locus-tag	class	description
BAMMC406_RS00010	COG0592	DNA-directed DNA polymerase activity
BAMMC406_RS00035	COG1674	ftsk spoiiie
BAMMC406_RS00095	COG0753	catalase activity
BAMMC406_RS00130	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BAMMC406_RS00135	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BAMMC406_RS00140	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
BAMMC406_RS00175	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BAMMC406_RS00190	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BAMMC406_RS00210	COG1987	bacterial-type flagellum assembly
BAMMC406_RS00240	COG1346	cytolysis
BAMMC406_RS00245	COG1380	Effector of murein hydrolase LrgA
BAMMC406_RS00250	COG0583	DNA-binding transcription factor activity
BAMMC406_RS00255	COG2814	Major facilitator Superfamily
BAMMC406_RS00305	COG2165	general secretion pathway protein
BAMMC406_RS00320	COG1459	type II secretion system
BAMMC406_RS00340	COG0523	cobalamin synthesis protein
BAMMC406_RS00370	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BAMMC406_RS00370	COG0519	Catalyzes the synthesis of GMP from XMP
BAMMC406_RS00375	COG1902	pentaerythritol trinitrate reductase activity
BAMMC406_RS00385	COG0642	Histidine kinase
BAMMC406_RS00405	COG3186	Phenylalanine-4-hydroxylase
BAMMC406_RS00410	COG1522	sequence-specific DNA binding
BAMMC406_RS00435	COG0583	DNA-binding transcription factor activity
BAMMC406_RS00505	COG1192	Involved in chromosome partitioning
BAMMC406_RS00510	COG1475	DNA binding
BAMMC406_RS00515	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BAMMC406_RS00525	COG0356	it plays a direct role in the translocation of protons across the membrane
BAMMC406_RS00565	COG0318	PFAM AMP-dependent synthetase and ligase
BAMMC406_RS00575	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BAMMC406_RS00580	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BAMMC406_RS00585	COG0506	proline dehydrogenase activity
BAMMC406_RS00585	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
BAMMC406_RS00585	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
BAMMC406_RS00590	COG0683	leucine binding
BAMMC406_RS00610	COG1960	acyl-CoA dehydrogenase activity
BAMMC406_RS00620	COG0436	Aminotransferase
BAMMC406_RS00625	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMMC406_RS00640	COG0789	Transcriptional regulator
BAMMC406_RS00660	COG0668	transmembrane transport
BAMMC406_RS00670	COG0531	amino acid
BAMMC406_RS00680	COG4302	ethanolamine ammonia-lyase activity
BAMMC406_RS00685	COG0583	DNA-binding transcription factor activity
BAMMC406_RS00690	COG0477	Major facilitator Superfamily
BAMMC406_RS00700	COG1012	belongs to the aldehyde dehydrogenase family
BAMMC406_RS00710	COG2207	Transcriptional regulator
BAMMC406_RS00720	COG0028	Belongs to the TPP enzyme family
BAMMC406_RS00735	COG1760	l-serine dehydratase
BAMMC406_RS00765	COG0673	inositol 2-dehydrogenase activity
BAMMC406_RS00775	COG0210	DNA helicase
BAMMC406_RS00780	COG3245	cytochrome
BAMMC406_RS00790	COG0582	viral genome integration into host DNA
BAMMC406_RS00815	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BAMMC406_RS00820	COG4106	trans-aconitate 2-methyltransferase activity
BAMMC406_RS00890	COG0519	Catalyzes the synthesis of GMP from XMP
BAMMC406_RS00900	COG0561	phosphatase activity
BAMMC406_RS00905	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BAMMC406_RS00910	COG2916	Histone family protein nucleoid-structuring protein H-NS
BAMMC406_RS00915	COG0438	transferase activity, transferring glycosyl groups
BAMMC406_RS00935	COG1360	Flagellar Motor Protein
BAMMC406_RS00940	COG0745	RESPONSE REGULATOR receiver
BAMMC406_RS00945	COG2198	Histidine kinase
BAMMC406_RS00945	COG0643	Histidine kinase
BAMMC406_RS00950	COG0835	chemotaxis
BAMMC406_RS00960	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BAMMC406_RS00975	COG0745	RESPONSE REGULATOR receiver
BAMMC406_RS00980	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
BAMMC406_RS01000	COG3152	Membrane
BAMMC406_RS01005	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BAMMC406_RS01010	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BAMMC406_RS01035	COG1950	PFAM Membrane protein of
BAMMC406_RS01040	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BAMMC406_RS01055	COG2070	2-Nitropropane dioxygenase
BAMMC406_RS01085	COG1522	sequence-specific DNA binding
BAMMC406_RS01095	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMMC406_RS01110	COG0792	nuclease activity
BAMMC406_RS01115	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
BAMMC406_RS01120	COG2823	Periplasmic or secreted lipoprotein
BAMMC406_RS01160	COG2271	Major facilitator Superfamily
BAMMC406_RS01170	COG3670	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
BAMMC406_RS01175	COG0577	efflux transmembrane transporter activity
BAMMC406_RS01185	COG1136	(ABC) transporter
BAMMC406_RS01185	COG0577	efflux transmembrane transporter activity
BAMMC406_RS01205	COG2084	Dehydrogenase
BAMMC406_RS01210	COG1280	lysine exporter protein (LysE YggA)
BAMMC406_RS01215	COG2814	Major facilitator Superfamily
BAMMC406_RS01240	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BAMMC406_RS01250	COG1881	PFAM PEBP family protein
BAMMC406_RS01255	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BAMMC406_RS01260	COG0280	phosphate acetyltransferase
BAMMC406_RS01260	COG0281	malic enzyme
BAMMC406_RS01280	COG1522	sequence-specific DNA binding
BAMMC406_RS01305	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BAMMC406_RS01310	COG2151	metal-sulfur cluster biosynthetic enzyme
BAMMC406_RS01315	COG3396	Phenylacetate-CoA oxygenase
BAMMC406_RS01320	COG3460	Phenylacetate-CoA oxygenase
BAMMC406_RS01325	COG3396	Phenylacetate-CoA oxygenase
BAMMC406_RS01375	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BAMMC406_RS01385	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BAMMC406_RS01395	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BAMMC406_RS01425	COG0514	ATP-dependent DNA helicase (RecQ)
BAMMC406_RS01445	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BAMMC406_RS01455	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BAMMC406_RS01500	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BAMMC406_RS01505	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BAMMC406_RS01550	COG0200	Binds to the 23S rRNA
BAMMC406_RS01555	COG0201	protein transport
BAMMC406_RS01570	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BAMMC406_RS01600	COG4232	protein-disulfide reductase activity
BAMMC406_RS01620	COG1333	cytochrome c biogenesis protein
BAMMC406_RS01625	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BAMMC406_RS01630	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BAMMC406_RS01635	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BAMMC406_RS01685	COG0232	Belongs to the dGTPase family. Type 2 subfamily
BAMMC406_RS01690	COG1653	transport
BAMMC406_RS01695	COG1175	transmembrane transport
BAMMC406_RS01700	COG0395	ABC-type sugar transport system, permease component
BAMMC406_RS01705	COG3842	ATPase activity
BAMMC406_RS01710	COG0584	glycerophosphoryl diester phosphodiesterase
BAMMC406_RS01725	COG0067	glutamate synthase
BAMMC406_RS01725	COG0069	glutamate synthase activity
BAMMC406_RS01725	COG0070	glutamate synthase
BAMMC406_RS01745	COG1115	amino acid carrier protein
BAMMC406_RS01750	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
BAMMC406_RS01755	COG4178	(ABC) transporter
BAMMC406_RS01780	COG1127	ABC transporter
BAMMC406_RS01785	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BAMMC406_RS01790	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BAMMC406_RS01810	COG1131	(ABC) transporter
BAMMC406_RS01815	COG0842	Transport permease protein
BAMMC406_RS01850	COG2095	MarC family integral membrane protein
BAMMC406_RS01890	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BAMMC406_RS01895	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BAMMC406_RS01900	COG0805	protein transport
BAMMC406_RS01905	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMMC406_RS01910	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BAMMC406_RS01915	COG0723	plastoquinol--plastocyanin reductase activity
BAMMC406_RS01920	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BAMMC406_RS01925	COG2857	Cytochrome c1
BAMMC406_RS01930	COG0625	glutathione transferase activity
BAMMC406_RS01935	COG2969	positive regulation of protein catabolic process
BAMMC406_RS01950	COG2831	hemolysin activation secretion protein
BAMMC406_RS01975	COG3328	transposase activity
BAMMC406_RS01985	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMMC406_RS02175	COG0308	aminopeptidase N
BAMMC406_RS02200	COG1309	transcriptional regulator
BAMMC406_RS02215	COG0443	Heat shock 70 kDa protein
BAMMC406_RS02220	COG1278	Cold shock
BAMMC406_RS02225	COG0531	amino acid
BAMMC406_RS02230	COG3384	dioxygenase
BAMMC406_RS02240	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BAMMC406_RS02245	COG2890	protein-(glutamine-N5) methyltransferase activity
BAMMC406_RS02270	COG0006	proline dipeptidase activity
BAMMC406_RS02275	COG1335	isochorismatase
BAMMC406_RS02285	COG0488	(ABC) transporter
BAMMC406_RS02295	COG0583	DNA-binding transcription factor activity
BAMMC406_RS02315	COG0012	GTP binding
BAMMC406_RS02320	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BAMMC406_RS02325	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BAMMC406_RS02340	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BAMMC406_RS02360	COG0512	Glutamine amidotransferase of anthranilate synthase
BAMMC406_RS02370	COG0546	phosphoglycolate phosphatase activity
BAMMC406_RS02375	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BAMMC406_RS02380	COG2967	ApaG domain
BAMMC406_RS02385	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
BAMMC406_RS02395	COG2050	protein possibly involved in aromatic compounds catabolism
BAMMC406_RS02400	COG1024	Enoyl-CoA hydratase
BAMMC406_RS02415	COG1024	Enoyl-CoA hydratase
BAMMC406_RS02445	COG0243	molybdopterin cofactor binding
BAMMC406_RS02450	COG0318	PFAM AMP-dependent synthetase and ligase
BAMMC406_RS02455	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BAMMC406_RS02475	COG3116	cell division
BAMMC406_RS02485	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BAMMC406_RS02490	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BAMMC406_RS02525	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BAMMC406_RS02540	COG0678	peroxiredoxin activity
BAMMC406_RS02575	COG0494	nUDIX hydrolase
BAMMC406_RS02580	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
BAMMC406_RS02595	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BAMMC406_RS02610	COG4536	flavin adenine dinucleotide binding
BAMMC406_RS02620	COG0142	geranyltranstransferase activity
BAMMC406_RS02660	COG2095	MarC family integral membrane protein
BAMMC406_RS02665	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
BAMMC406_RS02670	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BAMMC406_RS02710	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMMC406_RS02715	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
BAMMC406_RS02730	COG0439	Biotin carboxylase
BAMMC406_RS02735	COG0511	ligase activity, forming carbon-carbon bonds
BAMMC406_RS02740	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BAMMC406_RS02745	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMMC406_RS02755	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BAMMC406_RS02760	COG3150	esterase
BAMMC406_RS02765	COG0557	exoribonuclease II activity
BAMMC406_RS02770	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BAMMC406_RS02790	COG1414	Transcriptional regulator
BAMMC406_RS02795	COG3734	2-keto-3-deoxy-galactonokinase
BAMMC406_RS02800	COG0800	Aldolase
BAMMC406_RS02805	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS02815	COG1129	ABC transporter
BAMMC406_RS02835	COG0284	orotidine-5'-phosphate decarboxylase activity
BAMMC406_RS02845	COG1546	Belongs to the CinA family
BAMMC406_RS02850	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BAMMC406_RS02865	COG4290	ribonuclease
BAMMC406_RS02875	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BAMMC406_RS02885	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BAMMC406_RS02890	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BAMMC406_RS02895	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BAMMC406_RS02900	COG2801	Transposase and inactivated derivatives
BAMMC406_RS02915	COG1301	dicarboxylic acid transport
BAMMC406_RS02920	COG4266	Belongs to the allantoicase family
BAMMC406_RS02925	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
BAMMC406_RS02930	COG0735	belongs to the Fur family
BAMMC406_RS02935	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BAMMC406_RS02960	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
BAMMC406_RS02965	COG1466	dna polymerase III delta subunit
BAMMC406_RS02975	COG1981	membrane
BAMMC406_RS02990	COG0800	Aldolase
BAMMC406_RS03000	COG3265	gluconokinase activity
BAMMC406_RS03010	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMMC406_RS03020	COG0583	DNA-binding transcription factor activity
BAMMC406_RS03025	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BAMMC406_RS03035	COG0765	amino acid transport
BAMMC406_RS03040	COG0765	amino acid transport
BAMMC406_RS03045	COG1126	abc transporter atp-binding protein
BAMMC406_RS03060	COG0121	glutamine amidotransferase
BAMMC406_RS03065	COG0418	dihydroorotase activity
BAMMC406_RS03080	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BAMMC406_RS03110	COG0588	phosphoglycerate mutase activity
BAMMC406_RS03140	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BAMMC406_RS03145	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BAMMC406_RS03150	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BAMMC406_RS03155	COG0006	proline dipeptidase activity
BAMMC406_RS03160	COG0625	glutathione transferase activity
BAMMC406_RS03165	COG0069	glutamate synthase activity
BAMMC406_RS03215	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BAMMC406_RS03215	COG3008	intermembrane lipid transfer
BAMMC406_RS03220	COG2995	paraquat-inducible protein a
BAMMC406_RS03235	COG2353	YceI-like domain
BAMMC406_RS03240	COG2353	YceI-like domain
BAMMC406_RS03260	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BAMMC406_RS03265	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BAMMC406_RS03270	COG1862	Preprotein translocase
BAMMC406_RS03275	COG0343	queuine tRNA-ribosyltransferase activity
BAMMC406_RS03285	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BAMMC406_RS03300	COG0783	Belongs to the Dps family
BAMMC406_RS03320	COG0247	lactate metabolic process
BAMMC406_RS03325	COG0277	FAD linked oxidase domain protein
BAMMC406_RS03330	COG0277	FAD linked oxidase domain protein
BAMMC406_RS03335	COG0277	FAD linked oxidase domain protein
BAMMC406_RS03340	COG2096	Adenosyltransferase
BAMMC406_RS03345	COG1017	nitric oxide dioxygenase activity
BAMMC406_RS03345	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BAMMC406_RS03360	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BAMMC406_RS03365	COG0312	modulator of DNA gyrase
BAMMC406_RS03370	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BAMMC406_RS03380	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BAMMC406_RS03385	COG0497	DNA recombination
BAMMC406_RS03410	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BAMMC406_RS03430	COG0512	Glutamine amidotransferase of anthranilate synthase
BAMMC406_RS03430	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BAMMC406_RS03445	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BAMMC406_RS03455	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BAMMC406_RS03460	COG0617	tRNA 3'-terminal CCA addition
BAMMC406_RS03470	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BAMMC406_RS03500	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BAMMC406_RS03505	COG0586	Pfam SNARE associated Golgi protein
BAMMC406_RS03520	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BAMMC406_RS03530	COG4682	membrane
BAMMC406_RS03545	COG2885	chlorophyll binding
BAMMC406_RS03570	COG0824	Thioesterase
BAMMC406_RS03575	COG4221	oxidoreductase activity
BAMMC406_RS03630	COG0450	alkyl hydroperoxide reductase
BAMMC406_RS03635	COG1960	acyl-CoA dehydrogenase activity
BAMMC406_RS03650	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BAMMC406_RS03660	COG2814	Major facilitator Superfamily
BAMMC406_RS03680	COG0778	Nitroreductase
BAMMC406_RS03685	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BAMMC406_RS03690	COG0583	DNA-binding transcription factor activity
BAMMC406_RS03695	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BAMMC406_RS03700	COG4977	sequence-specific DNA binding
BAMMC406_RS03720	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BAMMC406_RS03750	COG2823	Periplasmic or secreted lipoprotein
BAMMC406_RS03760	COG0730	response to heat
BAMMC406_RS03765	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BAMMC406_RS03785	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMMC406_RS03820	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BAMMC406_RS03825	COG0459	protein refolding
BAMMC406_RS03835	COG1773	rubredoxin
BAMMC406_RS03855	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
BAMMC406_RS03865	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BAMMC406_RS03925	COG0438	transferase activity, transferring glycosyl groups
BAMMC406_RS03930	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
BAMMC406_RS03955	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BAMMC406_RS03975	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BAMMC406_RS04000	COG0859	PFAM glycosyl transferase family 9
BAMMC406_RS04025	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
BAMMC406_RS04045	COG0829	nickel cation binding
BAMMC406_RS04055	COG1129	ABC transporter
BAMMC406_RS04065	COG0559	Belongs to the binding-protein-dependent transport system permease family
BAMMC406_RS04080	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BAMMC406_RS04090	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BAMMC406_RS04105	COG1968	undecaprenyl-diphosphatase activity
BAMMC406_RS04110	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BAMMC406_RS04145	COG4948	Mandelate Racemase Muconate Lactonizing
BAMMC406_RS04155	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BAMMC406_RS04175	COG0762	integral membrane protein
BAMMC406_RS04195	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
BAMMC406_RS04205	COG0436	Aminotransferase
BAMMC406_RS04235	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BAMMC406_RS04235	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BAMMC406_RS04250	COG2814	Major facilitator Superfamily
BAMMC406_RS04270	COG0363	glucosamine-6-phosphate deaminase activity
BAMMC406_RS04275	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BAMMC406_RS04285	COG1175	transmembrane transport
BAMMC406_RS04290	COG0395	ABC-type sugar transport system, permease component
BAMMC406_RS04295	COG3842	ATPase activity
BAMMC406_RS04300	COG2860	membrane
BAMMC406_RS04305	COG1193	negative regulation of DNA recombination
BAMMC406_RS04310	COG0492	ferredoxin-NADP+ reductase activity
BAMMC406_RS04315	COG1674	ftsk spoiiie
BAMMC406_RS04320	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BAMMC406_RS04325	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BAMMC406_RS04360	COG2894	cell division
BAMMC406_RS04385	COG0859	PFAM glycosyl transferase family 9
BAMMC406_RS04395	COG0477	Major facilitator Superfamily
BAMMC406_RS04420	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BAMMC406_RS04425	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BAMMC406_RS04435	COG1561	YicC-like family, N-terminal region
BAMMC406_RS04450	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BAMMC406_RS04475	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BAMMC406_RS04485	COG1278	Cold shock
BAMMC406_RS04490	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BAMMC406_RS04490	COG1199	ATP-dependent helicase activity
BAMMC406_RS04510	COG4772	TonB-dependent receptor
BAMMC406_RS04535	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BAMMC406_RS04555	COG0308	aminopeptidase N
BAMMC406_RS04565	COG2119	membrane
BAMMC406_RS04570	COG0402	S-adenosylhomocysteine deaminase activity
BAMMC406_RS04580	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
BAMMC406_RS04590	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BAMMC406_RS04605	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BAMMC406_RS04640	COG3383	formate dehydrogenase (NAD+) activity
BAMMC406_RS04655	COG1910	domain protein
BAMMC406_RS04690	COG0546	phosphoglycolate phosphatase activity
BAMMC406_RS04725	COG0287	Prephenate dehydrogenase
BAMMC406_RS04745	COG0776	regulation of translation
BAMMC406_RS04755	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BAMMC406_RS04765	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
BAMMC406_RS04785	COG2951	lytic endotransglycosylase activity
BAMMC406_RS04790	COG0123	including yeast histone deacetylase and acetoin utilization protein
BAMMC406_RS04795	COG2267	carboxylic ester hydrolase activity
BAMMC406_RS04800	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BAMMC406_RS04805	COG2011	ABC-type metal ion transport system permease component
BAMMC406_RS04865	COG0335	large ribosomal subunit rRNA binding
BAMMC406_RS04870	COG0494	nUDIX hydrolase
BAMMC406_RS04890	COG0501	Belongs to the peptidase M48B family
BAMMC406_RS04895	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BAMMC406_RS04900	COG0521	Mo-molybdopterin cofactor biosynthetic process
BAMMC406_RS04910	COG0312	modulator of DNA gyrase
BAMMC406_RS04925	COG2204	response regulator
BAMMC406_RS04930	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BAMMC406_RS04955	COG0114	fumarate hydratase activity
BAMMC406_RS04985	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
BAMMC406_RS04995	COG3045	CreA protein
BAMMC406_RS05010	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BAMMC406_RS05050	COG0303	'Molybdopterin
BAMMC406_RS05060	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BAMMC406_RS05070	COG1530	ribonuclease E activity
BAMMC406_RS05080	COG0546	phosphoglycolate phosphatase activity
BAMMC406_RS05090	COG0616	signal peptide processing
BAMMC406_RS05105	COG1399	metal-binding, possibly nucleic acid-binding protein
BAMMC406_RS05140	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BAMMC406_RS05150	COG1595	DNA-templated transcription, initiation
BAMMC406_RS05165	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMMC406_RS05180	COG0681	Belongs to the peptidase S26 family
BAMMC406_RS05185	COG0571	ribonuclease III activity
BAMMC406_RS05190	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BAMMC406_RS05200	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BAMMC406_RS05260	COG2203	Gaf domain
BAMMC406_RS05260	COG3706	GGDEF domain
BAMMC406_RS05260	COG4251	negative regulation of phosphorylation
BAMMC406_RS05260	COG5001	Diguanylate cyclase
BAMMC406_RS05290	COG0024	Methionine aminopeptidase
BAMMC406_RS05295	COG1956	GAF domain-containing protein
BAMMC406_RS05310	COG2153	protein acetylation
BAMMC406_RS05325	COG1999	signal sequence binding
BAMMC406_RS05335	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
BAMMC406_RS05340	COG1132	(ABC) transporter
BAMMC406_RS05345	COG0438	transferase activity, transferring glycosyl groups
BAMMC406_RS05375	COG3511	phospholipase C
BAMMC406_RS05385	COG0596	Alpha beta hydrolase
BAMMC406_RS05390	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMMC406_RS05400	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BAMMC406_RS05405	COG3394	polysaccharide catabolic process
BAMMC406_RS05465	COG2988	succinylglutamate desuccinylase activity
BAMMC406_RS05515	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BAMMC406_RS05525	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMMC406_RS05530	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMMC406_RS05535	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BAMMC406_RS05565	COG0004	ammonium transporteR
BAMMC406_RS05585	COG1959	2 iron, 2 sulfur cluster binding
BAMMC406_RS05595	COG1522	sequence-specific DNA binding
BAMMC406_RS05600	COG3842	ATPase activity
BAMMC406_RS05605	COG1178	ABC-type Fe3 transport system permease component
BAMMC406_RS05610	COG1840	ABC-type Fe3 transport system, periplasmic component
BAMMC406_RS05620	COG1289	transmembrane transporter activity
BAMMC406_RS05625	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BAMMC406_RS05630	COG1074	ATP-dependent DNA helicase activity
BAMMC406_RS05635	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BAMMC406_RS05645	COG2200	EAL domain
BAMMC406_RS05675	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
BAMMC406_RS05680	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BAMMC406_RS05690	COG0697	spore germination
BAMMC406_RS05695	COG2814	Major facilitator Superfamily
BAMMC406_RS05700	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BAMMC406_RS05705	COG3842	ATPase activity
BAMMC406_RS05710	COG1177	transmembrane transport
BAMMC406_RS05720	COG1840	ABC-type Fe3 transport system, periplasmic component
BAMMC406_RS05725	COG1609	Transcriptional regulator
BAMMC406_RS05730	COG1596	polysaccharide export
BAMMC406_RS05800	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BAMMC406_RS05810	COG0022	dehydrogenase e1 component
BAMMC406_RS05825	COG0702	epimerase
BAMMC406_RS05835	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BAMMC406_RS05840	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BAMMC406_RS05845	COG0583	DNA-binding transcription factor activity
BAMMC406_RS05850	COG0477	Major facilitator Superfamily
BAMMC406_RS05865	COG2814	Major facilitator Superfamily
BAMMC406_RS05870	COG0583	DNA-binding transcription factor activity
BAMMC406_RS05875	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BAMMC406_RS05885	COG0583	DNA-binding transcription factor activity
BAMMC406_RS05890	COG1253	flavin adenine dinucleotide binding
BAMMC406_RS05910	COG1250	3-hydroxyacyl-CoA dehydrogenase
BAMMC406_RS05915	COG0583	DNA-binding transcription factor activity
BAMMC406_RS05935	COG3052	prosthetic group binding
BAMMC406_RS05955	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
BAMMC406_RS05990	COG0477	Major facilitator Superfamily
BAMMC406_RS06005	COG0328	RNA-DNA hybrid ribonuclease activity
BAMMC406_RS06010	COG2226	methyltransferase
BAMMC406_RS06015	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMMC406_RS06020	COG0741	lytic transglycosylase activity
BAMMC406_RS06020	COG1388	LysM domain
BAMMC406_RS06030	COG0505	Belongs to the CarA family
BAMMC406_RS06040	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BAMMC406_RS06045	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BAMMC406_RS06055	COG1534	Rna-binding protein
BAMMC406_RS06065	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BAMMC406_RS06080	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BAMMC406_RS06085	COG0573	inorganic phosphate transmembrane transporter activity
BAMMC406_RS06090	COG0581	inorganic phosphate transmembrane transporter activity
BAMMC406_RS06105	COG0745	RESPONSE REGULATOR receiver
BAMMC406_RS06155	COG0179	Fumarylacetoacetate (FAA) hydrolase
BAMMC406_RS06160	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS06165	COG2271	Major facilitator Superfamily
BAMMC406_RS06180	COG0583	DNA-binding transcription factor activity
BAMMC406_RS06190	COG3618	amidohydrolase
BAMMC406_RS06195	COG1129	ABC transporter
BAMMC406_RS06200	COG4211	Belongs to the binding-protein-dependent transport system permease family
BAMMC406_RS06250	COG0534	Mate efflux family protein
BAMMC406_RS06260	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BAMMC406_RS06265	COG4942	peptidase
BAMMC406_RS06275	COG1968	undecaprenyl-diphosphatase activity
BAMMC406_RS06295	COG0745	RESPONSE REGULATOR receiver
BAMMC406_RS06300	COG2815	serine threonine protein kinase
BAMMC406_RS06300	COG0515	serine threonine protein kinase
BAMMC406_RS06305	COG2205	protein histidine kinase activity
BAMMC406_RS06305	COG0784	Response regulator, receiver
BAMMC406_RS06360	COG3254	rhamnose metabolic process
BAMMC406_RS06370	COG2721	sulfolactate sulfo-lyase activity
BAMMC406_RS06380	COG1063	alcohol dehydrogenase
BAMMC406_RS06400	COG1172	Belongs to the binding-protein-dependent transport system permease family
BAMMC406_RS06405	COG1129	ABC transporter
BAMMC406_RS06410	COG2186	Transcriptional regulator
BAMMC406_RS06425	COG1960	acyl-CoA dehydrogenase activity
BAMMC406_RS06435	COG2205	protein histidine kinase activity
BAMMC406_RS06440	COG0745	RESPONSE REGULATOR receiver
BAMMC406_RS06465	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BAMMC406_RS06480	COG0583	DNA-binding transcription factor activity
BAMMC406_RS06485	COG2851	Citrate transporter
BAMMC406_RS06500	COG0840	transmembrane signaling receptor activity
BAMMC406_RS06510	COG4589	Belongs to the CDS family
BAMMC406_RS06520	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BAMMC406_RS06525	COG2267	carboxylic ester hydrolase activity
BAMMC406_RS06530	COG2453	phosphatase
BAMMC406_RS06530	COG0671	phosphoesterase, PA-phosphatase related
BAMMC406_RS06580	COG1215	transferase activity, transferring glycosyl groups
BAMMC406_RS06585	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BAMMC406_RS06610	COG1215	transferase activity, transferring glycosyl groups
BAMMC406_RS06615	COG2194	sulfuric ester hydrolase activity
BAMMC406_RS06625	COG1741	Belongs to the pirin family
BAMMC406_RS06635	COG0025	NhaP-type Na H and K H
BAMMC406_RS06650	COG0583	DNA-binding transcription factor activity
BAMMC406_RS06660	COG1574	metal-dependent hydrolase with the TIM-barrel fold
BAMMC406_RS06690	COG1858	cytochrome C peroxidase
BAMMC406_RS06700	COG0494	nUDIX hydrolase
BAMMC406_RS06705	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BAMMC406_RS06730	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BAMMC406_RS06770	COG0477	Major facilitator Superfamily
BAMMC406_RS06775	COG2816	NAD+ diphosphatase activity
BAMMC406_RS06780	COG0824	Thioesterase
BAMMC406_RS06795	COG0411	ABC transporter
BAMMC406_RS06805	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS06810	COG4702	Belongs to the UPF0303 family
BAMMC406_RS06815	COG3718	enzyme involved in inositol metabolism
BAMMC406_RS06825	COG3962	Belongs to the TPP enzyme family
BAMMC406_RS06840	COG1129	ABC transporter
BAMMC406_RS06845	COG1172	Belongs to the binding-protein-dependent transport system permease family
BAMMC406_RS06850	COG1082	Xylose isomerase domain protein TIM barrel
BAMMC406_RS06865	COG0673	inositol 2-dehydrogenase activity
BAMMC406_RS06870	COG1737	Transcriptional regulator
BAMMC406_RS06885	COG0425	Belongs to the sulfur carrier protein TusA family
BAMMC406_RS06895	COG0745	RESPONSE REGULATOR receiver
BAMMC406_RS06905	COG5002	protein histidine kinase activity
BAMMC406_RS06915	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BAMMC406_RS06920	COG0525	valine-tRNA ligase activity
BAMMC406_RS06940	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BAMMC406_RS06945	COG2223	nitrite transmembrane transporter activity
BAMMC406_RS06950	COG0840	transmembrane signaling receptor activity
BAMMC406_RS06975	COG0583	DNA-binding transcription factor activity
BAMMC406_RS06985	COG0277	FAD linked oxidase domain protein
BAMMC406_RS07000	COG1295	ribonuclease BN
BAMMC406_RS07015	COG0477	Major facilitator Superfamily
BAMMC406_RS07030	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMMC406_RS07035	COG2271	Major facilitator Superfamily
BAMMC406_RS07040	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BAMMC406_RS07050	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS07075	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS07090	COG0583	DNA-binding transcription factor activity
BAMMC406_RS07100	COG0251	oxidation-reduction process
BAMMC406_RS07105	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BAMMC406_RS07120	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BAMMC406_RS07135	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BAMMC406_RS07145	COG0776	regulation of translation
BAMMC406_RS07170	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
BAMMC406_RS07205	COG0583	DNA-binding transcription factor activity
BAMMC406_RS07210	COG0436	Aminotransferase
BAMMC406_RS07215	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BAMMC406_RS07230	COG0195	Participates in both transcription termination and antitermination
BAMMC406_RS07230	COG2251	uridine kinase activity
BAMMC406_RS07250	COG2814	Major facilitator Superfamily
BAMMC406_RS07255	COG1566	PFAM secretion protein HlyD family protein
BAMMC406_RS07265	COG1846	Transcriptional regulator
BAMMC406_RS07270	COG1217	gtp-binding protein TYPA
BAMMC406_RS07275	COG0567	Dehydrogenase, E1 component
BAMMC406_RS07280	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMMC406_RS07285	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BAMMC406_RS07290	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BAMMC406_RS07340	COG4964	Belongs to the GSP D family
BAMMC406_RS07405	COG0318	PFAM AMP-dependent synthetase and ligase
BAMMC406_RS07415	COG2814	Major facilitator Superfamily
BAMMC406_RS07440	COG1879	ABC-type sugar transport system periplasmic component
BAMMC406_RS07445	COG1172	Belongs to the binding-protein-dependent transport system permease family
BAMMC406_RS07450	COG1129	ABC transporter
BAMMC406_RS07480	COG0557	exoribonuclease II activity
BAMMC406_RS07485	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BAMMC406_RS07490	COG3023	N-Acetylmuramoyl-L-alanine amidase
BAMMC406_RS07500	COG1802	Transcriptional regulator
BAMMC406_RS07505	COG0673	inositol 2-dehydrogenase activity
BAMMC406_RS07510	COG0765	amino acid transport
BAMMC406_RS07515	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMMC406_RS07520	COG0167	dihydroorotate dehydrogenase activity
BAMMC406_RS07570	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BAMMC406_RS07575	COG1116	anion transmembrane transporter activity
BAMMC406_RS07595	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BAMMC406_RS07610	COG0456	acetyltransferase
BAMMC406_RS07675	COG0667	Aldo Keto reductase
BAMMC406_RS07690	COG0583	DNA-binding transcription factor activity
BAMMC406_RS07695	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
BAMMC406_RS07700	COG0701	Predicted permease
BAMMC406_RS07740	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BAMMC406_RS07745	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BAMMC406_RS07750	COG4208	sulfate ABC transporter
BAMMC406_RS07755	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BAMMC406_RS07760	COG0583	DNA-binding transcription factor activity
BAMMC406_RS07765	COG1879	ABC-type sugar transport system periplasmic component
BAMMC406_RS07770	COG1129	ABC transporter
BAMMC406_RS07775	COG1172	Belongs to the binding-protein-dependent transport system permease family
BAMMC406_RS07780	COG1609	Transcriptional regulator
BAMMC406_RS07785	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMMC406_RS07795	COG2766	serine protein kinase
BAMMC406_RS07800	COG2718	Belongs to the UPF0229 family
BAMMC406_RS07805	COG2719	SpoVR family
BAMMC406_RS07810	COG0477	Major facilitator Superfamily
BAMMC406_RS07820	COG3121	Chaperone
BAMMC406_RS07825	COG3188	usher protein
BAMMC406_RS07830	COG3121	Chaperone
BAMMC406_RS07845	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMMC406_RS07850	COG0765	amino acid transport
BAMMC406_RS07855	COG0765	amino acid transport
BAMMC406_RS07860	COG0739	heme binding
BAMMC406_RS07865	COG1309	transcriptional regulator
BAMMC406_RS07870	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BAMMC406_RS07875	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMMC406_RS07890	COG3188	usher protein
BAMMC406_RS07895	COG3121	Chaperone
BAMMC406_RS07920	COG1120	ATPase activity
BAMMC406_RS07960	COG3486	L-lysine 6-monooxygenase (NADPH) activity
BAMMC406_RS07965	COG4774	siderophore transport
BAMMC406_RS07970	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BAMMC406_RS08000	COG1473	amidohydrolase
BAMMC406_RS08025	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
BAMMC406_RS08065	COG0494	nUDIX hydrolase
BAMMC406_RS08075	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BAMMC406_RS08080	COG2851	Citrate transporter
BAMMC406_RS08095	COG3979	chitinase
BAMMC406_RS08140	COG2807	transmembrane transport
BAMMC406_RS08155	COG0625	glutathione transferase activity
BAMMC406_RS08165	COG2909	trisaccharide binding
BAMMC406_RS08180	COG2175	clavaminate synthase activity
BAMMC406_RS08185	COG3246	L-lysine catabolic process to acetate
BAMMC406_RS08205	COG3842	ATPase activity
BAMMC406_RS08210	COG1176	ABC-type spermidine putrescine transport system, permease component I
BAMMC406_RS08215	COG0395	ABC-type sugar transport system, permease component
BAMMC406_RS08235	COG2205	protein histidine kinase activity
BAMMC406_RS08235	COG0784	Response regulator, receiver
BAMMC406_RS08235	COG5002	protein histidine kinase activity
BAMMC406_RS08250	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BAMMC406_RS08255	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BAMMC406_RS08260	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BAMMC406_RS08280	COG2271	Major facilitator Superfamily
BAMMC406_RS08290	COG2070	2-Nitropropane dioxygenase
BAMMC406_RS08300	COG1846	Transcriptional regulator
BAMMC406_RS08320	COG1764	response to oxidative stress
BAMMC406_RS08330	COG0583	DNA-binding transcription factor activity
BAMMC406_RS08350	COG0598	Magnesium transport protein CorA
BAMMC406_RS08395	COG1609	Transcriptional regulator
BAMMC406_RS08410	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMMC406_RS08425	COG2855	membrane
BAMMC406_RS08430	COG0038	chloride channel
BAMMC406_RS08445	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMMC406_RS08480	COG0730	response to heat
BAMMC406_RS08480	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMMC406_RS08485	COG1177	transmembrane transport
BAMMC406_RS08490	COG1176	ABC-type spermidine putrescine transport system, permease component I
BAMMC406_RS08495	COG3842	ATPase activity
BAMMC406_RS08500	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BAMMC406_RS08510	COG3047	cAMP biosynthetic process
BAMMC406_RS08515	COG2070	2-Nitropropane dioxygenase
BAMMC406_RS08530	COG1522	sequence-specific DNA binding
BAMMC406_RS08540	COG0488	(ABC) transporter
BAMMC406_RS08550	COG2982	Protein involved in outer membrane biogenesis
BAMMC406_RS08555	COG1122	ATPase activity
BAMMC406_RS08560	COG0390	transport system, permease component
BAMMC406_RS08580	COG0583	DNA-binding transcription factor activity
BAMMC406_RS08585	COG0560	Phosphoserine phosphatase
BAMMC406_RS08590	COG0626	cystathionine gamma-synthase activity
BAMMC406_RS08625	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS08630	COG0183	Belongs to the thiolase family
BAMMC406_RS08635	COG3243	poly(R)-hydroxyalkanoic acid synthase
BAMMC406_RS08645	COG0564	pseudouridine synthase activity
BAMMC406_RS08655	COG1199	ATP-dependent helicase activity
BAMMC406_RS08670	COG2183	response to ionizing radiation
BAMMC406_RS08680	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
BAMMC406_RS08700	COG0330	HflC and HflK could
BAMMC406_RS08705	COG0330	HflC and HflK could
BAMMC406_RS08710	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BAMMC406_RS08725	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BAMMC406_RS08760	COG0670	Belongs to the BI1 family
BAMMC406_RS08765	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BAMMC406_RS08795	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BAMMC406_RS08800	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BAMMC406_RS08810	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BAMMC406_RS08815	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BAMMC406_RS08825	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BAMMC406_RS08830	COG0789	Transcriptional regulator
BAMMC406_RS08835	COG0477	Major facilitator Superfamily
BAMMC406_RS08840	COG3228	Belongs to the MtfA family
BAMMC406_RS08855	COG0534	Mate efflux family protein
BAMMC406_RS08860	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BAMMC406_RS08870	COG0022	dehydrogenase e1 component
BAMMC406_RS08875	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BAMMC406_RS08880	COG3199	ATP-NAD kinase
BAMMC406_RS08885	COG3284	Transcriptional regulator
BAMMC406_RS08910	COG0542	response to heat
BAMMC406_RS08915	COG1959	2 iron, 2 sulfur cluster binding
BAMMC406_RS08920	COG2346	COG2346, Truncated hemoglobins
BAMMC406_RS08925	COG0314	molybdopterin synthase activity
BAMMC406_RS08930	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BAMMC406_RS08950	COG0436	Aminotransferase
BAMMC406_RS08960	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
BAMMC406_RS08965	COG2076	Multidrug Resistance protein
BAMMC406_RS08970	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BAMMC406_RS08985	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMMC406_RS08985	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BAMMC406_RS08990	COG0726	polysaccharide deacetylase
BAMMC406_RS08995	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BAMMC406_RS09000	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BAMMC406_RS09005	COG0791	NLP P60 protein
BAMMC406_RS09010	COG0306	phosphate transporter
BAMMC406_RS09020	COG0305	Participates in initiation and elongation during chromosome replication
BAMMC406_RS09035	COG2965	DNA replication, synthesis of RNA primer
BAMMC406_RS09040	COG0360	Binds together with S18 to 16S ribosomal RNA
BAMMC406_RS09055	COG0583	DNA-binding transcription factor activity
BAMMC406_RS09060	COG3960	tartronate-semialdehyde synthase activity
BAMMC406_RS09065	COG3622	Belongs to the hyi family
BAMMC406_RS09070	COG2084	Dehydrogenase
BAMMC406_RS09075	COG1652	LysM domain
BAMMC406_RS09080	COG0252	asparaginase activity
BAMMC406_RS09100	COG0438	transferase activity, transferring glycosyl groups
BAMMC406_RS09125	COG0084	hydrolase, TatD family'
BAMMC406_RS09140	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BAMMC406_RS09155	COG2153	protein acetylation
BAMMC406_RS09165	COG2130	NADP-dependent
BAMMC406_RS09185	COG3328	transposase activity
BAMMC406_RS09190	COG0582	viral genome integration into host DNA
BAMMC406_RS09195	COG2085	NADP oxidoreductase coenzyme F420-dependent
BAMMC406_RS09200	COG1733	regulation of RNA biosynthetic process
BAMMC406_RS09230	COG0183	Belongs to the thiolase family
BAMMC406_RS09235	COG1335	isochorismatase
BAMMC406_RS09245	COG0318	PFAM AMP-dependent synthetase and ligase
BAMMC406_RS09270	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BAMMC406_RS09280	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BAMMC406_RS09280	COG0047	phosphoribosylformylglycinamidine synthase activity
BAMMC406_RS09285	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMMC406_RS09300	COG4181	ATPase activity
BAMMC406_RS09325	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BAMMC406_RS09345	COG1929	Belongs to the glycerate kinase type-1 family
BAMMC406_RS09355	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BAMMC406_RS09415	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BAMMC406_RS09425	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BAMMC406_RS09430	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BAMMC406_RS09435	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMMC406_RS09475	COG3360	Dodecin
BAMMC406_RS09495	COG2351	hydroxyisourate hydrolase activity
BAMMC406_RS09515	COG4266	Belongs to the allantoicase family
BAMMC406_RS09520	COG3648	Uricase
BAMMC406_RS09520	COG3195	allantoin biosynthetic process
BAMMC406_RS09535	COG1953	Uracil, thiamine, allantoin
BAMMC406_RS09545	COG1619	proteins homologs of microcin C7 resistance protein MccF
BAMMC406_RS09550	COG0590	tRNA wobble adenosine to inosine editing
BAMMC406_RS09560	COG2814	Major facilitator Superfamily
BAMMC406_RS09565	COG2188	Transcriptional regulator
BAMMC406_RS09570	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BAMMC406_RS09625	COG0697	spore germination
BAMMC406_RS09640	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BAMMC406_RS09645	COG0330	HflC and HflK could
BAMMC406_RS09665	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BAMMC406_RS09695	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
BAMMC406_RS09705	COG0750	zinc metalloprotease
BAMMC406_RS09720	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BAMMC406_RS09730	COG0528	UMP kinase activity
BAMMC406_RS09745	COG0024	Methionine aminopeptidase
BAMMC406_RS09755	COG1187	pseudouridine synthase activity
BAMMC406_RS09760	COG0242	peptide deformylase activity
BAMMC406_RS09795	COG1393	Belongs to the ArsC family
BAMMC406_RS09805	COG2890	protein-(glutamine-N5) methyltransferase activity
BAMMC406_RS09815	COG0386	Belongs to the glutathione peroxidase family
BAMMC406_RS09820	COG0488	(ABC) transporter
BAMMC406_RS09840	COG0477	Major facilitator Superfamily
BAMMC406_RS09845	COG0351	phosphomethylpyrimidine kinase
BAMMC406_RS09855	COG1573	uracil-dna glycosylase
BAMMC406_RS09865	COG1214	PFAM Peptidase M22, glycoprotease
BAMMC406_RS09875	COG0513	Belongs to the DEAD box helicase family
BAMMC406_RS09880	COG2224	Isocitrate lyase
BAMMC406_RS09890	COG0583	DNA-binding transcription factor activity
BAMMC406_RS09900	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BAMMC406_RS09960	COG1752	Esterase of the alpha-beta hydrolase superfamily
BAMMC406_RS09965	COG0791	NLP P60 protein
BAMMC406_RS09970	COG4172	Belongs to the ABC transporter superfamily
BAMMC406_RS09975	COG4239	(ABC) transporter, permease
BAMMC406_RS09980	COG4174	ABC transporter (Permease)
BAMMC406_RS10000	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BAMMC406_RS10020	COG0642	Histidine kinase
BAMMC406_RS10025	COG0745	RESPONSE REGULATOR receiver
BAMMC406_RS10035	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BAMMC406_RS10065	COG0527	aspartate kinase activity
BAMMC406_RS10070	COG0037	tRNA processing
BAMMC406_RS10095	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BAMMC406_RS10105	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BAMMC406_RS10110	COG1045	serine acetyltransferase
BAMMC406_RS10120	COG0483	inositol monophosphate 1-phosphatase activity
BAMMC406_RS10125	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
BAMMC406_RS10130	COG1309	transcriptional regulator
BAMMC406_RS10140	COG2226	methyltransferase
BAMMC406_RS10150	COG2205	protein histidine kinase activity
BAMMC406_RS10170	COG2850	peptidyl-arginine hydroxylation
BAMMC406_RS10175	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BAMMC406_RS10180	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
BAMMC406_RS10185	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BAMMC406_RS10195	COG0180	Tryptophanyl-tRNA synthetase
BAMMC406_RS10200	COG1994	Peptidase M50
BAMMC406_RS10205	COG0009	L-threonylcarbamoyladenylate synthase
BAMMC406_RS10210	COG0613	PHP domain protein
BAMMC406_RS10215	COG0596	Alpha beta hydrolase
BAMMC406_RS10220	COG2833	Protein of unknown function (DUF455)
BAMMC406_RS10230	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BAMMC406_RS10240	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BAMMC406_RS10265	COG2333	competence protein COMEC
BAMMC406_RS10265	COG0658	competence protein
BAMMC406_RS10270	COG0084	hydrolase, TatD family'
BAMMC406_RS10290	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BAMMC406_RS10295	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BAMMC406_RS10300	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BAMMC406_RS10330	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BAMMC406_RS10335	COG0316	Belongs to the HesB IscA family
BAMMC406_RS10340	COG0822	iron-sulfur transferase activity
BAMMC406_RS10345	COG1104	cysteine desulfurase activity
BAMMC406_RS10355	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BAMMC406_RS10375	COG1414	Transcriptional regulator
BAMMC406_RS10380	COG1686	Belongs to the peptidase S11 family
BAMMC406_RS10390	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BAMMC406_RS10395	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMMC406_RS10400	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
BAMMC406_RS10410	COG4566	intracellular signal transduction
BAMMC406_RS10420	COG0339	signal peptide processing
BAMMC406_RS10425	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BAMMC406_RS10430	COG1794	racemase activity, acting on amino acids and derivatives
BAMMC406_RS10450	COG1505	serine-type exopeptidase activity
BAMMC406_RS10465	COG0174	glutamine synthetase
BAMMC406_RS10475	COG1058	Belongs to the CinA family
BAMMC406_RS10475	COG1546	Belongs to the CinA family
BAMMC406_RS10495	COG1643	Atp-dependent helicase
BAMMC406_RS10500	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BAMMC406_RS10500	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BAMMC406_RS10510	COG0477	Major facilitator Superfamily
BAMMC406_RS10515	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BAMMC406_RS10520	COG1960	acyl-CoA dehydrogenase activity
BAMMC406_RS10525	COG0583	DNA-binding transcription factor activity
BAMMC406_RS10530	COG1113	amino acid transport
BAMMC406_RS10535	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BAMMC406_RS10545	COG1448	Aminotransferase
BAMMC406_RS10550	COG1522	sequence-specific DNA binding
BAMMC406_RS10565	COG0174	glutamine synthetase
BAMMC406_RS10570	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BAMMC406_RS10595	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BAMMC406_RS10610	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMMC406_RS10625	COG0583	DNA-binding transcription factor activity
BAMMC406_RS10645	COG0415	Belongs to the DNA photolyase family
BAMMC406_RS10655	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS10705	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMMC406_RS10740	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
BAMMC406_RS10770	COG1741	Belongs to the pirin family
BAMMC406_RS10790	COG0672	)-iron permease
BAMMC406_RS10795	COG4633	Protein conserved in bacteria
BAMMC406_RS10805	COG0556	nucleotide-excision repair
BAMMC406_RS10815	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS10820	COG0667	Aldo Keto reductase
BAMMC406_RS10825	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BAMMC406_RS10885	COG2866	Carboxypeptidase
BAMMC406_RS10900	COG0436	Aminotransferase
BAMMC406_RS10910	COG1024	Enoyl-CoA hydratase
BAMMC406_RS10915	COG0625	glutathione transferase activity
BAMMC406_RS10930	COG1960	acyl-CoA dehydrogenase activity
BAMMC406_RS10935	COG1960	acyl-CoA dehydrogenase activity
BAMMC406_RS10955	COG1007	ATP synthesis coupled electron transport
BAMMC406_RS10980	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BAMMC406_RS10990	COG1034	ATP synthesis coupled electron transport
BAMMC406_RS10990	COG1034	ATP synthesis coupled electron transport
BAMMC406_RS11000	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BAMMC406_RS11035	COG0149	triose-phosphate isomerase activity
BAMMC406_RS11040	COG4221	oxidoreductase activity
BAMMC406_RS11040	COG0604	alcohol dehydrogenase
BAMMC406_RS11040	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMMC406_RS11040	COG3321	synthase
BAMMC406_RS11055	COG0683	leucine binding
BAMMC406_RS11065	COG0288	reversible hydration of carbon dioxide
BAMMC406_RS11070	COG0659	secondary active sulfate transmembrane transporter activity
BAMMC406_RS11080	COG1183	phosphatidylcholine synthase activity
BAMMC406_RS11100	COG0028	Belongs to the TPP enzyme family
BAMMC406_RS11130	COG0438	transferase activity, transferring glycosyl groups
BAMMC406_RS11150	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS11155	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
BAMMC406_RS11165	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BAMMC406_RS11175	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
BAMMC406_RS11185	COG2076	Multidrug Resistance protein
BAMMC406_RS11195	COG0745	RESPONSE REGULATOR receiver
BAMMC406_RS11200	COG2205	protein histidine kinase activity
BAMMC406_RS11210	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BAMMC406_RS11215	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BAMMC406_RS11240	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS11255	COG0151	Belongs to the GarS family
BAMMC406_RS11270	COG0799	negative regulation of ribosome biogenesis
BAMMC406_RS11285	COG1530	ribonuclease E activity
BAMMC406_RS11290	COG3171	Protein conserved in bacteria
BAMMC406_RS11330	COG1216	Glycosyl transferase, family 2
BAMMC406_RS11340	COG0859	PFAM glycosyl transferase family 9
BAMMC406_RS11360	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BAMMC406_RS11365	COG0513	Belongs to the DEAD box helicase family
BAMMC406_RS11370	COG3895	Periplasmic Protein
BAMMC406_RS11380	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BAMMC406_RS11390	COG1674	ftsk spoiiie
BAMMC406_RS11395	COG2706	6-phosphogluconolactonase activity
BAMMC406_RS11400	COG3387	PFAM Glycoside hydrolase 15-related
BAMMC406_RS11410	COG1309	transcriptional regulator
BAMMC406_RS11415	COG2878	Part of a membrane complex involved in electron transport
BAMMC406_RS11420	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BAMMC406_RS11445	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BAMMC406_RS11455	COG3135	benzoate transporter
BAMMC406_RS11480	COG4106	trans-aconitate 2-methyltransferase activity
BAMMC406_RS11500	COG3161	chorismate lyase activity
BAMMC406_RS11505	COG0326	Molecular chaperone. Has ATPase activity
BAMMC406_RS11525	COG0697	spore germination
BAMMC406_RS11530	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMMC406_RS11540	COG0384	phenazine biosynthesis protein PhzF
BAMMC406_RS11545	COG5001	Diguanylate cyclase
BAMMC406_RS11560	COG0583	DNA-binding transcription factor activity
BAMMC406_RS11580	COG0488	(ABC) transporter
BAMMC406_RS11615	COG0463	Glycosyl transferase, family 2
BAMMC406_RS11625	COG3958	Transketolase
BAMMC406_RS11630	COG3959	Transketolase, thiamine diphosphate binding domain
BAMMC406_RS11660	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS11665	COG1309	transcriptional regulator
BAMMC406_RS11690	COG2814	Major facilitator Superfamily
BAMMC406_RS11700	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
BAMMC406_RS11720	COG1116	anion transmembrane transporter activity
BAMMC406_RS11725	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BAMMC406_RS11750	COG1741	Belongs to the pirin family
BAMMC406_RS11770	COG4598	ABC transporter
BAMMC406_RS11805	COG1472	Belongs to the glycosyl hydrolase 3 family
BAMMC406_RS11815	COG2827	Endonuclease containing a URI domain
BAMMC406_RS11820	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BAMMC406_RS11835	COG2271	Major facilitator Superfamily
BAMMC406_RS11850	COG0181	hydroxymethylbilane synthase activity
BAMMC406_RS11855	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BAMMC406_RS11860	COG2226	methyltransferase
BAMMC406_RS11890	COG0165	Argininosuccinate lyase
BAMMC406_RS11895	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BAMMC406_RS11920	COG0489	protein tyrosine kinase activity
BAMMC406_RS11925	COG3047	cAMP biosynthetic process
BAMMC406_RS11925	COG2885	chlorophyll binding
BAMMC406_RS11940	COG2801	Transposase and inactivated derivatives
BAMMC406_RS11945	COG2911	Protein conserved in bacteria
BAMMC406_RS11960	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BAMMC406_RS11980	COG2259	Doxx family
BAMMC406_RS11985	COG1492	cobalamin metabolic process
BAMMC406_RS11995	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BAMMC406_RS12005	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMMC406_RS12015	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
BAMMC406_RS12020	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BAMMC406_RS12025	COG1120	ATPase activity
BAMMC406_RS12030	COG4139	cobalamin transport
BAMMC406_RS12060	COG0583	DNA-binding transcription factor activity
BAMMC406_RS12105	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BAMMC406_RS12105	COG1648	precorrin-2 dehydrogenase activity
BAMMC406_RS12110	COG2895	sulfate adenylyltransferase (ATP) activity
BAMMC406_RS12120	COG0175	sulfate reduction
BAMMC406_RS12135	COG0583	DNA-binding transcription factor activity
BAMMC406_RS12165	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS12180	COG0583	DNA-binding transcription factor activity
BAMMC406_RS12185	COG4221	oxidoreductase activity
BAMMC406_RS12190	COG1187	pseudouridine synthase activity
BAMMC406_RS12205	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BAMMC406_RS12205	COG0543	2 iron, 2 sulfur cluster binding
BAMMC406_RS12210	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BAMMC406_RS12215	COG0456	acetyltransferase
BAMMC406_RS12250	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BAMMC406_RS12255	COG1047	Peptidyl-prolyl cis-trans
BAMMC406_RS12275	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BAMMC406_RS12295	COG3264	Mechanosensitive ion channel
BAMMC406_RS12295	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
BAMMC406_RS12300	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BAMMC406_RS12300	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BAMMC406_RS12305	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BAMMC406_RS12310	COG0196	riboflavin kinase activity
BAMMC406_RS12325	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BAMMC406_RS12340	COG1113	amino acid transport
BAMMC406_RS12345	COG0542	response to heat
BAMMC406_RS12355	COG1278	Cold shock
BAMMC406_RS12360	COG5295	Hep Hag repeat protein
BAMMC406_RS12365	COG2132	Multicopper oxidase
BAMMC406_RS12400	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
BAMMC406_RS12410	COG0656	L-ascorbic acid biosynthetic process
BAMMC406_RS12415	COG2188	Transcriptional regulator
BAMMC406_RS12420	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BAMMC406_RS12435	COG2814	Major facilitator Superfamily
BAMMC406_RS12450	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BAMMC406_RS12470	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BAMMC406_RS12475	COG1570	exodeoxyribonuclease VII activity
BAMMC406_RS12485	COG2835	tetraacyldisaccharide 4'-kinase activity
BAMMC406_RS12510	COG0728	peptidoglycan biosynthetic process
BAMMC406_RS12545	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BAMMC406_RS12550	COG0318	PFAM AMP-dependent synthetase and ligase
BAMMC406_RS12555	COG4974	Belongs to the 'phage' integrase family
BAMMC406_RS12565	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BAMMC406_RS12570	COG0802	atpase or kinase
BAMMC406_RS12575	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMMC406_RS12585	COG1741	Belongs to the pirin family
BAMMC406_RS12595	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BAMMC406_RS12605	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BAMMC406_RS12620	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BAMMC406_RS12635	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BAMMC406_RS12640	COG1522	sequence-specific DNA binding
BAMMC406_RS12665	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BAMMC406_RS12670	COG1012	belongs to the aldehyde dehydrogenase family
BAMMC406_RS12685	COG0246	Mannitol dehydrogenase
BAMMC406_RS12690	COG1070	Carbohydrate kinase
BAMMC406_RS12700	COG3842	ATPase activity
BAMMC406_RS12705	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BAMMC406_RS12715	COG4209	transmembrane transport
BAMMC406_RS12725	COG4573	that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of
BAMMC406_RS12730	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMMC406_RS12740	COG0735	belongs to the Fur family
BAMMC406_RS12750	COG1121	(ABC) transporter
BAMMC406_RS12755	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BAMMC406_RS12775	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
BAMMC406_RS12785	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
BAMMC406_RS12790	COG1070	Carbohydrate kinase
BAMMC406_RS12795	COG2233	PERMEase
BAMMC406_RS12805	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMMC406_RS12810	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BAMMC406_RS12825	COG4977	sequence-specific DNA binding
BAMMC406_RS12845	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMMC406_RS12860	COG2027	D-alanyl-D-alanine carboxypeptidase
BAMMC406_RS12875	COG0009	L-threonylcarbamoyladenylate synthase
BAMMC406_RS12880	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BAMMC406_RS12885	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BAMMC406_RS12890	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BAMMC406_RS12900	COG0469	pyruvate kinase activity
BAMMC406_RS12905	COG0126	phosphoglycerate kinase activity
BAMMC406_RS12940	COG0429	hydrolase of the alpha beta-hydrolase fold
BAMMC406_RS12950	COG4783	chaperone-mediated protein folding
BAMMC406_RS12995	COG4969	Belongs to the N-Me-Phe pilin family
BAMMC406_RS13000	COG0861	Integral membrane protein TerC family
BAMMC406_RS13005	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BAMMC406_RS13020	COG2137	regulation of response to DNA damage stimulus
BAMMC406_RS13025	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BAMMC406_RS13050	COG0583	DNA-binding transcription factor activity
BAMMC406_RS13055	COG4977	sequence-specific DNA binding
BAMMC406_RS13075	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BAMMC406_RS13080	COG0154	amidase activity
BAMMC406_RS13095	COG0583	DNA-binding transcription factor activity
BAMMC406_RS13110	COG3813	Protein conserved in bacteria
BAMMC406_RS13115	COG2186	Transcriptional regulator
BAMMC406_RS13120	COG4948	Mandelate Racemase Muconate Lactonizing
BAMMC406_RS13130	COG2863	cytochrome
BAMMC406_RS13140	COG0513	Belongs to the DEAD box helicase family
BAMMC406_RS13185	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BAMMC406_RS13190	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BAMMC406_RS13195	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BAMMC406_RS13200	COG1396	sequence-specific DNA binding
BAMMC406_RS13205	COG2814	Major facilitator Superfamily
BAMMC406_RS13210	COG0583	DNA-binding transcription factor activity
BAMMC406_RS13220	COG1702	phosphate starvation-inducible protein PhoH
BAMMC406_RS13230	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
BAMMC406_RS13245	COG0815	Transfers the fatty acyl group on membrane lipoproteins
BAMMC406_RS13255	COG0752	glycyl-tRNA synthetase alpha subunit
BAMMC406_RS13260	COG0751	glycine-tRNA ligase activity
BAMMC406_RS13265	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BAMMC406_RS13270	COG0204	Acyl-transferase
BAMMC406_RS13295	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BAMMC406_RS13305	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BAMMC406_RS13310	COG3178	'Phosphotransferase
BAMMC406_RS13320	COG5265	(ABC) transporter
BAMMC406_RS13335	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BAMMC406_RS13340	COG1024	Enoyl-CoA hydratase
BAMMC406_RS13345	COG0183	Belongs to the thiolase family
BAMMC406_RS13350	COG1024	Enoyl-CoA hydratase
BAMMC406_RS13350	COG1250	3-hydroxyacyl-CoA dehydrogenase
BAMMC406_RS13355	COG1960	acyl-CoA dehydrogenase activity
BAMMC406_RS13370	COG0494	nUDIX hydrolase
BAMMC406_RS13430	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BAMMC406_RS13440	COG0251	oxidation-reduction process
BAMMC406_RS13445	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
BAMMC406_RS13470	COG0477	Major facilitator Superfamily
BAMMC406_RS13495	COG0235	Class ii aldolase
BAMMC406_RS13500	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMMC406_RS13505	COG2186	Transcriptional regulator
BAMMC406_RS13510	COG0247	lactate metabolic process
BAMMC406_RS13520	COG1139	Iron-sulfur cluster binding protein
BAMMC406_RS13525	COG1620	l-lactate permease
BAMMC406_RS13530	COG0501	Belongs to the peptidase M48B family
BAMMC406_RS13545	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS13585	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BAMMC406_RS13610	COG1028	Short-chain dehydrogenase reductase Sdr
BAMMC406_RS13615	COG0183	Belongs to the thiolase family
BAMMC406_RS13635	COG0629	single-stranded DNA binding
BAMMC406_RS13640	COG2814	Major facilitator Superfamily
BAMMC406_RS13665	COG1280	lysine exporter protein (LysE YggA)
BAMMC406_RS13685	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BAMMC406_RS13700	COG1137	ATPase activity
BAMMC406_RS13705	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
BAMMC406_RS13710	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BAMMC406_RS13720	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BAMMC406_RS13735	COG1194	a g-specific adenine glycosylase
BAMMC406_RS13750	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BAMMC406_RS13765	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BAMMC406_RS13785	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BAMMC406_RS13790	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BAMMC406_RS13795	COG0742	ribosomal rna small subunit methyltransferase
BAMMC406_RS13805	COG0625	glutathione transferase activity
BAMMC406_RS13810	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BAMMC406_RS13815	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BAMMC406_RS13830	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BAMMC406_RS13845	COG1294	oxidase, subunit
BAMMC406_RS13860	COG1263	PTS System
BAMMC406_RS13860	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMMC406_RS13860	COG2190	(PTS) system
BAMMC406_RS13865	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BAMMC406_RS13865	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMMC406_RS13870	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BAMMC406_RS13875	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BAMMC406_RS13880	COG2188	Transcriptional regulator
BAMMC406_RS13885	COG0587	DNA-directed DNA polymerase activity
BAMMC406_RS13915	COG1464	Belongs to the NlpA lipoprotein family
BAMMC406_RS13920	COG0840	transmembrane signaling receptor activity
BAMMC406_RS13930	COG1999	signal sequence binding
BAMMC406_RS13980	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BAMMC406_RS13995	COG2226	methyltransferase
BAMMC406_RS14005	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BAMMC406_RS14010	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BAMMC406_RS14030	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BAMMC406_RS14040	COG0793	Belongs to the peptidase S41A family
BAMMC406_RS14045	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BAMMC406_RS14050	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BAMMC406_RS14055	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMMC406_RS14065	COG0189	ligase activity
BAMMC406_RS14075	COG0004	ammonium transporteR
BAMMC406_RS14085	COG2960	long-chain fatty acid transporting porin activity
BAMMC406_RS14110	COG4191	Histidine kinase
BAMMC406_RS14120	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMMC406_RS14130	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BAMMC406_RS14135	COG1960	acyl-CoA dehydrogenase activity
BAMMC406_RS14140	COG1960	acyl-CoA dehydrogenase activity
BAMMC406_RS14150	COG0583	DNA-binding transcription factor activity
BAMMC406_RS14155	COG0405	Gamma-glutamyltransferase
BAMMC406_RS14175	COG0583	DNA-binding transcription factor activity
BAMMC406_RS14180	COG2921	Belongs to the UPF0250 family
BAMMC406_RS14190	COG1686	Belongs to the peptidase S11 family
BAMMC406_RS14220	COG1127	ABC transporter
BAMMC406_RS14225	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BAMMC406_RS14230	COG0737	Belongs to the 5'-nucleotidase family
BAMMC406_RS14245	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
BAMMC406_RS14245	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
BAMMC406_RS14260	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
BAMMC406_RS14280	COG1024	Enoyl-CoA hydratase
BAMMC406_RS14330	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BAMMC406_RS14335	COG0300	oxidoreductase activity
BAMMC406_RS14340	COG0747	negative chemotaxis
BAMMC406_RS14345	COG0488	(ABC) transporter
BAMMC406_RS14360	COG0288	reversible hydration of carbon dioxide
BAMMC406_RS14365	COG0300	oxidoreductase activity
BAMMC406_RS14370	COG3012	SEC-C Motif Domain Protein
BAMMC406_RS14405	COG2200	EAL domain
BAMMC406_RS14405	COG2199	diguanylate cyclase activity
BAMMC406_RS14410	COG0025	NhaP-type Na H and K H
BAMMC406_RS14425	COG0110	maltose O-acetyltransferase activity
BAMMC406_RS14430	COG0625	glutathione transferase activity
BAMMC406_RS14445	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BAMMC406_RS14460	COG0583	DNA-binding transcription factor activity
BAMMC406_RS14470	COG4774	siderophore transport
BAMMC406_RS14475	COG0625	glutathione transferase activity
BAMMC406_RS14480	COG0583	DNA-binding transcription factor activity
BAMMC406_RS14485	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BAMMC406_RS14490	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BAMMC406_RS14495	COG2080	2 iron, 2 sulfur cluster binding
BAMMC406_RS14505	COG3511	phospholipase C
BAMMC406_RS14520	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BAMMC406_RS14550	COG0596	Alpha beta hydrolase
BAMMC406_RS14560	COG0583	DNA-binding transcription factor activity
BAMMC406_RS14585	COG1609	Transcriptional regulator
BAMMC406_RS14635	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BAMMC406_RS14660	COG0672	)-iron permease
BAMMC406_RS14675	COG1012	belongs to the aldehyde dehydrogenase family
BAMMC406_RS14685	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BAMMC406_RS14690	COG0174	glutamine synthetase
BAMMC406_RS14705	COG3842	ATPase activity
BAMMC406_RS14710	COG1176	ABC-type spermidine putrescine transport system, permease component I
BAMMC406_RS14715	COG1177	transmembrane transport
BAMMC406_RS14725	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMMC406_RS14730	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMMC406_RS14760	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BAMMC406_RS14785	COG0583	DNA-binding transcription factor activity
BAMMC406_RS14790	COG2233	PERMEase
BAMMC406_RS14805	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
BAMMC406_RS14815	COG1706	bacterial-type flagellum-dependent cell motility
BAMMC406_RS14840	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BAMMC406_RS14845	COG1558	bacterial-type flagellum-dependent cell motility
BAMMC406_RS14850	COG1815	bacterial-type flagellum-dependent cell motility
BAMMC406_RS14860	COG2747	anti-sigma28 factor FlgM
BAMMC406_RS14870	COG0006	proline dipeptidase activity
BAMMC406_RS14875	COG1396	sequence-specific DNA binding
BAMMC406_RS14895	COG0741	lytic transglycosylase activity
BAMMC406_RS14900	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BAMMC406_RS14910	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BAMMC406_RS14915	COG1984	allophanate hydrolase subunit 2
BAMMC406_RS14930	COG4608	Belongs to the ABC transporter superfamily
BAMMC406_RS14935	COG0444	Belongs to the ABC transporter superfamily
BAMMC406_RS14940	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BAMMC406_RS14945	COG0601	transmembrane transport
BAMMC406_RS14950	COG0747	negative chemotaxis
BAMMC406_RS14965	COG0579	oxidoreductase
BAMMC406_RS14970	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BAMMC406_RS14980	COG3568	Endonuclease Exonuclease Phosphatase
BAMMC406_RS14985	COG1280	lysine exporter protein (LysE YggA)
BAMMC406_RS15000	COG2197	response regulator
BAMMC406_RS15005	COG0531	amino acid
BAMMC406_RS15020	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BAMMC406_RS15060	COG1157	protein secretion by the type III secretion system
BAMMC406_RS15085	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BAMMC406_RS15100	COG0697	spore germination
BAMMC406_RS15110	COG0667	Aldo Keto reductase
BAMMC406_RS15135	COG1560	Kdo2-lipid A biosynthetic process
BAMMC406_RS15140	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BAMMC406_RS15150	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BAMMC406_RS15160	COG0523	cobalamin synthesis protein
BAMMC406_RS15180	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BAMMC406_RS15205	COG1309	transcriptional regulator
BAMMC406_RS15285	COG2885	chlorophyll binding
BAMMC406_RS15285	COG3047	cAMP biosynthetic process
BAMMC406_RS15330	COG3188	usher protein
BAMMC406_RS15335	COG3121	Chaperone
BAMMC406_RS15360	COG2813	Specifically methylates the guanine in position
BAMMC406_RS15360	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BAMMC406_RS15365	COG2814	Major facilitator Superfamily
BAMMC406_RS15375	COG2207	Transcriptional regulator
BAMMC406_RS15380	COG1064	alcohol dehydrogenase
BAMMC406_RS15385	COG0708	Exodeoxyribonuclease III
BAMMC406_RS15390	COG2326	polyphosphate kinase activity
BAMMC406_RS15410	COG1077	Cell shape determining protein MreB Mrl
BAMMC406_RS15425	COG0768	penicillin binding
BAMMC406_RS15430	COG0772	Belongs to the SEDS family
BAMMC406_RS15445	COG0720	synthase
BAMMC406_RS15450	COG0602	queuosine metabolic process
BAMMC406_RS15465	COG2204	response regulator
BAMMC406_RS15470	COG5000	phosphorelay sensor kinase activity
BAMMC406_RS15500	COG0242	peptide deformylase activity
BAMMC406_RS15505	COG0758	DNA mediated transformation
BAMMC406_RS15520	COG0583	DNA-binding transcription factor activity
BAMMC406_RS15525	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BAMMC406_RS15560	COG1012	belongs to the aldehyde dehydrogenase family
BAMMC406_RS15575	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMMC406_RS15590	COG3511	phospholipase C
BAMMC406_RS15595	COG0583	DNA-binding transcription factor activity
BAMMC406_RS15600	COG1620	l-lactate permease
BAMMC406_RS15610	COG2918	glutathione biosynthetic process
BAMMC406_RS15625	COG2169	Transcriptional regulator
BAMMC406_RS15625	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BAMMC406_RS15645	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMMC406_RS15660	COG2203	Gaf domain
BAMMC406_RS15660	COG5001	Diguanylate cyclase
BAMMC406_RS15660	COG3706	GGDEF domain
BAMMC406_RS15660	COG4251	negative regulation of phosphorylation
BAMMC406_RS15920	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BAMMC406_RS15945	COG2814	Major facilitator Superfamily
BAMMC406_RS16305	COG0318	PFAM AMP-dependent synthetase and ligase
BAMMC406_RS16680	COG0840	transmembrane signaling receptor activity
BAMMC406_RS16725	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BAMMC406_RS16960	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BAMMC406_RS17335	COG0395	ABC-type sugar transport system, permease component
BAMMC406_RS17370	COG0070	glutamate synthase
BAMMC406_RS17370	COG0069	glutamate synthase activity
BAMMC406_RS17370	COG0067	glutamate synthase
BAMMC406_RS17490	COG2095	MarC family integral membrane protein
BAMMC406_RS17515	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BAMMC406_RS17890	COG0443	Heat shock 70 kDa protein
BAMMC406_RS18600	COG0583	DNA-binding transcription factor activity
BAMMC406_RS18660	COG0121	glutamine amidotransferase
BAMMC406_RS18680	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BAMMC406_RS18790	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BAMMC406_RS18790	COG3008	intermembrane lipid transfer
BAMMC406_RS18985	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BAMMC406_RS19035	COG0484	heat shock protein binding
BAMMC406_RS19645	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
BAMMC406_RS19985	COG0308	aminopeptidase N
BAMMC406_RS20395	COG3385	transposase activity
BAMMC406_RS20480	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMMC406_RS20830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BAMMC406_RS20960	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BAMMC406_RS21355	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BAMMC406_RS21755	COG2851	Citrate transporter
BAMMC406_RS21865	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BAMMC406_RS22310	COG0277	FAD linked oxidase domain protein
BAMMC406_RS22780	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BAMMC406_RS22990	COG0583	DNA-binding transcription factor activity
BAMMC406_RS23005	COG1172	Belongs to the binding-protein-dependent transport system permease family
BAMMC406_RS23060	COG2718	Belongs to the UPF0229 family
BAMMC406_RS23070	COG0477	Major facilitator Superfamily
BAMMC406_RS23165	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMMC406_RS23175	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMMC406_RS23410	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BAMMC406_RS23785	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMMC406_RS23790	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMMC406_RS23840	COG2982	Protein involved in outer membrane biogenesis
BAMMC406_RS23945	COG1199	ATP-dependent helicase activity
BAMMC406_RS23945	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BAMMC406_RS24500	COG1335	isochorismatase
BAMMC406_RS24540	COG0047	phosphoribosylformylglycinamidine synthase activity
BAMMC406_RS24540	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BAMMC406_RS24710	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BAMMC406_RS25335	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
BAMMC406_RS25575	COG1139	Iron-sulfur cluster binding protein
BAMMC406_RS25625	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
BAMMC406_RS25650	COG4566	intracellular signal transduction
BAMMC406_RS26055	COG0436	Aminotransferase
BAMMC406_RS26320	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BAMMC406_RS26490	COG3387	PFAM Glycoside hydrolase 15-related
BAMMC406_RS28045	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BAMMC406_RS28140	COG0318	PFAM AMP-dependent synthetase and ligase
BAMMC406_RS28855	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BAMMC406_RS29220	COG0067	glutamate synthase
BAMMC406_RS29220	COG0069	glutamate synthase activity
BAMMC406_RS29220	COG0070	glutamate synthase
BAMMC406_RS29350	COG2095	MarC family integral membrane protein
BAMMC406_RS30080	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BAMMC406_RS30325	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BAMMC406_RS30530	COG0138	bifunctional purine biosynthesis protein purh
BAMMC406_RS30725	COG0277	FAD linked oxidase domain protein
BAMMC406_RS30775	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BAMMC406_RS31110	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BAMMC406_RS31120	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BAMMC406_RS31120	COG2010	Cytochrome c
BAMMC406_RS31445	COG1129	ABC transporter
BAMMC406_RS31705	COG0477	Major facilitator Superfamily
BAMMC406_RS31830	COG0308	aminopeptidase N
BAMMC406_RS31850	COG0402	S-adenosylhomocysteine deaminase activity
BAMMC406_RS32105	COG0336	Belongs to the RNA methyltransferase TrmD family
BAMMC406_RS32260	COG1530	ribonuclease E activity
BAMMC406_RS32380	COG2204	response regulator
BAMMC406_RS33250	COG0210	DNA helicase
BAMMC406_RS33395	COG0438	transferase activity, transferring glycosyl groups
BAMMC406_RS33550	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BAMMC406_RS33820	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity