locus-tag	class	description
BUMPUSDA_RS00005	COG0445	tRNA wobble uridine modification
BUMPUSDA_RS00010	COG0356	it plays a direct role in the translocation of protons across the membrane
BUMPUSDA_RS00020	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BUMPUSDA_RS00035	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BUMPUSDA_RS00050	COG0187	DNA topoisomerase II activity
BUMPUSDA_RS00055	COG0592	DNA-directed DNA polymerase activity
BUMPUSDA_RS00060	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BUMPUSDA_RS00070	COG0594	ribonuclease P activity
BUMPUSDA_RS00100	COG1509	lysine 2,3-aminomutase activity
BUMPUSDA_RS00110	COG1484	DNA-dependent DNA replication
BUMPUSDA_RS00120	COG0742	ribosomal rna small subunit methyltransferase
BUMPUSDA_RS00125	COG0552	protein localization to endoplasmic reticulum
BUMPUSDA_RS00130	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BUMPUSDA_RS00135	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BUMPUSDA_RS00145	COG0561	phosphatase activity
BUMPUSDA_RS00150	COG0583	DNA-binding transcription factor activity
BUMPUSDA_RS00155	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BUMPUSDA_RS00165	COG0776	regulation of translation
BUMPUSDA_RS00170	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BUMPUSDA_RS00200	COG0250	Participates in transcription elongation, termination and antitermination
BUMPUSDA_RS00205	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BUMPUSDA_RS00230	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BUMPUSDA_RS00235	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BUMPUSDA_RS00250	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BUMPUSDA_RS00260	COG0165	Argininosuccinate lyase
BUMPUSDA_RS00265	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BUMPUSDA_RS00275	COG1045	serine acetyltransferase
BUMPUSDA_RS00280	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BUMPUSDA_RS00285	COG0358	DNA primase activity
BUMPUSDA_RS00305	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
BUMPUSDA_RS00320	COG2190	(PTS) system
BUMPUSDA_RS00325	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BUMPUSDA_RS00330	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BUMPUSDA_RS00335	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BUMPUSDA_RS00355	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BUMPUSDA_RS00365	COG1677	Flagellar hook-basal body complex protein FliE
BUMPUSDA_RS00370	COG1766	The M ring may be actively involved in energy transduction
BUMPUSDA_RS00375	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BUMPUSDA_RS00380	COG1317	bacterial-type flagellum organization
BUMPUSDA_RS00385	COG1157	protein secretion by the type III secretion system
BUMPUSDA_RS00390	COG2882	bacterial-type flagellum organization
BUMPUSDA_RS00395	COG3144	bacterial-type flagellum assembly
BUMPUSDA_RS00400	COG3144	bacterial-type flagellum assembly
BUMPUSDA_RS00410	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BUMPUSDA_RS00415	COG3190	flagellar
BUMPUSDA_RS00415	COG1338	Plays a role in the flagellum-specific transport system
BUMPUSDA_RS00420	COG1987	bacterial-type flagellum assembly
BUMPUSDA_RS00425	COG1684	flagellar biosynthetic protein fliR
BUMPUSDA_RS00430	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BUMPUSDA_RS00440	COG2911	Protein conserved in bacteria
BUMPUSDA_RS00445	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BUMPUSDA_RS00450	COG0312	modulator of DNA gyrase
BUMPUSDA_RS00455	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BUMPUSDA_RS00460	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BUMPUSDA_RS00470	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BUMPUSDA_RS00500	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BUMPUSDA_RS00515	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BUMPUSDA_RS00525	COG0107	imidazoleglycerol-phosphate synthase activity
BUMPUSDA_RS00530	COG0140	phosphoribosyl-ATP diphosphatase activity
BUMPUSDA_RS00530	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BUMPUSDA_RS00535	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
BUMPUSDA_RS00540	COG0717	Belongs to the dCTP deaminase family
BUMPUSDA_RS00550	COG0037	tRNA processing
BUMPUSDA_RS00560	COG0307	riboflavin synthase, alpha
BUMPUSDA_RS00575	COG4656	Part of a membrane complex involved in electron transport
BUMPUSDA_RS00585	COG4659	FMN binding
BUMPUSDA_RS00595	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BUMPUSDA_RS00600	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BUMPUSDA_RS00610	COG0316	Belongs to the HesB IscA family
BUMPUSDA_RS00615	COG0628	permease
BUMPUSDA_RS00620	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BUMPUSDA_RS00625	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BUMPUSDA_RS00635	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BUMPUSDA_RS00645	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BUMPUSDA_RS00650	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BUMPUSDA_RS00650	COG0072	phenylalanine-tRNA ligase activity
BUMPUSDA_RS00655	COG0776	regulation of translation
BUMPUSDA_RS00665	COG0343	queuine tRNA-ribosyltransferase activity
BUMPUSDA_RS00670	COG1862	Preprotein translocase
BUMPUSDA_RS00685	COG0302	gtp cyclohydrolase
BUMPUSDA_RS00700	COG0586	Pfam SNARE associated Golgi protein
BUMPUSDA_RS00705	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BUMPUSDA_RS00710	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BUMPUSDA_RS00715	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BUMPUSDA_RS00720	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BUMPUSDA_RS00725	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BUMPUSDA_RS00730	COG0505	Belongs to the CarA family
BUMPUSDA_RS00755	COG0196	riboflavin kinase activity
BUMPUSDA_RS00765	COG0484	heat shock protein binding
BUMPUSDA_RS00775	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BUMPUSDA_RS00785	COG0649	NAD binding
BUMPUSDA_RS00785	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BUMPUSDA_RS00790	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BUMPUSDA_RS00795	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BUMPUSDA_RS00800	COG1034	ATP synthesis coupled electron transport
BUMPUSDA_RS00805	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BUMPUSDA_RS00810	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BUMPUSDA_RS00815	COG0839	Belongs to the complex I subunit 6 family
BUMPUSDA_RS00825	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BUMPUSDA_RS00830	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BUMPUSDA_RS00835	COG1007	ATP synthesis coupled electron transport
BUMPUSDA_RS00840	COG0861	Integral membrane protein TerC family
BUMPUSDA_RS00845	COG0285	dihydrofolate synthase activity
BUMPUSDA_RS00855	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BUMPUSDA_RS00860	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BUMPUSDA_RS00870	COG2890	protein-(glutamine-N5) methyltransferase activity
BUMPUSDA_RS00875	COG2912	Transglutaminase-like superfamily
BUMPUSDA_RS00885	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BUMPUSDA_RS00890	COG0857	belongs to the CobB CobQ family
BUMPUSDA_RS00890	COG0280	phosphate acetyltransferase
BUMPUSDA_RS00895	COG0633	Ferredoxin
BUMPUSDA_RS00900	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BUMPUSDA_RS00905	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BUMPUSDA_RS00910	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BUMPUSDA_RS00915	COG3416	Protein conserved in bacteria
BUMPUSDA_RS00920	COG0450	alkyl hydroperoxide reductase
BUMPUSDA_RS00930	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BUMPUSDA_RS00940	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BUMPUSDA_RS00945	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BUMPUSDA_RS00950	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BUMPUSDA_RS00955	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BUMPUSDA_RS00965	COG0012	GTP binding
BUMPUSDA_RS00970	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BUMPUSDA_RS00980	COG0527	aspartate kinase activity
BUMPUSDA_RS00980	COG0460	homoserine dehydrogenase
BUMPUSDA_RS00985	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
BUMPUSDA_RS00995	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BUMPUSDA_RS01000	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BUMPUSDA_RS01005	COG0101	tRNA pseudouridine synthase activity
BUMPUSDA_RS01010	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BUMPUSDA_RS01020	COG0494	nUDIX hydrolase
BUMPUSDA_RS01025	COG0237	dephospho-CoA kinase activity
BUMPUSDA_RS01035	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
BUMPUSDA_RS01040	COG0508	dehydrogenase complex catalyzes the overall conversion of
BUMPUSDA_RS01045	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BUMPUSDA_RS01070	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BUMPUSDA_RS01075	COG0849	cell division
BUMPUSDA_RS01080	COG1181	Belongs to the D-alanine--D-alanine ligase family
BUMPUSDA_RS01095	COG0772	Belongs to the SEDS family
BUMPUSDA_RS01105	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BUMPUSDA_RS01110	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BUMPUSDA_RS01115	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BUMPUSDA_RS01120	COG0768	penicillin binding
BUMPUSDA_RS01135	COG0440	acetolactate synthase activity
BUMPUSDA_RS01140	COG0028	Belongs to the TPP enzyme family
BUMPUSDA_RS01150	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BUMPUSDA_RS01155	COG2171	N-acyltransferase activity
BUMPUSDA_RS01160	COG0024	Methionine aminopeptidase
BUMPUSDA_RS01175	COG0528	UMP kinase activity
BUMPUSDA_RS01185	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BUMPUSDA_RS01190	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BUMPUSDA_RS01195	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BUMPUSDA_RS01205	COG0587	DNA-directed DNA polymerase activity
BUMPUSDA_RS01215	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BUMPUSDA_RS01220	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BUMPUSDA_RS01245	COG0328	RNA-DNA hybrid ribonuclease activity
BUMPUSDA_RS01250	COG0328	RNA-DNA hybrid ribonuclease activity
BUMPUSDA_RS01255	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BUMPUSDA_RS01265	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
BUMPUSDA_RS01270	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
BUMPUSDA_RS01275	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BUMPUSDA_RS01290	COG0590	tRNA wobble adenosine to inosine editing
BUMPUSDA_RS01310	COG0681	Belongs to the peptidase S26 family
BUMPUSDA_RS01325	COG0482	sulfurtransferase activity
BUMPUSDA_RS01335	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BUMPUSDA_RS01345	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BUMPUSDA_RS01355	COG2095	MarC family integral membrane protein
BUMPUSDA_RS01360	COG0321	lipoyl(octanoyl) transferase activity
BUMPUSDA_RS01375	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BUMPUSDA_RS01385	COG1607	acyl-coa hydrolase
BUMPUSDA_RS01390	COG2917	probably involved in intracellular septation
BUMPUSDA_RS01410	COG0134	indole-3-glycerol-phosphate synthase activity
BUMPUSDA_RS01410	COG0135	phosphoribosylanthranilate isomerase activity
BUMPUSDA_RS01420	COG0697	spore germination
BUMPUSDA_RS01425	COG1187	pseudouridine synthase activity
BUMPUSDA_RS01430	COG0616	signal peptide processing
BUMPUSDA_RS01435	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BUMPUSDA_RS01435	COG0551	DNA topoisomerase type I activity
BUMPUSDA_RS01440	COG0483	inositol monophosphate 1-phosphatase activity
BUMPUSDA_RS01445	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BUMPUSDA_RS01450	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BUMPUSDA_RS01455	COG0124	histidyl-tRNA synthetase
BUMPUSDA_RS01475	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BUMPUSDA_RS01485	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BUMPUSDA_RS01490	COG4591	ABC-type transport system involved in lipoprotein release permease component
BUMPUSDA_RS01495	COG1136	(ABC) transporter
BUMPUSDA_RS01500	COG4591	ABC-type transport system involved in lipoprotein release permease component
BUMPUSDA_RS01505	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BUMPUSDA_RS01510	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BUMPUSDA_RS01510	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BUMPUSDA_RS01515	COG0716	FMN binding
BUMPUSDA_RS01520	COG0415	Belongs to the DNA photolyase family
BUMPUSDA_RS01525	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BUMPUSDA_RS01530	COG0567	Dehydrogenase, E1 component
BUMPUSDA_RS01535	COG0508	dehydrogenase complex catalyzes the overall conversion of
BUMPUSDA_RS01545	COG0205	6-phosphofructokinase activity
BUMPUSDA_RS01550	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BUMPUSDA_RS01555	COG0149	triose-phosphate isomerase activity
BUMPUSDA_RS01560	COG0776	regulation of translation
BUMPUSDA_RS01565	COG0539	negative regulation of cytoplasmic translation
BUMPUSDA_RS01570	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BUMPUSDA_RS01575	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BUMPUSDA_RS01595	COG0492	ferredoxin-NADP+ reductase activity
BUMPUSDA_RS01600	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BUMPUSDA_RS01610	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BUMPUSDA_RS01615	COG1121	(ABC) transporter
BUMPUSDA_RS01620	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
BUMPUSDA_RS01625	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
BUMPUSDA_RS01630	COG0739	heme binding
BUMPUSDA_RS01635	COG0469	pyruvate kinase activity
BUMPUSDA_RS01640	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BUMPUSDA_RS01645	COG0501	Belongs to the peptidase M48B family
BUMPUSDA_RS01650	COG1253	flavin adenine dinucleotide binding
BUMPUSDA_RS01655	COG1214	PFAM Peptidase M22, glycoprotease
BUMPUSDA_RS01665	COG2894	cell division
BUMPUSDA_RS01675	COG2813	Specifically methylates the guanine in position
BUMPUSDA_RS01690	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BUMPUSDA_RS01690	COG2885	chlorophyll binding
BUMPUSDA_RS01695	COG0728	peptidoglycan biosynthetic process
BUMPUSDA_RS01700	COG0418	dihydroorotase activity
BUMPUSDA_RS01705	COG3418	PFAM FlgN family protein
BUMPUSDA_RS01710	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
BUMPUSDA_RS01715	COG1815	bacterial-type flagellum-dependent cell motility
BUMPUSDA_RS01720	COG1558	bacterial-type flagellum-dependent cell motility
BUMPUSDA_RS01725	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BUMPUSDA_RS01730	COG1749	Flagellar hook protein flgE
BUMPUSDA_RS01735	COG4787	bacterial-type flagellum-dependent cell motility
BUMPUSDA_RS01740	COG4786	Flagellar basal body rod
BUMPUSDA_RS01750	COG1706	bacterial-type flagellum-dependent cell motility
BUMPUSDA_RS01755	COG3951	Flagellar rod assembly protein muramidase FlgJ
BUMPUSDA_RS01760	COG1256	bacterial-type flagellum assembly
BUMPUSDA_RS01765	COG1530	ribonuclease E activity
BUMPUSDA_RS01770	COG0564	pseudouridine synthase activity
BUMPUSDA_RS01770	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BUMPUSDA_RS01780	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BUMPUSDA_RS01785	COG1028	Short-chain dehydrogenase reductase Sdr
BUMPUSDA_RS01795	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BUMPUSDA_RS01800	COG0470	DNA polymerase III
BUMPUSDA_RS01805	COG0084	hydrolase, TatD family'
BUMPUSDA_RS01810	COG1263	PTS System
BUMPUSDA_RS01810	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BUMPUSDA_RS01815	COG0537	adenosine 5'-monophosphoramidase activity
BUMPUSDA_RS01820	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
BUMPUSDA_RS01825	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BUMPUSDA_RS01830	COG0017	Asparaginyl-tRNA synthetase
BUMPUSDA_RS01840	COG0167	dihydroorotate dehydrogenase activity
BUMPUSDA_RS01845	COG0116	Belongs to the methyltransferase superfamily
BUMPUSDA_RS01845	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BUMPUSDA_RS01850	COG0488	(ABC) transporter
BUMPUSDA_RS01860	COG0525	valine-tRNA ligase activity
BUMPUSDA_RS01865	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BUMPUSDA_RS01870	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BUMPUSDA_RS01875	COG0540	Belongs to the ATCase OTCase family
BUMPUSDA_RS01880	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
BUMPUSDA_RS01885	COG0251	oxidation-reduction process
BUMPUSDA_RS01890	COG0513	Belongs to the DEAD box helicase family
BUMPUSDA_RS01905	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BUMPUSDA_RS01920	COG0195	Participates in both transcription termination and antitermination
BUMPUSDA_RS01925	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BUMPUSDA_RS01935	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BUMPUSDA_RS01940	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BUMPUSDA_RS01950	COG5007	Belongs to the BolA IbaG family
BUMPUSDA_RS01985	COG0077	Prephenate dehydratase
BUMPUSDA_RS01985	COG1605	Chorismate mutase
BUMPUSDA_RS01990	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BUMPUSDA_RS01995	COG0228	four-way junction DNA binding
BUMPUSDA_RS02000	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BUMPUSDA_RS02005	COG0336	Belongs to the RNA methyltransferase TrmD family
BUMPUSDA_RS02015	COG0312	modulator of DNA gyrase
BUMPUSDA_RS02030	COG0564	pseudouridine synthase activity
BUMPUSDA_RS02035	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BUMPUSDA_RS02040	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BUMPUSDA_RS02045	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BUMPUSDA_RS02065	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BUMPUSDA_RS02070	COG2356	endonuclease I
BUMPUSDA_RS02075	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BUMPUSDA_RS02080	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BUMPUSDA_RS02115	COG0148	phosphopyruvate hydratase activity
BUMPUSDA_RS02120	COG0602	queuosine metabolic process
BUMPUSDA_RS02125	COG0720	synthase
BUMPUSDA_RS02130	COG0739	heme binding
BUMPUSDA_RS02130	COG1388	LysM domain
BUMPUSDA_RS02140	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BUMPUSDA_RS02145	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BUMPUSDA_RS02150	COG0529	Catalyzes the synthesis of activated sulfate
BUMPUSDA_RS02165	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BUMPUSDA_RS02165	COG1648	precorrin-2 dehydrogenase activity
BUMPUSDA_RS02180	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BUMPUSDA_RS02190	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BUMPUSDA_RS02195	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BUMPUSDA_RS02205	COG1217	gtp-binding protein TYPA
BUMPUSDA_RS02210	COG0194	GDP metabolic process
BUMPUSDA_RS02215	COG0354	folic acid binding
BUMPUSDA_RS02220	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BUMPUSDA_RS02225	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BUMPUSDA_RS02230	COG0019	diaminopimelate decarboxylase activity
BUMPUSDA_RS02235	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BUMPUSDA_RS02240	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BUMPUSDA_RS02245	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BUMPUSDA_RS02250	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BUMPUSDA_RS02255	COG4535	Mg2 and Co2 transporter CorC
BUMPUSDA_RS02260	COG0495	leucyl-tRNA aminoacylation
BUMPUSDA_RS02265	COG1466	dna polymerase III delta subunit
BUMPUSDA_RS02280	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BUMPUSDA_RS02285	COG2095	MarC family integral membrane protein
BUMPUSDA_RS02295	COG0191	fructose-bisphosphate aldolase activity
BUMPUSDA_RS02300	COG0668	transmembrane transport
BUMPUSDA_RS02305	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BUMPUSDA_RS02310	COG1074	ATP-dependent DNA helicase activity
BUMPUSDA_RS02315	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BUMPUSDA_RS02320	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BUMPUSDA_RS02320	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BUMPUSDA_RS02330	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
BUMPUSDA_RS02340	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BUMPUSDA_RS02345	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BUMPUSDA_RS02350	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BUMPUSDA_RS02365	COG0142	geranyltranstransferase activity
BUMPUSDA_RS02370	COG2814	Major facilitator Superfamily
BUMPUSDA_RS02375	COG2920	part of a sulfur-relay system
BUMPUSDA_RS02385	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BUMPUSDA_RS02390	COG1845	cytochrome c oxidase, subunit III
BUMPUSDA_RS02395	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BUMPUSDA_RS02400	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BUMPUSDA_RS02405	COG0271	Belongs to the BolA IbaG family
BUMPUSDA_RS02415	COG0740	serine-type endopeptidase activity
BUMPUSDA_RS02425	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BUMPUSDA_RS02430	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BUMPUSDA_RS02435	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BUMPUSDA_RS02440	COG1132	(ABC) transporter
BUMPUSDA_RS02445	COG1132	(ABC) transporter
BUMPUSDA_RS02450	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BUMPUSDA_RS02460	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BUMPUSDA_RS02465	COG0326	Molecular chaperone. Has ATPase activity
BUMPUSDA_RS02480	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BUMPUSDA_RS02495	COG1278	Cold shock
BUMPUSDA_RS02515	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BUMPUSDA_RS02520	COG0009	L-threonylcarbamoyladenylate synthase
BUMPUSDA_RS02540	COG0203	ribosomal protein L17
BUMPUSDA_RS02545	COG0202	RNA polymerase activity
BUMPUSDA_RS02555	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BUMPUSDA_RS02570	COG0201	protein transport
BUMPUSDA_RS02585	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BUMPUSDA_RS02595	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BUMPUSDA_RS02605	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BUMPUSDA_RS02610	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BUMPUSDA_RS02615	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BUMPUSDA_RS02630	COG0255	Belongs to the universal ribosomal protein uL29 family
BUMPUSDA_RS02640	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BUMPUSDA_RS02655	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BUMPUSDA_RS02670	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BUMPUSDA_RS02695	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BUMPUSDA_RS02705	COG2923	Belongs to the DsrF TusC family
BUMPUSDA_RS02715	COG0545	Peptidyl-prolyl cis-trans isomerase
BUMPUSDA_RS02720	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BUMPUSDA_RS02730	COG0180	Tryptophanyl-tRNA synthetase
BUMPUSDA_RS02735	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BUMPUSDA_RS02740	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BUMPUSDA_RS02745	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BUMPUSDA_RS02770	COG0252	asparaginase activity
BUMPUSDA_RS02780	COG0629	single-stranded DNA binding
BUMPUSDA_RS02785	COG0305	Participates in initiation and elongation during chromosome replication
BUMPUSDA_RS02790	COG0189	ligase activity
BUMPUSDA_RS02800	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BUMPUSDA_RS02805	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BUMPUSDA_RS02815	COG1194	a g-specific adenine glycosylase
BUMPUSDA_RS02820	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BUMPUSDA_RS02830	COG2925	Exonuclease
BUMPUSDA_RS02860	COG1218	3'(2'),5'-bisphosphate nucleotidase
BUMPUSDA_RS02865	COG0359	binds to the 23S rRNA
BUMPUSDA_RS02880	COG0557	exoribonuclease II activity
BUMPUSDA_RS02890	COG0330	HflC and HflK could
BUMPUSDA_RS02895	COG0330	HflC and HflK could
BUMPUSDA_RS02900	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BUMPUSDA_RS02910	COG0246	Mannitol dehydrogenase
BUMPUSDA_RS02915	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BUMPUSDA_RS02915	COG2213	PTS system mannitol-specific
BUMPUSDA_RS02925	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BUMPUSDA_RS02940	COG0860	N-Acetylmuramoyl-L-alanine amidase
BUMPUSDA_RS02955	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BUMPUSDA_RS02965	COG0071	Belongs to the small heat shock protein (HSP20) family
BUMPUSDA_RS02970	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BUMPUSDA_RS03000	COG0306	phosphate transporter
BUMPUSDA_RS03005	COG2814	Major facilitator Superfamily
BUMPUSDA_RS03045	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BUMPUSDA_RS03050	COG3118	belongs to the thioredoxin family
BUMPUSDA_RS03055	COG0210	DNA helicase
BUMPUSDA_RS03080	COG0822	iron-sulfur transferase activity
BUMPUSDA_RS03095	COG0633	Ferredoxin
BUMPUSDA_RS03105	COG2976	Protein conserved in bacteria
BUMPUSDA_RS03120	COG0445	tRNA wobble uridine modification
BUMPUSDA_RS03150	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid