BFL29_RS00005	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
BFL29_RS00010	SM00480	DNA polymerase III beta subunit
BFL29_RS00015	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS00030	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS00080	SM00878	Biotin carboxylase C-terminal domain
BFL29_RS00100	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
BFL29_RS00130	SM00316	Ribosomal protein S1-like RNA-binding domain
BFL29_RS00150	SM00493	BFL29_RS00150
BFL29_RS00160	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS00325	SM00481	DNA polymerase alpha chain like domain
BFL29_RS00405	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS00440	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS00475	SM00448	cheY-homologous receiver domain
BFL29_RS00515	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS00520	SM01068	Putative carbohydrate binding domain
BFL29_RS00565	SM00474	3'-5' exonuclease
BFL29_RS00575	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BFL29_RS00575	SM00474	3'-5' exonuclease
BFL29_RS00575	SM00475	5'-3' exonuclease
BFL29_RS00575	SM00479	BFL29_RS00575
BFL29_RS00575	SM00482	DNA polymerase A domain
BFL29_RS00580	SM00487	DEAD-like helicases superfamily
BFL29_RS00580	SM00490	helicase superfamily c-terminal domain
BFL29_RS00585	SM00387	Histidine kinase-like ATPases
BFL29_RS00585	SM00433	TopoisomeraseII
BFL29_RS00605	SM00829	Enoylreductase
BFL29_RS00615	SM00487	DEAD-like helicases superfamily
BFL29_RS00615	SM00490	helicase superfamily c-terminal domain
BFL29_RS00615	SM00847	Helicase associated domain (HA2)  Add an annotation
BFL29_RS00625	SM00387	Histidine kinase-like ATPases
BFL29_RS00625	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS00640	SM00448	cheY-homologous receiver domain
BFL29_RS00655	SM00932	Scaffold protein Nfu/NifU N terminal
BFL29_RS00675	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BFL29_RS00685	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BFL29_RS00685	SM00534	ATPase domain of DNA mismatch repair MUTS family
BFL29_RS00700	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BFL29_RS00715	SM00411	bacterial (prokaryotic) histone like domain
BFL29_RS00735	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS00770	SM00478	endonuclease III
BFL29_RS00770	SM00525	BFL29_RS00770
BFL29_RS00815	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFL29_RS00855	SM00886	Stress responsive A/B Barrel Domain
BFL29_RS00875	SM01018	B12 binding domain
BFL29_RS00880	SM00421	helix_turn_helix, Lux Regulon
BFL29_RS00910	SM00419	helix_turn_helix, cAMP Regulatory protein
BFL29_RS00915	SM00421	helix_turn_helix, Lux Regulon
BFL29_RS00925	SM00420	helix_turn_helix, Deoxyribose operon repressor
BFL29_RS00925	SM01134	BFL29_RS00925
BFL29_RS00945	SM00829	Enoylreductase
BFL29_RS01015	SM00052	Putative diguanylate phosphodiesterase
BFL29_RS01015	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BFL29_RS01015	SM00091	PAS domain
BFL29_RS01015	SM00267	diguanylate cyclase
BFL29_RS01025	SM00422	helix_turn_helix, mercury resistance
BFL29_RS01035	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS01055	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BFL29_RS01085	SM00346	helix_turn_helix isocitrate lyase regulation
BFL29_RS01105	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS01110	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BFL29_RS01140	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BFL29_RS01175	SM00316	Ribosomal protein S1-like RNA-binding domain
BFL29_RS01180	SM00226	Low molecular weight phosphatase family
BFL29_RS01220	SM01040	BRO family, N-terminal domain
BFL29_RS01225	SM00857	Resolvase, N terminal domain
BFL29_RS01275	SM00988	UreE urease accessory protein, N-terminal domain
BFL29_RS01295	SM00387	Histidine kinase-like ATPases
BFL29_RS01390	SM00062	Bacterial periplasmic substrate-binding proteins
BFL29_RS01405	SM00387	Histidine kinase-like ATPases
BFL29_RS01405	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS01445	SM00342	helix_turn_helix, arabinose operon control protein
BFL29_RS01485	SM00421	helix_turn_helix, Lux Regulon
BFL29_RS01485	SM00448	cheY-homologous receiver domain
BFL29_RS01490	SM00387	Histidine kinase-like ATPases
BFL29_RS01490	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS01490	SM00448	cheY-homologous receiver domain
BFL29_RS01590	SM00421	helix_turn_helix, Lux Regulon
BFL29_RS01590	SM00448	cheY-homologous receiver domain
BFL29_RS01625	SM01092	CO dehydrogenase flavoprotein C-terminal domain
BFL29_RS01630	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BFL29_RS01715	SM00342	helix_turn_helix, arabinose operon control protein
BFL29_RS01800	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFL29_RS01855	SM00028	Tetratricopeptide repeats
BFL29_RS01905	SM00267	diguanylate cyclase
BFL29_RS01910	SM01209	BFL29_RS01910
BFL29_RS01910	SM01210	BFL29_RS01910
BFL29_RS01930	SM00271	DnaJ molecular chaperone homology domain
BFL29_RS01945	SM00357	Cold shock protein domain
BFL29_RS02010	SM00861	Transketolase, pyrimidine binding domain
BFL29_RS02015	SM00363	S4 RNA-binding domain
BFL29_RS02035	SM00257	Lysin motif
BFL29_RS02040	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS02070	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS02075	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS02105	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFL29_RS02110	SM00822	BFL29_RS02110
BFL29_RS02115	SM00823	Phosphopantetheine attachment site
BFL29_RS02120	SM00825	Beta-ketoacyl synthase
BFL29_RS02135	SM00072	Guanylate kinase homologues.
BFL29_RS02220	SM00052	Putative diguanylate phosphodiesterase
BFL29_RS02220	SM00267	diguanylate cyclase
BFL29_RS02245	SM00052	Putative diguanylate phosphodiesterase
BFL29_RS02275	SM00478	endonuclease III
BFL29_RS02275	SM00525	BFL29_RS02275
BFL29_RS02290	SM00968	SMC proteins Flexible Hinge Domain
BFL29_RS02320	SM00849	Metallo-beta-lactamase superfamily
BFL29_RS02395	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS02445	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS02480	SM00354	helix_turn _helix lactose operon repressor
BFL29_RS02485	SM00342	helix_turn_helix, arabinose operon control protein
BFL29_RS02520	SM00966	SpoVT / AbrB like domain 
BFL29_RS02530	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFL29_RS02530	SM00895	BFL29_RS02530
BFL29_RS02590	SM00760	Bacterial dnaA protein helix-turn-helix domain
BFL29_RS02615	SM00387	Histidine kinase-like ATPases
BFL29_RS02615	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS02745	SM00448	cheY-homologous receiver domain
BFL29_RS02745	SM00862	Transcriptional regulatory protein, C terminal
BFL29_RS02750	SM00387	Histidine kinase-like ATPases
BFL29_RS02780	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFL29_RS02785	SM00448	cheY-homologous receiver domain
BFL29_RS02785	SM00862	Transcriptional regulatory protein, C terminal
BFL29_RS02790	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFL29_RS02790	SM00387	Histidine kinase-like ATPases
BFL29_RS02790	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS02805	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BFL29_RS02805	SM00387	Histidine kinase-like ATPases
BFL29_RS02805	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS02825	SM00986	Uracil DNA glycosylase superfamily
BFL29_RS02825	SM00987	UreE urease accessory protein, C-terminal domain 
BFL29_RS02935	SM01130	BFL29_RS02935
BFL29_RS02945	SM00986	Uracil DNA glycosylase superfamily
BFL29_RS02945	SM00987	UreE urease accessory protein, C-terminal domain 
BFL29_RS02955	SM01409	BFL29_RS02955
BFL29_RS02960	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BFL29_RS02960	SM00954	Region found in RelA / SpoT proteins
BFL29_RS02970	SM00100	Cyclic nucleotide-monophosphate binding domain
BFL29_RS02970	SM00419	helix_turn_helix, cAMP Regulatory protein
BFL29_RS02975	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFL29_RS02990	SM00342	helix_turn_helix, arabinose operon control protein
BFL29_RS03010	SM00358	Double-stranded RNA binding motif
BFL29_RS03010	SM00535	Ribonuclease III family
BFL29_RS03085	SM00917	LeuA allosteric (dimerisation) domain
BFL29_RS03100	SM00650	Ribosomal RNA adenine dimethylases
BFL29_RS03145	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS03155	SM00562	BFL29_RS03155
BFL29_RS03180	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BFL29_RS03180	SM00465	GIY-YIG type nucleases (URI domain)
BFL29_RS03220	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BFL29_RS03295	SM00479	BFL29_RS03295
BFL29_RS03310	SM00530	Helix-turn-helix XRE-family like proteins 
BFL29_RS03360	SM00287	Bacterial SH3 domain homologues
BFL29_RS03380	SM00014	Acid phosphatase homologues
BFL29_RS03385	SM00062	Bacterial periplasmic substrate-binding proteins
BFL29_RS03400	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS03425	SM00341	Helicase and RNase D C-terminal
BFL29_RS03425	SM00474	3'-5' exonuclease
BFL29_RS03440	SM00434	DNA Topoisomerase IV
BFL29_RS03455	SM01004	Delta-aminolevulinic acid dehydratase
BFL29_RS03470	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFL29_RS03540	SM00411	bacterial (prokaryotic) histone like domain
BFL29_RS03545	SM00422	helix_turn_helix, mercury resistance
BFL29_RS03590	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BFL29_RS03685	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BFL29_RS03690	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BFL29_RS03735	SM00849	Metallo-beta-lactamase superfamily
BFL29_RS03760	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS03765	SM00481	DNA polymerase alpha chain like domain
BFL29_RS03785	SM00363	S4 RNA-binding domain
BFL29_RS03785	SM01390	BFL29_RS03785
BFL29_RS03830	SM01211	BFL29_RS03830
BFL29_RS03865	SM00998	Adenylosuccinate lyase C-terminus
BFL29_RS03880	SM00829	Enoylreductase
BFL29_RS03885	SM00825	Beta-ketoacyl synthase
BFL29_RS03960	SM00344	helix_turn_helix ASNC type
BFL29_RS03965	SM00986	Uracil DNA glycosylase superfamily
BFL29_RS03965	SM00987	UreE urease accessory protein, C-terminal domain 
BFL29_RS03970	SM00318	Staphylococcal nuclease homologues
BFL29_RS03975	SM00671	Sel1-like repeats.
BFL29_RS03995	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BFL29_RS04000	SM00836	DALR anticodon binding domain
BFL29_RS04000	SM01016	Arginyl tRNA synthetase N terminal dom
BFL29_RS04060	SM00257	Lysin motif
BFL29_RS04070	SM01323	BFL29_RS04070
BFL29_RS04120	SM00845	GatB domain
BFL29_RS04145	SM00878	Biotin carboxylase C-terminal domain
BFL29_RS04190	SM00646	BFL29_RS04190
BFL29_RS04200	SM00937	BFL29_RS04200
BFL29_RS04265	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS04300	SM00487	DEAD-like helicases superfamily
BFL29_RS04300	SM00490	helicase superfamily c-terminal domain
BFL29_RS04370	SM00062	Bacterial periplasmic substrate-binding proteins
BFL29_RS04370	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BFL29_RS04385	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFL29_RS04550	SM00936	Penicillin-binding protein 5, C-terminal domain 
BFL29_RS04575	SM00849	Metallo-beta-lactamase superfamily
BFL29_RS04580	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS04605	SM01230	BFL29_RS04605
BFL29_RS04610	SM00938	Nitrogen regulatory protein P-II
BFL29_RS04670	SM00919	Malic enzyme, NAD binding domain
BFL29_RS04670	SM01274	BFL29_RS04670
BFL29_RS04675	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BFL29_RS04685	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS04725	SM00905	Dihydroneopterin aldolase
BFL29_RS04765	SM00091	PAS domain
BFL29_RS04765	SM00387	Histidine kinase-like ATPases
BFL29_RS04765	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS04765	SM00448	cheY-homologous receiver domain
BFL29_RS04805	SM00852	Probable molybdopterin binding domain
BFL29_RS04825	SM00487	DEAD-like helicases superfamily
BFL29_RS04825	SM00490	helicase superfamily c-terminal domain
BFL29_RS04835	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BFL29_RS04840	SM00450	Rhodanese Homology Domain
BFL29_RS04850	SM00267	diguanylate cyclase
BFL29_RS04880	SM00028	Tetratricopeptide repeats
BFL29_RS04900	SM00903	Flavin reductase like domain
BFL29_RS04915	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BFL29_RS04925	SM01234	BFL29_RS04925
BFL29_RS04980	SM00857	Resolvase, N terminal domain
BFL29_RS04990	SM01040	BRO family, N-terminal domain
BFL29_RS05065	SM00434	DNA Topoisomerase IV
BFL29_RS05075	SM00072	Guanylate kinase homologues.
BFL29_RS05080	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFL29_RS05080	SM00866	BFL29_RS05080
BFL29_RS05095	SM00411	bacterial (prokaryotic) histone like domain
BFL29_RS05100	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS05100	SM00464	Found in ATP-dependent protease La (LON)
BFL29_RS05105	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS05105	SM00994	ClpX C4-type zinc finger
BFL29_RS05105	SM01086	C-terminal, D2-small domain, of ClpB protein
BFL29_RS05135	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS05135	SM00448	cheY-homologous receiver domain
BFL29_RS05140	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFL29_RS05140	SM00387	Histidine kinase-like ATPases
BFL29_RS05140	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS05145	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS05145	SM00448	cheY-homologous receiver domain
BFL29_RS05150	SM00387	Histidine kinase-like ATPases
BFL29_RS05150	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS05170	SM00822	BFL29_RS05170
BFL29_RS05180	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFL29_RS05200	SM00861	Transketolase, pyrimidine binding domain
BFL29_RS05220	SM01192	BFL29_RS05220
BFL29_RS05220	SM01193	BFL29_RS05220
BFL29_RS05270	SM00852	Probable molybdopterin binding domain
BFL29_RS05325	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFL29_RS05390	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS05390	SM01086	C-terminal, D2-small domain, of ClpB protein
BFL29_RS05430	SM00422	helix_turn_helix, mercury resistance
BFL29_RS05465	SM00530	Helix-turn-helix XRE-family like proteins 
BFL29_RS05475	SM00878	Biotin carboxylase C-terminal domain
BFL29_RS05520	SM01329	BFL29_RS05520
BFL29_RS05525	SM00098	Alkaline phosphatase homologues
BFL29_RS05530	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BFL29_RS05535	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS05550	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS05555	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFL29_RS05565	SM00662	RNA polymerases D
BFL29_RS05630	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BFL29_RS05635	SM01374	BFL29_RS05635
BFL29_RS05655	SM00322	K homology RNA-binding domain
BFL29_RS05670	SM01382	BFL29_RS05670
BFL29_RS05670	SM01383	BFL29_RS05670
BFL29_RS05690	SM01403	BFL29_RS05690
BFL29_RS05700	SM00838	Elongation factor G C-terminus
BFL29_RS05700	SM00889	Elongation factor G, domain IV
BFL29_RS05720	SM00663	RNA polymerase I subunit A N-terminus
BFL29_RS05745	SM00649	Ribosomal protein L11/L12
BFL29_RS05750	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BFL29_RS05750	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BFL29_RS05780	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BFL29_RS05785	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFL29_RS05815	SM00971	Serine acetyltransferase, N-terminal
BFL29_RS05830	SM00357	Cold shock protein domain
BFL29_RS05840	SM00978	BFL29_RS05840
BFL29_RS05950	SM00903	Flavin reductase like domain
BFL29_RS06025	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BFL29_RS06070	SM00342	helix_turn_helix, arabinose operon control protein
BFL29_RS06140	SM01091	Transporter associated domain
BFL29_RS06170	SM00822	BFL29_RS06170
BFL29_RS06175	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS06195	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS06220	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS06250	SM00988	UreE urease accessory protein, N-terminal domain
BFL29_RS06295	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS06405	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFL29_RS06415	SM00244	prohibitin homologues
BFL29_RS06535	SM00292	breast cancer carboxy-terminal domain
BFL29_RS06535	SM00532	Ligase N family
BFL29_RS06555	SM00864	Tubulin/FtsZ family, GTPase domain
BFL29_RS06555	SM00865	Tubulin/FtsZ family, C-terminal domain
BFL29_RS06560	SM00842	Cell division protein FtsA
BFL29_RS06645	SM00644	BFL29_RS06645
BFL29_RS06650	SM00271	DnaJ molecular chaperone homology domain
BFL29_RS06660	SM00641	Glycosyl hydrolases family 25
BFL29_RS06680	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFL29_RS06700	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS06825	SM00400	zinc finger
BFL29_RS06825	SM00493	BFL29_RS06825
BFL29_RS06840	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BFL29_RS06855	SM00850	LytTr DNA-binding domain
BFL29_RS06860	SM00851	MGS-like domain
BFL29_RS06860	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BFL29_RS06875	SM00357	Cold shock protein domain
BFL29_RS06915	SM00344	helix_turn_helix ASNC type
BFL29_RS06955	SM00287	Bacterial SH3 domain homologues
BFL29_RS06960	SM00487	DEAD-like helicases superfamily
BFL29_RS06960	SM00490	helicase superfamily c-terminal domain
BFL29_RS06970	SM00357	Cold shock protein domain
BFL29_RS06980	SM00849	Metallo-beta-lactamase superfamily
BFL29_RS07000	SM00448	cheY-homologous receiver domain
BFL29_RS07000	SM00862	Transcriptional regulatory protein, C terminal
BFL29_RS07005	SM00387	Histidine kinase-like ATPases
BFL29_RS07060	SM01400	BFL29_RS07060
BFL29_RS07120	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07125	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07180	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07225	SM00917	LeuA allosteric (dimerisation) domain
BFL29_RS07245	SM00344	helix_turn_helix ASNC type
BFL29_RS07250	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFL29_RS07280	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07285	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07290	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07325	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFL29_RS07370	SM00448	cheY-homologous receiver domain
BFL29_RS07370	SM00862	Transcriptional regulatory protein, C terminal
BFL29_RS07405	SM00091	PAS domain
BFL29_RS07405	SM00387	Histidine kinase-like ATPases
BFL29_RS07405	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS07425	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07435	SM00530	Helix-turn-helix XRE-family like proteins 
BFL29_RS07500	SM01120	BFL29_RS07500
BFL29_RS07510	SM01120	BFL29_RS07510
BFL29_RS07535	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07590	SM00346	helix_turn_helix isocitrate lyase regulation
BFL29_RS07610	SM00507	HNH nucleases
BFL29_RS07615	SM00478	endonuclease III
BFL29_RS07640	SM00363	S4 RNA-binding domain
BFL29_RS07660	SM00911	HWE histidine kinase
BFL29_RS07670	SM00448	cheY-homologous receiver domain
BFL29_RS07685	SM00387	Histidine kinase-like ATPases
BFL29_RS07735	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07750	SM00344	helix_turn_helix ASNC type
BFL29_RS07780	SM00788	Adenylosuccinate synthetase
BFL29_RS07815	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07865	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07870	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BFL29_RS07895	SM00671	Sel1-like repeats.
BFL29_RS07900	SM00841	Elongation factor P, C-terminal
BFL29_RS07900	SM01185	BFL29_RS07900
BFL29_RS07920	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS07980	SM00861	Transketolase, pyrimidine binding domain
BFL29_RS07985	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BFL29_RS08025	SM00829	Enoylreductase
BFL29_RS08050	SM01001	AIR carboxylase
BFL29_RS08065	SM00028	Tetratricopeptide repeats
BFL29_RS08090	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS08100	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
BFL29_RS08115	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS08135	SM01058	CarD-like/TRCF domain
BFL29_RS08145	SM00363	S4 RNA-binding domain
BFL29_RS08150	SM00490	helicase superfamily c-terminal domain
BFL29_RS08195	SM00878	Biotin carboxylase C-terminal domain
BFL29_RS08220	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS08250	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFL29_RS08260	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS08285	SM00487	DEAD-like helicases superfamily
BFL29_RS08285	SM00490	helicase superfamily c-terminal domain
BFL29_RS08345	SM00798	AICARFT/IMPCHase bienzyme
BFL29_RS08345	SM00851	MGS-like domain
BFL29_RS08380	SM00830	Chorismate mutase type II
BFL29_RS08385	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS08385	SM00962	SRP54-type protein, GTPase domain
BFL29_RS08385	SM00963	SRP54-type protein, helical bundle domain
BFL29_RS08395	SM00947	Carbonic anhydrase
BFL29_RS08435	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFL29_RS08435	SM00245	tail specific protease
BFL29_RS08470	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BFL29_RS08515	SM00530	Helix-turn-helix XRE-family like proteins 
BFL29_RS08585	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS08585	SM01086	C-terminal, D2-small domain, of ClpB protein
BFL29_RS08600	SM00937	BFL29_RS08600
BFL29_RS08605	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFL29_RS08710	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFL29_RS08715	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS08715	SM00843	BFL29_RS08715
BFL29_RS08800	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFL29_RS08850	SM00861	Transketolase, pyrimidine binding domain
BFL29_RS08855	SM00881	CoA binding domain
BFL29_RS08885	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFL29_RS08890	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS08890	SM00962	SRP54-type protein, GTPase domain
BFL29_RS08890	SM00963	SRP54-type protein, helical bundle domain
BFL29_RS08900	SM00849	Metallo-beta-lactamase superfamily
BFL29_RS08940	SM00957	SecA DEAD-like domain
BFL29_RS08940	SM00958	SecA preprotein cross-linking domain
BFL29_RS08980	SM00062	Bacterial periplasmic substrate-binding proteins
BFL29_RS08995	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS09010	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS09015	SM00870	BFL29_RS09015
BFL29_RS09020	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFL29_RS09020	SM00895	BFL29_RS09020
BFL29_RS09025	SM00870	BFL29_RS09025
BFL29_RS09055	SM00893	Electron transfer flavoprotein domain
BFL29_RS09060	SM00893	Electron transfer flavoprotein domain
BFL29_RS09175	SM00563	Phosphate acyltransferases
BFL29_RS09190	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS09215	SM00100	Cyclic nucleotide-monophosphate binding domain
BFL29_RS09220	SM00448	cheY-homologous receiver domain
BFL29_RS09220	SM00862	Transcriptional regulatory protein, C terminal
BFL29_RS09245	SM00869	Autotransporter beta-domain
BFL29_RS09265	SM00422	helix_turn_helix, mercury resistance
BFL29_RS09285	SM00327	von Willebrand factor (vWF) type A domain
BFL29_RS09295	SM00271	DnaJ molecular chaperone homology domain
BFL29_RS09305	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFL29_RS09305	SM01091	Transporter associated domain
BFL29_RS09345	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BFL29_RS09410	SM00882	Coenzyme A transferase
BFL29_RS09420	SM00354	helix_turn _helix lactose operon repressor
BFL29_RS09445	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS09455	SM00470	ParB-like nuclease domain
BFL29_RS09470	SM01228	BFL29_RS09470
BFL29_RS09485	SM00357	Cold shock protein domain
BFL29_RS09485	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS09485	SM00959	Rho termination factor, N-terminal domain
BFL29_RS09525	SM00479	BFL29_RS09525
BFL29_RS09540	SM00978	BFL29_RS09540
BFL29_RS09545	SM00925	MltA specific insert domain
BFL29_RS09550	SM00463	Small MutS-related domain
BFL29_RS09555	SM00530	Helix-turn-helix XRE-family like proteins 
BFL29_RS09620	SM00448	cheY-homologous receiver domain
BFL29_RS09620	SM00862	Transcriptional regulatory protein, C terminal
BFL29_RS09625	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFL29_RS09625	SM00387	Histidine kinase-like ATPases
BFL29_RS09625	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS09645	SM00996	S-adenosyl-L-homocysteine hydrolase
BFL29_RS09645	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
BFL29_RS09650	SM00387	Histidine kinase-like ATPases
BFL29_RS09650	SM00388	His Kinase A (phosphoacceptor) domain
BFL29_RS09770	SM00873	B3/4 domain
BFL29_RS09770	SM00874	tRNA synthetase B5 domain
BFL29_RS09770	SM00896	Ferredoxin-fold anticodon binding domain
BFL29_RS09785	SM00271	DnaJ molecular chaperone homology domain
BFL29_RS09790	SM00650	Ribosomal RNA adenine dimethylases
BFL29_RS09795	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BFL29_RS09815	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS09850	SM00382	ATPases associated with a variety of cellular activities
BFL29_RS09860	SM00448	cheY-homologous receiver domain
BFL29_RS09860	SM00862	Transcriptional regulatory protein, C terminal
BFL29_RS09895	SM00563	Phosphate acyltransferases
BFL29_RS09900	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFL29_RS09915	SM01091	Transporter associated domain
BFL29_RS09925	SM00530	Helix-turn-helix XRE-family like proteins 
BFL29_RS09945	SM00316	Ribosomal protein S1-like RNA-binding domain
BFL29_RS09945	SM00322	K homology RNA-binding domain
BFL29_RS09970	SM01387	BFL29_RS09970
BFL29_RS09975	SM00316	Ribosomal protein S1-like RNA-binding domain
BFL29_RS09975	SM00322	K homology RNA-binding domain
BFL29_RS09990	SM00825	Beta-ketoacyl synthase
BFL29_RS10010	SM00287	Bacterial SH3 domain homologues
BFL29_RS10030	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFL29_RS10045	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BFL29_RS10045	SM01232	BFL29_RS10045
BFL29_RS10615	SM01068	Putative carbohydrate binding domain
BFL29_RS10750	SM00433	TopoisomeraseII
BFL29_RS10790	SM00490	helicase superfamily c-terminal domain
BFL29_RS11035	SM01018	B12 binding domain
BFL29_RS12870	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFL29_RS13095	SM00954	Region found in RelA / SpoT proteins
BFL29_RS14075	SM00257	Lysin motif
BFL29_RS14140	SM00845	GatB domain
