locus_tag old_locus_tag gene Name start end strand product note type ID NCBI BUMPUSDA_RS00005 BUMPUSDA_CDS00584 BUMPUSDA_RS00005 197 2083 + tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00005 BUMPUSDA_RS00010 BUMPUSDA_CDS00583 BUMPUSDA_RS00010 2255 3079 + ATP synthase F0F1 subunit A Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00010 BUMPUSDA_RS00015 BUMPUSDA_CDS00582 BUMPUSDA_RS00015 3122 3361 + ATP F0F1 synthase subunit C Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00015 BUMPUSDA_RS00020 BUMPUSDA_CDS00581 BUMPUSDA_RS00020 3461 3946 + ATP F0F1 synthase subunit B Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00020 BUMPUSDA_RS00025 BUMPUSDA_CDS00580 BUMPUSDA_RS00025 3946 4479 + ATP synthase F0F1 subunit delta gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00025 BUMPUSDA_RS00030 BUMPUSDA_CDS00579 BUMPUSDA_RS00030 4494 6032 + ATP F0F1 synthase subunit alpha produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00030 BUMPUSDA_RS00035 BUMPUSDA_CDS00578 BUMPUSDA_RS00035 6067 6939 + ATP F0F1 synthase subunit gamma Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00035 BUMPUSDA_RS00040 BUMPUSDA_CDS00577 BUMPUSDA_RS00040 6966 8363 + ATP synthase F0F1 subunit beta gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00040 BUMPUSDA_RS00045 BUMPUSDA_CDS00576 BUMPUSDA_RS00045 8374 8793 + ATP synthase F0F1 subunit epsilon gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00045 BUMPUSDA_RS00050 BUMPUSDA_CDS00575 gyrB gyrB 8864 11275 - DNA gyrase subunit B negatively supercoils closed circular double-stranded DNA gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00050 BUMPUSDA_RS00055 BUMPUSDA_CDS00574 BUMPUSDA_RS00055 11334 12434 - DNA polymerase III subunit beta gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00055 BUMPUSDA_RS00060 BUMPUSDA_CDS00573 dnaA dnaA 12439 13803 - chromosomal replication initiator protein DnaA binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself. gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00060 BUMPUSDA_RS00065 BUMPUSDA_CDS00572 rpmH rpmH 14260 14403 + 50S ribosomal protein L34 in Escherichia coli transcription of this gene is enhanced by polyamines gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00065 BUMPUSDA_RS00070 BUMPUSDA_CDS00571 rnpA rnpA 14416 14760 + ribonuclease P protein component protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00070 BUMPUSDA_RS00075 BUMPUSDA_CDS00570 BUMPUSDA_RS00075 14944 16536 + membrane protein insertase functions to insert inner membrane proteins into the IM in Escherichia coli%3B interacts with transmembrane segments%3B functions in both Sec-dependent and -independent membrane insertion%3B similar to Oxa1p in mitochondria gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00075 BUMPUSDA_RS00080 BUMPUSDA_CDS00569 BUMPUSDA_RS00080 16621 17982 + tRNA modification GTPase MnmE gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00080 BUMPUSDA_RS00085 BUMPUSDA_tRNA32 BUMPUSDA_RS00085 18006 18078 - tRNA-Phe tRNA gene16 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00085 BUMPUSDA_RS00090 BUMPUSDA_CDS00568 groES groES 18350 18640 + molecular chaperone GroES 10 kDa chaperonin%3B Cpn10%3B GroES%3B forms homoheptameric ring%3B binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it%3B folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES%3B release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00090 BUMPUSDA_RS00095 BUMPUSDA_CDS00567 groEL groEL 18689 20335 + molecular chaperone GroEL 60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00095 BUMPUSDA_RS00100 BUMPUSDA_CDS00566 BUMPUSDA_RS00100 20438 21451 - lysine 2%2C3-aminomutase gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00100 BUMPUSDA_RS00105 BUMPUSDA_CDS00565 BUMPUSDA_RS00105 21477 22046 + elongation factor P gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00105 BUMPUSDA_RS00110 BUMPUSDA_CDS00564 BUMPUSDA_RS00110 22062 22802 - DNA replication protein DnaC acts to load the DnaB helicase onto the initiation site during DNA replication gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00110 BUMPUSDA_RS00115 BUMPUSDA_CDS00563 BUMPUSDA_RS00115 22802 23299 - primosomal protein DnaI gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00115 BUMPUSDA_RS00120 BUMPUSDA_CDS00562 rsmD rsmD 23332 23904 - 16S rRNA methyltransferase catalyzes the methylation of 16S rRNA at position G966 gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00120 BUMPUSDA_RS00125 BUMPUSDA_CDS00561 BUMPUSDA_RS00125 24040 25203 + signal recognition particle-docking protein FtsY gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00125 BUMPUSDA_RS00130 BUMPUSDA_CDS00560 BUMPUSDA_RS00130 25357 26214 + RNA polymerase factor sigma-32 binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B this sigma factor is responsible for the expression of heat shock promoters gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00130 BUMPUSDA_RS00135 BUMPUSDA_CDS00559 BUMPUSDA_RS00135 26368 28194 - glucosamine--fructose-6-phosphate aminotransferase Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00135 BUMPUSDA_RS00140 BUMPUSDA_CDS00558 glmU glmU 28260 29630 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00140 BUMPUSDA_RS00145 BUMPUSDA_CDS00557 BUMPUSDA_RS00145 29818 30645 + hypothetical protein gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00145 BUMPUSDA_RS00150 BUMPUSDA_CDS00556 BUMPUSDA_RS00150 30697 31602 - transcriptional regulator homocysteine-binding%3B positive regulator of metA%2C metE and metH gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00150 BUMPUSDA_RS00155 BUMPUSDA_CDS00555 BUMPUSDA_RS00155 31745 34006 + 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00155 BUMPUSDA_RS00160 BUMPUSDA_CDS00554 purH purH 34176 35753 - phosphoribosylaminoimidazolecarboxamide formyltransferase involved in de novo purine biosynthesis gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00160 BUMPUSDA_RS00165 BUMPUSDA_CDS00553 BUMPUSDA_RS00165 35927 36199 - DNA-binding protein gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00165 BUMPUSDA_RS00170 BUMPUSDA_CDS00552 BUMPUSDA_RS00170 36780 41012 - DNA-directed RNA polymerase subunit beta' DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00170 BUMPUSDA_RS00175 BUMPUSDA_CDS00551 rpoB rpoB 41090 45118 - DNA-directed RNA polymerase subunit beta DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00175 BUMPUSDA_RS00180 BUMPUSDA_CDS00550 BUMPUSDA_RS00180 45353 45721 - 50S ribosomal protein L7/L12 gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00180 BUMPUSDA_RS00185 BUMPUSDA_CDS00549 BUMPUSDA_RS00185 45785 46282 - 50S ribosomal protein L10 gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00185 BUMPUSDA_RS00190 BUMPUSDA_CDS00548 BUMPUSDA_RS00190 46513 47208 - 50S ribosomal protein L1 gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00190 BUMPUSDA_RS00195 BUMPUSDA_CDS00547 BUMPUSDA_RS00195 47212 47640 - 50S ribosomal protein L11 gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00195 BUMPUSDA_RS00200 BUMPUSDA_CDS00546 nusG nusG 47699 48244 - transcription termination/antitermination factor NusG Modulates Rho-dependent transcription termination gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00200 BUMPUSDA_RS00205 BUMPUSDA_CDS00545 BUMPUSDA_RS00205 48246 48629 - preprotein translocase subunit SecE gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00205 BUMPUSDA_RS00210 BUMPUSDA_tRNA31 BUMPUSDA_RS00210 48911 48983 - tRNA-Thr tRNA gene41 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00210 BUMPUSDA_RS00215 BUMPUSDA_tRNA30 BUMPUSDA_RS00215 48988 49062 - tRNA-Gly tRNA gene42 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00215 BUMPUSDA_RS00220 BUMPUSDA_tRNA29 BUMPUSDA_RS00220 49082 49163 - tRNA-Tyr tRNA gene43 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00220 BUMPUSDA_RS00225 BUMPUSDA_tRNA28 BUMPUSDA_RS00225 49206 49278 - tRNA-Thr tRNA gene44 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00225 BUMPUSDA_RS00230 BUMPUSDA_CDS00544 murB murB 49396 50466 - UDP-N-acetylenolpyruvoylglucosamine reductase catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00230 BUMPUSDA_RS00235 BUMPUSDA_CDS00543 metF metF 50591 51469 + 5%2C10-methylenetetrahydrofolate reductase MTHFR%3B catalyzes NADH-linked reduction of 5%2C10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00235 BUMPUSDA_RS00240 BUMPUSDA_CDS00542 BUMPUSDA_RS00240 51477 52622 - acetylornithine deacetylase catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00240 BUMPUSDA_RS00245 BUMPUSDA_CDS00541 BUMPUSDA_RS00245 52785 53789 + N-acetyl-gamma-glutamyl-phosphate reductase gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00245 BUMPUSDA_RS00250 BUMPUSDA_CDS00540 BUMPUSDA_RS00250 53807 54583 + acetylglutamate kinase gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00250 BUMPUSDA_RS00255 BUMPUSDA_CDS00539 BUMPUSDA_RS00255 54612 55823 + argininosuccinate synthase gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00255 BUMPUSDA_RS00260 BUMPUSDA_CDS00538 BUMPUSDA_RS00260 55844 57223 + argininosuccinate lyase catalyzes the formation of arginine from (N-L-arginino)succinate gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00260 BUMPUSDA_RS00265 BUMPUSDA_CDS00537 BUMPUSDA_RS00265 57350 57784 + hypothetical protein gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00265 BUMPUSDA_RS00270 BUMPUSDA_CDS00536 BUMPUSDA_RS00270 57860 58306 + preprotein translocase subunit SecB molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm%3B in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00270 BUMPUSDA_RS00275 BUMPUSDA_CDS00535 cysE cysE 58405 59229 + serine acetyltransferase catalyzes the O-acetylation of serine gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00275 BUMPUSDA_RS00280 BUMPUSDA_CDS00534 BUMPUSDA_RS00280 59323 61164 - RNA polymerase sigma factor RpoD sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this is the primary sigma factor of bacteria gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00280 BUMPUSDA_RS00285 BUMPUSDA_CDS00533 dnaG dnaG 61290 63029 - DNA primase synthesizes RNA primers at the replication forks gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00285 BUMPUSDA_RS00290 BUMPUSDA_CDS00532 rpsU rpsU 63105 63320 - 30S ribosomal protein S21 a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00290 BUMPUSDA_RS00295 BUMPUSDA_CDS00531 BUMPUSDA_RS00295 63499 64503 + tRNA threonylcarbamoyladenosine modification protein TsaD gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00295 BUMPUSDA_RS00300 BUMPUSDA_CDS00530 ribB ribB 64539 65177 - 3%2C4-dihydroxy-2-butanone 4-phosphate synthase DHBP synthase%3B functions during riboflavin biosynthesis gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00300 BUMPUSDA_RS00305 BUMPUSDA_CDS00529 BUMPUSDA_RS00305 65419 66366 - hypothetical protein gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00305 BUMPUSDA_RS00310 BUMPUSDA_CDS00528 BUMPUSDA_RS00310 66582 67820 + tRNA CCA-pyrophosphorylase catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA%3B these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00310 BUMPUSDA_RS00315 BUMPUSDA_CDS00527 BUMPUSDA_RS00315 67861 68661 - UDP pyrophosphate phosphatase gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00315 BUMPUSDA_RS00320 BUMPUSDA_CDS00526 BUMPUSDA_RS00320 68744 69247 - PTS glucose transporter subunit IIA phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00320 BUMPUSDA_RS00325 BUMPUSDA_CDS00525 BUMPUSDA_RS00325 69302 71008 - phosphoenolpyruvate-protein phosphotransferase Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00325 BUMPUSDA_RS00330 BUMPUSDA_CDS00524 BUMPUSDA_RS00330 71160 71417 - PTS sugar transporter gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00330 BUMPUSDA_RS00335 BUMPUSDA_CDS00523 BUMPUSDA_RS00335 71550 72518 - cysteine synthase gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00335 BUMPUSDA_RS00340 BUMPUSDA_CDS00522 BUMPUSDA_RS00340 72756 74765 + NAD-dependent DNA ligase LigA gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00340 BUMPUSDA_RS00345 BUMPUSDA_tRNA27 BUMPUSDA_RS00345 74773 74845 - tRNA-Lys tRNA gene68 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00345 BUMPUSDA_RS00350 BUMPUSDA_tRNA26 BUMPUSDA_RS00350 74862 74937 - tRNA-Val tRNA gene69 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00350 BUMPUSDA_RS00355 BUMPUSDA_CDS00521 BUMPUSDA_RS00355 75126 76535 + glutamyl-tRNA synthetase gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00355 BUMPUSDA_RS00360 BUMPUSDA_tRNA1 BUMPUSDA_RS00360 76614 76686 + tRNA-Ala tRNA gene71 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00360 BUMPUSDA_RS00365 BUMPUSDA_CDS00520 BUMPUSDA_RS00365 76827 77138 - flagellar hook-basal body protein FliE gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00365 BUMPUSDA_RS00370 BUMPUSDA_CDS00519 BUMPUSDA_RS00370 77404 79059 + flagellar M-ring protein FliF gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00370 BUMPUSDA_RS00375 BUMPUSDA_CDS00518 BUMPUSDA_RS00375 79056 80051 + flagellar motor switch protein FliG gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00375 BUMPUSDA_RS00380 BUMPUSDA_CDS00517 BUMPUSDA_RS00380 80044 80712 + flagellar assembly protein FliH gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00380 BUMPUSDA_RS00385 BUMPUSDA_CDS00516 fliI fliI 80718 82079 + ATP synthase involved in type III protein export during flagellum assembly gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00385 BUMPUSDA_RS00390 BUMPUSDA_CDS00515 BUMPUSDA_RS00390 82109 82552 + flagellar export protein FliJ gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00390 BUMPUSDA_RS00395 BUMPUSDA_CDS00514 BUMPUSDA_RS00395 82561 82893 + hypothetical protein gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00395 BUMPUSDA_RS00400 BUMPUSDA_CDS00513 BUMPUSDA_RS00400 82977 83720 + hypothetical protein gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00400 BUMPUSDA_RS00410 BUMPUSDA_RS00410 BUMPUSDA_RS00410 84774 85130 + flagellar motor switch protein FliN gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00410 BUMPUSDA_RS00415 BUMPUSDA_RS00415 fliP fliP 85553 86287 + flagellar biosynthesis protein flip FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00415 BUMPUSDA_RS00420 BUMPUSDA_CDS00510 BUMPUSDA_RS00420 86354 86623 + flagellar biosynthetic protein FliQ gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00420 BUMPUSDA_RS00425 BUMPUSDA_CDS00509 fliR fliR 86623 87396 + flagellar biosynthesis protein FliR FliR%2C with proteins FliP and FliQ%2C forms the core of the central channel in the flagella export apparatus gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00425 BUMPUSDA_RS00430 BUMPUSDA_CDS00508 rpmG rpmG 87560 87727 - 50S ribosomal protein L33 in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00430 BUMPUSDA_RS00435 BUMPUSDA_CDS00507 BUMPUSDA_RS00435 87731 87964 - 50S ribosomal protein L28 gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00435 BUMPUSDA_RS00440 BUMPUSDA_CDS00506 BUMPUSDA_RS00440 88251 91157 + hypothetical protein gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00440 BUMPUSDA_RS00445 BUMPUSDA_CDS00505 BUMPUSDA_RS00445 91183 91722 - inorganic pyrophosphatase catalyzes the hydrolysis of pyrophosphate to phosphate gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00445 BUMPUSDA_RS00450 BUMPUSDA_CDS00504 pmbA pmbA 91942 93282 + peptidase PMbA protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00450 BUMPUSDA_RS00455 BUMPUSDA_CDS00503 BUMPUSDA_RS00455 93785 94645 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00455 BUMPUSDA_RS00460 BUMPUSDA_CDS00502 BUMPUSDA_RS00460 94757 95983 + 3-oxoacyl-ACP synthase gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00460 BUMPUSDA_RS00465 BUMPUSDA_CDS00501 BUMPUSDA_RS00465 96016 96966 + transaldolase gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00465 BUMPUSDA_RS00470 BUMPUSDA_CDS00500 BUMPUSDA_RS00470 97015 99012 + transketolase catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00470 BUMPUSDA_RS00475 BUMPUSDA_CDS00499 BUMPUSDA_RS00475 99115 100245 + succinyl-diaminopimelate desuccinylase gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00475 BUMPUSDA_RS00480 BUMPUSDA_CDS00498 BUMPUSDA_RS00480 100639 101523 - 4-hydroxy-tetrahydrodipicolinate synthase gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00480 BUMPUSDA_RS00485 BUMPUSDA_CDS00497 BUMPUSDA_RS00485 102144 103208 - chorismate synthase catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00485 BUMPUSDA_RS00490 BUMPUSDA_CDS00496 BUMPUSDA_RS00490 103465 103998 + hypothetical protein gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00490 BUMPUSDA_RS00495 BUMPUSDA_CDS00495 hisG hisG 104282 105181 + ATP phosphoribosyltransferase long form of enzyme%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00495 BUMPUSDA_RS00500 BUMPUSDA_CDS00494 hisD hisD 105188 106492 + histidinol dehydrogenase catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00500 BUMPUSDA_RS00505 BUMPUSDA_CDS00493 BUMPUSDA_RS00505 106489 107574 + histidinol-phosphate aminotransferase catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00505 BUMPUSDA_RS00510 BUMPUSDA_CDS00492 BUMPUSDA_RS00510 107588 108649 + imidazoleglycerol-phosphate dehydratase catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00510 BUMPUSDA_RS00515 BUMPUSDA_CDS00491 BUMPUSDA_RS00515 108649 109239 + imidazole glycerol phosphate synthase subunit HisH gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00515 BUMPUSDA_RS00520 BUMPUSDA_CDS00490 BUMPUSDA_RS00520 109244 109984 + 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00520 BUMPUSDA_RS00525 BUMPUSDA_CDS00489 BUMPUSDA_RS00525 109963 110739 + imidazole glycerol phosphate synthase gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00525 BUMPUSDA_RS00530 BUMPUSDA_CDS00488 BUMPUSDA_RS00530 110733 111374 + phosphoribosyl-ATP pyrophosphatase catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00530 BUMPUSDA_RS00535 BUMPUSDA_CDS00487 BUMPUSDA_RS00535 111725 113137 + 6-phosphogluconate dehydrogenase catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00535 BUMPUSDA_RS00540 BUMPUSDA_CDS00486 BUMPUSDA_RS00540 113342 113923 + deoxycytidine triphosphate deaminase gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00540 BUMPUSDA_RS00545 BUMPUSDA_CDS00485 BUMPUSDA_RS00545 114009 115655 + methionine--tRNA ligase gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00545 BUMPUSDA_RS00550 BUMPUSDA_CDS00484 BUMPUSDA_RS00550 115716 117041 - tRNA(Ile)-lysidine synthetase gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00550 BUMPUSDA_RS00555 BUMPUSDA_tRNA25 BUMPUSDA_RS00555 117079 117152 - tRNA-Val tRNA gene110 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00555 BUMPUSDA_RS00560 BUMPUSDA_CDS00483 BUMPUSDA_RS00560 117298 117939 + riboflavin synthase subunit alpha gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00560 BUMPUSDA_RS00565 BUMPUSDA_CDS00482 BUMPUSDA_RS00565 117996 118577 + electron transporter RsxA gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00565 BUMPUSDA_RS00570 BUMPUSDA_CDS00481 BUMPUSDA_RS00570 118580 119077 + electron transport complex protein RnfB gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00570 BUMPUSDA_RS00575 BUMPUSDA_CDS00480 BUMPUSDA_RS00575 119195 120682 + electron transporter RnfC gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00575 BUMPUSDA_RS00580 BUMPUSDA_CDS00479 BUMPUSDA_RS00580 120774 121772 + electron transporter RnfD gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00580 BUMPUSDA_RS00585 BUMPUSDA_RS00585 BUMPUSDA_RS00585 121922 122401 + electron transporter RnfG gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00585 BUMPUSDA_RS00590 BUMPUSDA_CDS00477 BUMPUSDA_RS00590 122391 123098 + elongation factor G gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00590 BUMPUSDA_RS00595 BUMPUSDA_CDS00476 BUMPUSDA_RS00595 123076 123711 + endonuclease III DNA-(apurinic or apyrimidinic site) lyase%3B has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity%3B removed damaged DNA at cytosines%2C thymines and guanines gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00595 BUMPUSDA_RS00600 BUMPUSDA_CDS00475 BUMPUSDA_RS00600 123735 125921 + primosomal protein N' gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00600 BUMPUSDA_RS00605 BUMPUSDA_CDS00474 BUMPUSDA_RS00605 126080 127348 + tyrosyl-tRNA synthetase gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00605 BUMPUSDA_RS00610 BUMPUSDA_CDS00473 BUMPUSDA_RS00610 127356 127748 - hypothetical protein gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00610 BUMPUSDA_RS00615 BUMPUSDA_CDS00472 BUMPUSDA_RS00615 127951 129033 + hypothetical protein YdiK%3B inner membrane protein%3B ydiK promoter presents a PurR sequence%2C suggesting that its expression is purine-regulated%3B unknown function gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00615 BUMPUSDA_RS00620 BUMPUSDA_CDS00471 BUMPUSDA_RS00620 129351 130397 + phospho-2-dehydro-3-deoxyheptonate aldolase gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00620 BUMPUSDA_RS00625 BUMPUSDA_CDS00470 thrS thrS 130551 132479 + threonyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00625 BUMPUSDA_RS00630 BUMPUSDA_CDS00469 BUMPUSDA_RS00630 132483 133022 + translation initiation factor IF-3 gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00630 BUMPUSDA_RS00635 BUMPUSDA_CDS00468 BUMPUSDA_RS00635 133116 133313 + 50S ribosomal protein L35 gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00635 BUMPUSDA_RS00640 BUMPUSDA_CDS00467 rplT rplT 133357 133713 + 50S ribosomal protein L20 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00640 BUMPUSDA_RS00645 BUMPUSDA_CDS00466 BUMPUSDA_RS00645 133942 134931 + phenylalanyl-tRNA synthetase subunit alpha gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00645 BUMPUSDA_RS00650 BUMPUSDA_CDS00465 BUMPUSDA_RS00650 134941 137340 + phenylalanine--tRNA ligase subunit beta gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00650 BUMPUSDA_RS00655 BUMPUSDA_CDS00464 BUMPUSDA_RS00655 137345 137647 + integration host factor subunit alpha gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00655 BUMPUSDA_RS00660 BUMPUSDA_CDS00463 queA queA 137700 138767 + S-adenosylmethionine:tRNA ribosyltransferase-isomerase Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00660 BUMPUSDA_RS00665 BUMPUSDA_CDS00462 tgt tgt 138812 139921 + queuine tRNA-ribosyltransferase Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp%2C -Asn%2C -His and -Tyr) gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00665 BUMPUSDA_RS00670 BUMPUSDA_CDS00461 yajC yajC 139941 140279 + preprotein translocase subunit YajC member of preprotein translocase%3B forms a heterotrimer with SecD and SecF%3B links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00670 BUMPUSDA_RS00675 BUMPUSDA_CDS00460 BUMPUSDA_RS00675 140289 142358 - glycine-tRNA synthetase subunit beta gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00675 BUMPUSDA_RS00680 BUMPUSDA_CDS00459 BUMPUSDA_RS00680 142351 143271 - glycyl-tRNA synthetase subunit alpha gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00680 BUMPUSDA_RS00685 BUMPUSDA_CDS00458 folE folE 143457 144122 + GTP cyclohydrolase involved in the first step of tetrahydrofolate biosynthesis%3B catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1%2C2%2C3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water%3B forms a homopolymer gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00685 BUMPUSDA_RS00690 BUMPUSDA_CDS00457 BUMPUSDA_RS00690 144318 145160 + endonuclease IV Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00690 BUMPUSDA_RS00695 BUMPUSDA_CDS00456 BUMPUSDA_RS00695 145204 145488 + 50S ribosomal protein L25 the Ctc family of proteins consists of two types%2C one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00695 BUMPUSDA_RS00700 BUMPUSDA_CDS00455 BUMPUSDA_RS00700 145574 146341 - membrane protein gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00700 BUMPUSDA_RS00705 BUMPUSDA_CDS00454 BUMPUSDA_RS00705 146507 147799 + peptidylprolyl isomerase gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00705 BUMPUSDA_RS00710 BUMPUSDA_CDS00453 BUMPUSDA_RS00710 147851 148672 + dimethyladenosine transferase gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00710 BUMPUSDA_RS00715 BUMPUSDA_CDS00452 BUMPUSDA_RS00715 148717 149532 + diadenosine tetraphosphatase gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00715 BUMPUSDA_RS00720 BUMPUSDA_CDS00451 BUMPUSDA_RS00720 149549 150034 - dihydrofolate reductase gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00720 BUMPUSDA_RS00725 BUMPUSDA_CDS00450 carB carB 150124 153354 - carbamoyl phosphate synthase large subunit four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00725 BUMPUSDA_RS00730 BUMPUSDA_CDS00449 BUMPUSDA_RS00730 153372 154532 - carbamoyl phosphate synthase small subunit catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00730 BUMPUSDA_RS00735 BUMPUSDA_CDS00448 BUMPUSDA_RS00735 154729 155538 - 4-hydroxy-tetrahydrodipicolinate reductase gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00735 BUMPUSDA_RS00740 BUMPUSDA_CDS00447 ispH ispH 155557 156501 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)%3B functions in the nonmevalonate isoprenoid biosynthesis pathway gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00740 BUMPUSDA_RS00745 BUMPUSDA_CDS00446 BUMPUSDA_RS00745 156567 157055 - signal peptidase II gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00745 BUMPUSDA_RS00750 BUMPUSDA_CDS00445 BUMPUSDA_RS00750 157055 159877 - isoleucyl-tRNA synthetase gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00750 BUMPUSDA_RS00755 BUMPUSDA_CDS00444 BUMPUSDA_RS00755 159899 160840 - FAD synthetase gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00755 BUMPUSDA_RS00760 BUMPUSDA_CDS00443 rpsT rpsT 161032 161292 + 30S ribosomal protein S20 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00760 BUMPUSDA_RS00765 BUMPUSDA_CDS00442 BUMPUSDA_RS00765 161355 162491 - molecular chaperone DnaJ chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00765 BUMPUSDA_RS00770 BUMPUSDA_CDS00441 dnaK dnaK 162604 164517 - molecular chaperone DnaK heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00770 BUMPUSDA_RS00775 BUMPUSDA_CDS00440 BUMPUSDA_RS00775 164876 165253 + NADH:ubiquinone oxidoreductase subunit A gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00775 BUMPUSDA_RS00780 BUMPUSDA_CDS00439 BUMPUSDA_RS00780 165308 165985 + NADH dehydrogenase gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00780 BUMPUSDA_RS00785 BUMPUSDA_CDS00438 BUMPUSDA_RS00785 166113 167915 + NADH:ubiquinone oxidoreductase NuoCD%3B NDH-1 shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B subunits NuoCD%2C E%2C F%2C and G constitute the peripheral sector of the complex%3B in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00785 BUMPUSDA_RS00790 BUMPUSDA_CDS00437 BUMPUSDA_RS00790 167947 168426 + NADH dehydrogenase Catalyzes the transfer of electrons from NADH to quinone gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00790 BUMPUSDA_RS00795 BUMPUSDA_CDS00436 BUMPUSDA_RS00795 168423 169757 + NADH dehydrogenase part of NADH-ubiquinone oxidoreductase complex I%3B shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00795 BUMPUSDA_RS00800 BUMPUSDA_CDS00435 BUMPUSDA_RS00800 169814 172549 + NADH dehydrogenase Catalyzes the transfer of electrons from NADH to quinone gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00800 BUMPUSDA_RS00805 BUMPUSDA_CDS00434 BUMPUSDA_RS00805 172546 173514 + NADH:ubiquinone oxidoreductase gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00805 BUMPUSDA_RS00810 BUMPUSDA_CDS00433 BUMPUSDA_RS00810 173539 174081 + NADH dehydrogenase gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00810 BUMPUSDA_RS00815 BUMPUSDA_CDS00432 BUMPUSDA_RS00815 174092 174595 + NADH:ubiquinone oxidoreductase subunit J Catalyzes the transfer of electrons from NADH to quinone gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00815 BUMPUSDA_RS00820 BUMPUSDA_CDS00431 BUMPUSDA_RS00820 174630 174932 + NADH:ubiquinone oxidoreductase subunit K gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00820 BUMPUSDA_RS00825 BUMPUSDA_CDS00430 BUMPUSDA_RS00825 174929 176767 + NADH:ubiquinone oxidoreductase subunit L Catalyzes the transfer of electrons from NADH to ubiquinone gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00825 BUMPUSDA_RS00830 BUMPUSDA_CDS00429 BUMPUSDA_RS00830 176845 178362 + NADH-quinone oxidoreductase subunit M gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00830 BUMPUSDA_RS00835 BUMPUSDA_CDS00428 BUMPUSDA_RS00835 178369 179841 + NADH-quinone oxidoreductase subunit N gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00835 BUMPUSDA_RS00840 BUMPUSDA_CDS00427 BUMPUSDA_RS00840 179874 180830 + hypothetical protein gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00840 BUMPUSDA_RS00845 BUMPUSDA_CDS00426 BUMPUSDA_RS00845 180951 182231 + dihydrofolate synthase gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00845 BUMPUSDA_RS00850 BUMPUSDA_RS00850 BUMPUSDA_RS00850 182231 182449 + hypothetical protein gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00850 BUMPUSDA_RS00855 BUMPUSDA_CDS00425 BUMPUSDA_RS00855 182776 183714 - ribose-phosphate pyrophosphokinase catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00855 BUMPUSDA_RS00860 BUMPUSDA_CDS00424 BUMPUSDA_RS00860 183816 184703 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00860 BUMPUSDA_RS00865 BUMPUSDA_CDS00423 prfA prfA 184923 186005 + peptide chain release factor 1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2 gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00865 BUMPUSDA_RS00870 BUMPUSDA_CDS00422 BUMPUSDA_RS00870 186005 186838 + SAM-dependent methyltransferase gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00870 BUMPUSDA_RS00875 BUMPUSDA_CDS00421 BUMPUSDA_RS00875 186998 187807 + hypothetical protein gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00875 BUMPUSDA_RS00880 BUMPUSDA_CDS00420 nadE nadE 187822 188628 - NAD synthetase catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00880 BUMPUSDA_RS00885 BUMPUSDA_CDS00419 BUMPUSDA_RS00885 188734 189939 + acetate kinase AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation%3B utilizes magnesium and ATP%3B also involved in conversion of acetate to aceyl-CoA%3B also known to act on propionate gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00885 BUMPUSDA_RS00890 BUMPUSDA_CDS00418 BUMPUSDA_RS00890 189985 192111 + phosphate acetyltransferase gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00890 BUMPUSDA_RS00895 BUMPUSDA_CDS00417 BUMPUSDA_RS00895 192120 192383 - (2Fe-2S)-binding protein gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00895 BUMPUSDA_RS00900 BUMPUSDA_CDS00416 BUMPUSDA_RS00900 192385 193515 - ribonucleotide-diphosphate reductase subunit beta B2 or R2 protein%3B type 1a enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdA gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00900 BUMPUSDA_RS00905 BUMPUSDA_CDS00415 BUMPUSDA_RS00905 193578 195860 - ribonucleotide-diphosphate reductase subunit alpha Catalyzes the rate-limiting step in dNTP synthesis gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00905 BUMPUSDA_RS00910 BUMPUSDA_CDS00414 BUMPUSDA_RS00910 195933 198422 - DNA gyrase subunit A gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00910 BUMPUSDA_RS00915 BUMPUSDA_CDS00413 BUMPUSDA_RS00915 198690 199433 + hypothetical protein gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00915 BUMPUSDA_RS00920 BUMPUSDA_CDS00412 BUMPUSDA_RS00920 199544 200137 - peroxiredoxin gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00920 BUMPUSDA_RS00925 BUMPUSDA_CDS00411 BUMPUSDA_RS00925 200258 200899 + uracil-DNA glycosylase Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00925 BUMPUSDA_RS00930 BUMPUSDA_CDS00410 BUMPUSDA_RS00930 201010 201567 - co-chaperone GrpE gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00930 BUMPUSDA_RS00935 BUMPUSDA_CDS00409 ppnK ppnK 201681 202559 + inorganic polyphosphate kinase catalyzes the phosphorylation of NAD to NADP gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00935 BUMPUSDA_RS00940 BUMPUSDA_CDS00408 BUMPUSDA_RS00940 202645 202950 + hypothetical protein gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00940 BUMPUSDA_RS00945 BUMPUSDA_CDS00407 BUMPUSDA_RS00945 203460 203786 + glutaredoxin gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00945 BUMPUSDA_RS00950 BUMPUSDA_CDS00406 BUMPUSDA_RS00950 203928 204602 - ribonuclease T Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00950 BUMPUSDA_RS00955 BUMPUSDA_CDS00405 BUMPUSDA_RS00955 204962 205573 + superoxide dismutase SodA%3B manganese binding%3B only present under aerobic conditions%3B destroys free radicals gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00955 BUMPUSDA_RS00960 BUMPUSDA_CDS00404 BUMPUSDA_RS00960 205761 206303 + peptidyl-tRNA hydrolase gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00960 BUMPUSDA_RS00965 BUMPUSDA_CDS00403 ychF ychF 206337 207425 + GTP-binding protein EngD%3B translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1 gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00965 BUMPUSDA_RS00970 BUMPUSDA_CDS00402 BUMPUSDA_RS00970 207494 208780 - threonine synthase gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00970 BUMPUSDA_RS00975 BUMPUSDA_CDS00401 BUMPUSDA_RS00975 208784 209713 - homoserine kinase gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00975 BUMPUSDA_RS00980 BUMPUSDA_CDS00400 thrA thrA 209735 212179 - aspartate kinase multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00980 BUMPUSDA_RS00985 BUMPUSDA_CDS00399 BUMPUSDA_RS00985 212830 213363 + hypoxanthine phosphoribosyltransferase catalyzes the formation of inosine monophosphate from hypoxanthine and 5-phospho-alpha-D-ribose 1-diphosphate gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00985 BUMPUSDA_RS00990 BUMPUSDA_CDS00398 panC panC 213372 214226 - pantoate--beta-alanine ligase catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00990 BUMPUSDA_RS00995 BUMPUSDA_CDS00397 panB panB 214243 215034 - 3-methyl-2-oxobutanoate hydroxymethyltransferase catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5%2C10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS00995 BUMPUSDA_RS01000 BUMPUSDA_CDS00396 dksA dksA 215140 215595 - RNA polymerase-binding transcription factor gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01000 BUMPUSDA_RS01005 BUMPUSDA_CDS00395 BUMPUSDA_RS01005 215849 216649 + tRNA pseudouridine synthase A gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01005 BUMPUSDA_RS01010 BUMPUSDA_CDS00394 BUMPUSDA_RS01010 216777 219041 + penicillin-binding protein gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01010 BUMPUSDA_RS01015 BUMPUSDA_CDS00393 secA secA 219245 221866 + preprotein translocase subunit SecA functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01015 BUMPUSDA_RS01020 BUMPUSDA_CDS00392 BUMPUSDA_RS01020 221892 222317 + DNA mismatch repair protein MutT gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01020 BUMPUSDA_RS01025 BUMPUSDA_CDS00391 coaE coaE 222367 223020 - dephospho-CoA kinase catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A%3B involved in coenzyme A biosynthesis gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01025 BUMPUSDA_RS01030 BUMPUSDA_CDS00390 BUMPUSDA_RS01030 223144 224193 + GMP reductase catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01030 BUMPUSDA_RS01035 BUMPUSDA_CDS00389 aceE aceE 224402 227068 + pyruvate dehydrogenase E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01035 BUMPUSDA_RS01040 BUMPUSDA_CDS00388 BUMPUSDA_RS01040 227099 228289 + dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01040 BUMPUSDA_RS01045 BUMPUSDA_CDS00387 BUMPUSDA_RS01045 228326 229747 + dihydrolipoamide dehydrogenase E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01045 BUMPUSDA_RS01050 BUMPUSDA_CDS00386 BUMPUSDA_RS01050 229919 230722 - S-adenosylmethionine decarboxylase S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01050 BUMPUSDA_RS01055 BUMPUSDA_CDS00385 BUMPUSDA_RS01055 230749 231609 - spermidine synthase gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01055 BUMPUSDA_RS01060 BUMPUSDA_CDS00384 BUMPUSDA_RS01060 231873 232574 - 5'-methylthioadenosine nucleosidase gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01060 BUMPUSDA_RS01065 BUMPUSDA_CDS00383 BUMPUSDA_RS01065 232638 232982 - iron--sulfur cluster insertion protein ErpA gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01065 BUMPUSDA_RS01070 BUMPUSDA_CDS00382 BUMPUSDA_RS01070 233210 234370 - cell division protein FtsZ GTPase%3B similar structure to tubulin%3B forms ring-shaped polymers at the site of cell division%3B other proteins such as FtsA%2C ZipA%2C and ZapA%2C interact with and regulate FtsZ function gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01070 BUMPUSDA_RS01075 BUMPUSDA_CDS00381 ftsA ftsA 234425 235681 - cell division protein FtsA ATP-binding involved in recruitment of FtsK to Z ring%3B essential cell division protein%3B colocalizes with FtsZ through direct interaction to the septal ring structure%3B structurally similar to eukaryotic actin%3B binds directly to the cell membrane gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01075 BUMPUSDA_RS01080 BUMPUSDA_CDS00380 ddl ddl 235790 236707 - D-alanine--D-alanine ligase D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01080 BUMPUSDA_RS01085 BUMPUSDA_CDS00379 BUMPUSDA_RS01085 236724 238073 - UDP-N-acetylmuramate--alanine ligase gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01085 BUMPUSDA_RS01090 BUMPUSDA_CDS00378 BUMPUSDA_RS01090 238225 239289 - UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP acetylglucosamine transferase gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01090 BUMPUSDA_RS01095 BUMPUSDA_CDS00377 BUMPUSDA_RS01095 239286 240467 - flippase gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01095 BUMPUSDA_RS01100 BUMPUSDA_CDS00376 murD murD 240464 241783 - UDP-N-acetylmuramoylalanine--D-glutamate ligase UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01100 BUMPUSDA_RS01105 BUMPUSDA_CDS00375 mraY mraY 241783 242856 - phospho-N-acetylmuramoyl-pentapeptide transferase First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01105 BUMPUSDA_RS01110 BUMPUSDA_CDS00374 BUMPUSDA_RS01110 242837 244219 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01110 BUMPUSDA_RS01115 BUMPUSDA_CDS00373 murE murE 244216 245712 - UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C 6-diaminopimelate ligase involved in cell wall formation%3B peptidoglycan synthesis%3B cytoplasmic enzyme%3B catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01115 BUMPUSDA_RS01120 BUMPUSDA_CDS00372 BUMPUSDA_RS01120 245735 247450 - cell division protein FtsI penicillin-binding protein 3%3B transpeptidase involved in septal peptidoglycan synthesis gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01120 BUMPUSDA_RS01125 BUMPUSDA_CDS00371 BUMPUSDA_RS01125 247504 247768 - cell division protein FtsL gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01125 BUMPUSDA_RS01130 BUMPUSDA_CDS00370 BUMPUSDA_RS01130 247771 248709 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01130 BUMPUSDA_RS01135 BUMPUSDA_CDS00369 ilvH ilvH 248944 249420 - acetolactate synthase 3 regulatory subunit with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01135 BUMPUSDA_RS01140 BUMPUSDA_CDS00368 BUMPUSDA_RS01140 249425 251140 - acetolactate synthase 3 catalytic subunit catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01140 BUMPUSDA_RS01145 BUMPUSDA_CDS00367 BUMPUSDA_RS01145 251397 252401 - thiamine biosynthesis protein ApbE gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01145 BUMPUSDA_RS01150 BUMPUSDA_CDS00366 BUMPUSDA_RS01150 252665 254101 + serine endoprotease protease Do%3B required at high temperature%3B degrades damaged proteins gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01150 BUMPUSDA_RS01155 BUMPUSDA_CDS00365 dapD dapD 254156 254980 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-carboxylate N-succinyltransferase catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01155 BUMPUSDA_RS01160 BUMPUSDA_CDS00364 BUMPUSDA_RS01160 255033 255827 - methionine aminopeptidase catalyzes the removal of N-terminal amino acids from peptides and arylamides%3B generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn%2C Fe%2C or Mn gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01160 BUMPUSDA_RS01165 BUMPUSDA_CDS00363 BUMPUSDA_RS01165 256156 256875 + 30S ribosomal protein S2 gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01165 BUMPUSDA_RS01170 BUMPUSDA_CDS00362 tsf tsf 256968 257771 + elongation factor Ts EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01170 BUMPUSDA_RS01175 BUMPUSDA_CDS00361 BUMPUSDA_RS01175 257872 258600 + uridylate kinase gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01175 BUMPUSDA_RS01180 BUMPUSDA_CDS00360 frr frr 258717 259238 + ribosome recycling factor Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01180 BUMPUSDA_RS01185 BUMPUSDA_CDS00359 BUMPUSDA_RS01185 259313 260509 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01185 BUMPUSDA_RS01190 BUMPUSDA_CDS00358 BUMPUSDA_RS01190 260601 261356 + UDP pyrophosphate synthase gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01190 BUMPUSDA_RS01195 BUMPUSDA_CDS00357 BUMPUSDA_RS01195 261422 263824 + hypothetical protein gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01195 BUMPUSDA_RS01200 BUMPUSDA_CDS00356 BUMPUSDA_RS01200 263972 264427 + 3-hydroxyacyl-ACP dehydratase gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01200 BUMPUSDA_RS01205 BUMPUSDA_CDS00355 dnaE dnaE 264463 267948 + DNA polymerase III subunit alpha catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time%3B main replicative polymerase gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01205 BUMPUSDA_RS01210 BUMPUSDA_CDS00354 BUMPUSDA_RS01210 268220 269938 - prolyl-tRNA synthetase catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01210 BUMPUSDA_RS01215 BUMPUSDA_CDS00353 flhB flhB 270294 271436 + flagellar biosynthesis protein FlhB membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01215 BUMPUSDA_RS01220 BUMPUSDA_CDS00352 BUMPUSDA_RS01220 271436 273520 + flagellar biosynthesis protein FlhA gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01220 BUMPUSDA_RS01225 BUMPUSDA_CDS00351 BUMPUSDA_RS01225 273637 275376 - arginyl-tRNA synthetase gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01225 BUMPUSDA_RS01230 BUMPUSDA_rRNA2 BUMPUSDA_RS01230 275731 277278 + 16S ribosomal RNA rRNA gene245 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01230 BUMPUSDA_RS01235 BUMPUSDA_tRNA2 BUMPUSDA_RS01235 277332 277408 + tRNA-Ile tRNA gene246 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01235 BUMPUSDA_RS01240 BUMPUSDA_tRNA3 BUMPUSDA_RS01240 277423 277495 + tRNA-Ala tRNA gene247 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01240 BUMPUSDA_RS01245 BUMPUSDA_RS01245 BUMPUSDA_RS01245 278303 278521 - ribonuclease H gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01245 BUMPUSDA_RS01250 BUMPUSDA_RS01250 BUMPUSDA_RS01250 278479 278772 - ribonuclease H gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01250 BUMPUSDA_RS01255 BUMPUSDA_CDS00347 BUMPUSDA_RS01255 278811 279527 + DNA polymerase III subunit epsilon gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01255 BUMPUSDA_RS01260 BUMPUSDA_tRNA4 BUMPUSDA_RS01260 279598 279671 + tRNA-Asp tRNA gene252 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01260 BUMPUSDA_RS01265 BUMPUSDA_CDS00346 BUMPUSDA_RS01265 279752 280351 + phosphoheptose isomerase gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01265 BUMPUSDA_RS01270 BUMPUSDA_CDS00345 BUMPUSDA_RS01270 280441 280902 + xanthine phosphoribosyltransferase gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01270 BUMPUSDA_RS01275 BUMPUSDA_CDS00344 BUMPUSDA_RS01275 281023 281577 + co-chaperone GrpE gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01275 BUMPUSDA_RS01280 BUMPUSDA_CDS00343 BUMPUSDA_RS01280 281689 281973 - hypothetical protein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01280 BUMPUSDA_RS01285 BUMPUSDA_CDS00342 BUMPUSDA_RS01285 282021 282506 + SsrA-binding protein gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01285 BUMPUSDA_RS01290 BUMPUSDA_CDS00341 BUMPUSDA_RS01290 282515 282994 + hypothetical protein gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01290 BUMPUSDA_RS01295 BUMPUSDA_CDS00340 acpS acpS 283001 283381 - 4'-phosphopantetheinyl transferase Catalyzes the formation of holo-ACP%2C which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01295 BUMPUSDA_RS01300 BUMPUSDA_CDS00339 BUMPUSDA_RS01300 283474 284343 - GTPase Era gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01300 BUMPUSDA_RS01305 BUMPUSDA_CDS00338 rnc rnc 284340 285020 - ribonuclease III cytoplasmic enzyme involved in processing rRNA and some mRNAs%3B substrates typically have dsRNA regions%3B forms a homodimer%3B have N-terminal nuclease and C-terminal RNA-binding domains%3B requires magnesium as preferred ion for activity gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01305 BUMPUSDA_RS01310 BUMPUSDA_CDS00337 BUMPUSDA_RS01310 285142 286068 - signal peptidase I catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01310 BUMPUSDA_RS01315 BUMPUSDA_CDS00336 BUMPUSDA_RS01315 286084 287877 - elongation factor 4 gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01315 BUMPUSDA_RS01320 BUMPUSDA_RS01320 BUMPUSDA_RS01320 287833 288057 + hypothetical protein gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01320 BUMPUSDA_RS01325 BUMPUSDA_CDS00335 mnmA mnmA 288082 289191 + tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01325 BUMPUSDA_RS01330 BUMPUSDA_CDS00334 BUMPUSDA_RS01330 289237 289872 + lysogenization protein HflD gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01330 BUMPUSDA_RS01335 BUMPUSDA_CDS00333 BUMPUSDA_RS01335 289907 291277 + adenylosuccinate lyase Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01335 BUMPUSDA_RS01340 BUMPUSDA_CDS00332 BUMPUSDA_RS01340 291385 291977 + murein transglycosylase gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01340 BUMPUSDA_RS01345 BUMPUSDA_CDS00331 BUMPUSDA_RS01345 292079 292858 + enoyl-ACP reductase gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01345 BUMPUSDA_RS01350 BUMPUSDA_CDS00330 BUMPUSDA_RS01350 293054 294991 + exoribonuclease II Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01350 BUMPUSDA_RS01355 BUMPUSDA_CDS00329 BUMPUSDA_RS01355 295111 295758 + membrane protein BU267 gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01355 BUMPUSDA_RS01360 BUMPUSDA_CDS00328 BUMPUSDA_RS01360 295801 296445 + octanoyltransferase gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01360 BUMPUSDA_RS01365 BUMPUSDA_CDS00327 BUMPUSDA_RS01365 296575 297528 + lipoyl synthase gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01365 BUMPUSDA_RS01370 BUMPUSDA_CDS00326 BUMPUSDA_RS01370 297666 298376 + orotidine 5'-phosphate decarboxylase gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01370 BUMPUSDA_RS01375 BUMPUSDA_CDS00325 ribA ribA 298419 299009 + GTP cyclohydrolase catalyzes the conversion of GTP to formate and 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01375 BUMPUSDA_RS01380 BUMPUSDA_CDS00324 cls cls 299187 300647 - cardiolipin synthase catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01380 BUMPUSDA_RS01385 BUMPUSDA_CDS00323 BUMPUSDA_RS01385 300840 301247 - hypothetical protein gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01385 BUMPUSDA_RS01390 BUMPUSDA_CDS00322 BUMPUSDA_RS01390 301296 301829 - septation protein A gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01390 BUMPUSDA_RS01395 BUMPUSDA_CDS00321 BUMPUSDA_RS01395 301859 302602 - hypothetical protein gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01395 BUMPUSDA_RS01400 BUMPUSDA_CDS00320 BUMPUSDA_RS01400 302707 303516 - tryptophan synthase subunit alpha gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01400 BUMPUSDA_RS01405 BUMPUSDA_CDS00319 BUMPUSDA_RS01405 303503 304702 - tryptophan synthase subunit beta catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01405 BUMPUSDA_RS01410 BUMPUSDA_CDS00318 BUMPUSDA_RS01410 304733 306094 - indole-3-glycerol phosphate synthase monomeric bifunctional protein%3B functions in tryptophan biosynthesis pathway%3B phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01410 BUMPUSDA_RS01415 BUMPUSDA_CDS00317 BUMPUSDA_RS01415 306075 307103 - anthranilate phosphoribosyltransferase gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01415 BUMPUSDA_RS01420 BUMPUSDA_CDS00316 BUMPUSDA_RS01420 307330 308223 + multidrug DMT transporter permease gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01420 BUMPUSDA_RS01425 BUMPUSDA_CDS00315 BUMPUSDA_RS01425 308271 309020 + 23S rRNA pseudouridylate synthase catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01425 BUMPUSDA_RS01430 BUMPUSDA_CDS00314 BUMPUSDA_RS01430 309108 310145 + peptidase multicopy suppressor of htrA(degP) gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01430 BUMPUSDA_RS01435 BUMPUSDA_CDS00313 BUMPUSDA_RS01435 310256 312823 + DNA topoisomerase I catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01435 BUMPUSDA_RS01440 BUMPUSDA_CDS00312 BUMPUSDA_RS01440 312859 313656 - inositol monophosphatase gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01440 BUMPUSDA_RS01445 BUMPUSDA_CDS00311 BUMPUSDA_RS01445 313892 314977 + 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 23S rRNA m2A2503 methyltransferase%3B methylates the C2 position of the A2530 nucleotide in 23S rRNA%3B may be involved in antibiotic resistance gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01445 BUMPUSDA_RS01450 BUMPUSDA_CDS00310 BUMPUSDA_RS01450 315003 316109 + 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01450 BUMPUSDA_RS01455 BUMPUSDA_CDS00309 hisS hisS 316160 317431 + histidyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01455 BUMPUSDA_RS01460 BUMPUSDA_CDS00308 BUMPUSDA_RS01460 317477 318730 + serine hydroxymethyltransferase gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01460 BUMPUSDA_RS01465 BUMPUSDA_CDS00307 bioD bioD 318822 319493 - dethiobiotin synthetase DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01465 BUMPUSDA_RS01470 BUMPUSDA_CDS00306 BUMPUSDA_RS01470 319834 320862 - biotin synthase catalyzes the formation of biotin from dethiobiotin gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01470 BUMPUSDA_RS01475 BUMPUSDA_CDS00305 BUMPUSDA_RS01475 320941 322227 + adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01475 BUMPUSDA_RS01480 BUMPUSDA_CDS00304 BUMPUSDA_RS01480 322252 323256 - 6-phosphogluconolactonase gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01480 BUMPUSDA_RS01485 BUMPUSDA_CDS00303 BUMPUSDA_RS01485 323364 325796 - transcription-repair-coupling factor gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01485 BUMPUSDA_RS01490 BUMPUSDA_CDS00302 BUMPUSDA_RS01490 326369 327568 + permease gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01490 BUMPUSDA_RS01495 BUMPUSDA_CDS00301 lolD lolD 327561 328247 + lipoprotein ABC transporter ATP-binding protein outer membrane specific%3B part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins%2C from the inner membrane to the periplasmic chaperone gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01495 BUMPUSDA_RS01500 BUMPUSDA_CDS00300 BUMPUSDA_RS01500 328265 329497 + membrane protein gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01500 BUMPUSDA_RS01505 BUMPUSDA_CDS00299 BUMPUSDA_RS01505 329615 330631 + glyceraldehyde-3-phosphate dehydrogenase gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01505 BUMPUSDA_RS01510 BUMPUSDA_CDS00298 BUMPUSDA_RS01510 330787 331575 - NADPH-dependent 7-cyano-7-deazaguanine reductase gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01510 BUMPUSDA_RS01515 BUMPUSDA_CDS00297 BUMPUSDA_RS01515 331684 332193 - flavodoxin gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01515 BUMPUSDA_RS01520 BUMPUSDA_CDS00296 BUMPUSDA_RS01520 332430 333887 + deoxyribodipyrimidine photolyase gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01520 BUMPUSDA_RS01525 BUMPUSDA_CDS00295 BUMPUSDA_RS01525 333880 334623 + Nif3-like dinuclear metal center hexameric protein gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01525 BUMPUSDA_RS01530 BUMPUSDA_CDS00294 BUMPUSDA_RS01530 334702 337428 + 2-oxoglutarate dehydrogenase E1 component gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01530 BUMPUSDA_RS01535 BUMPUSDA_CDS00293 BUMPUSDA_RS01535 337442 338587 + dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex%3B catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01535 BUMPUSDA_RS01540 BUMPUSDA_CDS00292 gpmA gpmA 338711 339406 + phosphoglyceromutase 2%2C3-bisphosphoglycerate-dependent%3B catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01540 BUMPUSDA_RS01545 BUMPUSDA_CDS00291 BUMPUSDA_RS01545 339583 340545 + 6-phosphofructokinase catalyzes the formation of D-fructose 1%2C6-bisphosphate from D-fructose 6-phosphate in glycolysis gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01545 BUMPUSDA_RS01550 BUMPUSDA_CDS00290 BUMPUSDA_RS01550 340629 341432 + glycerol transporter gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01550 BUMPUSDA_RS01555 BUMPUSDA_CDS00289 BUMPUSDA_RS01555 341455 342210 - triosephosphate isomerase gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01555 BUMPUSDA_RS01560 BUMPUSDA_CDS00288 ihfB ihfB 342318 342602 - integration host factor subunit beta This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01560 BUMPUSDA_RS01565 BUMPUSDA_CDS00287 rpsA rpsA 342674 344350 - 30S ribosomal protein S1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01565 BUMPUSDA_RS01570 BUMPUSDA_RS01570 BUMPUSDA_RS01570 344475 344762 - cytidylate kinase gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01570 BUMPUSDA_RS01575 BUMPUSDA_RS01575 BUMPUSDA_RS01575 344906 345133 - cytidylate kinase gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01575 BUMPUSDA_RS01580 BUMPUSDA_CDS00284 BUMPUSDA_RS01580 345193 346482 - 3-phosphoshikimate 1-carboxyvinyltransferase gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01580 BUMPUSDA_RS01585 BUMPUSDA_CDS00283 BUMPUSDA_RS01585 346545 347630 - 3-phosphoserine/phosphohydroxythreonine aminotransferase catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01585 BUMPUSDA_RS01590 BUMPUSDA_CDS00282 BUMPUSDA_RS01590 347672 348955 - seryl-tRNA synthetase gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01590 BUMPUSDA_RS01595 BUMPUSDA_CDS00281 BUMPUSDA_RS01595 349348 350310 + thioredoxin reductase catalyzes the transfer of electrons from NADPH to thioredoxin%3B FAD/NAD(P) binding gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01595 BUMPUSDA_RS01600 BUMPUSDA_CDS00280 BUMPUSDA_RS01600 350406 350624 + translation initiation factor IF-1 gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01600 BUMPUSDA_RS01605 BUMPUSDA_CDS00279 BUMPUSDA_RS01605 350837 352603 + aspartyl-tRNA synthetase gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01605 BUMPUSDA_RS01610 BUMPUSDA_CDS00278 znuB znuB 352624 353412 - zinc ABC transporter permease involved in transport of zinc(II) with ZnuA and C gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01610 BUMPUSDA_RS01615 BUMPUSDA_CDS00277 znuC znuC 353446 354162 - zinc ABC transporter ATPase involved in transport of zinc(II) with ZnuA and C gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01615 BUMPUSDA_RS01620 BUMPUSDA_RS01620 BUMPUSDA_RS01620 354237 354560 + hypothetical protein gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01620 BUMPUSDA_RS01625 BUMPUSDA_RS01625 BUMPUSDA_RS01625 354638 355198 + hypothetical protein gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01625 BUMPUSDA_RS01630 BUMPUSDA_RS01630 BUMPUSDA_RS01630 355200 356405 + hypothetical protein gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01630 BUMPUSDA_RS01635 BUMPUSDA_CDS00273 BUMPUSDA_RS01635 356411 357853 - pyruvate kinase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01635 BUMPUSDA_RS01640 BUMPUSDA_CDS00272 BUMPUSDA_RS01640 358142 359620 + glucose-6-phosphate dehydrogenase catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01640 BUMPUSDA_RS01645 BUMPUSDA_CDS00271 BUMPUSDA_RS01645 359797 360678 + heat-shock protein HtpX metalloprotease gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01645 BUMPUSDA_RS01650 BUMPUSDA_CDS00270 BUMPUSDA_RS01650 361454 363034 + membrane protein gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01650 BUMPUSDA_RS01655 BUMPUSDA_CDS00269 BUMPUSDA_RS01655 363094 363759 + tRNA threonylcarbamoyladenosine biosynthesis protein TsaB gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01655 BUMPUSDA_RS01660 BUMPUSDA_CDS00268 minE minE 363879 364145 - cell division topological specificity factor MinE works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01660 BUMPUSDA_RS01665 BUMPUSDA_CDS00267 BUMPUSDA_RS01665 364148 364960 - cell division inhibitor MinD ATPase%3B with MinC inhibits cell division by blocking formation of the polar Z ring septums gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01665 BUMPUSDA_RS01670 BUMPUSDA_CDS00266 minC minC 364989 365702 - septum formation inhibitor blocks the formation of polar Z-ring septums gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01670 BUMPUSDA_RS01675 BUMPUSDA_CDS00265 BUMPUSDA_RS01675 366166 366963 + 16S rRNA methyltransferase gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01675 BUMPUSDA_RS01680 BUMPUSDA_tRNA24 BUMPUSDA_RS01680 366990 367076 - tRNA-Leu tRNA gene336 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01680 BUMPUSDA_RS01685 BUMPUSDA_tRNA5 BUMPUSDA_RS01685 367300 367384 + tRNA-Ser tRNA gene337 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01685 BUMPUSDA_RS01690 BUMPUSDA_CDS00264 BUMPUSDA_RS01690 367479 368534 - membrane protein gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01690 BUMPUSDA_RS01695 BUMPUSDA_CDS00263 BUMPUSDA_RS01695 368741 370276 - membrane protein gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01695 BUMPUSDA_RS01700 BUMPUSDA_CDS00262 BUMPUSDA_RS01700 370393 371442 + dihydroorotase gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01700 BUMPUSDA_RS01705 BUMPUSDA_CDS00261 BUMPUSDA_RS01705 371477 371884 - hypothetical protein gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01705 BUMPUSDA_RS01710 BUMPUSDA_CDS00260 BUMPUSDA_RS01710 372017 372676 - flagellar basal body P-ring biosynthesis protein FlgA gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01710 BUMPUSDA_RS01715 BUMPUSDA_CDS00259 BUMPUSDA_RS01715 372933 373334 + flagellar biosynthesis protein FlgB gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01715 BUMPUSDA_RS01720 BUMPUSDA_CDS00258 flgC flgC 373343 373753 + flagellar basal body rod protein FlgC with FlgF and B makes up the proximal portion of the flagellar basal body rod gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01720 BUMPUSDA_RS01725 BUMPUSDA_CDS00257 BUMPUSDA_RS01725 373764 374426 + flagellar hook capping protein FlgD gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01725 BUMPUSDA_RS01730 BUMPUSDA_CDS00256 BUMPUSDA_RS01730 374471 375712 + flagellar hook protein FlgE gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01730 BUMPUSDA_RS01735 BUMPUSDA_CDS00255 flgF flgF 375739 376494 + flagellar basal body rod protein FlgF FlgF%2C with FlgB and C%2C makes up the proximal portion of the flagellar basal body rod gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01735 BUMPUSDA_RS01740 BUMPUSDA_CDS00254 flgG flgG 376510 377292 + flagellar basal body rod protein FlgG makes up the distal portion of the flagellar basal body rod gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01740 BUMPUSDA_RS01745 BUMPUSDA_CDS00253 flgH flgH 377379 378095 + flagellar basal body L-ring protein part of the flagellar basal body which consists of four rings L%2CP%2C S and M mounted on a central rod gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01745 BUMPUSDA_RS01750 BUMPUSDA_CDS00252 flgI flgI 378311 379426 + flagellar basal body P-ring biosynthesis protein FlgA part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B Vibrio parahaemolyticus%2C Yersinia%2C Bradyrhizobium and other bacteria have two copies of this and other flagellar genes%3B the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01750 BUMPUSDA_RS01755 BUMPUSDA_CDS00251 BUMPUSDA_RS01755 379426 379737 + flagellar rod assembly protein FlgJ gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01755 BUMPUSDA_RS01760 BUMPUSDA_CDS00250 BUMPUSDA_RS01760 379823 381424 + flagellar hook protein gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01760 BUMPUSDA_RS01765 BUMPUSDA_CDS00249 BUMPUSDA_RS01765 381530 384277 - ribonuclease E gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01765 BUMPUSDA_RS01770 BUMPUSDA_CDS00248 BUMPUSDA_RS01770 384621 385565 + pseudouridine synthase gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01770 BUMPUSDA_RS01775 BUMPUSDA_CDS00247 BUMPUSDA_RS01775 385656 385820 + 50S ribosomal protein L32 gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01775 BUMPUSDA_RS01780 BUMPUSDA_CDS00246 BUMPUSDA_RS01780 385986 386936 + hypothetical protein gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01780 BUMPUSDA_RS01785 BUMPUSDA_CDS00245 BUMPUSDA_RS01785 386929 387663 + 3-oxoacyl-ACP reductase gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01785 BUMPUSDA_RS01790 BUMPUSDA_CDS00244 BUMPUSDA_RS01790 387736 387975 + acyl carrier protein carries the fatty acid chain in fatty acid biosynthesis gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01790 BUMPUSDA_RS01795 BUMPUSDA_CDS00243 BUMPUSDA_RS01795 388083 388721 + thymidylate kinase gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01795 BUMPUSDA_RS01800 BUMPUSDA_CDS00242 BUMPUSDA_RS01800 388718 389707 + DNA polymerase III subunit delta' gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01800 BUMPUSDA_RS01805 BUMPUSDA_CDS00241 BUMPUSDA_RS01805 389742 390536 + DNAse gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01805 BUMPUSDA_RS01810 BUMPUSDA_CDS00240 BUMPUSDA_RS01810 390618 392054 + PTS glucose subunit IIBC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01810 BUMPUSDA_RS01815 BUMPUSDA_CDS00239 BUMPUSDA_RS01815 392090 392434 + purine nucleoside phosphoramidase gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01815 BUMPUSDA_RS01820 BUMPUSDA_CDS00238 BUMPUSDA_RS01820 392652 393038 + hypothetical protein gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01820 BUMPUSDA_RS01825 BUMPUSDA_CDS00237 BUMPUSDA_RS01825 393251 394393 - porin gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01825 BUMPUSDA_RS01830 BUMPUSDA_CDS00236 BUMPUSDA_RS01830 394547 395947 - asparaginyl-tRNA synthetase gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01830 BUMPUSDA_RS01835 BUMPUSDA_CDS00235 BUMPUSDA_RS01835 396076 397263 - nicotinate phosphoribosyltransferase catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01835 BUMPUSDA_RS01840 BUMPUSDA_CDS00234 BUMPUSDA_RS01840 397488 398501 + dihydroorotate dehydrogenase catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01840 BUMPUSDA_RS01845 BUMPUSDA_CDS00233 rlmL rlmL 398597 400699 + 23S rRNA methyltransferase catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01845 BUMPUSDA_RS01850 BUMPUSDA_CDS00232 BUMPUSDA_RS01850 400723 402540 + ABC transporter ATPase Uup%3B in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity%3B mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01850 BUMPUSDA_RS01855 BUMPUSDA_CDS00231 BUMPUSDA_RS01855 402578 403510 - sulfurtransferase gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01855 BUMPUSDA_RS01860 BUMPUSDA_CDS00230 BUMPUSDA_RS01860 403577 406447 - valine--tRNA ligase gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01860 BUMPUSDA_RS01865 BUMPUSDA_CDS00229 BUMPUSDA_RS01865 406534 408033 - multifunctional aminopeptidase A catalyzes the removal of N-terminal amino acids preferably from various peptides%3B a cyteinylglycinase%2C transcription regulator and site-specific recombination factor gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01865 BUMPUSDA_RS01870 BUMPUSDA_CDS00228 BUMPUSDA_RS01870 408379 409395 + ornithine carbamoyltransferase catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01870 BUMPUSDA_RS01875 BUMPUSDA_CDS00227 BUMPUSDA_RS01875 409538 410467 + aspartate carbamoyltransferase gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01875 BUMPUSDA_RS01880 BUMPUSDA_CDS00226 BUMPUSDA_RS01880 410478 410939 + aspartate carbamoyltransferase regulatory subunit involved in the allosteric regulation of aspartate carbamoyltransferase gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01880 BUMPUSDA_RS01885 BUMPUSDA_CDS00225 BUMPUSDA_RS01885 410983 411369 + RutC family protein BU371 gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01885 BUMPUSDA_RS01890 BUMPUSDA_CDS00224 BUMPUSDA_RS01890 411456 413246 - cold-shock protein gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01890 BUMPUSDA_RS01895 BUMPUSDA_CDS00223 BUMPUSDA_RS01895 413672 415795 - polyribonucleotide nucleotidyltransferase gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01895 BUMPUSDA_RS01900 BUMPUSDA_CDS00222 BUMPUSDA_RS01900 415998 416267 - 30S ribosomal protein S15 gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01900 BUMPUSDA_RS01905 BUMPUSDA_CDS00221 BUMPUSDA_RS01905 416374 417306 - pseudouridine synthase gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01905 BUMPUSDA_RS01910 BUMPUSDA_CDS00220 BUMPUSDA_RS01910 417322 417705 - ribosome-binding factor A gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01910 BUMPUSDA_RS01915 BUMPUSDA_CDS00219 infB infB 417753 420398 - translation initiation factor IF-2 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01915 BUMPUSDA_RS01920 BUMPUSDA_CDS00218 nusA nusA 420416 421903 - transcription termination factor NusA modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01920 BUMPUSDA_RS01925 BUMPUSDA_CDS00217 BUMPUSDA_RS01925 422297 422626 - preprotein translocase subunit SecG gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01925 BUMPUSDA_RS01930 BUMPUSDA_CDS00216 glmM glmM 422875 424209 - phosphoglucosamine mutase catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01930 BUMPUSDA_RS01935 BUMPUSDA_CDS00215 hflB hflB 424365 426200 - ATP-dependent metalloprotease inner membrane metalloprotease%3B may be involved in degradation of aberrant cytoplasmic and membrane proteins gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01935 BUMPUSDA_RS01940 BUMPUSDA_CDS00214 BUMPUSDA_RS01940 426268 426888 - ribosomal RNA large subunit methyltransferase E gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01940 BUMPUSDA_RS01945 BUMPUSDA_CDS00213 greA greA 426947 427426 - transcription elongation factor GreA necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01945 BUMPUSDA_RS01950 BUMPUSDA_CDS00212 BUMPUSDA_RS01950 427910 428176 + hypothetical protein gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01950 BUMPUSDA_RS01955 BUMPUSDA_CDS00211 BUMPUSDA_RS01955 428223 429476 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01955 BUMPUSDA_RS01960 BUMPUSDA_CDS00210 rplU rplU 429567 429911 + 50S ribosomal protein L21 gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01960 BUMPUSDA_RS01965 BUMPUSDA_CDS00209 rpmA rpmA 429901 430155 + 50S ribosomal protein L27 involved in the peptidyltransferase reaction during translation gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01965 BUMPUSDA_RS01970 BUMPUSDA_CDS00208 BUMPUSDA_RS01970 430241 431263 + GTPase CgtA gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01970 BUMPUSDA_RS01975 BUMPUSDA_CDS00207 BUMPUSDA_RS01975 431316 431708 - 30S ribosomal protein S9 gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01975 BUMPUSDA_RS01980 BUMPUSDA_CDS00206 BUMPUSDA_RS01980 431731 432159 - 50S ribosomal protein L13 gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01980 BUMPUSDA_RS01985 BUMPUSDA_CDS00205 BUMPUSDA_RS01985 432394 433551 + prephenate dehydratase gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01985 BUMPUSDA_RS01990 BUMPUSDA_CDS00204 BUMPUSDA_RS01990 433703 435061 + signal recognition particle protein gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01990 BUMPUSDA_RS01995 BUMPUSDA_CDS00203 BUMPUSDA_RS01995 435173 435427 + 30S ribosomal protein S16 gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS01995 BUMPUSDA_RS02000 BUMPUSDA_CDS00202 BUMPUSDA_RS02000 435421 435948 + 16S rRNA processing protein RimM gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02000 BUMPUSDA_RS02005 BUMPUSDA_CDS00201 trmD trmD 435963 436724 + tRNA (guanine(37)-N(1))-methyltransferase methylates guanosine-37 in various tRNAs%3B uses S-adenosyl-L-methionine to transfer methyl group to tRNA gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02005 BUMPUSDA_RS02010 BUMPUSDA_CDS00200 BUMPUSDA_RS02010 436765 437112 + 50S ribosomal protein L19 gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02010 BUMPUSDA_RS02015 BUMPUSDA_CDS00199 tldD tldD 437216 438670 - protease TldD responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17%2C an exported protein that targets the essential topoisomerase II DNA gyrase%3B degrades the E. coli plasmid F-encoded CcdA gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02015 BUMPUSDA_RS02020 BUMPUSDA_CDS00198 BUMPUSDA_RS02020 438801 439244 + 3-dehydroquinate dehydratase gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02020 BUMPUSDA_RS02025 BUMPUSDA_CDS00197 BUMPUSDA_RS02025 439359 439655 - Fis family transcriptional regulator gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02025 BUMPUSDA_RS02030 BUMPUSDA_CDS00196 rluD rluD 439782 440729 - 23S rRNA pseudouridylate synthase responsible for synthesis of pseudouridine from uracil at positions 1911%2C 1915 and 1917 in 23S ribosomal RNA gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02030 BUMPUSDA_RS02035 BUMPUSDA_CDS00195 BUMPUSDA_RS02035 440852 441607 + outer membrane protein assembly factor BamD gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02035 BUMPUSDA_RS02040 BUMPUSDA_CDS00194 BUMPUSDA_RS02040 441794 444439 + alanyl-tRNA synthetase gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02040 BUMPUSDA_RS02045 BUMPUSDA_CDS00193 BUMPUSDA_RS02045 444602 444787 + carbon storage regulator affects carbohydrate metabolism%3B has regulatory role in many processes gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02045 BUMPUSDA_RS02050 BUMPUSDA_tRNA6 BUMPUSDA_RS02050 444951 445043 + tRNA-Ser tRNA gene410 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02050 BUMPUSDA_RS02055 BUMPUSDA_tRNA7 BUMPUSDA_RS02055 445067 445140 + tRNA-Arg tRNA gene411 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02055 BUMPUSDA_RS02060 BUMPUSDA_CDS00192 BUMPUSDA_RS02060 445251 446810 + glutamate--cysteine ligase involved in the first step of glutathione biosynthesis gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02060 BUMPUSDA_RS02065 BUMPUSDA_CDS00191 BUMPUSDA_RS02065 446944 448083 - S-adenosylmethionine synthetase catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02065 BUMPUSDA_RS02070 BUMPUSDA_CDS00190 BUMPUSDA_RS02070 448368 449048 + DNA endonuclease I gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02070 BUMPUSDA_RS02075 BUMPUSDA_CDS00189 BUMPUSDA_RS02075 449053 449796 + 16S rRNA methyltransferase gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02075 BUMPUSDA_RS02080 BUMPUSDA_CDS00188 BUMPUSDA_RS02080 449841 450431 - 5-formyltetrahydrofolate cyclo-ligase gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02080 BUMPUSDA_RS02085 BUMPUSDA_CDS00187 BUMPUSDA_RS02085 450441 451109 - ribose-5-phosphate isomerase A gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02085 BUMPUSDA_RS02090 BUMPUSDA_tRNA21 BUMPUSDA_RS02090 451295 451369 - tRNA-Gln tRNA gene418 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02090 BUMPUSDA_RS02095 BUMPUSDA_tRNA20 BUMPUSDA_RS02095 451395 451476 - tRNA-Leu tRNA gene419 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02095 BUMPUSDA_RS02100 BUMPUSDA_tRNA19 BUMPUSDA_RS02100 451482 451558 - tRNA-Met tRNA gene420 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02100 BUMPUSDA_RS02105 BUMPUSDA_CDS00186 BUMPUSDA_RS02105 451693 453378 + glutamine--tRNA ligase catalyzes a two-step reaction%2C first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02105 BUMPUSDA_RS02110 BUMPUSDA_CDS00185 pyrG pyrG 453635 455308 + CTP synthase CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02110 BUMPUSDA_RS02115 BUMPUSDA_CDS00184 eno eno 455319 456614 + enolase catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02115 BUMPUSDA_RS02120 BUMPUSDA_CDS00183 BUMPUSDA_RS02120 456708 457367 + 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02120 BUMPUSDA_RS02125 BUMPUSDA_CDS00182 BUMPUSDA_RS02125 457389 457757 - 6-carboxy-5%2C6%2C7%2C8-tetrahydropterin synthase gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02125 BUMPUSDA_RS02130 BUMPUSDA_CDS00181 BUMPUSDA_RS02130 457794 458792 - peptidoglycan-binding protein LysM gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02130 BUMPUSDA_RS02135 BUMPUSDA_CDS00180 BUMPUSDA_RS02135 458822 459304 - 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02135 BUMPUSDA_RS02140 BUMPUSDA_CDS00179 BUMPUSDA_RS02140 459319 460035 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02140 BUMPUSDA_RS02145 BUMPUSDA_CDS00178 BUMPUSDA_RS02145 460057 460275 - cell division protein FtsB gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02145 BUMPUSDA_RS02150 BUMPUSDA_CDS00177 BUMPUSDA_RS02150 460320 460940 - adenylylsulfate kinase converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02150 BUMPUSDA_RS02155 BUMPUSDA_CDS00176 cysN cysN 460942 462363 - sulfate adenylyltransferase subunit 1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step%3B forms a heterodimer with CysD%3B part of the GTP-binding elongation factor family CysN/NodQ gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02155 BUMPUSDA_RS02160 BUMPUSDA_CDS00175 BUMPUSDA_RS02160 462386 463294 - sulfate adenylyltransferase subunit 2 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02160 BUMPUSDA_RS02165 BUMPUSDA_CDS00174 BUMPUSDA_RS02165 463357 464727 - sirohydrochlorin ferrochelatase gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02165 BUMPUSDA_RS02170 BUMPUSDA_CDS00173 BUMPUSDA_RS02170 464889 465629 - phosphoadenosine phosphosulfate reductase gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02170 BUMPUSDA_RS02175 BUMPUSDA_CDS00172 BUMPUSDA_RS02175 465645 467354 - sulfite reductase subunit beta hemoprotein%3B NADPH dependent%3B with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02175 BUMPUSDA_RS02180 BUMPUSDA_CDS00171 cysJ cysJ 467354 469162 - sulfite reductase subunit alpha catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate%3B a flavoprotein with flavin reductase activity gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02180 BUMPUSDA_RS02185 BUMPUSDA_CDS00170 BUMPUSDA_RS02185 469259 471670 - DNA mismatch repair protein MutS gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02185 BUMPUSDA_RS02190 BUMPUSDA_CDS00169 BUMPUSDA_RS02190 471847 472485 + thiol:disulfide interchange protein gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02190 BUMPUSDA_RS02195 BUMPUSDA_CDS00168 BUMPUSDA_RS02195 472654 473529 + 5'-3' exonuclease gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02195 BUMPUSDA_RS02200 BUMPUSDA_CDS00167 BUMPUSDA_RS02200 473535 474146 - GTP-binding protein gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02200 BUMPUSDA_RS02205 BUMPUSDA_CDS00166 BUMPUSDA_RS02205 474317 476137 + GTP-binding protein gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02205 BUMPUSDA_RS02210 BUMPUSDA_CDS00165 BUMPUSDA_RS02210 476251 476874 - guanylate kinase gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02210 BUMPUSDA_RS02215 BUMPUSDA_CDS00164 BUMPUSDA_RS02215 476945 477910 - tRNA-modifying protein gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02215 BUMPUSDA_RS02220 BUMPUSDA_CDS00163 BUMPUSDA_RS02220 478201 479133 + peptide chain release factor 2 gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02220 BUMPUSDA_RS02225 BUMPUSDA_CDS00162 lysS lysS 479144 480661 + lysine--tRNA ligase class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02225 BUMPUSDA_RS02230 BUMPUSDA_CDS00161 BUMPUSDA_RS02230 480736 481983 + diaminopimelate decarboxylase catalyzes the decarboxylation of diaminopimelate into lysine%3B pyridoxal phosphate(PLP)-binding gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02230 BUMPUSDA_RS02235 BUMPUSDA_CDS00160 BUMPUSDA_RS02235 482057 482953 + prolipoprotein diacylglyceryl transferase transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02235 BUMPUSDA_RS02240 BUMPUSDA_CDS00159 BUMPUSDA_RS02240 482916 483710 + thymidylate synthase gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02240 BUMPUSDA_RS02245 BUMPUSDA_CDS00158 BUMPUSDA_RS02245 483771 485090 + dimethylallyladenosine tRNA methylthiotransferase catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02245 BUMPUSDA_RS02250 BUMPUSDA_CDS00157 BUMPUSDA_RS02250 485109 485564 + 16S rRNA maturation RNase YbeY gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02250 BUMPUSDA_RS02255 BUMPUSDA_CDS00156 BUMPUSDA_RS02255 485650 486528 + magnesium/cobalt efflux protein CorC involved in the transport of magnesium and cobalt ions gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02255 BUMPUSDA_RS02260 BUMPUSDA_CDS00155 leuS leuS 486651 489161 + leucyl-tRNA synthetase leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02260 BUMPUSDA_RS02265 BUMPUSDA_CDS00154 BUMPUSDA_RS02265 489200 490207 + DNA polymerase III subunit delta gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02265 BUMPUSDA_RS02270 BUMPUSDA_CDS00153 BUMPUSDA_RS02270 490270 490913 + nicotinate-nucleotide adenylyltransferase gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02270 BUMPUSDA_RS02275 BUMPUSDA_CDS00152 BUMPUSDA_RS02275 490982 491218 + sulfurtransferase gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02275 BUMPUSDA_RS02280 BUMPUSDA_CDS00151 BUMPUSDA_RS02280 491358 492470 - aspartate-semialdehyde dehydrogenase catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02280 BUMPUSDA_RS02285 BUMPUSDA_CDS00150 BUMPUSDA_RS02285 492818 493408 + antibiotic transporter gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02285 BUMPUSDA_RS02290 BUMPUSDA_CDS00149 BUMPUSDA_RS02290 493602 494780 + phosphoglycerate kinase gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02290 BUMPUSDA_RS02295 BUMPUSDA_CDS00148 BUMPUSDA_RS02295 494850 495893 + fructose-bisphosphate aldolase catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1%2C6%2C bisphosphate gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02295 BUMPUSDA_RS02300 BUMPUSDA_CDS00147 BUMPUSDA_RS02300 496042 496887 + mechanosensitive ion channel protein MscS participates in the regulation of osmotic pressure changes within the cel gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02300 BUMPUSDA_RS02305 BUMPUSDA_CDS00146 BUMPUSDA_RS02305 496894 500052 + exodeoxyribonuclease V subunit gamma gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02305 BUMPUSDA_RS02310 BUMPUSDA_CDS00145 BUMPUSDA_RS02310 500061 503564 + exodeoxyribonuclease V subunit beta gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02310 BUMPUSDA_RS02315 BUMPUSDA_CDS00144 BUMPUSDA_RS02315 503588 505417 + exodeoxyribonuclease V subunit alpha gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02315 BUMPUSDA_RS02320 BUMPUSDA_CDS00143 BUMPUSDA_RS02320 505459 506787 - N-acetylglutamate synthase catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02320 BUMPUSDA_RS02325 BUMPUSDA_tRNA18 BUMPUSDA_RS02325 506963 507039 - tRNA-Met tRNA gene465 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02325 BUMPUSDA_RS02330 BUMPUSDA_CDS00142 BUMPUSDA_RS02330 507180 508250 + murein transglycosylase gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02330 BUMPUSDA_RS02335 BUMPUSDA_CDS00141 ribH ribH 508290 508766 + 6%2C7-dimethyl-8-ribityllumazine synthase RibE%3B 6%2C7-diimethyl-8-ribityllumazine synthase%3B DMRL synthase%3B lumazine synthase%3B beta subunit of riboflavin synthase%3B condenses 5-amino-6-(1'-D)-ribityl-amino-2%2C4(1H%2C3H)-pyrimidinedione with L-3%2C4-dihydrohy-2-butanone-4-phosphate to generate 6%2C6-dimethyl-8-lumazine (DMRL)%3B riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12)%3B involved in the last steps of riboflavin biosynthesis%3B forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli%3B in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02335 BUMPUSDA_RS02340 BUMPUSDA_CDS00140 BUMPUSDA_RS02340 508817 509788 + thiamine monophosphate kinase catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02340 BUMPUSDA_RS02345 BUMPUSDA_CDS00139 BUMPUSDA_RS02345 509816 510259 + diaminohydroxyphosphoribosylamino-pyrimidine deaminase gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02345 BUMPUSDA_RS02350 BUMPUSDA_CDS00138 BUMPUSDA_RS02350 510302 510925 + 5-amino-6-(5-phosphoribosylamino)uracil reductase gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02350 BUMPUSDA_RS02355 BUMPUSDA_CDS00137 BUMPUSDA_RS02355 510954 511382 + antitermination protein NusB gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02355 BUMPUSDA_RS02360 BUMPUSDA_CDS00136 BUMPUSDA_RS02360 511451 513280 - 1-deoxy-D-xylulose-5-phosphate synthase catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02360 BUMPUSDA_RS02365 BUMPUSDA_CDS00135 BUMPUSDA_RS02365 513300 514187 - geranyl transferase gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02365 BUMPUSDA_RS02370 BUMPUSDA_CDS00134 BUMPUSDA_RS02370 514247 515428 - MFS transporter gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02370 BUMPUSDA_RS02375 BUMPUSDA_CDS00133 BUMPUSDA_RS02375 515499 515843 + sulfurtransferase TusE gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02375 BUMPUSDA_RS02380 BUMPUSDA_CDS00132 BUMPUSDA_RS02380 515848 516702 - protoheme IX farnesyltransferase gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02380 BUMPUSDA_RS02385 BUMPUSDA_CDS00131 BUMPUSDA_RS02385 516722 517048 - cytochrome O ubiquinol oxidase gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02385 BUMPUSDA_RS02390 BUMPUSDA_CDS00130 BUMPUSDA_RS02390 517048 517665 - cytochrome o ubiquinol oxidase subunit III gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02390 BUMPUSDA_RS02395 BUMPUSDA_CDS00129 BUMPUSDA_RS02395 517662 519659 - cytochrome o ubiquinol oxidase subunit I gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02395 BUMPUSDA_RS02400 BUMPUSDA_CDS00128 BUMPUSDA_RS02400 519664 520584 - cytochrome o ubiquinol oxidase subunit II gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02400 BUMPUSDA_RS02405 BUMPUSDA_CDS00127 BUMPUSDA_RS02405 520833 521144 + hypothetical protein gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02405 BUMPUSDA_RS02410 BUMPUSDA_CDS00126 BUMPUSDA_RS02410 521283 522593 + trigger factor gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02410 BUMPUSDA_RS02415 BUMPUSDA_CDS00125 BUMPUSDA_RS02415 522741 523367 + Clp protease ClpP gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02415 BUMPUSDA_RS02420 BUMPUSDA_CDS00124 BUMPUSDA_RS02420 523470 524753 + ATP-dependent Clp protease ATP-binding subunit ClpX gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02420 BUMPUSDA_RS02425 BUMPUSDA_CDS00123 BUMPUSDA_RS02425 524940 527288 + DNA-binding protein gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02425 BUMPUSDA_RS02430 BUMPUSDA_CDS00122 BUMPUSDA_RS02430 527396 529267 + peptidylprolyl isomerase gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02430 BUMPUSDA_RS02435 BUMPUSDA_CDS00121 BUMPUSDA_RS02435 529349 530041 - 7-cyano-7-deazaguanine synthase YbaX%3B catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)%2C as one of the early reactions of quenosine biosynthesis%3B quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn%2C Asp%2C Tyr%2C and His gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02435 BUMPUSDA_RS02440 BUMPUSDA_CDS00120 BUMPUSDA_RS02440 530244 531989 + multidrug ABC transporter ATP-binding protein gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02440 BUMPUSDA_RS02445 BUMPUSDA_CDS00119 BUMPUSDA_RS02445 532013 533755 + multidrug resistance-like ATP-binding protein MdlB gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02445 BUMPUSDA_RS02450 BUMPUSDA_CDS00118 BUMPUSDA_RS02450 534067 535152 + DNA polymerase III subunit gamma gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02450 BUMPUSDA_RS02455 BUMPUSDA_RS02455 BUMPUSDA_RS02455 535203 535829 + hypothetical protein gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02455 BUMPUSDA_RS02460 BUMPUSDA_CDS00116 BUMPUSDA_RS02460 535866 536195 + hypothetical protein gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02460 BUMPUSDA_RS02465 BUMPUSDA_CDS00115 BUMPUSDA_RS02465 536254 538131 + heat-shock protein Hsp90 molecular chaperone gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02465 BUMPUSDA_RS02470 BUMPUSDA_CDS00114 adk adk 538226 538879 + adenylate kinase essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02470 BUMPUSDA_RS02475 BUMPUSDA_tRNA17 BUMPUSDA_RS02475 538908 538981 - tRNA-Arg tRNA gene495 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02475 BUMPUSDA_RS02480 BUMPUSDA_CDS00113 BUMPUSDA_RS02480 539145 540002 + methenyltetrahydrofolate cyclohydrolase gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02480 BUMPUSDA_RS02485 BUMPUSDA_CDS00112 cysS cysS 540027 541412 - cysteinyl-tRNA synthetase catalyzes a two-step reaction%3B charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02485 BUMPUSDA_RS02490 BUMPUSDA_CDS00111 BUMPUSDA_RS02490 541711 541974 + hypothetical protein gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02490 BUMPUSDA_RS02495 BUMPUSDA_CDS00110 BUMPUSDA_RS02495 542091 542300 - cold-shock protein CspE gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02495 BUMPUSDA_RS02500 BUMPUSDA_rRNA3 BUMPUSDA_RS02500 542501 542616 - 5S ribosomal RNA rRNA gene500 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02500 BUMPUSDA_RS02505 BUMPUSDA_rRNA1 BUMPUSDA_RS02505 542702 545647 - 23S ribosomal RNA rRNA gene501 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02505 BUMPUSDA_RS02510 BUMPUSDA_tRNA16 BUMPUSDA_RS02510 545807 545879 - tRNA-Glu tRNA gene502 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02510 BUMPUSDA_RS02515 BUMPUSDA_CDS00109 BUMPUSDA_RS02515 546043 546876 - shikimate dehydrogenase gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02515 BUMPUSDA_RS02520 BUMPUSDA_CDS00108 BUMPUSDA_RS02520 546869 547441 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein involved in the biosynthesis of the threonylcarbamoyladenosine (t6A) residue at position 37 of ANN-decoding tRNAs gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02520 BUMPUSDA_RS02525 BUMPUSDA_CDS00107 BUMPUSDA_RS02525 547496 547969 - hypothetical protein gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02525 BUMPUSDA_RS02530 BUMPUSDA_CDS00106 BUMPUSDA_RS02530 548213 548725 + peptide deformylase gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02530 BUMPUSDA_RS02535 BUMPUSDA_CDS00105 fmt fmt 548741 549685 + methionyl-tRNA formyltransferase modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation%3B inactivation of this gene in Escherichia coli severely impairs growth gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02535 BUMPUSDA_RS02540 BUMPUSDA_CDS00104 BUMPUSDA_RS02540 549808 550200 - 50S ribosomal protein L17 gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02540 BUMPUSDA_RS02545 BUMPUSDA_CDS00103 BUMPUSDA_RS02545 550248 551237 - DNA-directed RNA polymerase subunit alpha catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02545 BUMPUSDA_RS02550 BUMPUSDA_CDS00102 BUMPUSDA_RS02550 551267 551887 - 30S ribosomal protein S4 gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02550 BUMPUSDA_RS02555 BUMPUSDA_CDS00101 BUMPUSDA_RS02555 551914 552306 - 30S ribosomal protein S11 gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02555 BUMPUSDA_RS02560 BUMPUSDA_CDS00100 BUMPUSDA_RS02560 552324 552680 - 30S ribosomal protein S13 gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02560 BUMPUSDA_RS02565 BUMPUSDA_CDS00595 BUMPUSDA_RS02565 552763 552879 - 50S ribosomal protein L36 gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02565 BUMPUSDA_RS02570 BUMPUSDA_CDS00099 secY secY 552912 554231 - preprotein translocase subunit SecY forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02570 BUMPUSDA_RS02575 BUMPUSDA_CDS00098 BUMPUSDA_RS02575 554242 554676 - 50S ribosomal protein L15 gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02575 BUMPUSDA_RS02580 BUMPUSDA_CDS00097 rpmD rpmD 554681 554860 - 50S ribosomal protein L30 L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7 gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02580 BUMPUSDA_RS02585 BUMPUSDA_CDS00096 BUMPUSDA_RS02585 554871 555374 - 30S ribosomal protein S5 gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02585 BUMPUSDA_RS02590 BUMPUSDA_CDS00095 BUMPUSDA_RS02590 555390 555758 - 50S ribosomal protein L18 gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02590 BUMPUSDA_RS02595 BUMPUSDA_CDS00094 BUMPUSDA_RS02595 555760 556296 - 50S ribosomal protein L6 gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02595 BUMPUSDA_RS02600 BUMPUSDA_CDS00093 BUMPUSDA_RS02600 556312 556704 - 30S ribosomal protein S8 gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02600 BUMPUSDA_RS02605 BUMPUSDA_CDS00092 rpsN rpsN 556735 557040 - 30S ribosomal protein S14 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group do not appear to have the zinc-binding motif gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02605 BUMPUSDA_RS02610 BUMPUSDA_CDS00091 BUMPUSDA_RS02610 557055 557594 - 50S ribosomal protein L5 gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02610 BUMPUSDA_RS02615 BUMPUSDA_CDS00090 rplX rplX 557612 557923 - 50S ribosomal protein L24 assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02615 BUMPUSDA_RS02620 BUMPUSDA_CDS00089 BUMPUSDA_RS02620 557949 558317 - 50S ribosomal protein L14 gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02620 BUMPUSDA_RS02625 BUMPUSDA_CDS00088 BUMPUSDA_RS02625 558457 558711 - 30S ribosomal protein S17 gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02625 BUMPUSDA_RS02630 BUMPUSDA_CDS00087 BUMPUSDA_RS02630 558708 558905 - 50S ribosomal protein L29 one of the stabilizing components for the large ribosomal subunit gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02630 BUMPUSDA_RS02635 BUMPUSDA_CDS00086 BUMPUSDA_RS02635 558905 559315 - 50S ribosomal protein L16 gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02635 BUMPUSDA_RS02640 BUMPUSDA_CDS00085 BUMPUSDA_RS02640 559351 560052 - 30S ribosomal protein S3 gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02640 BUMPUSDA_RS02645 BUMPUSDA_CDS00084 BUMPUSDA_RS02645 560071 560403 - 50S ribosomal protein L22 gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02645 BUMPUSDA_RS02650 BUMPUSDA_CDS00083 BUMPUSDA_RS02650 560425 560703 - 30S ribosomal protein S19 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02650 BUMPUSDA_RS02655 BUMPUSDA_CDS00082 BUMPUSDA_RS02655 560726 561547 - 50S ribosomal protein L2 gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02655 BUMPUSDA_RS02660 BUMPUSDA_CDS00081 BUMPUSDA_RS02660 561562 561864 - 50S ribosomal protein L23 gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02660 BUMPUSDA_RS02665 BUMPUSDA_CDS00080 rplD rplD 561861 562466 - 50S ribosomal protein L4 L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02665 BUMPUSDA_RS02670 BUMPUSDA_CDS00079 BUMPUSDA_RS02670 562486 563115 - 50S ribosomal protein L3 gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02670 BUMPUSDA_RS02675 BUMPUSDA_CDS00078 rpsJ rpsJ 563146 563457 - 30S ribosomal protein S10 NusE%3B involved in assembly of the 30S subunit%3B in the ribosome%2C this protein is involved in the binding of tRNA%3B in Escherichia coli this protein was also found to be involved in transcription antitermination%3B NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination%3B binding of NusB/S10 to boxA nucleates assembly of the antitermination complex gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02675 BUMPUSDA_RS02680 BUMPUSDA_CDS00077 tuf tuf 563780 564964 - elongation factor Tu EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02680 BUMPUSDA_RS02685 BUMPUSDA_CDS00076 fusA fusA 565033 567141 - elongation factor G EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02685 BUMPUSDA_RS02690 BUMPUSDA_CDS00075 BUMPUSDA_RS02690 567229 567699 - 30S ribosomal protein S7 gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02690 BUMPUSDA_RS02695 BUMPUSDA_CDS00074 BUMPUSDA_RS02695 567762 568136 - 30S ribosomal protein S12 gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02695 BUMPUSDA_RS02700 BUMPUSDA_CDS00073 BUMPUSDA_RS02700 568260 568547 - sulfur transfer complex subunit TusB in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02700 BUMPUSDA_RS02705 BUMPUSDA_CDS00072 BUMPUSDA_RS02705 568561 568920 - sulfur relay protein TusC in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur transfer that results in thiouridation to U34 position in some tRNAs gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02705 BUMPUSDA_RS02710 BUMPUSDA_CDS00071 BUMPUSDA_RS02710 568939 569325 - sulfurtransferase gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02710 BUMPUSDA_RS02715 BUMPUSDA_CDS00070 BUMPUSDA_RS02715 569406 570170 - peptidylprolyl isomerase gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02715 BUMPUSDA_RS02720 BUMPUSDA_CDS00069 BUMPUSDA_RS02720 570386 571603 - acetylornithine aminotransferase gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02720 BUMPUSDA_RS02725 BUMPUSDA_CDS00068 BUMPUSDA_RS02725 571925 573094 + transporter gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02725 BUMPUSDA_RS02730 BUMPUSDA_CDS00067 BUMPUSDA_RS02730 573162 574184 - tryptophan--tRNA ligase catalyzes a two-step reaction%2C first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02730 BUMPUSDA_RS02735 BUMPUSDA_CDS00066 BUMPUSDA_RS02735 574207 574893 - ribulose-phosphate 3-epimerase gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02735 BUMPUSDA_RS02740 BUMPUSDA_CDS00065 aroB aroB 575729 576811 - 3-dehydroquinate synthase catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02740 BUMPUSDA_RS02745 BUMPUSDA_CDS00064 aroK aroK 576853 577374 - shikimate kinase type I enzyme similar to type II but differentially regulated%3B major shikimate kinase in fully repressed cells%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02745 BUMPUSDA_RS02750 BUMPUSDA_tRNA8 BUMPUSDA_RS02750 577843 577927 + tRNA-Ser tRNA gene550 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02750 BUMPUSDA_RS02755 BUMPUSDA_CDS00063 BUMPUSDA_RS02755 577961 578674 - purine nucleoside phosphorylase gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02755 BUMPUSDA_RS02760 BUMPUSDA_CDS00062 BUMPUSDA_RS02760 578722 579945 - phosphopentomutase gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02760 BUMPUSDA_RS02765 BUMPUSDA_CDS00061 prfC prfC 580001 581596 - peptide chain release factor 3 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02765 BUMPUSDA_RS02770 BUMPUSDA_CDS00060 ansA ansA 581929 582894 + cytoplasmic asparaginase I converts asparagine to aspartate and ammonia gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02770 BUMPUSDA_RS02775 BUMPUSDA_CDS00059 BUMPUSDA_RS02775 582910 583500 - fe/S biogenesis protein nfuA cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02775 BUMPUSDA_RS02780 BUMPUSDA_CDS00058 BUMPUSDA_RS02780 583724 584257 - single-stranded DNA-binding protein gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02780 BUMPUSDA_RS02785 BUMPUSDA_CDS00057 BUMPUSDA_RS02785 584765 586162 + DNA helicase unwinds double stranded DNA gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02785 BUMPUSDA_RS02790 BUMPUSDA_CDS00056 BUMPUSDA_RS02790 586503 587462 + glutathione synthetase catalyzes the second step in the glutathione biosynthesis pathway%2C where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine %3D ADP + phosphate + glutathione gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02790 BUMPUSDA_RS02795 BUMPUSDA_CDS00055 BUMPUSDA_RS02795 587473 587892 + Holliday junction DNA helicase similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02795 BUMPUSDA_RS02800 BUMPUSDA_CDS00054 BUMPUSDA_RS02800 587968 588594 + YggS family pyridoxal phosphate enzyme gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02800 BUMPUSDA_RS02805 BUMPUSDA_CDS00053 BUMPUSDA_RS02805 588612 589742 + coproporphyrinogen III oxidase gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02805 BUMPUSDA_RS02810 BUMPUSDA_CDS00052 trmB trmB 589753 590472 - tRNA (guanine-N7)-methyltransferase tRNA (guanine-N(7)-)-methyltransferase%3B catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02810 BUMPUSDA_RS02815 BUMPUSDA_CDS00051 BUMPUSDA_RS02815 590584 591636 + A/G-specific adenine glycosylase gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02815 BUMPUSDA_RS02820 BUMPUSDA_CDS00050 BUMPUSDA_RS02820 591655 591888 + iron transporter gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02820 BUMPUSDA_RS02825 BUMPUSDA_CDS00049 BUMPUSDA_RS02825 591971 592759 + glutamate racemase gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02825 BUMPUSDA_RS02830 BUMPUSDA_CDS00048 BUMPUSDA_RS02830 592735 594198 - exonuclease gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02830 BUMPUSDA_RS02835 BUMPUSDA_CDS00047 BUMPUSDA_RS02835 594274 594582 + hypothetical protein gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02835 BUMPUSDA_RS02840 BUMPUSDA_tRNA15 BUMPUSDA_RS02840 594604 594676 - tRNA-Asn tRNA gene568 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02840 BUMPUSDA_RS02845 BUMPUSDA_tRNA9 BUMPUSDA_RS02845 594826 594898 + tRNA-Met tRNA gene569 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02845 BUMPUSDA_RS02850 BUMPUSDA_CDS00046 pyrE pyrE 595030 595674 + orotate phosphoribosyltransferase involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02850 BUMPUSDA_RS02855 BUMPUSDA_CDS00045 BUMPUSDA_RS02855 595691 596149 - deoxyuridine 5'-triphosphate nucleotidohydrolase gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02855 BUMPUSDA_RS02860 BUMPUSDA_CDS00044 BUMPUSDA_RS02860 596194 596943 - adenosine-3'(2')%2C5'-bisphosphate nucleotidase catalyzes the formation of AMP from adenosine-3'%2C5'-bisphosphate gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02860 BUMPUSDA_RS02865 BUMPUSDA_CDS00043 rplI rplI 596989 597441 - 50S ribosomal protein L9 in Escherichia coli this protein is wrapped around the base of the L1 stalk gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02865 BUMPUSDA_RS02870 BUMPUSDA_CDS00042 rpsR rpsR 597487 597714 - 30S ribosomal protein S18 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02870 BUMPUSDA_RS02875 BUMPUSDA_CDS00041 BUMPUSDA_RS02875 597819 598160 - 30S ribosomal protein S6 gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02875 BUMPUSDA_RS02880 BUMPUSDA_CDS00040 BUMPUSDA_RS02880 598332 600506 - exoribonuclease R 3'-5'exoribonuclease that acts nonspecifically on poly(A)%2C poly(U) and ribosomal RNAs gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02880 BUMPUSDA_RS02885 BUMPUSDA_CDS00039 BUMPUSDA_RS02885 600563 601852 - adenylosuccinate synthetase catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02885 BUMPUSDA_RS02890 BUMPUSDA_CDS00038 BUMPUSDA_RS02890 601905 602834 - cell division protein FtsH with HflK inhibits proteolysis of lambda cII protein by FtsH gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02890 BUMPUSDA_RS02895 BUMPUSDA_CDS00037 BUMPUSDA_RS02895 602837 604057 - cell division protein FtsH with HflC inhibits proteolysis of lambda cII protein by FtsH gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02895 BUMPUSDA_RS02900 BUMPUSDA_CDS00036 miaA miaA 604215 605126 - tRNA dimethylallyltransferase IPP transferase%3B isopentenyltransferase%3B involved in tRNA modification%3B in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil%3B further tRNA modifications may occur%3B mutations in miaA result in defects in translation efficiency and fidelity gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02900 BUMPUSDA_RS02905 BUMPUSDA_CDS00035 BUMPUSDA_RS02905 605168 606934 - DNA mismatch repair protein MutL gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02905 BUMPUSDA_RS02910 BUMPUSDA_CDS00034 BUMPUSDA_RS02910 607034 608194 - mannitol-1-phosphate 5-dehydrogenase gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02910 BUMPUSDA_RS02915 BUMPUSDA_CDS00033 BUMPUSDA_RS02915 608239 610146 - PTS mannitol transporter subunit IICBA catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIC forms the translocation channel and contains the specific substrate-binding site%3B subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit%3B subunit IIB transfers the phosphoryl group to the substrate gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02915 BUMPUSDA_RS02920 BUMPUSDA_CDS00032 pgi pgi 610315 611964 - glucose-6-phosphate isomerase functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02920 BUMPUSDA_RS02925 BUMPUSDA_CDS00031 BUMPUSDA_RS02925 612256 612804 + oligoribonuclease 3'-5' exoribonuclease specific for small oligoribonuclotides gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02925 BUMPUSDA_RS02930 BUMPUSDA_tRNA10 BUMPUSDA_RS02930 612898 612973 + tRNA-Gly tRNA gene586 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02930 BUMPUSDA_RS02935 BUMPUSDA_RS02935 BUMPUSDA_RS02935 613093 613281 + hypothetical protein gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02935 BUMPUSDA_RS02940 BUMPUSDA_CDS00030 BUMPUSDA_RS02940 613299 613994 + N-acetylmuramoyl-L-alanine amidase gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02940 BUMPUSDA_RS02945 BUMPUSDA_CDS00029 rpmE rpmE 614092 614310 - 50S ribosomal protein L31 RpmE%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02945 BUMPUSDA_RS02950 BUMPUSDA_RS02950 BUMPUSDA_RS02950 614429 614677 + hypothetical protein gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02950 BUMPUSDA_RS02955 BUMPUSDA_CDS00027 BUMPUSDA_RS02955 614889 615419 + ATP-dependent protease subunit HslV heat shock protein involved in degradation of misfolded proteins gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02955 BUMPUSDA_RS02960 BUMPUSDA_CDS00026 hslU hslU 615431 616762 + ATP-dependent protease ATP-binding subunit HslU heat shock protein involved in degradation of misfolded proteins gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02960 BUMPUSDA_RS02965 BUMPUSDA_CDS00025 BUMPUSDA_RS02965 616968 617456 + heat-shock protein gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02965 BUMPUSDA_RS02970 BUMPUSDA_CDS00024 BUMPUSDA_RS02970 617566 618327 + ferredoxin-NADP reductase gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02970 BUMPUSDA_RS02975 BUMPUSDA_CDS00023 BUMPUSDA_RS02975 618344 619321 - lysyl-tRNA synthetase gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02975 BUMPUSDA_RS02980 BUMPUSDA_CDS00022 BUMPUSDA_RS02980 619442 619939 + phosphopantetheine adenylyltransferase gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02980 BUMPUSDA_RS02985 BUMPUSDA_RS02985 BUMPUSDA_RS02985 620010 621107 - hypothetical protein gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02985 BUMPUSDA_RS02990 BUMPUSDA_RS02990 BUMPUSDA_RS02990 621077 621457 - hypothetical protein gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02990 BUMPUSDA_RS02995 BUMPUSDA_CDS00019 BUMPUSDA_RS02995 621690 622430 + 16S rRNA methyltransferase gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS02995 BUMPUSDA_RS03000 BUMPUSDA_CDS00018 BUMPUSDA_RS03000 622518 623990 - phosphate transporter PitA involved in the transport of inorganic phosphate gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03000 BUMPUSDA_RS03005 BUMPUSDA_CDS00017 BUMPUSDA_RS03005 624129 625343 - hypothetical protein gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03005 BUMPUSDA_RS03010 BUMPUSDA_CDS00016 dapF dapF 625376 626230 - diaminopimelate epimerase involved in lysine biosynthesis%3B DAP epimerase%3B produces DL-diaminopimelate from LL-diaminopimelate gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03010 BUMPUSDA_RS03015 BUMPUSDA_CDS00015 BUMPUSDA_RS03015 626400 626744 + frataxin gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03015 BUMPUSDA_RS03020 BUMPUSDA_CDS00014 hemC hemC 626854 627798 + porphobilinogen deaminase transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03020 BUMPUSDA_RS03025 BUMPUSDA_RS03025 BUMPUSDA_RS03025 627795 628124 + uroporphyrinogen-III synthase gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03025 BUMPUSDA_RS03030 BUMPUSDA_tRNA14 BUMPUSDA_RS03030 628560 628636 - tRNA-Pro tRNA gene606 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03030 BUMPUSDA_RS03035 BUMPUSDA_tRNA13 BUMPUSDA_RS03035 628651 628725 - tRNA-His tRNA gene607 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03035 BUMPUSDA_RS03040 BUMPUSDA_tRNA12 BUMPUSDA_RS03040 628758 628831 - tRNA-Arg tRNA gene608 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03040 BUMPUSDA_RS03045 BUMPUSDA_CDS00012 rho rho 628960 630219 - transcription termination factor Rho An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03045 BUMPUSDA_RS03050 BUMPUSDA_CDS00011 trxA trxA 630360 630686 - thioredoxin gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03050 BUMPUSDA_RS03055 BUMPUSDA_CDS00010 BUMPUSDA_RS03055 630823 632844 - ATP-dependent DNA helicase Rep single-stranded DNA-dependent ATPase%3B initiates unwinding at a nick in the DNA%3B involved in DNA replication gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03055 BUMPUSDA_RS03060 BUMPUSDA_CDS00009 BUMPUSDA_RS03060 632916 634391 - ketol-acid reductoisomerase catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03060 BUMPUSDA_RS03065 BUMPUSDA_CDS00008 BUMPUSDA_RS03065 634438 636291 - dihydroxy-acid dehydratase catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03065 BUMPUSDA_RS03070 BUMPUSDA_tRNA11 BUMPUSDA_RS03070 636526 636602 - tRNA-Trp tRNA gene614 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03070 BUMPUSDA_RS03075 BUMPUSDA_CDS00007 BUMPUSDA_RS03075 636781 637995 + cysteine desulfurase gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03075 BUMPUSDA_RS03080 BUMPUSDA_CDS00006 BUMPUSDA_RS03080 638028 638408 + Fe-S cluster assembly scaffold IscU gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03080 BUMPUSDA_RS03085 BUMPUSDA_CDS00005 BUMPUSDA_RS03085 638503 639027 + CoA-transferase gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03085 BUMPUSDA_RS03090 BUMPUSDA_CDS00004 BUMPUSDA_RS03090 639037 640845 + molecular chaperone HscA gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03090 BUMPUSDA_RS03095 BUMPUSDA_CDS00003 BUMPUSDA_RS03095 640864 641199 + (2Fe-2S) ferredoxin gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03095 BUMPUSDA_RS03100 BUMPUSDA_CDS00002 BUMPUSDA_RS03100 641205 642566 - GTP-binding protein gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03100 BUMPUSDA_RS03105 BUMPUSDA_CDS00001 BUMPUSDA_RS03105 642655 643227 - hypothetical protein gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03105 BUMPUSDA_RS03115 BUMPUSDA_pLeu00001 BUMPUSDA_RS03115 348 1199 - replication protein RepA gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03115 BUMPUSDA_RS03120 BUMPUSDA_pLeu00002 BUMPUSDA_RS03120 1478 1981 + hypothetical protein gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03120 BUMPUSDA_RS03125 BUMPUSDA_pLeu00003 BUMPUSDA_RS03125 2126 2869 + replication protein RepA gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03125 BUMPUSDA_RS03130 BUMPUSDA_pLeu00004 BUMPUSDA_RS03130 3004 4563 + 2-isopropylmalate synthase gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03130 BUMPUSDA_RS03135 BUMPUSDA_pLeu00005 BUMPUSDA_RS03135 4651 5742 + 3-isopropylmalate dehydrogenase gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03135 BUMPUSDA_RS03140 BUMPUSDA_pLeu00006 BUMPUSDA_RS03140 5744 7156 + isopropylmalate isomerase dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03140 BUMPUSDA_RS03145 BUMPUSDA_pLeu00007 leuD leuD 7163 7792 + isopropylmalate isomerase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03145 BUMPUSDA_RS03150 BUMPUSDA_CDS00350 BUMPUSDA_RS03150 277477 278247 - hydroxyacylglutathione hydrolase catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione%3B plays an important role in cellular detoxification using glutathione gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03150 BUMPUSDA_RS03155 BUMPUSDA_RS03155 BUMPUSDA_RS03155 93378 93764 - bacterial RNase P ncRNA gene89 http://www.ncbi.nlm.nih.gov/gene/?term=BUMPUSDA_RS03155