locus-tag class description JOS54_RS00005 PF00308 Bacterial dnaA protein JOS54_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix JOS54_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JOS54_RS00010 PF02767 DNA polymerase III beta subunit, central domain JOS54_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JOS54_RS00020 PF02463 RecF/RecN/SMC N terminal domain JOS54_RS00025 PF01751 Toprim domain JOS54_RS00025 PF00204 DNA gyrase B JOS54_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus JOS54_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS54_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A JOS54_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller JOS54_RS00035 PF00011 Hsp20/alpha crystallin family JOS54_RS00040 PF02403 Seryl-tRNA synthetase N-terminal domain JOS54_RS00040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOS54_RS00050 PF14437 MafB19-like deaminase JOS54_RS00055 PF12169 DNA polymerase III subunits gamma and tau domain III JOS54_RS00060 PF02132 RecR protein JOS54_RS00060 PF13662 Toprim domain JOS54_RS00065 PF01268 Formate--tetrahydrofolate ligase JOS54_RS00075 PF01134 Glucose inhibited division protein A JOS54_RS00075 PF13932 GidA associated domain JOS54_RS00085 PF02527 rRNA small subunit methyltransferase G JOS54_RS00090 PF02195 ParB-like nuclease domain JOS54_RS00090 PF17762 HTH domain found in ParB protein JOS54_RS00095 PF13614 AAA domain JOS54_RS00100 PF02195 ParB-like nuclease domain JOS54_RS00100 PF17762 HTH domain found in ParB protein JOS54_RS00110 PF00119 ATP synthase A chain JOS54_RS00115 PF00137 ATP synthase subunit C JOS54_RS00120 PF00430 ATP synthase B/B' CF(0) JOS54_RS00125 PF00213 ATP synthase delta (OSCP) subunit JOS54_RS00130 PF00306 ATP synthase alpha/beta chain, C terminal domain JOS54_RS00130 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOS54_RS00130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS54_RS00135 PF00231 ATP synthase JOS54_RS00140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS54_RS00140 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOS54_RS00145 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JOS54_RS00145 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JOS54_RS00155 PF01926 50S ribosome-binding GTPase JOS54_RS00155 PF12631 MnmE helical domain JOS54_RS00155 PF10396 GTP-binding protein TrmE N-terminus JOS54_RS00160 PF01026 TatD related DNase JOS54_RS00165 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JOS54_RS00165 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JOS54_RS00170 PF13662 Toprim domain JOS54_RS00170 PF13331 Domain of unknown function (DUF4093) JOS54_RS00175 PF00398 Ribosomal RNA adenine dimethylase JOS54_RS00180 PF08544 GHMP kinases C terminal JOS54_RS00180 PF00288 GHMP kinases N terminal domain JOS54_RS00185 PF00132 Bacterial transferase hexapeptide (six repeats) JOS54_RS00185 PF00483 Nucleotidyl transferase JOS54_RS00190 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JOS54_RS00190 PF14572 Phosphoribosyl synthetase-associated domain JOS54_RS00195 PF00313 'Cold-shock' DNA-binding domain JOS54_RS00200 PF01588 Putative tRNA binding domain JOS54_RS00200 PF09334 tRNA synthetases class I (M) JOS54_RS00205 PF01513 ATP-NAD kinase JOS54_RS00210 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JOS54_RS00210 PF00367 phosphotransferase system, EIIB JOS54_RS00210 PF02378 Phosphotransferase system, EIIC JOS54_RS00215 PF01624 MutS domain I JOS54_RS00215 PF05190 MutS family domain IV JOS54_RS00215 PF05188 MutS domain II JOS54_RS00215 PF00488 MutS domain V JOS54_RS00215 PF05192 MutS domain III JOS54_RS00220 PF17755 UvrA DNA-binding domain JOS54_RS00220 PF17760 UvrA interaction domain JOS54_RS00225 PF02603 HPr Serine kinase N terminus JOS54_RS00225 PF07475 HPr Serine kinase C-terminal domain JOS54_RS00230 PF13419 Haloacid dehalogenase-like hydrolase JOS54_RS00235 PF03668 P-loop ATPase protein family JOS54_RS00240 PF01933 Uncharacterised protein family UPF0052 JOS54_RS00245 PF10298 WhiA N-terminal LAGLIDADG-like domain JOS54_RS00245 PF14527 WhiA LAGLIDADG-like domain JOS54_RS00245 PF02650 WhiA C-terminal HTH domain JOS54_RS00260 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JOS54_RS00260 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JOS54_RS00275 PF01406 tRNA synthetases class I (C) catalytic domain JOS54_RS00275 PF09190 DALR domain JOS54_RS00280 PF00636 Ribonuclease III domain JOS54_RS00285 PF08032 RNA 2'-O ribose methyltransferase substrate binding JOS54_RS00285 PF00588 SpoU rRNA Methylase family JOS54_RS00295 PF00471 Ribosomal protein L33 JOS54_RS00305 PF02357 Transcription termination factor nusG JOS54_RS00305 PF00467 KOW motif JOS54_RS00325 PF00298 Ribosomal protein L11, RNA binding domain JOS54_RS00325 PF03946 Ribosomal protein L11, N-terminal domain JOS54_RS00330 PF00687 Ribosomal protein L1p/L10e family JOS54_RS00340 PF00466 Ribosomal protein L10 JOS54_RS00345 PF00542 Ribosomal protein L7/L12 C-terminal domain JOS54_RS00345 PF16320 Ribosomal protein L7/L12 dimerisation domain JOS54_RS00350 PF05175 Methyltransferase small domain JOS54_RS00370 PF00005 ABC transporter JOS54_RS00375 PF04560 RNA polymerase Rpb2, domain 7 JOS54_RS00375 PF00562 RNA polymerase Rpb2, domain 6 JOS54_RS00375 PF04563 RNA polymerase beta subunit JOS54_RS00375 PF10385 RNA polymerase beta subunit external 1 domain JOS54_RS00375 PF04561 RNA polymerase Rpb2, domain 2 JOS54_RS00375 PF04565 RNA polymerase Rpb2, domain 3 JOS54_RS00380 PF04997 RNA polymerase Rpb1, domain 1 JOS54_RS00380 PF04998 RNA polymerase Rpb1, domain 5 JOS54_RS00380 PF05000 RNA polymerase Rpb1, domain 4 JOS54_RS00380 PF00623 RNA polymerase Rpb1, domain 2 JOS54_RS00380 PF04983 RNA polymerase Rpb1, domain 3 JOS54_RS00405 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JOS54_RS00410 PF00814 Glycoprotease family JOS54_RS00415 PF00583 Acetyltransferase (GNAT) family JOS54_RS00420 PF00814 Glycoprotease family JOS54_RS00425 PF02629 CoA binding domain JOS54_RS00425 PF06971 Putative DNA-binding protein N-terminus JOS54_RS00430 PF00152 tRNA synthetases class II (D, K and N) JOS54_RS00435 PF12848 ABC transporter JOS54_RS00435 PF16326 ABC transporter C-terminal domain JOS54_RS00435 PF00005 ABC transporter JOS54_RS00440 PF00365 Phosphofructokinase JOS54_RS00450 PF02661 Fic/DOC family JOS54_RS00450 PF13784 Fic/DOC family N-terminal JOS54_RS00505 PF02378 Phosphotransferase system, EIIC JOS54_RS00505 PF00367 phosphotransferase system, EIIB JOS54_RS00505 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JOS54_RS00510 PF00232 Glycosyl hydrolase family 1 JOS54_RS00530 PF00679 Elongation factor G C-terminus JOS54_RS00530 PF03144 Elongation factor Tu domain 2 JOS54_RS00530 PF14492 Elongation Factor G, domain II JOS54_RS00530 PF00009 Elongation factor Tu GTP binding domain JOS54_RS00530 PF03764 Elongation factor G, domain IV JOS54_RS00540 PF03458 UPF0126 domain JOS54_RS00550 PF13684 Dihydroxyacetone kinase family JOS54_RS00550 PF02734 DAK2 domain JOS54_RS00560 PF00999 Sodium/hydrogen exchanger family JOS54_RS00580 PF00899 ThiF family JOS54_RS00585 PF04073 Aminoacyl-tRNA editing domain JOS54_RS00590 PF01551 Peptidase family M23 JOS54_RS00600 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JOS54_RS00600 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JOS54_RS00605 PF00005 ABC transporter JOS54_RS00610 PF18075 FtsX extracellular domain JOS54_RS00610 PF02687 FtsX-like permease family JOS54_RS00615 PF03572 Peptidase family S41 JOS54_RS00615 PF17820 PDZ domain JOS54_RS00615 PF01471 Putative peptidoglycan binding domain JOS54_RS00620 PF00271 Helicase conserved C-terminal domain JOS54_RS00620 PF17757 UvrB interaction domain JOS54_RS00620 PF04851 Type III restriction enzyme, res subunit JOS54_RS00620 PF12344 Ultra-violet resistance protein B JOS54_RS00620 PF02151 UvrB/uvrC motif JOS54_RS00625 PF01250 Ribosomal protein S6 JOS54_RS00630 PF00436 Single-strand binding protein family JOS54_RS00635 PF01084 Ribosomal protein S18 JOS54_RS00640 PF01546 Peptidase family M20/M25/M40 JOS54_RS00645 PF01297 Zinc-uptake complex component A periplasmic JOS54_RS00650 PF00005 ABC transporter JOS54_RS00655 PF00950 ABC 3 transport family JOS54_RS00660 PF00950 ABC 3 transport family JOS54_RS00670 PF00072 Response regulator receiver domain JOS54_RS00670 PF00486 Transcriptional regulatory protein, C terminal JOS54_RS00675 PF00512 His Kinase A (phospho-acceptor) domain JOS54_RS00675 PF00672 HAMP domain JOS54_RS00675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS54_RS00685 PF00005 ABC transporter JOS54_RS00690 PF00860 Permease family JOS54_RS00695 PF00300 Histidine phosphatase superfamily (branch 1) JOS54_RS00715 PF00005 ABC transporter JOS54_RS00720 PF00005 ABC transporter JOS54_RS00725 PF02361 Cobalt transport protein JOS54_RS00730 PF01416 tRNA pseudouridine synthase JOS54_RS00735 PF01116 Fructose-bisphosphate aldolase class-II JOS54_RS00740 PF02378 Phosphotransferase system, EIIC JOS54_RS00745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS54_RS00750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS54_RS00750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS54_RS00755 PF08279 HTH domain JOS54_RS00755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS54_RS00755 PF05043 Mga helix-turn-helix domain JOS54_RS00755 PF00874 PRD domain JOS54_RS00760 PF00572 Ribosomal protein L13 JOS54_RS00765 PF00380 Ribosomal protein S9/S16 JOS54_RS00780 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS54_RS00780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOS54_RS00795 PF01368 DHH family JOS54_RS00795 PF02272 DHHA1 domain JOS54_RS00800 PF03948 Ribosomal protein L9, C-terminal domain JOS54_RS00800 PF01281 Ribosomal protein L9, N-terminal domain JOS54_RS00805 PF03796 DnaB-like helicase C terminal domain JOS54_RS00805 PF00772 DnaB-like helicase N terminal domain JOS54_RS00815 PF00753 Metallo-beta-lactamase superfamily JOS54_RS00825 PF02590 Predicted SPOUT methyltransferase JOS54_RS00830 PF00210 Ferritin-like domain JOS54_RS00835 PF00381 PTS HPr component phosphorylation site JOS54_RS00840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOS54_RS00840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOS54_RS00840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOS54_RS00840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOS54_RS00850 PF03167 Uracil DNA glycosylase superfamily JOS54_RS00855 PF00162 Phosphoglycerate kinase JOS54_RS00860 PF00121 Triosephosphate isomerase JOS54_RS00865 PF03952 Enolase, N-terminal domain JOS54_RS00865 PF00113 Enolase, C-terminal TIM barrel domain JOS54_RS00875 PF03840 Preprotein translocase SecG subunit JOS54_RS00880 PF00773 RNB domain JOS54_RS00880 PF08206 Ribonuclease B OB domain JOS54_RS00880 PF17876 Cold shock domain JOS54_RS00880 PF00575 S1 RNA binding domain JOS54_RS00885 PF01668 SmpB protein JOS54_RS00910 PF01790 Prolipoprotein diacylglyceryl transferase JOS54_RS00915 PF02502 Ribose/Galactose Isomerase JOS54_RS00920 PF14537 Cytochrome c3 JOS54_RS00920 PF00890 FAD binding domain JOS54_RS00930 PF06480 FtsH Extracellular JOS54_RS00930 PF17862 AAA+ lid domain JOS54_RS00930 PF00004 ATPase family associated with various cellular activities (AAA) JOS54_RS00930 PF01434 Peptidase family M41 JOS54_RS00940 PF09285 Elongation factor P, C-terminal JOS54_RS00940 PF08207 Elongation factor P (EF-P) KOW-like domain JOS54_RS00940 PF01132 Elongation factor P (EF-P) OB domain JOS54_RS00950 PF06838 Methionine gamma-lyase JOS54_RS00955 PF09587 Bacterial capsule synthesis protein PGA_cap JOS54_RS00970 PF13614 AAA domain JOS54_RS00995 PF09827 CRISPR associated protein Cas2 JOS54_RS01095 PF13936 Helix-turn-helix domain JOS54_RS01150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS54_RS01155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS54_RS01160 PF03611 PTS system sugar-specific permease component JOS54_RS01165 PF03328 HpcH/HpaI aldolase/citrate lyase family JOS54_RS01175 PF00571 CBS domain JOS54_RS01175 PF01380 SIS domain JOS54_RS01190 PF00294 pfkB family carbohydrate kinase JOS54_RS01195 PF04227 Indigoidine synthase A like protein JOS54_RS01200 PF02522 Aminoglycoside 3-N-acetyltransferase JOS54_RS01205 PF13185 GAF domain JOS54_RS01210 PF04167 Protein of unknown function (DUF402) JOS54_RS01230 PF02557 D-alanyl-D-alanine carboxypeptidase JOS54_RS01235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS54_RS01245 PF00005 ABC transporter JOS54_RS01245 PF00664 ABC transporter transmembrane region JOS54_RS01250 PF00005 ABC transporter JOS54_RS01250 PF00664 ABC transporter transmembrane region JOS54_RS01255 PF00403 Heavy-metal-associated domain JOS54_RS01260 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV JOS54_RS01275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS54_RS01280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS54_RS01285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS54_RS01290 PF03611 PTS system sugar-specific permease component JOS54_RS01295 PF13580 SIS domain JOS54_RS01315 PF02580 D-Tyr-tRNA(Tyr) deacylase JOS54_RS01320 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JOS54_RS01320 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JOS54_RS01325 PF06107 Bacterial protein of unknown function (DUF951) JOS54_RS01330 PF01926 50S ribosome-binding GTPase JOS54_RS01330 PF06071 Protein of unknown function (DUF933) JOS54_RS01335 PF06153 Cyclic-di-AMP receptor JOS54_RS01340 PF01743 Poly A polymerase head domain JOS54_RS01340 PF12627 Probable RNA and SrmB- binding site of polymerase A JOS54_RS01340 PF13735 tRNA nucleotidyltransferase domain 2 putative JOS54_RS01345 PF02542 YgbB family JOS54_RS01350 PF01966 HD domain JOS54_RS01365 PF01116 Fructose-bisphosphate aldolase class-II JOS54_RS01370 PF13419 Haloacid dehalogenase-like hydrolase JOS54_RS01375 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JOS54_RS01380 PF01197 Ribosomal protein L31 JOS54_RS01385 PF03462 PCRF domain JOS54_RS01385 PF00472 RF-1 domain JOS54_RS01390 PF13847 Methyltransferase domain JOS54_RS01390 PF17827 PrmC N-terminal domain JOS54_RS01395 PF00884 Sulfatase JOS54_RS01400 PF04203 Sortase domain JOS54_RS01405 PF12804 MobA-like NTP transferase domain JOS54_RS01405 PF00132 Bacterial transferase hexapeptide (six repeats) JOS54_RS01405 PF14602 Hexapeptide repeat of succinyl-transferase JOS54_RS01415 PF01300 Telomere recombination JOS54_RS01440 PF01171 PP-loop family JOS54_RS01445 PF00156 Phosphoribosyl transferase domain JOS54_RS01450 PF00004 ATPase family associated with various cellular activities (AAA) JOS54_RS01450 PF17862 AAA+ lid domain JOS54_RS01450 PF01434 Peptidase family M41 JOS54_RS01450 PF06480 FtsH Extracellular JOS54_RS01465 PF16355 Domain of unknown function (DUF4982) JOS54_RS01465 PF13287 Fn3 associated JOS54_RS01465 PF00703 Glycosyl hydrolases family 2 JOS54_RS01465 PF02837 Glycosyl hydrolases family 2, sugar binding domain JOS54_RS01465 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JOS54_RS01470 PF01430 Hsp33 protein JOS54_RS01475 PF01207 Dihydrouridine synthase (Dus) JOS54_RS01480 PF03883 Peroxide stress protein YaaA JOS54_RS01485 PF03883 Peroxide stress protein YaaA JOS54_RS01505 PF02583 Metal-sensitive transcriptional repressor JOS54_RS01510 PF00403 Heavy-metal-associated domain JOS54_RS01515 PF00403 Heavy-metal-associated domain JOS54_RS01515 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS54_RS01515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOS54_RS01520 PF00248 Aldo/keto reductase family JOS54_RS01540 PF00156 Phosphoribosyl transferase domain JOS54_RS01550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JOS54_RS01550 PF01411 tRNA synthetases class II (A) JOS54_RS01550 PF02272 DHHA1 domain JOS54_RS01565 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS54_RS01565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JOS54_RS01645 PF04474 Protein of unknown function (DUF554) JOS54_RS01650 PF09587 Bacterial capsule synthesis protein PGA_cap JOS54_RS01670 PF00005 ABC transporter JOS54_RS01685 PF01569 PAP2 superfamily JOS54_RS01690 PF00578 AhpC/TSA family JOS54_RS01695 PF03477 ATP cone domain JOS54_RS01695 PF13597 Anaerobic ribonucleoside-triphosphate reductase JOS54_RS01705 PF00258 Flavodoxin JOS54_RS01710 PF07085 DRTGG domain JOS54_RS01710 PF02833 DHHA2 domain JOS54_RS01710 PF01368 DHH family JOS54_RS01710 PF00571 CBS domain JOS54_RS01735 PF00440 Bacterial regulatory proteins, tetR family JOS54_RS01735 PF17932 Tetracyclin repressor-like, C-terminal domain JOS54_RS01740 PF00005 ABC transporter JOS54_RS01740 PF00664 ABC transporter transmembrane region JOS54_RS01745 PF00664 ABC transporter transmembrane region JOS54_RS01745 PF00005 ABC transporter JOS54_RS01750 PF00005 ABC transporter JOS54_RS01820 PF00478 IMP dehydrogenase / GMP reductase domain JOS54_RS01830 PF00750 tRNA synthetases class I (R) JOS54_RS01830 PF05746 DALR anticodon binding domain JOS54_RS01830 PF03485 Arginyl tRNA synthetase N terminal domain JOS54_RS01840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JOS54_RS01840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JOS54_RS01845 PF00696 Amino acid kinase family JOS54_RS01850 PF03606 C4-dicarboxylate anaerobic carrier JOS54_RS01855 PF12833 Helix-turn-helix domain JOS54_RS01855 PF02311 AraC-like ligand binding domain JOS54_RS01865 PF01098 Cell cycle protein JOS54_RS01870 PF13180 PDZ domain JOS54_RS01905 PF13167 GTP-binding GTPase N-terminal JOS54_RS01905 PF01926 50S ribosome-binding GTPase JOS54_RS01905 PF16360 GTP-binding GTPase Middle Region JOS54_RS01910 PF02127 Aminopeptidase I zinc metalloprotease (M18) JOS54_RS01915 PF00300 Histidine phosphatase superfamily (branch 1) JOS54_RS01925 PF14537 Cytochrome c3 JOS54_RS01925 PF00890 FAD binding domain JOS54_RS01930 PF02378 Phosphotransferase system, EIIC JOS54_RS01935 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JOS54_RS01935 PF00703 Glycosyl hydrolases family 2 JOS54_RS01935 PF02837 Glycosyl hydrolases family 2, sugar binding domain JOS54_RS01940 PF12833 Helix-turn-helix domain JOS54_RS01945 PF03786 D-mannonate dehydratase (UxuA) JOS54_RS01950 PF01232 Mannitol dehydrogenase Rossmann domain JOS54_RS01950 PF08125 Mannitol dehydrogenase C-terminal domain JOS54_RS01960 PF02614 Glucuronate isomerase JOS54_RS01980 PF02660 Glycerol-3-phosphate acyltransferase JOS54_RS01985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS54_RS01985 PF00986 DNA gyrase B subunit, carboxyl terminus JOS54_RS01985 PF00204 DNA gyrase B JOS54_RS01985 PF01751 Toprim domain JOS54_RS01990 PF00521 DNA gyrase/topoisomerase IV, subunit A JOS54_RS01990 PF03989 DNA gyrase C-terminal domain, beta-propeller JOS54_RS01995 PF01926 50S ribosome-binding GTPase JOS54_RS02005 PF01467 Cytidylyltransferase-like JOS54_RS02005 PF01966 HD domain JOS54_RS02015 PF07261 Replication initiation and membrane attachment JOS54_RS02020 PF10576 Iron-sulfur binding domain of endonuclease III JOS54_RS02020 PF00730 HhH-GPD superfamily base excision DNA repair protein JOS54_RS02020 PF00633 Helix-hairpin-helix motif JOS54_RS02025 PF02645 Uncharacterised protein, DegV family COG1307 JOS54_RS02040 PF00912 Transglycosylase JOS54_RS02040 PF00905 Penicillin binding protein transpeptidase domain JOS54_RS02045 PF03838 Recombination protein U JOS54_RS02050 PF05103 DivIVA protein JOS54_RS02060 PF01066 CDP-alcohol phosphatidyltransferase JOS54_RS02065 PF00154 recA bacterial DNA recombination protein JOS54_RS02070 PF01225 Mur ligase family, catalytic domain JOS54_RS02070 PF02875 Mur ligase family, glutamate ligase domain JOS54_RS02070 PF08245 Mur ligase middle domain JOS54_RS02080 PF01966 HD domain JOS54_RS02080 PF00013 KH domain JOS54_RS02080 PF12072 Domain of unknown function (DUF3552) JOS54_RS02085 PF00919 Uncharacterized protein family UPF0004 JOS54_RS02085 PF04055 Radical SAM superfamily JOS54_RS02085 PF01938 TRAM domain JOS54_RS02090 PF17770 Ribonuclease J C-terminal domain JOS54_RS02090 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JOS54_RS02090 PF00753 Metallo-beta-lactamase superfamily JOS54_RS02095 PF09397 Ftsk gamma domain JOS54_RS02095 PF01580 FtsK/SpoIIIE family JOS54_RS02095 PF17854 FtsK alpha domain JOS54_RS02110 PF02978 Signal peptide binding domain JOS54_RS02110 PF02881 SRP54-type protein, helical bundle domain JOS54_RS02110 PF00448 SRP54-type protein, GTPase domain JOS54_RS02115 PF00886 Ribosomal protein S16 JOS54_RS02125 PF01782 RimM N-terminal domain JOS54_RS02125 PF05239 PRC-barrel domain JOS54_RS02130 PF01746 tRNA (Guanine-1)-methyltransferase JOS54_RS02140 PF03006 Haemolysin-III related JOS54_RS02155 PF04029 2-phosphosulpholactate phosphatase JOS54_RS02165 PF01245 Ribosomal protein L19 JOS54_RS02170 PF10502 Signal peptidase, peptidase S26 JOS54_RS02175 PF01926 50S ribosome-binding GTPase JOS54_RS02180 PF01351 Ribonuclease HII JOS54_RS02185 PF18255 DNA processing protein A sterile alpha motif domain JOS54_RS02185 PF02481 DNA recombination-mediator protein A JOS54_RS02190 PF01396 Topoisomerase DNA binding C4 zinc finger JOS54_RS02190 PF01131 DNA topoisomerase JOS54_RS02190 PF01751 Toprim domain JOS54_RS02195 PF01134 Glucose inhibited division protein A JOS54_RS02200 PF02899 Phage integrase, N-terminal SAM-like domain JOS54_RS02200 PF00589 Phage integrase family JOS54_RS02225 PF00318 Ribosomal protein S2 JOS54_RS02230 PF00889 Elongation factor TS JOS54_RS02240 PF00696 Amino acid kinase family JOS54_RS02245 PF01765 Ribosome recycling factor JOS54_RS02250 PF01255 Putative undecaprenyl diphosphate synthase JOS54_RS02260 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JOS54_RS02260 PF13288 DXP reductoisomerase C-terminal domain JOS54_RS02260 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JOS54_RS02265 PF02163 Peptidase family M50 JOS54_RS02265 PF17820 PDZ domain JOS54_RS02280 PF00561 alpha/beta hydrolase fold JOS54_RS02285 PF04002 RadC-like JAB domain JOS54_RS02290 PF01594 AI-2E family transporter JOS54_RS02300 PF01367 5'-3' exonuclease, C-terminal SAM fold JOS54_RS02300 PF00476 DNA polymerase family A JOS54_RS02300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JOS54_RS02305 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JOS54_RS02305 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JOS54_RS02305 PF06827 Zinc finger found in FPG and IleRS JOS54_RS02310 PF01121 Dephospho-CoA kinase JOS54_RS02325 PF00365 Phosphofructokinase JOS54_RS02330 PF00224 Pyruvate kinase, barrel domain JOS54_RS02330 PF00391 PEP-utilising enzyme, mobile domain JOS54_RS02330 PF02887 Pyruvate kinase, alpha/beta domain JOS54_RS02355 PF00183 Hsp90 protein JOS54_RS02380 PF13520 Amino acid permease JOS54_RS02385 PF01168 Alanine racemase, N-terminal domain JOS54_RS02395 PF04650 YSIRK type signal peptide JOS54_RS02395 PF00746 LPXTG cell wall anchor motif JOS54_RS02395 PF00728 Glycosyl hydrolase family 20, catalytic domain JOS54_RS02395 PF07501 G5 domain JOS54_RS02415 PF13411 MerR HTH family regulatory protein JOS54_RS02420 PF05958 tRNA (Uracil-5-)-methyltransferase JOS54_RS02420 PF01938 TRAM domain JOS54_RS02430 PF00005 ABC transporter JOS54_RS02435 PF02653 Branched-chain amino acid transport system / permease component JOS54_RS02440 PF02653 Branched-chain amino acid transport system / permease component JOS54_RS02460 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JOS54_RS02465 PF02086 D12 class N6 adenine-specific DNA methyltransferase JOS54_RS02505 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JOS54_RS02505 PF00128 Alpha amylase, catalytic domain JOS54_RS02505 PF02806 Alpha amylase, C-terminal all-beta domain JOS54_RS02510 PF00343 Carbohydrate phosphorylase JOS54_RS02515 PF00483 Nucleotidyl transferase JOS54_RS02520 PF00483 Nucleotidyl transferase JOS54_RS02525 PF00534 Glycosyl transferases group 1 JOS54_RS02525 PF08323 Starch synthase catalytic domain JOS54_RS02530 PF00128 Alpha amylase, catalytic domain JOS54_RS02530 PF02903 Alpha amylase, N-terminal ig-like domain JOS54_RS02530 PF00686 Starch binding domain JOS54_RS02535 PF03009 Glycerophosphoryl diester phosphodiesterase family JOS54_RS02540 PF02645 Uncharacterised protein, DegV family COG1307 JOS54_RS02555 PF07670 Nucleoside recognition JOS54_RS02555 PF02421 Ferrous iron transport protein B JOS54_RS02555 PF17910 FeoB cytosolic helical domain JOS54_RS02555 PF07664 Ferrous iron transport protein B C terminus JOS54_RS02555 PF04023 FeoA domain JOS54_RS02560 PF00753 Metallo-beta-lactamase superfamily JOS54_RS02560 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JOS54_RS02560 PF17770 Ribonuclease J C-terminal domain JOS54_RS02565 PF01327 Polypeptide deformylase JOS54_RS02570 PF01098 Cell cycle protein JOS54_RS02580 PF01467 Cytidylyltransferase-like JOS54_RS02585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JOS54_RS02585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JOS54_RS02600 PF00005 ABC transporter JOS54_RS02605 PF04055 Radical SAM superfamily JOS54_RS02605 PF06463 Molybdenum Cofactor Synthesis C JOS54_RS02625 PF01628 HrcA protein C terminal domain JOS54_RS02630 PF01025 GrpE JOS54_RS02635 PF00012 Hsp70 protein JOS54_RS02640 PF00684 DnaJ central domain JOS54_RS02640 PF01556 DnaJ C terminal domain JOS54_RS02640 PF00226 DnaJ domain JOS54_RS02645 PF02861 Clp amino terminal domain, pathogenicity island component JOS54_RS02645 PF17871 AAA lid domain JOS54_RS02645 PF10431 C-terminal, D2-small domain, of ClpB protein JOS54_RS02645 PF07724 AAA domain (Cdc48 subfamily) JOS54_RS02645 PF00004 ATPase family associated with various cellular activities (AAA) JOS54_RS02665 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JOS54_RS02665 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JOS54_RS02665 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JOS54_RS02675 PF02540 NAD synthase JOS54_RS02675 PF00795 Carbon-nitrogen hydrolase JOS54_RS02680 PF00860 Permease family JOS54_RS02690 PF00005 ABC transporter JOS54_RS02690 PF00664 ABC transporter transmembrane region JOS54_RS02690 PF03412 Peptidase C39 family JOS54_RS02720 PF00005 ABC transporter JOS54_RS02740 PF00664 ABC transporter transmembrane region JOS54_RS02740 PF08021 Siderophore-interacting FAD-binding domain JOS54_RS02740 PF04954 Siderophore-interacting protein JOS54_RS02740 PF00005 ABC transporter JOS54_RS02745 PF00664 ABC transporter transmembrane region JOS54_RS02745 PF00005 ABC transporter JOS54_RS02755 PF04055 Radical SAM superfamily JOS54_RS02755 PF16199 Radical_SAM C-terminal domain JOS54_RS02760 PF00465 Iron-containing alcohol dehydrogenase JOS54_RS02765 PF00274 Fructose-bisphosphate aldolase class-I JOS54_RS02770 PF02875 Mur ligase family, glutamate ligase domain JOS54_RS02770 PF01225 Mur ligase family, catalytic domain JOS54_RS02770 PF08245 Mur ligase middle domain JOS54_RS02785 PF00005 ABC transporter JOS54_RS02790 PF13367 PrsW family intramembrane metalloprotease JOS54_RS02795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JOS54_RS02800 PF02397 Bacterial sugar transferase JOS54_RS02805 PF02719 Polysaccharide biosynthesis protein JOS54_RS02810 PF04991 LicD family JOS54_RS02815 PF04991 LicD family JOS54_RS02820 PF17101 Stealth protein CR1, conserved region 1 JOS54_RS02820 PF17103 Stealth protein CR4, conserved region 4 JOS54_RS02820 PF11380 Stealth protein CR2, conserved region 2 JOS54_RS02840 PF00266 Aminotransferase class-V JOS54_RS02845 PF01467 Cytidylyltransferase-like JOS54_RS02855 PF03816 Cell envelope-related transcriptional attenuator domain JOS54_RS02870 PF00465 Iron-containing alcohol dehydrogenase JOS54_RS02875 PF00265 Thymidine kinase JOS54_RS02880 PF01554 MatE JOS54_RS02885 PF08903 Domain of unknown function (DUF1846) JOS54_RS02890 PF08439 Oligopeptidase F JOS54_RS02890 PF01432 Peptidase family M3 JOS54_RS02895 PF01594 AI-2E family transporter JOS54_RS02900 PF00255 Glutathione peroxidase JOS54_RS02910 PF01479 S4 domain JOS54_RS02910 PF00849 RNA pseudouridylate synthase JOS54_RS02915 PF05670 NFACT protein RNA binding domain JOS54_RS02920 PF12704 MacB-like periplasmic core domain JOS54_RS02920 PF02687 FtsX-like permease family JOS54_RS02920 PF00005 ABC transporter JOS54_RS02925 PF00625 Guanylate kinase JOS54_RS02930 PF03313 Serine dehydratase alpha chain JOS54_RS02935 PF01479 S4 domain JOS54_RS02935 PF00163 Ribosomal protein S4/S9 N-terminal domain JOS54_RS02940 PF06160 Septation ring formation regulator, EzrA JOS54_RS02945 PF00266 Aminotransferase class-V JOS54_RS02950 PF02568 Thiamine biosynthesis protein (ThiI) JOS54_RS02950 PF02926 THUMP domain JOS54_RS02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS54_RS02965 PF00829 Ribosomal prokaryotic L21 protein JOS54_RS02970 PF04327 Cysteine protease Prp JOS54_RS02975 PF01016 Ribosomal L27 protein JOS54_RS02980 PF01018 GTP1/OBG JOS54_RS02980 PF01926 50S ribosome-binding GTPase JOS54_RS02980 PF09269 Domain of unknown function (DUF1967) JOS54_RS02985 PF01330 RuvA N terminal domain JOS54_RS02985 PF07499 RuvA, C-terminal domain JOS54_RS02990 PF17864 RuvB AAA lid domain JOS54_RS02990 PF05491 RuvB C-terminal winged helix domain JOS54_RS02990 PF05496 Holliday junction DNA helicase RuvB P-loop domain JOS54_RS03005 PF00005 ABC transporter JOS54_RS03005 PF00664 ABC transporter transmembrane region JOS54_RS03010 PF08264 Anticodon-binding domain of tRNA JOS54_RS03010 PF00133 tRNA synthetases class I (I, L, M and V) JOS54_RS03010 PF10458 Valyl tRNA synthetase tRNA binding arm JOS54_RS03015 PF00391 PEP-utilising enzyme, mobile domain JOS54_RS03015 PF02896 PEP-utilising enzyme, TIM barrel domain JOS54_RS03015 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JOS54_RS03020 PF01649 Ribosomal protein S20 JOS54_RS03025 PF00551 Formyl transferase JOS54_RS03025 PF02911 Formyl transferase, C-terminal domain JOS54_RS03030 PF00679 Elongation factor G C-terminus JOS54_RS03030 PF06421 GTP-binding protein LepA C-terminus JOS54_RS03030 PF00009 Elongation factor Tu GTP binding domain JOS54_RS03030 PF03144 Elongation factor Tu domain 2 JOS54_RS03035 PF04055 Radical SAM superfamily JOS54_RS03035 PF06969 HemN C-terminal domain JOS54_RS03040 PF00312 Ribosomal protein S15 JOS54_RS03045 PF00005 ABC transporter JOS54_RS03065 PF00575 S1 RNA binding domain JOS54_RS03065 PF00013 KH domain JOS54_RS03065 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JOS54_RS03065 PF03725 3' exoribonuclease family, domain 2 JOS54_RS03065 PF01138 3' exoribonuclease family, domain 1 JOS54_RS03070 PF02390 Putative methyltransferase JOS54_RS03095 PF00356 Bacterial regulatory proteins, lacI family JOS54_RS03100 PF01479 S4 domain JOS54_RS03100 PF00579 tRNA synthetases class I (W and Y) JOS54_RS03110 PF02576 RimP N-terminal domain JOS54_RS03110 PF17384 RimP C-terminal SH3 domain JOS54_RS03115 PF13184 NusA-like KH domain JOS54_RS03115 PF08529 NusA N-terminal domain JOS54_RS03115 PF00575 S1 RNA binding domain JOS54_RS03120 PF04296 Protein of unknown function (DUF448) JOS54_RS03125 PF11987 Translation-initiation factor 2 JOS54_RS03125 PF04760 Translation initiation factor IF-2, N-terminal region JOS54_RS03125 PF00009 Elongation factor Tu GTP binding domain JOS54_RS03130 PF02033 Ribosome-binding factor A JOS54_RS03135 PF05737 Collagen binding domain JOS54_RS03135 PF05738 Cna protein B-type domain JOS54_RS03135 PF17802 Prealbumin-like fold domain JOS54_RS03160 PF12538 DNA transporter JOS54_RS03160 PF01580 FtsK/SpoIIIE family JOS54_RS03170 PF16198 tRNA pseudouridylate synthase B C-terminal domain JOS54_RS03170 PF01509 TruB family pseudouridylate synthase (N terminal domain) JOS54_RS03175 PF01687 Riboflavin kinase JOS54_RS03175 PF06574 FAD synthetase JOS54_RS03180 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JOS54_RS03180 PF01189 16S rRNA methyltransferase RsmB/F JOS54_RS03180 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JOS54_RS03195 PF00707 Translation initiation factor IF-3, C-terminal domain JOS54_RS03195 PF05198 Translation initiation factor IF-3, N-terminal domain JOS54_RS03200 PF01632 Ribosomal protein L35 JOS54_RS03205 PF00453 Ribosomal protein L20 JOS54_RS03225 PF03577 Peptidase family C69 JOS54_RS03230 PF01712 Deoxynucleoside kinase JOS54_RS03235 PF00749 tRNA synthetases class I (E and Q), catalytic domain JOS54_RS03245 PF01725 Ham1 family JOS54_RS03255 PF00588 SpoU rRNA Methylase family JOS54_RS03270 PF00579 tRNA synthetases class I (W and Y) JOS54_RS03275 PF03960 ArsC family JOS54_RS03285 PF13538 UvrD-like helicase C-terminal domain JOS54_RS03285 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain JOS54_RS03285 PF14490 Helix-hairpin-helix containing domain JOS54_RS03290 PF01411 tRNA synthetases class II (A) JOS54_RS03290 PF02272 DHHA1 domain JOS54_RS03290 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JOS54_RS03295 PF06135 IreB regulatory phosphoprotein JOS54_RS03300 PF03652 Holliday junction resolvase JOS54_RS03310 PF02618 YceG-like family JOS54_RS03315 PF00293 NUDIX domain JOS54_RS03320 PF00485 Phosphoribulokinase / Uridine kinase family JOS54_RS03325 PF03449 Transcription elongation factor, N-terminal JOS54_RS03325 PF01272 Transcription elongation factor, GreA/GreB, C-term JOS54_RS03345 PF03315 Serine dehydratase beta chain JOS54_RS03345 PF03313 Serine dehydratase alpha chain JOS54_RS03350 PF16325 Peptidase family U32 C-terminal domain JOS54_RS03350 PF01136 Peptidase family U32 JOS54_RS03355 PF01741 Large-conductance mechanosensitive channel, MscL JOS54_RS03395 PF02463 RecF/RecN/SMC N terminal domain JOS54_RS03395 PF06470 SMC proteins Flexible Hinge Domain JOS54_RS03400 PF02881 SRP54-type protein, helical bundle domain JOS54_RS03400 PF00448 SRP54-type protein, GTPase domain JOS54_RS03405 PF04297 Putative helix-turn-helix protein, YlxM / p13 like JOS54_RS03410 PF00871 Acetokinase family JOS54_RS03415 PF01368 DHH family JOS54_RS03415 PF02272 DHHA1 domain JOS54_RS03420 PF00005 ABC transporter JOS54_RS03430 PF00270 DEAD/DEAH box helicase JOS54_RS03430 PF00271 Helicase conserved C-terminal domain JOS54_RS03435 PF03764 Elongation factor G, domain IV JOS54_RS03435 PF00009 Elongation factor Tu GTP binding domain JOS54_RS03435 PF14492 Elongation Factor G, domain II JOS54_RS03435 PF00679 Elongation factor G C-terminus JOS54_RS03455 PF13457 GW (Gly-Tryp) dipeptide domain JOS54_RS03455 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JOS54_RS03470 PF02645 Uncharacterised protein, DegV family COG1307 JOS54_RS03500 PF00589 Phage integrase family JOS54_RS03500 PF02899 Phage integrase, N-terminal SAM-like domain JOS54_RS03505 PF11798 IMS family HHH motif JOS54_RS03505 PF11799 impB/mucB/samB family C-terminal domain JOS54_RS03505 PF00817 impB/mucB/samB family JOS54_RS03510 PF13476 AAA domain JOS54_RS03515 PF02780 Transketolase, C-terminal domain JOS54_RS03515 PF02779 Transketolase, pyrimidine binding domain JOS54_RS03515 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JOS54_RS03520 PF00348 Polyprenyl synthetase JOS54_RS03530 PF02601 Exonuclease VII, large subunit JOS54_RS03530 PF13742 OB-fold nucleic acid binding domain JOS54_RS03535 PF01029 NusB family JOS54_RS03540 PF00478 IMP dehydrogenase / GMP reductase domain JOS54_RS03540 PF00571 CBS domain JOS54_RS03545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOS54_RS03545 PF03129 Anticodon binding domain JOS54_RS03545 PF04073 Aminoacyl-tRNA editing domain JOS54_RS03555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOS54_RS03555 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JOS54_RS03555 PF02824 TGS domain JOS54_RS03555 PF03129 Anticodon binding domain JOS54_RS03560 PF00929 Exonuclease JOS54_RS03560 PF02811 PHP domain JOS54_RS03560 PF14579 Helix-hairpin-helix motif JOS54_RS03560 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JOS54_RS03560 PF07733 Bacterial DNA polymerase III alpha NTPase domain JOS54_RS03560 PF11490 DNA polymerase III polC-type N-terminus II JOS54_RS03560 PF14480 DNA polymerase III polC-type N-terminus I JOS54_RS03565 PF05872 Bacterial protein of unknown function (DUF853) JOS54_RS03570 PF00035 Double-stranded RNA binding motif JOS54_RS03570 PF14622 Ribonuclease-III-like JOS54_RS03575 PF00270 DEAD/DEAH box helicase JOS54_RS03575 PF17191 RecG wedge domain JOS54_RS03575 PF00271 Helicase conserved C-terminal domain JOS54_RS03580 PF02734 DAK2 domain JOS54_RS03580 PF13684 Dihydroxyacetone kinase family JOS54_RS03595 PF01565 FAD binding domain JOS54_RS03595 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JOS54_RS03600 PF04101 Glycosyltransferase family 28 C-terminal domain JOS54_RS03600 PF03033 Glycosyltransferase family 28 N-terminal domain JOS54_RS03605 PF01926 50S ribosome-binding GTPase JOS54_RS03610 PF02190 ATP-dependent protease La (LON) substrate-binding domain JOS54_RS03610 PF05362 Lon protease (S16) C-terminal proteolytic domain JOS54_RS03610 PF00004 ATPase family associated with various cellular activities (AAA) JOS54_RS03615 PF05698 Bacterial trigger factor protein (TF) C-terminus JOS54_RS03615 PF05697 Bacterial trigger factor protein (TF) JOS54_RS03615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOS54_RS03650 PF01541 GIY-YIG catalytic domain JOS54_RS03650 PF08459 UvrC Helix-hairpin-helix N-terminal JOS54_RS03650 PF02151 UvrB/uvrC motif JOS54_RS03655 PF01713 Smr domain JOS54_RS03655 PF00488 MutS domain V JOS54_RS03665 PF01351 Ribonuclease HII JOS54_RS03665 PF11858 Domain of unknown function (DUF3378) JOS54_RS03670 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JOS54_RS03675 PF01479 S4 domain JOS54_RS03675 PF00849 RNA pseudouridylate synthase JOS54_RS03680 PF01252 Signal peptidase (SPase) II JOS54_RS03695 PF00005 ABC transporter JOS54_RS03700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOS54_RS03700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOS54_RS03700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOS54_RS03700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOS54_RS03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS54_RS03705 PF08448 PAS fold JOS54_RS03705 PF00072 Response regulator receiver domain JOS54_RS03705 PF13426 PAS domain JOS54_RS03705 PF00512 His Kinase A (phospho-acceptor) domain JOS54_RS03710 PF00072 Response regulator receiver domain JOS54_RS03710 PF00486 Transcriptional regulatory protein, C terminal JOS54_RS03715 PF10609 NUBPL iron-transfer P-loop NTPase JOS54_RS03725 PF04079 Segregation and condensation complex subunit ScpB JOS54_RS03730 PF02616 Segregation and condensation protein ScpA JOS54_RS03735 PF08264 Anticodon-binding domain of tRNA JOS54_RS03735 PF13603 Leucyl-tRNA synthetase, Domain 2 JOS54_RS03735 PF00133 tRNA synthetases class I (I, L, M and V) JOS54_RS03735 PF09334 tRNA synthetases class I (M) JOS54_RS03750 PF01261 Xylose isomerase-like TIM barrel JOS54_RS03755 PF00596 Class II Aldolase and Adducin N-terminal domain JOS54_RS03765 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS54_RS03770 PF03611 PTS system sugar-specific permease component JOS54_RS03785 PF08220 DeoR-like helix-turn-helix domain JOS54_RS03785 PF00455 DeoR C terminal sensor domain JOS54_RS03790 PF00664 ABC transporter transmembrane region JOS54_RS03790 PF00005 ABC transporter JOS54_RS03795 PF00005 ABC transporter JOS54_RS03795 PF08021 Siderophore-interacting FAD-binding domain JOS54_RS03795 PF04954 Siderophore-interacting protein JOS54_RS03795 PF00664 ABC transporter transmembrane region JOS54_RS03805 PF00005 ABC transporter JOS54_RS03840 PF05175 Methyltransferase small domain JOS54_RS03845 PF01336 OB-fold nucleic acid binding domain JOS54_RS03845 PF02811 PHP domain JOS54_RS03845 PF14579 Helix-hairpin-helix motif JOS54_RS03845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JOS54_RS03845 PF07733 Bacterial DNA polymerase III alpha NTPase domain JOS54_RS03850 PF00905 Penicillin binding protein transpeptidase domain JOS54_RS03850 PF00912 Transglycosylase JOS54_RS03855 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JOS54_RS03855 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JOS54_RS03860 PF01926 50S ribosome-binding GTPase JOS54_RS03860 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JOS54_RS03865 PF02224 Cytidylate kinase JOS54_RS03875 PF12822 ECF transporter, substrate-specific component JOS54_RS03880 PF01132 Elongation factor P (EF-P) OB domain JOS54_RS03880 PF09285 Elongation factor P, C-terminal JOS54_RS03880 PF08207 Elongation factor P (EF-P) KOW-like domain JOS54_RS03900 PF07963 Prokaryotic N-terminal methylation motif JOS54_RS03910 PF00437 Type II/IV secretion system protein JOS54_RS03915 PF00753 Metallo-beta-lactamase superfamily JOS54_RS03920 PF00471 Ribosomal protein L33 JOS54_RS03925 PF04551 GcpE protein JOS54_RS03930 PF00271 Helicase conserved C-terminal domain JOS54_RS03930 PF00270 DEAD/DEAH box helicase JOS54_RS03935 PF02401 LytB protein JOS54_RS03940 PF00849 RNA pseudouridylate synthase JOS54_RS03940 PF01479 S4 domain JOS54_RS03960 PF00140 Sigma-70 factor, region 1.2 JOS54_RS03960 PF04545 Sigma-70, region 4 JOS54_RS03960 PF04539 Sigma-70 region 3 JOS54_RS03960 PF03979 Sigma-70 factor, region 1.1 JOS54_RS03960 PF04542 Sigma-70 region 2 JOS54_RS03965 PF08275 DNA primase catalytic core, N-terminal domain JOS54_RS03965 PF10410 DnaB-helicase binding domain of primase JOS54_RS03965 PF01807 CHC2 zinc finger JOS54_RS03970 PF03129 Anticodon binding domain JOS54_RS03970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOS54_RS03975 PF11967 Recombination protein O N terminal JOS54_RS03975 PF02565 Recombination protein O C terminal JOS54_RS03980 PF01926 50S ribosome-binding GTPase JOS54_RS03980 PF07650 KH domain JOS54_RS03985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JOS54_RS03990 PF02130 Uncharacterized protein family UPF0054 JOS54_RS04000 PF02562 PhoH-like protein JOS54_RS04010 PF01165 Ribosomal protein S21 JOS54_RS04020 PF01751 Toprim domain JOS54_RS04020 PF01131 DNA topoisomerase JOS54_RS04030 PF13614 AAA domain JOS54_RS04140 PF00436 Single-strand binding protein family JOS54_RS04205 PF13361 UvrD-like helicase C-terminal domain JOS54_RS04205 PF00580 UvrD/REP helicase N-terminal domain JOS54_RS04225 PF01791 DeoC/LacD family aldolase JOS54_RS04230 PF01225 Mur ligase family, catalytic domain JOS54_RS04230 PF08245 Mur ligase middle domain JOS54_RS04230 PF02875 Mur ligase family, glutamate ligase domain JOS54_RS04235 PF04452 RNA methyltransferase JOS54_RS04240 PF00571 CBS domain JOS54_RS04240 PF01595 Cyclin M transmembrane N-terminal domain JOS54_RS04240 PF03471 Transporter associated domain JOS54_RS04245 PF12327 FtsZ family, C-terminal domain JOS54_RS04245 PF00091 Tubulin/FtsZ family, GTPase domain JOS54_RS04255 PF01554 MatE JOS54_RS04260 PF00830 Ribosomal L28 family JOS54_RS04265 PF04263 Thiamin pyrophosphokinase, catalytic domain JOS54_RS04265 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain JOS54_RS04270 PF00834 Ribulose-phosphate 3 epimerase family JOS54_RS04275 PF16745 RsgA N-terminal domain JOS54_RS04275 PF03193 RsgA GTPase JOS54_RS04280 PF03793 PASTA domain JOS54_RS04280 PF00069 Protein kinase domain JOS54_RS04290 PF04055 Radical SAM superfamily JOS54_RS04295 PF01189 16S rRNA methyltransferase RsmB/F JOS54_RS04295 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JOS54_RS04295 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JOS54_RS04300 PF04851 Type III restriction enzyme, res subunit JOS54_RS04300 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JOS54_RS04300 PF18074 Primosomal protein N C-terminal domain JOS54_RS04300 PF17764 3′ DNA-binding domain (3′BD) JOS54_RS04300 PF00271 Helicase conserved C-terminal domain JOS54_RS04305 PF01812 5-formyltetrahydrofolate cyclo-ligase family JOS54_RS04310 PF01458 Uncharacterized protein family (UPF0051) JOS54_RS04315 PF01592 NifU-like N terminal domain JOS54_RS04320 PF00266 Aminotransferase class-V JOS54_RS04325 PF01458 Uncharacterized protein family (UPF0051) JOS54_RS04330 PF00005 ABC transporter JOS54_RS04345 PF01230 HIT domain JOS54_RS04355 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JOS54_RS04360 PF13411 MerR HTH family regulatory protein JOS54_RS04370 PF02796 Helix-turn-helix domain of resolvase JOS54_RS04370 PF00239 Resolvase, N terminal domain JOS54_RS04410 PF02661 Fic/DOC family JOS54_RS04410 PF12728 Helix-turn-helix domain JOS54_RS04420 PF01555 DNA methylase JOS54_RS04435 PF00356 Bacterial regulatory proteins, lacI family JOS54_RS04445 PF03613 PTS system mannose/fructose/sorbose family IID component JOS54_RS04450 PF03609 PTS system sorbose-specific iic component JOS54_RS04455 PF03830 PTS system sorbose subfamily IIB component JOS54_RS04460 PF07470 Glycosyl Hydrolase Family 88 JOS54_RS04465 PF01081 KDPG and KHG aldolase JOS54_RS04470 PF00294 pfkB family carbohydrate kinase JOS54_RS04485 PF07685 CobB/CobQ-like glutamine amidotransferase domain JOS54_RS04490 PF08353 Domain of unknown function (DUF1727) JOS54_RS04490 PF08245 Mur ligase middle domain JOS54_RS04495 PF01336 OB-fold nucleic acid binding domain JOS54_RS04495 PF01966 HD domain JOS54_RS04500 PF13439 Glycosyltransferase Family 4 JOS54_RS04500 PF00534 Glycosyl transferases group 1 JOS54_RS04510 PF00534 Glycosyl transferases group 1 JOS54_RS04510 PF13439 Glycosyltransferase Family 4 JOS54_RS04515 PF01813 ATP synthase subunit D JOS54_RS04520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS54_RS04520 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOS54_RS04525 PF16886 ATPsynthase alpha/beta subunit N-term extension JOS54_RS04525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS54_RS04525 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOS54_RS04545 PF01496 V-type ATPase 116kDa subunit family JOS54_RS04560 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JOS54_RS04560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JOS54_RS04560 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JOS54_RS04560 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JOS54_RS04560 PF10371 Domain of unknown function JOS54_RS04565 PF03358 NADPH-dependent FMN reductase JOS54_RS04565 PF00890 FAD binding domain JOS54_RS04565 PF04205 FMN-binding domain JOS54_RS04570 PF03672 Uncharacterised protein family (UPF0154) JOS54_RS04585 PF00005 ABC transporter JOS54_RS04585 PF09383 NIL domain JOS54_RS04590 PF00392 Bacterial regulatory proteins, gntR family JOS54_RS04595 PF02938 GAD domain JOS54_RS04595 PF01336 OB-fold nucleic acid binding domain JOS54_RS04595 PF00152 tRNA synthetases class II (D, K and N) JOS54_RS04600 PF03129 Anticodon binding domain JOS54_RS04600 PF13393 Histidyl-tRNA synthetase JOS54_RS04605 PF04607 Region found in RelA / SpoT proteins JOS54_RS04605 PF13291 ACT domain JOS54_RS04605 PF02824 TGS domain JOS54_RS04610 PF00156 Phosphoribosyl transferase domain JOS54_RS04615 PF01368 DHH family JOS54_RS04615 PF17768 RecJ OB domain JOS54_RS04615 PF02272 DHHA1 domain JOS54_RS04615 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JOS54_RS04620 PF08245 Mur ligase middle domain JOS54_RS04625 PF13419 Haloacid dehalogenase-like hydrolase JOS54_RS04635 PF07549 SecD/SecF GG Motif JOS54_RS04635 PF02355 Protein export membrane protein JOS54_RS04645 PF00953 Glycosyl transferase family 4 JOS54_RS04650 PF03793 PASTA domain JOS54_RS04650 PF00905 Penicillin binding protein transpeptidase domain JOS54_RS04650 PF03717 Penicillin-binding Protein dimerisation domain JOS54_RS04660 PF01795 MraW methylase family JOS54_RS04665 PF02381 MraZ protein, putative antitoxin-like JOS54_RS04670 PF01783 Ribosomal L32p protein family JOS54_RS04680 PF05636 HIGH Nucleotidyl Transferase JOS54_RS04685 PF01709 Transcriptional regulator JOS54_RS04690 PF00149 Calcineurin-like phosphoesterase JOS54_RS04695 PF02896 PEP-utilising enzyme, TIM barrel domain JOS54_RS04695 PF05524 PEP-utilising enzyme, N-terminal JOS54_RS04695 PF00391 PEP-utilising enzyme, mobile domain JOS54_RS04705 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JOS54_RS04705 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JOS54_RS04710 PF00480 ROK family JOS54_RS04710 PF01047 MarR family JOS54_RS04715 PF03051 Peptidase C1-like family JOS54_RS04720 PF02190 ATP-dependent protease La (LON) substrate-binding domain JOS54_RS04720 PF05362 Lon protease (S16) C-terminal proteolytic domain JOS54_RS04720 PF00004 ATPase family associated with various cellular activities (AAA) JOS54_RS04725 PF12002 MgsA AAA+ ATPase C terminal JOS54_RS04725 PF05496 Holliday junction DNA helicase RuvB P-loop domain JOS54_RS04725 PF16193 AAA C-terminal domain JOS54_RS04785 PF02378 Phosphotransferase system, EIIC JOS54_RS04785 PF00367 phosphotransferase system, EIIB JOS54_RS04785 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JOS54_RS04790 PF03123 CAT RNA binding domain JOS54_RS04790 PF00874 PRD domain JOS54_RS04795 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JOS54_RS04795 PF02378 Phosphotransferase system, EIIC JOS54_RS04795 PF00367 phosphotransferase system, EIIB JOS54_RS04805 PF13416 Bacterial extracellular solute-binding protein JOS54_RS04810 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS04815 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS04820 PF00005 ABC transporter JOS54_RS04820 PF08402 TOBE domain JOS54_RS04825 PF01381 Helix-turn-helix JOS54_RS04830 PF00085 Thioredoxin JOS54_RS04835 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JOS54_RS04845 PF01515 Phosphate acetyl/butaryl transferase JOS54_RS04860 PF13333 Integrase core domain JOS54_RS04860 PF00665 Integrase core domain JOS54_RS04860 PF13276 HTH-like domain JOS54_RS04865 PF00118 TCP-1/cpn60 chaperonin family JOS54_RS04870 PF00166 Chaperonin 10 Kd subunit JOS54_RS04875 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JOS54_RS04875 PF01588 Putative tRNA binding domain JOS54_RS04875 PF03147 Ferredoxin-fold anticodon binding domain JOS54_RS04875 PF03483 B3/4 domain JOS54_RS04875 PF03484 tRNA synthetase B5 domain JOS54_RS04880 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JOS54_RS04880 PF01409 tRNA synthetases class II core domain (F) JOS54_RS04890 PF00708 Acylphosphatase JOS54_RS04900 PF00171 Aldehyde dehydrogenase family JOS54_RS04900 PF00465 Iron-containing alcohol dehydrogenase JOS54_RS04905 PF08032 RNA 2'-O ribose methyltransferase substrate binding JOS54_RS04905 PF00588 SpoU rRNA Methylase family JOS54_RS04910 PF08032 RNA 2'-O ribose methyltransferase substrate binding JOS54_RS04910 PF00588 SpoU rRNA Methylase family JOS54_RS04915 PF16325 Peptidase family U32 C-terminal domain JOS54_RS04915 PF01136 Peptidase family U32 JOS54_RS04945 PF07733 Bacterial DNA polymerase III alpha NTPase domain JOS54_RS04945 PF00929 Exonuclease JOS54_RS04945 PF11490 DNA polymerase III polC-type N-terminus II JOS54_RS04945 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JOS54_RS04945 PF14579 Helix-hairpin-helix motif JOS54_RS04945 PF02811 PHP domain JOS54_RS04950 PF01022 Bacterial regulatory protein, arsR family JOS54_RS04960 PF01702 Queuine tRNA-ribosyltransferase JOS54_RS04965 PF02547 Queuosine biosynthesis protein JOS54_RS04970 PF02677 Epoxyqueuosine reductase QueH JOS54_RS04985 PF00781 Diacylglycerol kinase catalytic domain JOS54_RS04990 PF00753 Metallo-beta-lactamase superfamily JOS54_RS04995 PF01368 DHH family JOS54_RS04995 PF07085 DRTGG domain JOS54_RS04995 PF00571 CBS domain JOS54_RS04995 PF02833 DHHA2 domain JOS54_RS05000 PF00557 Metallopeptidase family M24 JOS54_RS05005 PF00692 dUTPase JOS54_RS05015 PF01820 D-ala D-ala ligase N-terminus JOS54_RS05015 PF07478 D-ala D-ala ligase C-terminus JOS54_RS05020 PF01048 Phosphorylase superfamily JOS54_RS05030 PF01336 OB-fold nucleic acid binding domain JOS54_RS05030 PF00152 tRNA synthetases class II (D, K and N) JOS54_RS05035 PF00145 C-5 cytosine-specific DNA methylase JOS54_RS05040 PF09504 Bsp6I restriction endonuclease JOS54_RS05045 PF03577 Peptidase family C69 JOS54_RS05060 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JOS54_RS05060 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JOS54_RS05065 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JOS54_RS05065 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JOS54_RS05065 PF00378 Enoyl-CoA hydratase/isomerase JOS54_RS05070 PF03309 Type III pantothenate kinase JOS54_RS05075 PF02441 Flavoprotein JOS54_RS05075 PF04127 DNA / pantothenate metabolism flavoprotein JOS54_RS05080 PF12850 Calcineurin-like phosphoesterase superfamily domain JOS54_RS05100 PF01156 Inosine-uridine preferring nucleoside hydrolase JOS54_RS05105 PF01156 Inosine-uridine preferring nucleoside hydrolase JOS54_RS05110 PF02653 Branched-chain amino acid transport system / permease component JOS54_RS05115 PF02653 Branched-chain amino acid transport system / permease component JOS54_RS05120 PF00005 ABC transporter JOS54_RS05125 PF02608 ABC transporter substrate-binding protein PnrA-like JOS54_RS05130 PF00962 Adenosine/AMP deaminase JOS54_RS05135 PF01048 Phosphorylase superfamily JOS54_RS05140 PF00294 pfkB family carbohydrate kinase JOS54_RS05145 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JOS54_RS05145 PF00056 lactate/malate dehydrogenase, NAD binding domain JOS54_RS05150 PF01171 PP-loop family JOS54_RS05155 PF02690 Na+/Pi-cotransporter JOS54_RS05170 PF00730 HhH-GPD superfamily base excision DNA repair protein JOS54_RS05170 PF14815 NUDIX domain JOS54_RS05175 PF01048 Phosphorylase superfamily JOS54_RS05195 PF00072 Response regulator receiver domain JOS54_RS05200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS54_RS05200 PF00672 HAMP domain JOS54_RS05200 PF06580 Histidine kinase JOS54_RS05200 PF02743 Cache domain JOS54_RS05205 PF04205 FMN-binding domain JOS54_RS05205 PF00890 FAD binding domain JOS54_RS05210 PF00367 phosphotransferase system, EIIB JOS54_RS05210 PF02378 Phosphotransferase system, EIIC JOS54_RS05215 PF01546 Peptidase family M20/M25/M40 JOS54_RS05220 PF05043 Mga helix-turn-helix domain JOS54_RS05220 PF00874 PRD domain JOS54_RS05220 PF08279 HTH domain JOS54_RS05220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS54_RS05230 PF00834 Ribulose-phosphate 3 epimerase family JOS54_RS05240 PF00465 Iron-containing alcohol dehydrogenase JOS54_RS05255 PF01869 BadF/BadG/BcrA/BcrD ATPase family JOS54_RS05265 PF03459 TOBE domain JOS54_RS05265 PF17912 MalK OB fold domain JOS54_RS05265 PF00005 ABC transporter JOS54_RS05270 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS05285 PF02056 Family 4 glycosyl hydrolase JOS54_RS05285 PF11975 Family 4 glycosyl hydrolase C-terminal domain JOS54_RS05290 PF00356 Bacterial regulatory proteins, lacI family JOS54_RS05295 PF03600 Citrate transporter JOS54_RS05305 PF01769 Divalent cation transporter JOS54_RS05305 PF03448 MgtE intracellular N domain JOS54_RS05305 PF00571 CBS domain JOS54_RS05320 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) JOS54_RS05325 PF01220 Dehydroquinase class II JOS54_RS05330 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JOS54_RS05335 PF00793 DAHP synthetase I family JOS54_RS05335 PF18152 DAHP synthase ferredoxin-like domain JOS54_RS05340 PF08501 Shikimate dehydrogenase substrate binding domain JOS54_RS05345 PF01264 Chorismate synthase JOS54_RS05350 PF01761 3-dehydroquinate synthase JOS54_RS05360 PF08546 Ketopantoate reductase PanE/ApbA C terminal JOS54_RS05360 PF02558 Ketopantoate reductase PanE/ApbA JOS54_RS05380 PF00950 ABC 3 transport family JOS54_RS05385 PF00005 ABC transporter JOS54_RS05390 PF01297 Zinc-uptake complex component A periplasmic JOS54_RS05425 PF01965 DJ-1/PfpI family JOS54_RS05435 PF04205 FMN-binding domain JOS54_RS05435 PF03358 NADPH-dependent FMN reductase JOS54_RS05435 PF00890 FAD binding domain JOS54_RS05440 PF04060 Putative Fe-S cluster JOS54_RS05450 PF02508 Rnf-Nqr subunit, membrane protein JOS54_RS05455 PF02508 Rnf-Nqr subunit, membrane protein JOS54_RS05465 PF03116 NQR2, RnfD, RnfE family JOS54_RS05470 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JOS54_RS05470 PF13237 4Fe-4S dicluster domain JOS54_RS05470 PF13375 RnfC Barrel sandwich hybrid domain JOS54_RS05470 PF10531 SLBB domain JOS54_RS05480 PF00890 FAD binding domain JOS54_RS05480 PF04205 FMN-binding domain JOS54_RS05485 PF01554 MatE JOS54_RS05490 PF00342 Phosphoglucose isomerase JOS54_RS05495 PF00575 S1 RNA binding domain JOS54_RS05500 PF01106 NifU-like domain JOS54_RS05505 PF01594 AI-2E family transporter JOS54_RS05510 PF02773 S-adenosylmethionine synthetase, C-terminal domain JOS54_RS05510 PF02772 S-adenosylmethionine synthetase, central domain JOS54_RS05510 PF00438 S-adenosylmethionine synthetase, N-terminal domain JOS54_RS05515 PF00890 FAD binding domain JOS54_RS05515 PF14537 Cytochrome c3 JOS54_RS05520 PF08264 Anticodon-binding domain of tRNA JOS54_RS05520 PF00133 tRNA synthetases class I (I, L, M and V) JOS54_RS05520 PF06827 Zinc finger found in FPG and IleRS JOS54_RS05535 PF04472 Cell division protein SepF JOS54_RS05545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS54_RS05545 PF00005 ABC transporter JOS54_RS05550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS54_RS05550 PF00005 ABC transporter JOS54_RS05555 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS05555 PF12911 N-terminal TM domain of oligopeptide transport permease C JOS54_RS05560 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS05565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS54_RS05695 PF00717 Peptidase S24-like JOS54_RS05695 PF01726 LexA DNA binding domain JOS54_RS05705 PF02899 Phage integrase, N-terminal SAM-like domain JOS54_RS05705 PF00589 Phage integrase family JOS54_RS05725 PF08245 Mur ligase middle domain JOS54_RS05725 PF01225 Mur ligase family, catalytic domain JOS54_RS05725 PF02875 Mur ligase family, glutamate ligase domain JOS54_RS05730 PF00561 alpha/beta hydrolase fold JOS54_RS05735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS54_RS05735 PF00672 HAMP domain JOS54_RS05735 PF00512 His Kinase A (phospho-acceptor) domain JOS54_RS05740 PF00486 Transcriptional regulatory protein, C terminal JOS54_RS05740 PF00072 Response regulator receiver domain JOS54_RS05745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOS54_RS05745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOS54_RS05745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOS54_RS05745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOS54_RS05755 PF02457 DisA bacterial checkpoint controller nucleotide-binding JOS54_RS05770 PF02796 Helix-turn-helix domain of resolvase JOS54_RS05770 PF00239 Resolvase, N terminal domain JOS54_RS05910 PF01555 DNA methylase JOS54_RS05985 PF01381 Helix-turn-helix JOS54_RS05990 PF01726 LexA DNA binding domain JOS54_RS05990 PF00717 Peptidase S24-like JOS54_RS05995 PF14659 Phage integrase, N-terminal SAM-like domain JOS54_RS05995 PF00589 Phage integrase family JOS54_RS06005 PF02545 Maf-like protein JOS54_RS06010 PF00483 Nucleotidyl transferase JOS54_RS06010 PF14602 Hexapeptide repeat of succinyl-transferase JOS54_RS06010 PF00132 Bacterial transferase hexapeptide (six repeats) JOS54_RS06035 PF05958 tRNA (Uracil-5-)-methyltransferase JOS54_RS06035 PF01938 TRAM domain JOS54_RS06045 PF07508 Recombinase JOS54_RS06045 PF00239 Resolvase, N terminal domain JOS54_RS06075 PF01381 Helix-turn-helix JOS54_RS06095 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JOS54_RS06095 PF01348 Type II intron maturase JOS54_RS06105 PF01420 Type I restriction modification DNA specificity domain JOS54_RS06115 PF02899 Phage integrase, N-terminal SAM-like domain JOS54_RS06115 PF00589 Phage integrase family JOS54_RS06140 PF18766 SWI2/SNF2 ATPase JOS54_RS06140 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JOS54_RS06140 PF12008 Type I restriction and modification enzyme - subunit R C terminal JOS54_RS06160 PF00145 C-5 cytosine-specific DNA methylase JOS54_RS06165 PF01131 DNA topoisomerase JOS54_RS06165 PF01751 Toprim domain JOS54_RS06245 PF01695 IstB-like ATP binding protein JOS54_RS06255 PF00958 GMP synthase C terminal domain JOS54_RS06255 PF03352 Methyladenine glycosylase JOS54_RS06255 PF00117 Glutamine amidotransferase class-I JOS54_RS06255 PF13302 Acetyltransferase (GNAT) domain JOS54_RS06255 PF13673 Acetyltransferase (GNAT) domain JOS54_RS06270 PF05958 tRNA (Uracil-5-)-methyltransferase JOS54_RS06270 PF01938 TRAM domain JOS54_RS06280 PF02934 GatB/GatE catalytic domain JOS54_RS06280 PF02637 GatB domain JOS54_RS06285 PF01425 Amidase JOS54_RS06295 PF12826 Helix-hairpin-helix motif JOS54_RS06295 PF03120 NAD-dependent DNA ligase OB-fold domain JOS54_RS06295 PF01653 NAD-dependent DNA ligase adenylation domain JOS54_RS06295 PF00533 BRCA1 C Terminus (BRCT) domain JOS54_RS06300 PF13361 UvrD-like helicase C-terminal domain JOS54_RS06300 PF00580 UvrD/REP helicase N-terminal domain JOS54_RS06305 PF02926 THUMP domain JOS54_RS06305 PF01170 Putative RNA methylase family UPF0020 JOS54_RS06305 PF10672 S-adenosylmethionine-dependent methyltransferase JOS54_RS06310 PF01479 S4 domain JOS54_RS06310 PF00849 RNA pseudouridylate synthase JOS54_RS06325 PF13091 PLD-like domain JOS54_RS06345 PF00294 pfkB family carbohydrate kinase JOS54_RS06350 PF07687 Peptidase dimerisation domain JOS54_RS06350 PF01546 Peptidase family M20/M25/M40 JOS54_RS06355 PF00009 Elongation factor Tu GTP binding domain JOS54_RS06355 PF00679 Elongation factor G C-terminus JOS54_RS06355 PF03144 Elongation factor Tu domain 2 JOS54_RS06365 PF07683 Cobalamin synthesis protein cobW C-terminal domain JOS54_RS06365 PF02492 CobW/HypB/UreG, nucleotide-binding domain JOS54_RS06375 PF00135 Carboxylesterase family JOS54_RS06395 PF01168 Alanine racemase, N-terminal domain JOS54_RS06395 PF00842 Alanine racemase, C-terminal domain JOS54_RS06415 PF03466 LysR substrate binding domain JOS54_RS06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS54_RS06420 PF00664 ABC transporter transmembrane region JOS54_RS06420 PF00005 ABC transporter JOS54_RS06425 PF00664 ABC transporter transmembrane region JOS54_RS06425 PF00005 ABC transporter JOS54_RS06460 PF03932 CutC family JOS54_RS06465 PF01112 Asparaginase JOS54_RS06470 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JOS54_RS06470 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JOS54_RS06480 PF03448 MgtE intracellular N domain JOS54_RS06480 PF00571 CBS domain JOS54_RS06480 PF01769 Divalent cation transporter JOS54_RS06490 PF01546 Peptidase family M20/M25/M40 JOS54_RS06495 PF05343 M42 glutamyl aminopeptidase JOS54_RS06510 PF02378 Phosphotransferase system, EIIC JOS54_RS06515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS54_RS06525 PF18766 SWI2/SNF2 ATPase JOS54_RS06525 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JOS54_RS06525 PF12008 Type I restriction and modification enzyme - subunit R C terminal JOS54_RS06530 PF01420 Type I restriction modification DNA specificity domain JOS54_RS06535 PF01420 Type I restriction modification DNA specificity domain JOS54_RS06555 PF02384 N-6 DNA Methylase JOS54_RS06555 PF12161 HsdM N-terminal domain JOS54_RS06605 PF02384 N-6 DNA Methylase JOS54_RS06665 PF13333 Integrase core domain JOS54_RS06665 PF13276 HTH-like domain JOS54_RS06665 PF00665 Integrase core domain JOS54_RS06695 PF00117 Glutamine amidotransferase class-I JOS54_RS06695 PF02540 NAD synthase JOS54_RS06695 PF00958 GMP synthase C terminal domain JOS54_RS06700 PF03180 NLPA lipoprotein JOS54_RS06705 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS06710 PF00005 ABC transporter JOS54_RS06710 PF09383 NIL domain JOS54_RS06715 PF00581 Rhodanese-like domain JOS54_RS06720 PF02673 Bacitracin resistance protein BacA JOS54_RS06725 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JOS54_RS06735 PF00216 Bacterial DNA-binding protein JOS54_RS06750 PF01048 Phosphorylase superfamily JOS54_RS06755 PF01048 Phosphorylase superfamily JOS54_RS06760 PF02906 Iron only hydrogenase large subunit, C-terminal domain JOS54_RS06760 PF02256 Iron hydrogenase small subunit JOS54_RS06760 PF00037 4Fe-4S binding domain JOS54_RS06760 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JOS54_RS06765 PF00005 ABC transporter JOS54_RS06765 PF08402 TOBE domain JOS54_RS06790 PF00743 Flavin-binding monooxygenase-like JOS54_RS06805 PF01546 Peptidase family M20/M25/M40 JOS54_RS06810 PF03372 Endonuclease/Exonuclease/phosphatase family JOS54_RS06815 PF01321 Creatinase/Prolidase N-terminal domain JOS54_RS06815 PF00557 Metallopeptidase family M24 JOS54_RS06825 PF09297 NADH pyrophosphatase zinc ribbon domain JOS54_RS06825 PF00293 NUDIX domain JOS54_RS06835 PF02810 SEC-C motif JOS54_RS06835 PF07517 SecA DEAD-like domain JOS54_RS06835 PF01043 SecA preprotein cross-linking domain JOS54_RS06835 PF07516 SecA Wing and Scaffold domain JOS54_RS06840 PF00156 Phosphoribosyl transferase domain JOS54_RS06850 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JOS54_RS06870 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JOS54_RS06870 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JOS54_RS06880 PF00664 ABC transporter transmembrane region JOS54_RS06880 PF00005 ABC transporter JOS54_RS06885 PF00005 ABC transporter JOS54_RS06885 PF00664 ABC transporter transmembrane region JOS54_RS06890 PF18652 Adhesin P1 N-terminal domain JOS54_RS06890 PF17998 Cell surface antigen I/II C2 terminal domain JOS54_RS06890 PF16364 Cell surface antigen C-terminus JOS54_RS06890 PF08363 Glucan-binding protein C JOS54_RS06890 PF00746 LPXTG cell wall anchor motif JOS54_RS06890 PF06696 Streptococcal surface antigen repeat JOS54_RS06895 PF01625 Peptide methionine sulfoxide reductase JOS54_RS06900 PF17674 HHH domain JOS54_RS06900 PF00575 S1 RNA binding domain JOS54_RS06900 PF09371 Tex-like protein N-terminal domain JOS54_RS06900 PF16921 Tex protein YqgF-like domain JOS54_RS06905 PF01145 SPFH domain / Band 7 family JOS54_RS06920 PF06250 YhcG PDDEXK nuclease domain JOS54_RS06920 PF17761 DUF1016 N-terminal domain JOS54_RS06925 PF13276 HTH-like domain JOS54_RS06925 PF00665 Integrase core domain JOS54_RS06925 PF13333 Integrase core domain JOS54_RS06930 PF13476 AAA domain JOS54_RS06935 PF00149 Calcineurin-like phosphoesterase JOS54_RS06935 PF12320 Type 5 capsule protein repressor C-terminal domain JOS54_RS06960 PF02127 Aminopeptidase I zinc metalloprotease (M18) JOS54_RS06965 PF02073 Thermophilic metalloprotease (M29) JOS54_RS07000 PF02779 Transketolase, pyrimidine binding domain JOS54_RS07000 PF02780 Transketolase, C-terminal domain JOS54_RS07005 PF00456 Transketolase, thiamine diphosphate binding domain JOS54_RS07010 PF02687 FtsX-like permease family JOS54_RS07015 PF00005 ABC transporter JOS54_RS07020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS54_RS07025 PF00486 Transcriptional regulatory protein, C terminal JOS54_RS07025 PF00072 Response regulator receiver domain JOS54_RS07035 PF00072 Response regulator receiver domain JOS54_RS07035 PF00486 Transcriptional regulatory protein, C terminal JOS54_RS07045 PF08271 TFIIB zinc-binding JOS54_RS07055 PF01596 O-methyltransferase JOS54_RS07070 PF01593 Flavin containing amine oxidoreductase JOS54_RS07075 PF00480 ROK family JOS54_RS07085 PF01968 Hydantoinase/oxoprolinase JOS54_RS07085 PF05378 Hydantoinase/oxoprolinase N-terminal region JOS54_RS07095 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase JOS54_RS07100 PF00480 ROK family JOS54_RS07105 PF00132 Bacterial transferase hexapeptide (six repeats) JOS54_RS07110 PF00291 Pyridoxal-phosphate dependent enzyme JOS54_RS07115 PF01196 Ribosomal protein L17 JOS54_RS07120 PF01000 RNA polymerase Rpb3/RpoA insert domain JOS54_RS07120 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JOS54_RS07120 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JOS54_RS07125 PF00411 Ribosomal protein S11 JOS54_RS07130 PF00416 Ribosomal protein S13/S18 JOS54_RS07135 PF00444 Ribosomal protein L36 JOS54_RS07140 PF01176 Translation initiation factor 1A / IF-1 JOS54_RS07145 PF05191 Adenylate kinase, active site lid JOS54_RS07150 PF00344 SecY translocase JOS54_RS07155 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JOS54_RS07160 PF03719 Ribosomal protein S5, C-terminal domain JOS54_RS07160 PF00333 Ribosomal protein S5, N-terminal domain JOS54_RS07165 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JOS54_RS07170 PF00347 Ribosomal protein L6 JOS54_RS07175 PF00410 Ribosomal protein S8 JOS54_RS07180 PF00253 Ribosomal protein S14p/S29e JOS54_RS07185 PF00281 Ribosomal protein L5 JOS54_RS07185 PF00673 ribosomal L5P family C-terminus JOS54_RS07190 PF00467 KOW motif JOS54_RS07190 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JOS54_RS07195 PF00238 Ribosomal protein L14p/L23e JOS54_RS07200 PF00366 Ribosomal protein S17 JOS54_RS07205 PF00831 Ribosomal L29 protein JOS54_RS07210 PF00252 Ribosomal protein L16p/L10e JOS54_RS07215 PF00189 Ribosomal protein S3, C-terminal domain JOS54_RS07215 PF07650 KH domain JOS54_RS07220 PF00237 Ribosomal protein L22p/L17e JOS54_RS07225 PF00203 Ribosomal protein S19 JOS54_RS07230 PF00181 Ribosomal Proteins L2, RNA binding domain JOS54_RS07230 PF03947 Ribosomal Proteins L2, C-terminal domain JOS54_RS07235 PF00276 Ribosomal protein L23 JOS54_RS07240 PF00573 Ribosomal protein L4/L1 family JOS54_RS07245 PF00297 Ribosomal protein L3 JOS54_RS07250 PF00338 Ribosomal protein S10p/S20e JOS54_RS07265 PF13419 Haloacid dehalogenase-like hydrolase JOS54_RS07270 PF08013 Tagatose 6 phosphate kinase JOS54_RS07285 PF03613 PTS system mannose/fructose/sorbose family IID component JOS54_RS07290 PF03609 PTS system sorbose-specific iic component JOS54_RS07295 PF03830 PTS system sorbose subfamily IIB component JOS54_RS07310 PF01380 SIS domain JOS54_RS07315 PF01979 Amidohydrolase family JOS54_RS07325 PF00009 Elongation factor Tu GTP binding domain JOS54_RS07325 PF03143 Elongation factor Tu C-terminal domain JOS54_RS07325 PF03144 Elongation factor Tu domain 2 JOS54_RS07330 PF03144 Elongation factor Tu domain 2 JOS54_RS07330 PF00009 Elongation factor Tu GTP binding domain JOS54_RS07330 PF03764 Elongation factor G, domain IV JOS54_RS07330 PF00679 Elongation factor G C-terminus JOS54_RS07330 PF14492 Elongation Factor G, domain II JOS54_RS07335 PF00177 Ribosomal protein S7p/S5e JOS54_RS07340 PF00164 Ribosomal protein S12/S23 JOS54_RS07345 PF03459 TOBE domain JOS54_RS07345 PF17912 MalK OB fold domain JOS54_RS07345 PF00005 ABC transporter JOS54_RS07350 PF02446 4-alpha-glucanotransferase JOS54_RS07355 PF00356 Bacterial regulatory proteins, lacI family JOS54_RS07360 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS07365 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS07375 PF00343 Carbohydrate phosphorylase JOS54_RS07390 PF13635 Domain of unknown function (DUF4143) JOS54_RS07390 PF13173 AAA domain JOS54_RS07395 PF05737 Collagen binding domain JOS54_RS07395 PF05738 Cna protein B-type domain JOS54_RS07395 PF17802 Prealbumin-like fold domain JOS54_RS07435 PF16916 Dimerisation domain of Zinc Transporter JOS54_RS07435 PF01545 Cation efflux family JOS54_RS07440 PF01047 MarR family JOS54_RS07445 PF03590 Aspartate-ammonia ligase JOS54_RS07455 PF03551 Transcriptional regulator PadR-like family JOS54_RS07465 PF04055 Radical SAM superfamily JOS54_RS07470 PF01228 Glycine radical JOS54_RS07470 PF02901 Pyruvate formate lyase-like JOS54_RS07475 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS54_RS07480 PF00005 ABC transporter JOS54_RS07485 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS07490 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JOS54_RS07490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JOS54_RS07505 PF09515 Thiamine transporter protein (Thia_YuaJ) JOS54_RS07540 PF02386 Cation transport protein JOS54_RS07545 PF02254 TrkA-N domain JOS54_RS07545 PF02080 TrkA-C domain JOS54_RS07555 PF01027 Inhibitor of apoptosis-promoting Bax1 JOS54_RS07565 PF08676 MutL C terminal dimerisation domain JOS54_RS07565 PF01119 DNA mismatch repair protein, C-terminal domain JOS54_RS07570 PF09186 Domain of unknown function (DUF1949) JOS54_RS07570 PF01205 Uncharacterized protein family UPF0029 JOS54_RS07575 PF02278 Polysaccharide lyase family 8, super-sandwich domain JOS54_RS07575 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain JOS54_RS07575 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain JOS54_RS07590 PF05816 Toxic anion resistance protein (TelA) JOS54_RS07595 PF01757 Acyltransferase family JOS54_RS07600 PF01757 Acyltransferase family JOS54_RS07605 PF00004 ATPase family associated with various cellular activities (AAA) JOS54_RS07605 PF17866 AAA lid domain JOS54_RS07615 PF00145 C-5 cytosine-specific DNA methylase JOS54_RS07650 PF00005 ABC transporter JOS54_RS07665 PF12705 PD-(D/E)XK nuclease superfamily JOS54_RS07670 PF00580 UvrD/REP helicase N-terminal domain JOS54_RS07670 PF12705 PD-(D/E)XK nuclease superfamily JOS54_RS07670 PF13361 UvrD-like helicase C-terminal domain JOS54_RS07700 PF02086 D12 class N6 adenine-specific DNA methyltransferase JOS54_RS07710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS54_RS07710 PF00512 His Kinase A (phospho-acceptor) domain JOS54_RS07715 PF00072 Response regulator receiver domain JOS54_RS07715 PF00486 Transcriptional regulatory protein, C terminal JOS54_RS07720 PF02915 Rubrerythrin JOS54_RS07725 PF01475 Ferric uptake regulator family JOS54_RS07730 PF08367 Peptidase M16C associated JOS54_RS07730 PF00675 Insulinase (Peptidase family M16) JOS54_RS07730 PF05193 Peptidase M16 inactive domain JOS54_RS07740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOS54_RS07745 PF04468 PSP1 C-terminal conserved region JOS54_RS07750 PF09115 DNA polymerase III, delta subunit, C terminal JOS54_RS07755 PF02223 Thymidylate kinase JOS54_RS07775 PF00005 ABC transporter JOS54_RS07780 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS07785 PF00528 Binding-protein-dependent transport system inner membrane component JOS54_RS07790 PF13350 Tyrosine phosphatase family JOS54_RS07795 PF00149 Calcineurin-like phosphoesterase JOS54_RS07795 PF02872 5'-nucleotidase, C-terminal domain JOS54_RS07810 PF01479 S4 domain JOS54_RS07815 PF17757 UvrB interaction domain JOS54_RS07815 PF03461 TRCF domain JOS54_RS07815 PF00271 Helicase conserved C-terminal domain JOS54_RS07815 PF00270 DEAD/DEAH box helicase JOS54_RS07815 PF02559 CarD-like/TRCF domain JOS54_RS07820 PF01195 Peptidyl-tRNA hydrolase JOS54_RS07835 PF00468 Ribosomal protein L34 JOS54_RS07840 PF00825 Ribonuclease P JOS54_RS07845 PF02096 60Kd inner membrane protein JOS54_RS07850 PF01424 R3H domain JOS54_RS07850 PF14804 Jag N-terminus