20025	COG0776	regulation of translation
OCUBac02_RS20030	COG0616	signal peptide processing
OCUBac02_RS20035	COG0443	Heat shock 70 kDa protein
OCUBac02_RS20040	COG0539	negative regulation of cytoplasmic translation
OCUBac02_RS20050	COG1704	LemA family
OCUBac02_RS20055	COG0501	Belongs to the peptidase M48B family
OCUBac02_RS20070	COG0137	argininosuccinate synthase activity
OCUBac02_RS20075	COG2827	Endonuclease containing a URI domain
OCUBac02_RS20090	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
OCUBac02_RS20105	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
OCUBac02_RS20110	COG0735	belongs to the Fur family
OCUBac02_RS20150	COG0328	RNA-DNA hybrid ribonuclease activity
OCUBac02_RS20185	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
OCUBac02_RS20190	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
OCUBac02_RS20200	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
OCUBac02_RS20280	COG0165	Argininosuccinate lyase
OCUBac02_RS20285	COG0765	amino acid transport
OCUBac02_RS20295	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCUBac02_RS20325	COG3842	ATPase activity
OCUBac02_RS20330	COG1176	ABC-type spermidine putrescine transport system, permease component I
OCUBac02_RS20335	COG1177	transmembrane transport
OCUBac02_RS20345	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS20355	COG0154	amidase activity
OCUBac02_RS20365	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
OCUBac02_RS20385	COG0154	amidase activity
OCUBac02_RS20390	COG0686	Belongs to the AlaDH PNT family
OCUBac02_RS20430	COG0297	glycogen (starch) synthase activity
OCUBac02_RS20480	COG1132	(ABC) transporter
OCUBac02_RS20485	COG4585	Histidine kinase
OCUBac02_RS20510	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
OCUBac02_RS20520	COG0662	Cupin 2, conserved barrel domain protein
OCUBac02_RS20520	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
OCUBac02_RS20540	COG0765	amino acid transport
OCUBac02_RS20545	COG0765	amino acid transport
OCUBac02_RS20550	COG1126	abc transporter atp-binding protein
OCUBac02_RS20560	COG0583	DNA-binding transcription factor activity
OCUBac02_RS20570	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
OCUBac02_RS20580	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
OCUBac02_RS20590	COG0277	FAD linked oxidase domain protein
OCUBac02_RS20595	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
OCUBac02_RS20600	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS20610	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
OCUBac02_RS20625	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
OCUBac02_RS20635	COG0183	Belongs to the thiolase family
OCUBac02_RS20640	COG1088	dTDP-glucose 4,6-dehydratase activity
OCUBac02_RS20645	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
OCUBac02_RS20650	COG1091	dTDP-4-dehydrorhamnose reductase activity
OCUBac02_RS20655	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
OCUBac02_RS20675	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
OCUBac02_RS20685	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS20700	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
OCUBac02_RS20715	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
OCUBac02_RS20720	COG0583	DNA-binding transcription factor activity
OCUBac02_RS20745	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
OCUBac02_RS20755	COG0840	transmembrane signaling receptor activity
OCUBac02_RS20760	COG0318	PFAM AMP-dependent synthetase and ligase
OCUBac02_RS20770	COG0154	amidase activity
OCUBac02_RS20775	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
OCUBac02_RS20785	COG1376	ErfK ybiS ycfS ynhG family protein
OCUBac02_RS20790	COG0123	including yeast histone deacetylase and acetoin utilization protein
OCUBac02_RS20795	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
OCUBac02_RS20795	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
OCUBac02_RS20800	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
OCUBac02_RS20805	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
OCUBac02_RS20810	COG0406	alpha-ribazole phosphatase activity
OCUBac02_RS20815	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
OCUBac02_RS20820	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
OCUBac02_RS20830	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
OCUBac02_RS20835	COG0484	heat shock protein binding
OCUBac02_RS20845	COG0259	pyridoxamine-phosphate oxidase activity
OCUBac02_RS20850	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS20855	COG0494	nUDIX hydrolase
OCUBac02_RS20875	COG0405	Gamma-glutamyltransferase
OCUBac02_RS20880	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
OCUBac02_RS20890	COG2423	ornithine cyclodeaminase activity
OCUBac02_RS20905	COG1522	sequence-specific DNA binding
OCUBac02_RS20945	COG0583	DNA-binding transcription factor activity
OCUBac02_RS20950	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
OCUBac02_RS20960	COG3383	formate dehydrogenase (NAD+) activity
OCUBac02_RS20965	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
OCUBac02_RS20975	COG2223	nitrite transmembrane transporter activity
OCUBac02_RS20985	COG1764	response to oxidative stress
OCUBac02_RS20990	COG4608	Belongs to the ABC transporter superfamily
OCUBac02_RS20995	COG0444	Belongs to the ABC transporter superfamily
OCUBac02_RS21000	COG0402	S-adenosylhomocysteine deaminase activity
OCUBac02_RS21005	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS21020	COG1802	Transcriptional regulator
OCUBac02_RS21025	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
OCUBac02_RS21030	COG2267	carboxylic ester hydrolase activity
OCUBac02_RS21080	COG0556	nucleotide-excision repair
OCUBac02_RS21110	COG3842	ATPase activity
OCUBac02_RS21120	COG1840	ABC-type Fe3 transport system, periplasmic component
OCUBac02_RS21125	COG0483	inositol monophosphate 1-phosphatase activity
OCUBac02_RS21130	COG0673	inositol 2-dehydrogenase activity
OCUBac02_RS21145	COG0601	transmembrane transport
OCUBac02_RS21150	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS21165	COG2855	membrane
OCUBac02_RS21195	COG0438	transferase activity, transferring glycosyl groups
OCUBac02_RS21220	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
OCUBac02_RS21230	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
OCUBac02_RS21235	COG0367	asparagine synthase
OCUBac02_RS21240	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
OCUBac02_RS21240	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
OCUBac02_RS21265	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
OCUBac02_RS21280	COG1088	dTDP-glucose 4,6-dehydratase activity
OCUBac02_RS21285	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
OCUBac02_RS21290	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
OCUBac02_RS21300	COG0367	asparagine synthase
OCUBac02_RS21345	COG1960	acyl-CoA dehydrogenase activity
OCUBac02_RS21355	COG1285	pathogenesis
OCUBac02_RS21415	COG2099	Precorrin-6x reductase
OCUBac02_RS21430	COG2875	Belongs to the precorrin methyltransferase family
OCUBac02_RS21435	COG1797	cobyrinic acid a,c-diamide synthase activity
OCUBac02_RS21440	COG0778	Nitroreductase
OCUBac02_RS21480	COG4214	carbohydrate transport
OCUBac02_RS21500	COG2171	N-acyltransferase activity
OCUBac02_RS21525	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCUBac02_RS21535	COG0747	negative chemotaxis
OCUBac02_RS21545	COG1473	amidohydrolase
OCUBac02_RS21575	COG2814	Major facilitator Superfamily
OCUBac02_RS21580	COG0583	DNA-binding transcription factor activity
OCUBac02_RS21590	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
OCUBac02_RS21595	COG3608	succinylglutamate desuccinylase aspartoacylase
OCUBac02_RS21605	COG1126	abc transporter atp-binding protein
OCUBac02_RS21615	COG0765	amino acid transport
OCUBac02_RS21645	COG0747	negative chemotaxis
OCUBac02_RS21650	COG0601	transmembrane transport
OCUBac02_RS21655	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS21665	COG0850	regulation of cytokinetic process
OCUBac02_RS21670	COG2894	cell division
OCUBac02_RS21705	COG0402	S-adenosylhomocysteine deaminase activity
OCUBac02_RS21725	COG0765	amino acid transport
OCUBac02_RS21730	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCUBac02_RS21755	COG1176	ABC-type spermidine putrescine transport system, permease component I
OCUBac02_RS21770	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCUBac02_RS21775	COG1012	belongs to the aldehyde dehydrogenase family
OCUBac02_RS21780	COG4948	Mandelate Racemase Muconate Lactonizing
OCUBac02_RS21790	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
OCUBac02_RS21795	COG0174	glutamine synthetase
OCUBac02_RS21800	COG1012	belongs to the aldehyde dehydrogenase family
OCUBac02_RS21820	COG4589	Belongs to the CDS family
OCUBac02_RS21835	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
OCUBac02_RS21850	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS21855	COG1473	amidohydrolase
OCUBac02_RS21890	COG2072	flavoprotein involved in K transport
OCUBac02_RS21895	COG0601	transmembrane transport
OCUBac02_RS21905	COG0444	Belongs to the ABC transporter superfamily
OCUBac02_RS21910	COG4608	Belongs to the ABC transporter superfamily
OCUBac02_RS21915	COG0747	negative chemotaxis
OCUBac02_RS21925	COG3842	ATPase activity
OCUBac02_RS21930	COG1653	transport
OCUBac02_RS21940	COG0395	ABC-type sugar transport system, permease component
OCUBac02_RS21950	COG0483	inositol monophosphate 1-phosphatase activity
OCUBac02_RS21955	COG1674	ftsk spoiiie
OCUBac02_RS21965	COG2217	Heavy metal translocating P-type atpase
OCUBac02_RS21980	COG2010	Cytochrome c
OCUBac02_RS21995	COG3278	Belongs to the heme-copper respiratory oxidase family
OCUBac02_RS22000	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
OCUBac02_RS22010	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
OCUBac02_RS22035	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
OCUBac02_RS22040	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
OCUBac02_RS22045	COG1802	Transcriptional regulator
OCUBac02_RS22050	COG0747	negative chemotaxis
OCUBac02_RS22055	COG0747	negative chemotaxis
OCUBac02_RS22060	COG2362	D-Aminopeptidase
OCUBac02_RS22065	COG0601	transmembrane transport
OCUBac02_RS22070	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS22075	COG0444	Belongs to the ABC transporter superfamily
OCUBac02_RS22080	COG4608	Belongs to the ABC transporter superfamily
OCUBac02_RS22100	COG0747	negative chemotaxis
OCUBac02_RS22105	COG0444	Belongs to the ABC transporter superfamily
OCUBac02_RS22110	COG4608	Belongs to the ABC transporter superfamily
OCUBac02_RS22120	COG0601	transmembrane transport
OCUBac02_RS22125	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS22140	COG2942	2-epimerase
OCUBac02_RS22175	COG1129	ABC transporter
OCUBac02_RS22200	COG1376	ErfK ybiS ycfS ynhG family protein
OCUBac02_RS22205	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCUBac02_RS22210	COG4336	lyase activity
OCUBac02_RS22225	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
OCUBac02_RS22275	COG2010	Cytochrome c
OCUBac02_RS22295	COG3005	denitrification pathway
OCUBac02_RS22300	COG3043	anaerobic respiration
OCUBac02_RS22305	COG0243	molybdopterin cofactor binding
OCUBac02_RS22310	COG3062	negative regulation of establishment of protein localization
OCUBac02_RS22320	COG4459	periplasmic nitrate reductase
OCUBac02_RS22335	COG3256	nitric oxide reductase
OCUBac02_RS22340	COG0714	Associated with various cellular activities
OCUBac02_RS22370	COG2151	metal-sulfur cluster biosynthetic enzyme
OCUBac02_RS22410	COG1959	2 iron, 2 sulfur cluster binding
OCUBac02_RS22430	COG1116	anion transmembrane transporter activity
OCUBac02_RS22460	COG0826	peptidase U32
OCUBac02_RS22470	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
OCUBac02_RS22485	COG0635	Involved in the biosynthesis of porphyrin-containing compound
OCUBac02_RS22500	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
OCUBac02_RS22535	COG3181	Tripartite tricarboxylate transporter family receptor
OCUBac02_RS22555	COG0559	Belongs to the binding-protein-dependent transport system permease family
OCUBac02_RS22570	COG2050	protein possibly involved in aromatic compounds catabolism
OCUBac02_RS22575	COG1024	Enoyl-CoA hydratase
OCUBac02_RS22630	COG1309	transcriptional regulator
OCUBac02_RS22635	COG0318	PFAM AMP-dependent synthetase and ligase
OCUBac02_RS22670	COG4214	carbohydrate transport
OCUBac02_RS22675	COG2086	electron transfer activity
OCUBac02_RS22680	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
OCUBac02_RS22735	COG4974	Belongs to the 'phage' integrase family
OCUBac02_RS22740	COG0517	IMP dehydrogenase activity
OCUBac02_RS22765	COG1764	response to oxidative stress
OCUBac02_RS22770	COG0596	Alpha beta hydrolase
OCUBac02_RS22800	COG5001	Diguanylate cyclase
OCUBac02_RS22810	COG2831	hemolysin activation secretion protein
OCUBac02_RS22850	COG0583	DNA-binding transcription factor activity
OCUBac02_RS22855	COG0129	dihydroxy-acid dehydratase activity
OCUBac02_RS22875	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
OCUBac02_RS22880	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
OCUBac02_RS22900	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
OCUBac02_RS22905	COG0606	chelatase, subunit chli
OCUBac02_RS22910	COG0784	Response regulator, receiver
OCUBac02_RS22910	COG5002	protein histidine kinase activity
OCUBac02_RS22910	COG2205	protein histidine kinase activity
OCUBac02_RS22925	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
OCUBac02_RS22935	COG1968	undecaprenyl-diphosphatase activity
OCUBac02_RS22940	COG2814	Major facilitator Superfamily
OCUBac02_RS22950	COG1011	Hydrolase
OCUBac02_RS22960	COG1177	transmembrane transport
OCUBac02_RS22975	COG3842	ATPase activity
OCUBac02_RS22990	COG1522	sequence-specific DNA binding
OCUBac02_RS23005	COG2814	Major facilitator Superfamily
OCUBac02_RS23010	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
OCUBac02_RS23015	COG2259	Doxx family
OCUBac02_RS23030	COG1074	ATP-dependent DNA helicase activity
OCUBac02_RS23035	COG2887	Belongs to the helicase family. UvrD subfamily
OCUBac02_RS23040	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
OCUBac02_RS23045	COG3178	'Phosphotransferase
OCUBac02_RS23050	COG2205	protein histidine kinase activity
OCUBac02_RS23055	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
OCUBac02_RS23060	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCUBac02_RS23065	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCUBac02_RS23075	COG0642	Histidine kinase
OCUBac02_RS23080	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS23090	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
OCUBac02_RS23105	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
OCUBac02_RS23125	COG1012	belongs to the aldehyde dehydrogenase family
OCUBac02_RS23155	COG0673	inositol 2-dehydrogenase activity
OCUBac02_RS23180	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
OCUBac02_RS23185	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
OCUBac02_RS23195	COG1643	Atp-dependent helicase
OCUBac02_RS23200	COG0159	tryptophan synthase activity
OCUBac02_RS23205	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
OCUBac02_RS23210	COG0285	dihydrofolate synthase activity
OCUBac02_RS23215	COG0656	L-ascorbic acid biosynthetic process
OCUBac02_RS23230	COG3734	2-keto-3-deoxy-galactonokinase
OCUBac02_RS23235	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCUBac02_RS23275	COG4964	Belongs to the GSP D family
OCUBac02_RS23310	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
OCUBac02_RS23325	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
OCUBac02_RS23330	COG0840	transmembrane signaling receptor activity
OCUBac02_RS23335	COG0280	phosphate acetyltransferase
OCUBac02_RS23335	COG0281	malic enzyme
OCUBac02_RS23345	COG4178	(ABC) transporter
OCUBac02_RS23355	COG0392	lysyltransferase activity
OCUBac02_RS23375	COG1278	Cold shock
OCUBac02_RS23410	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
OCUBac02_RS23415	COG2011	ABC-type metal ion transport system permease component
OCUBac02_RS23440	COG3237	CsbD-like
OCUBac02_RS23445	COG0484	heat shock protein binding
OCUBac02_RS23450	COG0443	Heat shock 70 kDa protein
OCUBac02_RS23460	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
OCUBac02_RS23465	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
OCUBac02_RS23510	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCUBac02_RS23515	COG0601	transmembrane transport
OCUBac02_RS23520	COG1402	creatininase
OCUBac02_RS23535	COG1446	asparaginase
OCUBac02_RS23545	COG1028	Short-chain dehydrogenase reductase Sdr
OCUBac02_RS23565	COG0640	Transcriptional regulator
OCUBac02_RS23570	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
OCUBac02_RS23575	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
OCUBac02_RS23580	COG2226	methyltransferase
OCUBac02_RS23585	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
OCUBac02_RS23595	COG1024	Enoyl-CoA hydratase
OCUBac02_RS23605	COG0268	Binds directly to 16S ribosomal RNA
OCUBac02_RS23695	COG1278	Cold shock
OCUBac02_RS23705	COG0270	DNA (cytosine-5-)-methyltransferase activity
OCUBac02_RS23735	COG4974	Belongs to the 'phage' integrase family
OCUBac02_RS23775	COG0358	DNA primase activity
OCUBac02_RS23810	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
OCUBac02_RS23815	COG0776	regulation of translation
OCUBac02_RS23880	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
OCUBac02_RS23930	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
OCUBac02_RS23940	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
OCUBac02_RS24150	COG4957	zinc ion binding
OCUBac02_RS24250	COG2268	Band 7 protein
OCUBac02_RS24285	COG0675	Transposase, IS605 OrfB family
OCUBac02_RS24320	COG3550	peptidyl-serine autophosphorylation
OCUBac02_RS24550	COG1278	Cold shock
OCUBac02_RS24560	COG2188	Transcriptional regulator
OCUBac02_RS24620	COG2813	Specifically methylates the guanine in position
OCUBac02_RS24645	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
OCUBac02_RS24665	COG4650	regulator
OCUBac02_RS24745	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
OCUBac02_RS24755	COG0484	heat shock protein binding
OCUBac02_RS24825	COG0741	lytic transglycosylase activity
OCUBac02_RS24905	COG3550	peptidyl-serine autophosphorylation
OCUBac02_RS24975	COG0756	dUTP diphosphatase activity
OCUBac02_RS25010	COG0750	zinc metalloprotease
OCUBac02_RS25020	COG0194	GDP metabolic process
OCUBac02_RS25025	COG0232	Belongs to the dGTPase family. Type 2 subfamily
OCUBac02_RS25095	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
OCUBac02_RS25105	COG3750	Belongs to the UPF0335 family
OCUBac02_RS25145	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
OCUBac02_RS25145	COG1754	DNA topoisomerase type I activity
OCUBac02_RS25190	COG0745	RESPONSE REGULATOR receiver
OCUBac02_RS25195	COG2205	protein histidine kinase activity
OCUBac02_RS25225	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
OCUBac02_RS25235	COG1002	Type II restriction enzyme, methylase subunits
OCUBac02_RS25240	COG1061	Type III restriction enzyme res subunit
OCUBac02_RS25245	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
OCUBac02_RS25270	COG0492	ferredoxin-NADP+ reductase activity
OCUBac02_RS25290	COG3550	peptidyl-serine autophosphorylation
OCUBac02_RS25380	COG0484	heat shock protein binding
OCUBac02_RS25395	COG2989	Protein conserved in bacteria
OCUBac02_RS25410	COG0514	ATP-dependent DNA helicase (RecQ)
OCUBac02_RS25435	COG2255	four-way junction helicase activity
OCUBac02_RS25465	COG0587	DNA-directed DNA polymerase activity
OCUBac02_RS25545	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
OCUBac02_RS25550	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
OCUBac02_RS25580	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
OCUBac02_RS25660	COG2304	oxidoreductase activity
OCUBac02_RS25725	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
OCUBac02_RS25755	COG1994	Peptidase M50
OCUBac02_RS25765	COG2183	response to ionizing radiation
OCUBac02_RS25860	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
OCUBac02_RS25895	COG0464	growth
OCUBac02_RS25990	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
OCUBac02_RS26125	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
OCUBac02_RS26185	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
OCUBac02_RS26205	COG1250	3-hydroxyacyl-CoA dehydrogenase
OCUBac02_RS26205	COG1024	Enoyl-CoA hydratase
OCUBac02_RS26210	COG0675	Transposase, IS605 OrfB family
OCUBac02_RS26225	COG3831	ATPase activity
OCUBac02_RS26305	COG0776	regulation of translation
OCUBac02_RS26335	COG0180	Tryptophanyl-tRNA synthetase
OCUBac02_RS26355	COG0167	dihydroorotate dehydrogenase activity
OCUBac02_RS26425	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
OCUBac02_RS26435	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
OCUBac02_RS26460	COG1435	thymidine kinase activity
OCUBac02_RS26530	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
OCUBac02_RS26665	COG0741	lytic transglycosylase activity
OCUBac02_RS26685	COG4191	Histidine kinase
OCUBac02_RS26685	COG0784	Response regulator, receiver
OCUBac02_RS26725	COG1337	RAMP superfamily
OCUBac02_RS26760	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
OCUBac02_RS26765	COG1678	Uncharacterized ACR, COG1678
OCUBac02_RS26820	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
OCUBac02_RS26845	COG1024	Enoyl-CoA hydratase
OCUBac02_RS26850	COG3300	MHYT domain
OCUBac02_RS26850	COG5001	Diguanylate cyclase
OCUBac02_RS26930	COG3550	peptidyl-serine autophosphorylation
OCUBac02_RS26960	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
OCUBac02_RS26970	COG1196	nuclear chromosome segregation
OCUBac02_RS26980	COG0717	Belongs to the dCTP deaminase family
OCUBac02_RS26985	COG2189	Belongs to the N(4) N(6)-methyltransferase family
OCUBac02_RS27030	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
OCUBac02_RS27055	COG0563	adenylate kinase activity
OCUBac02_RS27065	COG0563	adenylate kinase activity
OCUBac02_RS27095	COG2885	chlorophyll binding
OCUBac02_RS27150	COG2805	Type II/IV secretion system protein
OCUBac02_RS27165	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
OCUBac02_RS27180	COG0210	DNA helicase