DM55_RS00010	PF02132	RecR protein
DM55_RS00010	PF13662	Toprim domain
DM55_RS00015	PF02575	YbaB/EbfC DNA-binding family
DM55_RS00020	PF12169	DNA polymerase III subunits gamma and tau domain III
DM55_RS00020	PF12170	DNA polymerase III tau subunit V interacting with alpha
DM55_RS00020	PF13177	DNA polymerase III, delta subunit
DM55_RS00025	PF00085	Thioredoxin
DM55_RS00035	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
DM55_RS00035	PF07497	Rho termination factor, RNA-binding domain
DM55_RS00035	PF07498	Rho termination factor, N-terminal domain
DM55_RS00040	PF13411	MerR HTH family regulatory protein
DM55_RS00045	PF07690	Major Facilitator Superfamily
DM55_RS00050	PF06167	Glucose-regulated metallo-peptidase M90
DM55_RS00055	PF01197	Ribosomal protein L31
DM55_RS00065	PF01554	MatE
DM55_RS00070	PF02627	Carboxymuconolactone decarboxylase family
DM55_RS00075	PF13411	MerR HTH family regulatory protein
DM55_RS00080	PF12836	Helix-hairpin-helix motif
DM55_RS00085	PF06078	Bacterial protein of unknown function (DUF937)
DM55_RS00090	PF00004	ATPase family associated with various cellular activities (AAA)
DM55_RS00090	PF02861	Clp amino terminal domain
DM55_RS00090	PF07724	AAA domain (Cdc48 subfamily)
DM55_RS00090	PF10431	C-terminal, D2-small domain, of ClpB protein
DM55_RS00095	PF02082	Transcriptional regulator
DM55_RS00105	PF02391	MoaE protein
DM55_RS00110	PF02597	ThiS family
DM55_RS00115	PF00994	Probable molybdopterin binding domain
DM55_RS00115	PF03453	MoeA N-terminal region (domain I and II)
DM55_RS00115	PF03454	MoeA C-terminal region (domain IV)
DM55_RS00120	PF00291	Pyridoxal-phosphate dependent enzyme
DM55_RS00120	PF14821	Threonine synthase N terminus
DM55_RS00125	PF00742	Homoserine dehydrogenase
DM55_RS00125	PF01842	ACT domain
DM55_RS00125	PF03447	Homoserine dehydrogenase, NAD binding domain
DM55_RS00135	PF04430	Protein of unknown function (DUF498/DUF598)
DM55_RS00140	PF13231	DM55_RS00140
DM55_RS00145	PF00893	Small Multidrug Resistance protein
DM55_RS00150	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
DM55_RS00155	PF00535	Glycosyl transferase family 2
DM55_RS00160	PF00551	Formyl transferase
DM55_RS00160	PF02911	Formyl transferase, C-terminal domain
DM55_RS00165	PF01370	NAD dependent epimerase/dehydratase family
DM55_RS00170	PF01522	Polysaccharide deacetylase
DM55_RS00175	PF00578	AhpC/TSA family
DM55_RS00180	PF02562	PhoH-like protein
DM55_RS00180	PF13638	PIN domain
DM55_RS00185	PF00877	NlpC/P60 family
DM55_RS00190	PF01384	DM55_RS00190
DM55_RS00195	PF01865	Protein of unknown function DUF47
DM55_RS00200	PF00772	DnaB-like helicase N terminal domain
DM55_RS00200	PF03796	DnaB-like helicase C terminal domain
DM55_RS00205	PF01281	Ribosomal protein L9, N-terminal domain
DM55_RS00205	PF03948	Ribosomal protein L9, C-terminal domain
DM55_RS00210	PF01084	Ribosomal protein S18
DM55_RS00220	PF01250	Ribosomal protein S6
DM55_RS00225	PF13490	Putative zinc-finger
DM55_RS00230	PF04542	Sigma-70 region 2
DM55_RS00230	PF08281	Sigma-70, region 4
DM55_RS00235	PF00149	Calcineurin-like phosphoesterase
DM55_RS00240	PF13473	Cupredoxin-like domain
DM55_RS00245	PF01527	Transposase
DM55_RS00250	PF00665	Integrase core domain
DM55_RS00250	PF13276	DM55_RS00250
DM55_RS00255	PF13276	DM55_RS00255
DM55_RS00255	PF13683	DM55_RS00255
DM55_RS00260	PF01527	Transposase
DM55_RS00265	PF00710	Asparaginase
DM55_RS00270	PF07769	DM55_RS00270
DM55_RS00280	PF04366	DM55_RS00280
DM55_RS00290	PF00534	Glycosyl transferases group 1
DM55_RS00290	PF13439	Glycosyltransferase Family 4
DM55_RS00295	PF13304	AAA domain
DM55_RS00300	PF00924	Mechanosensitive ion channel
DM55_RS00310	PF12796	Ankyrin repeats (3 copies)
DM55_RS00310	PF13606	Ankyrin repeat
DM55_RS00315	PF01026	TatD related DNase
DM55_RS00320	PF13420	Acetyltransferase (GNAT) domain
DM55_RS00325	PF13177	DNA polymerase III, delta subunit
DM55_RS00330	PF02223	Thymidylate kinase
DM55_RS00335	PF02618	YceG-like family
DM55_RS00340	PF01571	Aminomethyltransferase folate-binding domain
DM55_RS00345	PF05742	DM55_RS00345
DM55_RS00350	PF13673	Acetyltransferase (GNAT) domain
DM55_RS00355	PF07859	alpha/beta hydrolase fold
DM55_RS00360	PF00107	Zinc-binding dehydrogenase
DM55_RS00360	PF16884	DM55_RS00360
DM55_RS00365	PF03061	Thioesterase superfamily
DM55_RS00370	PF07876	Stress responsive A/B Barrel Domain
DM55_RS00380	PF00108	Thiolase, N-terminal domain
DM55_RS00380	PF02803	Thiolase, C-terminal domain
DM55_RS00385	PF00857	Isochorismatase family
DM55_RS00390	PF00378	Enoyl-CoA hydratase/isomerase family
DM55_RS00390	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
DM55_RS00390	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
DM55_RS00395	PF00501	AMP-binding enzyme
DM55_RS00395	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS00400	PF02696	DM55_RS00400
DM55_RS00405	PF01641	SelR domain
DM55_RS00410	PF04279	DM55_RS00410
DM55_RS00415	PF01722	BolA-like protein
DM55_RS00420	PF13616	PPIC-type PPIASE domain
DM55_RS00425	PF13527	Acetyltransferase (GNAT) domain
DM55_RS00430	PF02769	AIR synthase related protein, C-terminal domain
DM55_RS00430	PF13507	CobB/CobQ-like glutamine amidotransferase domain
DM55_RS00440	PF01266	FAD dependent oxidoreductase
DM55_RS00445	PF01256	Carbohydrate kinase
DM55_RS00445	PF03853	YjeF-related protein N-terminus
DM55_RS00450	PF00342	Phosphoglucose isomerase
DM55_RS00455	PF00005	ABC transporter
DM55_RS00460	PF13472	GDSL-like Lipase/Acylhydrolase family
DM55_RS00465	PF13616	PPIC-type PPIASE domain
DM55_RS00465	PF13624	SurA N-terminal domain
DM55_RS00495	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
DM55_RS00510	PF00004	ATPase family associated with various cellular activities (AAA)
DM55_RS00510	PF02190	ATP-dependent protease La (LON) domain
DM55_RS00510	PF05362	Lon protease (S16) C-terminal proteolytic domain
DM55_RS00515	PF06689	ClpX C4-type zinc finger
DM55_RS00515	PF07724	AAA domain (Cdc48 subfamily)
DM55_RS00515	PF10431	C-terminal, D2-small domain, of ClpB protein
DM55_RS00520	PF00574	Clp protease
DM55_RS00525	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
DM55_RS00525	PF05697	Bacterial trigger factor protein (TF)
DM55_RS00525	PF05698	Bacterial trigger factor protein (TF) C-terminus
DM55_RS00535	PF02595	Glycerate kinase family
DM55_RS00540	PF12802	MarR family
DM55_RS00545	PF02558	Ketopantoate reductase PanE/ApbA
DM55_RS00545	PF08546	Ketopantoate reductase PanE/ApbA C terminal
DM55_RS00550	PF00196	Bacterial regulatory proteins, luxR family
DM55_RS00555	PF13609	Gram-negative porin
DM55_RS00560	PF07690	Major Facilitator Superfamily
DM55_RS00565	PF00850	Histone deacetylase domain
DM55_RS00570	PF13091	PLD-like domain
DM55_RS00585	PF01527	Transposase
DM55_RS00590	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS00590	PF03466	LysR substrate binding domain
DM55_RS00595	PF00005	ABC transporter
DM55_RS00595	PF12857	DM55_RS00595
DM55_RS00600	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS00605	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS00610	PF13531	Bacterial extracellular solute-binding protein
DM55_RS00615	PF00717	Peptidase S24-like
DM55_RS00615	PF01726	LexA DNA binding domain
DM55_RS00625	PF11159	DM55_RS00625
DM55_RS00630	PF00582	Universal stress protein family
DM55_RS00635	PF00005	ABC transporter
DM55_RS00640	PF01061	DM55_RS00640
DM55_RS00650	PF03773	DM55_RS00650
DM55_RS00655	PF00248	Aldo/keto reductase family
DM55_RS00660	PF03061	Thioesterase superfamily
DM55_RS00665	PF01638	HxlR-like helix-turn-helix
DM55_RS00680	PF00375	Sodium:dicarboxylate symporter family
DM55_RS00685	PF01207	Dihydrouridine synthase (Dus)
DM55_RS00695	PF01610	DM55_RS00695
DM55_RS00695	PF13542	DM55_RS00695
DM55_RS00695	PF14690	DM55_RS00695
DM55_RS00705	PF01527	Transposase
DM55_RS00715	PF00494	Squalene/phytoene synthase
DM55_RS00720	PF07394	DM55_RS00720
DM55_RS00725	PF08811	DM55_RS00725
DM55_RS00735	PF00072	Response regulator receiver domain
DM55_RS00735	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS00740	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS00740	PF00672	HAMP domain
DM55_RS00740	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS00740	PF16524	DM55_RS00740
DM55_RS00745	PF00578	AhpC/TSA family
DM55_RS00750	PF02627	Carboxymuconolactone decarboxylase family
DM55_RS00755	PF02542	YgbB family
DM55_RS00760	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
DM55_RS00765	PF00270	DEAD/DEAH box helicase
DM55_RS00765	PF00271	Helicase conserved C-terminal domain
DM55_RS00765	PF02559	CarD-like/TRCF domain
DM55_RS00765	PF03461	TRCF domain
DM55_RS00775	PF01546	Peptidase family M20/M25/M40
DM55_RS00775	PF07687	Peptidase dimerisation domain
DM55_RS00780	PF00291	Pyridoxal-phosphate dependent enzyme
DM55_RS00785	PF12098	DM55_RS00785
DM55_RS00790	PF00905	Penicillin binding protein transpeptidase domain
DM55_RS00790	PF00912	Transglycosylase
DM55_RS00790	PF17092	DM55_RS00790
DM55_RS00795	PF04012	DM55_RS00795
DM55_RS00800	PF13432	Tetratricopeptide repeat
DM55_RS00805	PF01741	Large-conductance mechanosensitive channel, MscL
DM55_RS00820	PF04115	Ureidoglycolate hydrolase
DM55_RS00825	PF03561	Allantoicase repeat
DM55_RS00830	PF09349	OHCU decarboxylase
DM55_RS00835	PF01522	Polysaccharide deacetylase
DM55_RS00840	PF01177	Asp/Glu/Hydantoin racemase
DM55_RS00845	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
DM55_RS00850	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS00850	PF07729	FCD domain
DM55_RS00855	PF01610	DM55_RS00855
DM55_RS00855	PF13542	DM55_RS00855
DM55_RS00855	PF14690	DM55_RS00855
DM55_RS00860	PF02016	LD-carboxypeptidase
DM55_RS00865	PF14437	DM55_RS00865
DM55_RS00870	PF09350	DM55_RS00870
DM55_RS00875	PF09351	Domain of unknown function (DUF1993)
DM55_RS00885	PF00117	Glutamine amidotransferase class-I
DM55_RS00885	PF00958	GMP synthase C terminal domain
DM55_RS00885	PF02540	NAD synthase
DM55_RS00895	PF00478	IMP dehydrogenase / GMP reductase domain
DM55_RS00895	PF00571	CBS domain
DM55_RS00900	PF05988	DM55_RS00900
DM55_RS00910	PF13360	PQQ-like domain
DM55_RS00915	PF00892	EamA-like transporter family
DM55_RS00920	PF03658	RnfH family Ubiquitin
DM55_RS00925	PF03364	Polyketide cyclase / dehydrase and lipid transport
DM55_RS00930	PF01668	SmpB protein
DM55_RS00935	PF01145	SPFH domain / Band 7 family
DM55_RS00935	PF16200	DM55_RS00935
DM55_RS00940	PF01957	NfeD-like C-terminal, partner-binding
DM55_RS00945	PF00391	PEP-utilising enzyme, mobile domain
DM55_RS00945	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
DM55_RS00945	PF02896	PEP-utilising enzyme, TIM barrel domain
DM55_RS00950	PF05023	Phytochelatin synthase
DM55_RS00960	PF00082	Subtilase family
DM55_RS00960	PF09286	Pro-kumamolisin, activation domain
DM55_RS00965	PF03618	DM55_RS00965
DM55_RS00975	PF01527	Transposase
DM55_RS00980	PF00588	SpoU rRNA Methylase family
DM55_RS00985	PF01351	Ribonuclease HII
DM55_RS00990	PF02684	DM55_RS00990
DM55_RS00995	PF00132	Bacterial transferase hexapeptide (six repeats)
DM55_RS00995	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
DM55_RS01000	PF07977	FabA-like domain
DM55_RS01005	PF00132	Bacterial transferase hexapeptide (six repeats)
DM55_RS01005	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
DM55_RS01010	PF03938	Outer membrane protein (OmpH-like)
DM55_RS01015	PF01103	Surface antigen
DM55_RS01015	PF07244	Surface antigen variable number repeat
DM55_RS01020	PF02163	Peptidase family M50
DM55_RS01020	PF13180	PDZ domain
DM55_RS01025	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
DM55_RS01025	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
DM55_RS01025	PF13288	DXP reductoisomerase C-terminal domain
DM55_RS01030	PF01148	Cytidylyltransferase family
DM55_RS01035	PF01255	Putative undecaprenyl diphosphate synthase
DM55_RS01040	PF01765	Ribosome recycling factor
DM55_RS01045	PF00696	Amino acid kinase family
DM55_RS01050	PF00889	Elongation factor TS
DM55_RS01055	PF00318	Ribosomal protein S2
DM55_RS01065	PF00557	Metallopeptidase family M24
DM55_RS01070	PF01909	Nucleotidyltransferase domain
DM55_RS01070	PF01966	HD domain
DM55_RS01070	PF08335	GlnD PII-uridylyltransferase
DM55_RS01075	PF00849	RNA pseudouridylate synthase
DM55_RS01075	PF01479	S4 domain
DM55_RS01080	PF01327	Polypeptide deformylase
DM55_RS01085	PF00533	BRCA1 C Terminus (BRCT) domain
DM55_RS01085	PF01653	NAD-dependent DNA ligase adenylation domain
DM55_RS01085	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
DM55_RS01085	PF03120	NAD-dependent DNA ligase OB-fold domain
DM55_RS01085	PF12826	Helix-hairpin-helix motif
DM55_RS01085	PF14520	Helix-hairpin-helix domain
DM55_RS01095	PF04354	ZipA, C-terminal FtsZ-binding domain
DM55_RS01100	PF02463	RecF/RecN/SMC N terminal domain
DM55_RS01100	PF06470	SMC proteins Flexible Hinge Domain
DM55_RS01105	PF00892	EamA-like transporter family
DM55_RS01110	PF00155	Aminotransferase class I and II
DM55_RS01115	PF00132	Bacterial transferase hexapeptide (six repeats)
DM55_RS01115	PF14602	Hexapeptide repeat of succinyl-transferase
DM55_RS01115	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
DM55_RS01120	PF03960	ArsC family
DM55_RS01125	PF01546	Peptidase family M20/M25/M40
DM55_RS01125	PF07687	Peptidase dimerisation domain
DM55_RS01130	PF05175	Methyltransferase small domain
DM55_RS01140	PF13091	PLD-like domain
DM55_RS01140	PF13396	DM55_RS01140
DM55_RS01145	PF00255	Glutathione peroxidase
DM55_RS01150	PF00005	ABC transporter
DM55_RS01150	PF12848	ABC transporter
DM55_RS01150	PF16326	DM55_RS01150
DM55_RS01155	PF11065	DM55_RS01155
DM55_RS01160	PF05362	Lon protease (S16) C-terminal proteolytic domain
DM55_RS01160	PF13481	AAA domain
DM55_RS01165	PF00842	Alanine racemase, C-terminal domain
DM55_RS01165	PF01168	Alanine racemase, N-terminal domain
DM55_RS01170	PF07690	Major Facilitator Superfamily
DM55_RS01175	PF08543	Phosphomethylpyrimidine kinase
DM55_RS01180	PF08907	DM55_RS01180
DM55_RS01185	PF03167	Uracil DNA glycosylase superfamily
DM55_RS01190	PF00583	Acetyltransferase (GNAT) family
DM55_RS01195	PF00814	Glycoprotease family
DM55_RS01200	PF00887	Acyl CoA binding protein
DM55_RS01205	PF00270	DEAD/DEAH box helicase
DM55_RS01205	PF00271	Helicase conserved C-terminal domain
DM55_RS01210	PF05598	DM55_RS01210
DM55_RS01215	PF01527	Transposase
DM55_RS01225	PF13751	DM55_RS01225
DM55_RS01230	PF00463	Isocitrate lyase family
DM55_RS01235	PF00582	Universal stress protein family
DM55_RS01240	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS01240	PF03466	LysR substrate binding domain
DM55_RS01245	PF00702	haloacid dehalogenase-like hydrolase
DM55_RS01250	PF01274	Malate synthase
DM55_RS01255	PF06094	AIG2-like family
DM55_RS01260	PF03737	Demethylmenaquinone methyltransferase
DM55_RS01265	PF02311	AraC-like ligand binding domain
DM55_RS01265	PF12833	Helix-turn-helix domain
DM55_RS01275	PF00583	Acetyltransferase (GNAT) family
DM55_RS01295	PF00749	tRNA synthetases class I (E and Q), catalytic domain
DM55_RS01300	PF01734	Patatin-like phospholipase
DM55_RS01305	PF00877	NlpC/P60 family
DM55_RS01310	PF00005	ABC transporter
DM55_RS01310	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
DM55_RS01315	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS01320	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS01325	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
DM55_RS01330	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS01335	PF12778	DM55_RS01335
DM55_RS01345	PF00384	Molybdopterin oxidoreductase
DM55_RS01345	PF01568	Molydopterin dinucleotide binding domain
DM55_RS01345	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
DM55_RS01350	PF00970	Oxidoreductase FAD-binding domain
DM55_RS01360	PF00037	4Fe-4S binding domain
DM55_RS01360	PF11953	Domain of unknown function (DUF3470)
DM55_RS01365	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS01370	PF00557	Metallopeptidase family M24
DM55_RS01375	PF11903	DM55_RS01375
DM55_RS01380	PF00206	Lyase
DM55_RS01380	PF13535	ATP-grasp domain
DM55_RS01380	PF14698	Argininosuccinate lyase C-terminal
DM55_RS01385	PF00291	Pyridoxal-phosphate dependent enzyme
DM55_RS01390	PF00288	GHMP kinases N terminal domain
DM55_RS01395	PF01507	Phosphoadenosine phosphosulfate reductase family
DM55_RS01400	PF10111	Glycosyltransferase like family 2
DM55_RS01405	PF00266	Aminotransferase class-V
DM55_RS01410	PF01757	DM55_RS01410
DM55_RS01420	PF02779	Transketolase, pyrimidine binding domain
DM55_RS01420	PF17147	DM55_RS01420
DM55_RS01425	PF00456	Transketolase, thiamine diphosphate binding domain
DM55_RS01430	PF13469	Sulfotransferase family
DM55_RS01435	PF14305	DM55_RS01435
DM55_RS01440	PF13649	Methyltransferase domain
DM55_RS01445	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
DM55_RS01450	PF03567	Sulfotransferase family
DM55_RS01455	PF00501	AMP-binding enzyme
DM55_RS01455	PF00550	Phosphopantetheine attachment site
DM55_RS01455	PF00668	Condensation domain
DM55_RS01455	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS01460	PF00501	AMP-binding enzyme
DM55_RS01460	PF00550	Phosphopantetheine attachment site
DM55_RS01460	PF00668	Condensation domain
DM55_RS01460	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS01460	PF13745	HxxPF-repeated domain
DM55_RS01465	PF13454	FAD-NAD(P)-binding
DM55_RS01470	PF05977	Transmembrane secretion effector
DM55_RS01475	PF00501	AMP-binding enzyme
DM55_RS01475	PF00550	Phosphopantetheine attachment site
DM55_RS01475	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS01480	PF01583	Adenylylsulphate kinase
DM55_RS01485	PF13437	HlyD family secretion protein
DM55_RS01485	PF13533	Biotin-lipoyl like
DM55_RS01490	PF00873	AcrB/AcrD/AcrF family
DM55_RS01500	PF03797	Autotransporter beta-domain
DM55_RS01500	PF13472	GDSL-like Lipase/Acylhydrolase family
DM55_RS01515	PF01610	DM55_RS01515
DM55_RS01515	PF13542	DM55_RS01515
DM55_RS01515	PF14690	DM55_RS01515
DM55_RS01525	PF00696	Amino acid kinase family
DM55_RS01525	PF01842	ACT domain
DM55_RS01525	PF13840	ACT domain
DM55_RS01530	PF01171	PP-loop family
DM55_RS01530	PF09179	TilS substrate binding domain
DM55_RS01530	PF11734	TilS substrate C-terminal domain
DM55_RS01535	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
DM55_RS01540	PF00730	HhH-GPD superfamily base excision DNA repair protein
DM55_RS01545	PF01406	tRNA synthetases class I (C) catalytic domain
DM55_RS01545	PF09190	DALR domain
DM55_RS01550	PF13432	Tetratricopeptide repeat
DM55_RS01555	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
DM55_RS01560	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
DM55_RS01565	PF00149	Calcineurin-like phosphoesterase
DM55_RS01570	PF00132	Bacterial transferase hexapeptide (six repeats)
DM55_RS01575	PF00588	SpoU rRNA Methylase family
DM55_RS01580	PF00459	Inositol monophosphatase family
DM55_RS01595	PF00488	MutS domain V
DM55_RS01595	PF01624	MutS domain I
DM55_RS01595	PF05188	MutS domain II
DM55_RS01595	PF05190	MutS family domain IV
DM55_RS01595	PF05192	MutS domain III
DM55_RS01610	PF08007	Cupin superfamily protein
DM55_RS01620	PF12706	Beta-lactamase superfamily domain
DM55_RS01625	PF06804	NlpB/DapX lipoprotein
DM55_RS01630	PF00701	Dihydrodipicolinate synthetase family
DM55_RS01640	PF00579	tRNA synthetases class I (W and Y)
DM55_RS01650	PF01300	Telomere recombination
DM55_RS01655	PF02811	PHP domain
DM55_RS01660	PF12697	Alpha/beta hydrolase family
DM55_RS01665	PF04305	DM55_RS01665
DM55_RS01670	PF00132	Bacterial transferase hexapeptide (six repeats)
DM55_RS01675	PF01430	Hsp33 protein
DM55_RS01685	PF04977	Septum formation initiator
DM55_RS01690	PF00113	Enolase, C-terminal TIM barrel domain
DM55_RS01690	PF03952	Enolase, N-terminal domain
DM55_RS01695	PF00793	DAHP synthetase I family
DM55_RS01700	PF00117	Glutamine amidotransferase class-I
DM55_RS01700	PF06418	CTP synthase N-terminus
DM55_RS01705	PF12697	Alpha/beta hydrolase family
DM55_RS01710	PF00753	Metallo-beta-lactamase superfamily
DM55_RS01710	PF03772	DM55_RS01710
DM55_RS01710	PF13567	DM55_RS01710
DM55_RS01715	PF01026	TatD related DNase
DM55_RS01720	PF00005	ABC transporter
DM55_RS01725	PF02687	DM55_RS01725
DM55_RS01725	PF12704	MacB-like periplasmic core domain
DM55_RS01735	PF01368	DHH family
DM55_RS01735	PF02272	DHHA1 domain
DM55_RS01740	PF00472	RF-1 domain
DM55_RS01740	PF03462	PCRF domain
DM55_RS01745	PF00152	tRNA synthetases class II (D, K and N)
DM55_RS01745	PF01336	OB-fold nucleic acid binding domain
DM55_RS01750	PF05433	DM55_RS01750
DM55_RS01755	PF04384	Iron-sulphur cluster assembly
DM55_RS01760	PF00111	2Fe-2S iron-sulfur cluster binding domain
DM55_RS01765	PF00012	Hsp70 protein
DM55_RS01770	PF07743	HSCB C-terminal oligomerisation domain
DM55_RS01775	PF01521	Iron-sulphur cluster biosynthesis
DM55_RS01780	PF01592	NifU-like N terminal domain
DM55_RS01785	PF00266	Aminotransferase class-V
DM55_RS01790	PF02082	Transcriptional regulator
DM55_RS01795	PF01451	Low molecular weight phosphotyrosine protein phosphatase
DM55_RS01805	PF02589	Uncharacterised ACR, YkgG family COG1556
DM55_RS01805	PF11870	DM55_RS01805
DM55_RS01805	PF13183	4Fe-4S dicluster domain
DM55_RS01810	PF02754	DM55_RS01810
DM55_RS01815	PF01614	Bacterial transcriptional regulator
DM55_RS01815	PF09339	IclR helix-turn-helix domain
DM55_RS01825	PF02401	LytB protein
DM55_RS01830	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
DM55_RS01835	PF04002	RadC-like JAB domain
DM55_RS01840	PF00830	Ribosomal L28 family
DM55_RS01845	PF00471	Ribosomal protein L33
DM55_RS01850	PF00890	FAD binding domain
DM55_RS01850	PF02910	Fumarate reductase flavoprotein C-term
DM55_RS01855	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
DM55_RS01855	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
DM55_RS01860	PF02445	Quinolinate synthetase A protein
DM55_RS01865	PF00487	DM55_RS01865
DM55_RS01865	PF01610	DM55_RS01865
DM55_RS01870	PF00924	Mechanosensitive ion channel
DM55_RS01875	PF01189	NOL1/NOP2/sun family
DM55_RS01880	PF00551	Formyl transferase
DM55_RS01885	PF01687	Riboflavin kinase
DM55_RS01885	PF06574	FAD synthetase
DM55_RS01890	PF00133	tRNA synthetases class I (I, L, M and V)
DM55_RS01890	PF06827	Zinc finger found in FPG and IleRS
DM55_RS01890	PF08264	Anticodon-binding domain of tRNA
DM55_RS01895	PF01252	DM55_RS01895
DM55_RS01900	PF02441	Flavoprotein
DM55_RS01900	PF04127	DNA / pantothenate metabolism flavoprotein
DM55_RS01905	PF00692	dUTPase
DM55_RS01910	PF03988	DM55_RS01910
DM55_RS01920	PF01527	Transposase
DM55_RS01925	PF13276	DM55_RS01925
DM55_RS01925	PF13683	DM55_RS01925
DM55_RS01930	PF00324	Amino acid permease
DM55_RS01935	PF00004	ATPase family associated with various cellular activities (AAA)
DM55_RS01935	PF02861	Clp amino terminal domain
DM55_RS01935	PF07724	AAA domain (Cdc48 subfamily)
DM55_RS01935	PF10431	C-terminal, D2-small domain, of ClpB protein
DM55_RS01940	PF02617	ATP-dependent Clp protease adaptor protein ClpS
DM55_RS01945	PF13276	DM55_RS01945
DM55_RS01945	PF13683	DM55_RS01945
DM55_RS01950	PF01527	Transposase
DM55_RS01955	PF00313	'Cold-shock' DNA-binding domain
DM55_RS01965	PF00406	Adenylate kinase
DM55_RS01965	PF05191	Adenylate kinase, active site lid
DM55_RS01970	PF02348	Cytidylyltransferase
DM55_RS01975	PF03966	Trm112p-like protein
DM55_RS01980	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
DM55_RS01985	PF02601	DM55_RS01985
DM55_RS01985	PF13742	DM55_RS01985
DM55_RS01990	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
DM55_RS01990	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
DM55_RS01995	PF05598	DM55_RS01995
DM55_RS02000	PF01527	Transposase
DM55_RS02005	PF13276	DM55_RS02005
DM55_RS02005	PF13683	DM55_RS02005
DM55_RS02010	PF01926	50S ribosome-binding GTPase
DM55_RS02010	PF10396	GTP-binding protein TrmE N-terminus
DM55_RS02010	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
DM55_RS02020	PF02096	60Kd inner membrane protein
DM55_RS02020	PF14849	YidC periplasmic domain
DM55_RS02025	PF01809	DM55_RS02025
DM55_RS02030	PF00825	Ribonuclease P
DM55_RS02035	PF00468	Ribosomal protein L34
DM55_RS02040	PF00308	Bacterial dnaA  protein
DM55_RS02040	PF08299	Bacterial dnaA protein helix-turn-helix
DM55_RS02040	PF11638	DnaA N-terminal domain
DM55_RS02045	PF00712	DNA polymerase III beta subunit, N-terminal domain
DM55_RS02045	PF02767	DNA polymerase III beta subunit, central domain
DM55_RS02045	PF02768	DNA polymerase III beta subunit, C-terminal domain
DM55_RS02050	PF00204	DNA gyrase B
DM55_RS02050	PF00986	DNA gyrase B subunit, carboxyl terminus
DM55_RS02050	PF01751	Toprim domain
DM55_RS02050	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS02055	PF01527	Transposase
DM55_RS02060	PF13276	DM55_RS02060
DM55_RS02060	PF13683	DM55_RS02060
DM55_RS02065	PF02627	Carboxymuconolactone decarboxylase family
DM55_RS02070	PF12256	Insecticide toxin TcdB middle/N-terminal region
DM55_RS02070	PF13517	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
DM55_RS02105	PF00498	FHA domain
DM55_RS02110	PF00069	Protein kinase domain
DM55_RS02110	PF13191	AAA ATPase domain
DM55_RS02125	PF02624	YcaO-like family
DM55_RS02130	PF00596	Class II Aldolase and Adducin N-terminal domain
DM55_RS02135	PF00563	EAL domain
DM55_RS02135	PF00990	GGDEF domain
DM55_RS02140	PF01943	DM55_RS02140
DM55_RS02145	PF00534	Glycosyl transferases group 1
DM55_RS02150	PF00483	Nucleotidyl transferase
DM55_RS02150	PF01050	Mannose-6-phosphate isomerase
DM55_RS02160	PF00534	Glycosyl transferases group 1
DM55_RS02160	PF13439	Glycosyltransferase Family 4
DM55_RS02165	PF01569	PAP2 superfamily
DM55_RS02170	PF00158	Sigma-54 interaction domain
DM55_RS02170	PF02954	Bacterial regulatory protein, Fis family
DM55_RS02185	PF08893	DM55_RS02185
DM55_RS02195	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS02195	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS02200	PF00550	Phosphopantetheine attachment site
DM55_RS02205	PF13545	Crp-like helix-turn-helix domain
DM55_RS02210	PF13545	Crp-like helix-turn-helix domain
DM55_RS02215	PF02397	DM55_RS02215
DM55_RS02215	PF13727	CoA-binding domain
DM55_RS02220	PF02563	Polysaccharide biosynthesis/export protein
DM55_RS02220	PF10531	SLBB domain
DM55_RS02225	PF00534	Glycosyl transferases group 1
DM55_RS02240	PF00107	Zinc-binding dehydrogenase
DM55_RS02240	PF08240	Alcohol dehydrogenase GroES-like domain
DM55_RS02245	PF01610	DM55_RS02245
DM55_RS02245	PF13542	DM55_RS02245
DM55_RS02245	PF14690	DM55_RS02245
DM55_RS02250	PF06719	DM55_RS02250
DM55_RS02250	PF12833	Helix-turn-helix domain
DM55_RS02255	PF01435	Peptidase family M48
DM55_RS02260	PF07690	Major Facilitator Superfamily
DM55_RS02265	PF07021	Methionine biosynthesis protein MetW
DM55_RS02270	PF00561	alpha/beta hydrolase fold
DM55_RS02275	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS02280	PF13419	Haloacid dehalogenase-like hydrolase
DM55_RS02285	PF00696	Amino acid kinase family
DM55_RS02290	PF14375	DM55_RS02290
DM55_RS02295	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS02300	PF00072	Response regulator receiver domain
DM55_RS02300	PF02954	Bacterial regulatory protein, Fis family
DM55_RS02305	PF00004	ATPase family associated with various cellular activities (AAA)
DM55_RS02305	PF07724	AAA domain (Cdc48 subfamily)
DM55_RS02305	PF10431	C-terminal, D2-small domain, of ClpB protein
DM55_RS02310	PF00227	Proteasome subunit
DM55_RS02315	PF01258	Prokaryotic dksA/traR C4-type zinc finger
DM55_RS02320	PF02492	CobW/HypB/UreG, nucleotide-binding domain
DM55_RS02320	PF07683	Cobalamin synthesis protein cobW C-terminal domain
DM55_RS02325	PF10672	S-adenosylmethionine-dependent methyltransferase
DM55_RS02330	PF00589	Phage integrase family
DM55_RS02330	PF02899	Phage integrase, N-terminal SAM-like domain
DM55_RS02335	PF04340	Protein of unknown function, DUF484
DM55_RS02340	PF01678	Diaminopimelate epimerase
DM55_RS02345	PF03279	DM55_RS02345
DM55_RS02350	PF00438	S-adenosylmethionine synthetase, N-terminal domain
DM55_RS02350	PF02772	S-adenosylmethionine synthetase, central domain
DM55_RS02350	PF02773	S-adenosylmethionine synthetase, C-terminal domain
DM55_RS02360	PF05721	Phytanoyl-CoA dioxygenase (PhyH)
DM55_RS02365	PF11381	DM55_RS02365
DM55_RS02370	PF00248	Aldo/keto reductase family
DM55_RS02380	PF00892	EamA-like transporter family
DM55_RS02385	PF07690	Major Facilitator Superfamily
DM55_RS02395	PF01636	Phosphotransferase enzyme family
DM55_RS02405	PF00171	Aldehyde dehydrogenase family
DM55_RS02415	PF00732	GMC oxidoreductase
DM55_RS02415	PF05199	GMC oxidoreductase
DM55_RS02420	PF02120	Flagellar hook-length control protein FliK
DM55_RS02425	PF02050	Flagellar FliJ protein
DM55_RS02430	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
DM55_RS02435	PF02108	DM55_RS02435
DM55_RS02440	PF01706	FliG C-terminal domain
DM55_RS02440	PF14841	FliG middle domain
DM55_RS02440	PF14842	FliG N-terminal domain
DM55_RS02445	PF01514	Secretory protein of YscJ/FliF family
DM55_RS02445	PF08345	DM55_RS02445
DM55_RS02450	PF02049	DM55_RS02450
DM55_RS02455	PF02561	Flagellar protein FliS
DM55_RS02460	PF05400	Flagellar protein FliT
DM55_RS02465	PF02120	Flagellar hook-length control protein FliK
DM55_RS02470	PF01312	FlhB HrpN YscU SpaS Family
DM55_RS02475	PF16357	DM55_RS02475
DM55_RS02480	PF02625	XdhC and CoxI family
DM55_RS02480	PF13478	XdhC Rossmann domain
DM55_RS02485	PF13520	Amino acid permease
DM55_RS02490	PF00072	Response regulator receiver domain
DM55_RS02490	PF00196	Bacterial regulatory proteins, luxR family
DM55_RS02505	PF00175	Oxidoreductase NAD-binding domain
DM55_RS02505	PF00970	Oxidoreductase FAD-binding domain
DM55_RS02510	PF01810	DM55_RS02510
DM55_RS02515	PF03372	Endonuclease/Exonuclease/phosphatase family
DM55_RS02530	PF00004	ATPase family associated with various cellular activities (AAA)
DM55_RS02535	PF01266	FAD dependent oxidoreductase
DM55_RS02540	PF01355	High potential iron-sulfur protein
DM55_RS02545	PF00083	Sugar (and other) transporter
DM55_RS02545	PF07690	Major Facilitator Superfamily
DM55_RS02550	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
DM55_RS02555	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS02565	PF00005	ABC transporter
DM55_RS02565	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
DM55_RS02570	PF00005	ABC transporter
DM55_RS02570	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
DM55_RS02575	PF01963	DM55_RS02575
DM55_RS02580	PF06166	DM55_RS02580
DM55_RS02585	PF06149	DM55_RS02585
DM55_RS02595	PF03746	LamB/YcsF family
DM55_RS02600	PF02626	Allophanate hydrolase subunit 2
DM55_RS02605	PF02682	Allophanate hydrolase subunit 1
DM55_RS02610	PF13463	Winged helix DNA-binding domain
DM55_RS02615	PF01812	5-formyltetrahydrofolate cyclo-ligase family
DM55_RS02620	PF01464	Transglycosylase SLT domain
DM55_RS02625	PF13460	NADH(P)-binding
DM55_RS02630	PF13410	Glutathione S-transferase, C-terminal domain
DM55_RS02630	PF13417	Glutathione S-transferase, N-terminal domain
DM55_RS02635	PF01743	Poly A polymerase head domain
DM55_RS02635	PF01966	HD domain
DM55_RS02635	PF12627	Probable RNA and SrmB- binding site of polymerase A
DM55_RS02640	PF11747	DM55_RS02640
DM55_RS02645	PF05130	FlgN protein
DM55_RS02650	PF04316	Anti-sigma-28 factor, FlgM
DM55_RS02655	PF13144	SAF-like
DM55_RS02665	PF00460	Flagella basal body rod protein
DM55_RS02670	PF00460	Flagella basal body rod protein
DM55_RS02670	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
DM55_RS02675	PF03963	DM55_RS02675
DM55_RS02675	PF13860	FlgD Ig-like domain
DM55_RS02675	PF13861	FlgD Tudor-like domain
DM55_RS02680	PF00460	Flagella basal body rod protein
DM55_RS02680	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
DM55_RS02680	PF07559	Flagellar basal body protein FlaE
DM55_RS02685	PF00460	Flagella basal body rod protein
DM55_RS02685	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
DM55_RS02690	PF00460	Flagella basal body rod protein
DM55_RS02690	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
DM55_RS02695	PF02107	DM55_RS02695
DM55_RS02700	PF02119	DM55_RS02700
DM55_RS02705	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
DM55_RS02705	PF10135	DM55_RS02705
DM55_RS02710	PF07238	PilZ domain
DM55_RS02710	PF07317	Flagellar regulator YcgR
DM55_RS02715	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
DM55_RS02720	PF00669	Bacterial flagellin N-terminal helical region
DM55_RS02725	PF00860	Permease family
DM55_RS02730	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS02730	PF03466	LysR substrate binding domain
DM55_RS02735	PF02417	DM55_RS02735
DM55_RS02740	PF02417	DM55_RS02740
DM55_RS02750	PF03831	PhnA protein
DM55_RS02750	PF08274	PhnA Zinc-Ribbon
DM55_RS02755	PF06912	DM55_RS02755
DM55_RS02760	PF13609	Gram-negative porin
DM55_RS02775	PF03706	DM55_RS02775
DM55_RS02780	PF13506	Glycosyl transferase family 21
DM55_RS02785	PF13276	DM55_RS02785
DM55_RS02785	PF13683	DM55_RS02785
DM55_RS02790	PF01527	Transposase
DM55_RS02795	PF04966	Carbohydrate-selective porin, OprB family
DM55_RS02810	PF01566	DM55_RS02810
DM55_RS02825	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
DM55_RS02825	PF07992	Pyridine nucleotide-disulphide oxidoreductase
DM55_RS02830	PF00764	Arginosuccinate synthase
DM55_RS02845	PF00403	Heavy-metal-associated domain
DM55_RS02855	PF00122	E1-E2 ATPase
DM55_RS02855	PF00702	haloacid dehalogenase-like hydrolase
DM55_RS02855	PF04945	YHS domain
DM55_RS02860	PF04011	LemA family
DM55_RS02865	PF04536	TLP18
DM55_RS02870	PF04536	TLP18
DM55_RS02880	PF02321	Outer membrane efflux protein
DM55_RS02885	PF11604	Copper binding periplasmic protein CusF
DM55_RS02885	PF16576	DM55_RS02885
DM55_RS02890	PF00873	AcrB/AcrD/AcrF family
DM55_RS02895	PF11604	Copper binding periplasmic protein CusF
DM55_RS02905	PF01382	Avidin family
DM55_RS02910	PF01380	SIS domain
DM55_RS02910	PF13522	Glutamine amidotransferase domain
DM55_RS02915	PF00132	Bacterial transferase hexapeptide (six repeats)
DM55_RS02915	PF12804	MobA-like NTP transferase domain
DM55_RS02920	PF01171	PP-loop family
DM55_RS02925	PF02152	Dihydroneopterin aldolase
DM55_RS02930	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS02935	PF02636	Putative S-adenosyl-L-methionine-dependent methyltransferase
DM55_RS02940	PF11146	DM55_RS02940
DM55_RS02950	PF00294	pfkB family carbohydrate kinase
DM55_RS02955	PF07221	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
DM55_RS02960	PF00356	Bacterial regulatory proteins, lacI family
DM55_RS02960	PF13377	Periplasmic binding protein-like domain
DM55_RS02965	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS02965	PF02203	Tar ligand binding domain homologue
DM55_RS02970	PF13593	SBF-like CPA transporter family (DUF4137)
DM55_RS02980	PF13609	Gram-negative porin
DM55_RS02985	PF01527	Transposase
DM55_RS02990	PF13276	DM55_RS02990
DM55_RS02990	PF13683	DM55_RS02990
DM55_RS03005	PF00245	Alkaline phosphatase
DM55_RS03010	PF00245	Alkaline phosphatase
DM55_RS03020	PF03932	CutC family
DM55_RS03025	PF04055	Radical SAM superfamily
DM55_RS03025	PF06968	Biotin and Thiamin Synthesis associated domain
DM55_RS03030	PF13500	AAA domain
DM55_RS03035	PF00155	Aminotransferase class I and II
DM55_RS03040	PF00202	Aminotransferase class-III
DM55_RS03045	PF02129	X-Pro dipeptidyl-peptidase (S15 family)
DM55_RS03055	PF00106	short chain dehydrogenase
DM55_RS03060	PF00108	Thiolase, N-terminal domain
DM55_RS03060	PF02803	Thiolase, C-terminal domain
DM55_RS03065	PF00484	Carbonic anhydrase
DM55_RS03070	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
DM55_RS03075	PF00753	Metallo-beta-lactamase superfamily
DM55_RS03080	PF00005	ABC transporter
DM55_RS03085	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
DM55_RS03090	PF12802	MarR family
DM55_RS03095	PF00106	short chain dehydrogenase
DM55_RS03100	PF00106	short chain dehydrogenase
DM55_RS03105	PF01323	DSBA-like thioredoxin domain
DM55_RS03110	PF05036	Sporulation related domain
DM55_RS03115	PF00750	tRNA synthetases class I (R)
DM55_RS03115	PF03485	Arginyl tRNA synthetase N terminal domain
DM55_RS03115	PF05746	DALR anticodon binding domain
DM55_RS03120	PF08895	DM55_RS03120
DM55_RS03125	PF05598	DM55_RS03125
DM55_RS03125	PF13751	DM55_RS03125
DM55_RS03130	PF02566	OsmC-like protein
DM55_RS03135	PF11227	DM55_RS03135
DM55_RS03140	PF01979	Amidohydrolase family
DM55_RS03145	PF13230	Glutamine amidotransferases class-II
DM55_RS03155	PF00011	Hsp20/alpha crystallin family
DM55_RS03160	PF00011	Hsp20/alpha crystallin family
DM55_RS03165	PF00166	Chaperonin 10 Kd subunit
DM55_RS03175	PF00005	ABC transporter
DM55_RS03180	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS03185	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS03190	PF00497	Bacterial extracellular solute-binding proteins, family 3
DM55_RS03195	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
DM55_RS03195	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
DM55_RS03200	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS03200	PF03466	LysR substrate binding domain
DM55_RS03205	PF07690	Major Facilitator Superfamily
DM55_RS03210	PF00206	Lyase
DM55_RS03210	PF08328	Adenylosuccinate lyase C-terminal
DM55_RS03215	PF01202	Shikimate kinase
DM55_RS03220	PF02447	DM55_RS03220
DM55_RS03225	PF01081	KDPG and KHG aldolase
DM55_RS03230	PF00920	Dehydratase family
DM55_RS03235	PF01380	SIS domain
DM55_RS03235	PF01418	Helix-turn-helix domain, rpiR family
DM55_RS03240	PF03653	DM55_RS03240
DM55_RS03245	PF00171	Aldehyde dehydrogenase family
DM55_RS03250	PF06144	DNA polymerase III, delta subunit
DM55_RS03250	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
DM55_RS03255	PF04390	Lipopolysaccharide-assembly
DM55_RS03260	PF00133	tRNA synthetases class I (I, L, M and V)
DM55_RS03260	PF08264	Anticodon-binding domain of tRNA
DM55_RS03260	PF09334	tRNA synthetases class I (M)
DM55_RS03260	PF13603	Leucyl-tRNA synthetase, Domain 2
DM55_RS03265	PF02472	Biopolymer transport protein ExbD/TolR
DM55_RS03270	PF01618	DM55_RS03270
DM55_RS03275	PF01113	Dihydrodipicolinate reductase, N-terminus
DM55_RS03275	PF05173	Dihydrodipicolinate reductase, C-terminus
DM55_RS03280	PF04355	SmpA / OmlA family
DM55_RS03285	PF01475	Ferric uptake regulator family
DM55_RS03295	PF03561	Allantoicase repeat
DM55_RS03300	PF00375	Sodium:dicarboxylate symporter family
DM55_RS03305	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS03305	PF07729	FCD domain
DM55_RS03310	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS03310	PF03466	LysR substrate binding domain
DM55_RS03315	PF00484	Carbonic anhydrase
DM55_RS03320	PF02560	Cyanate lyase C-terminal domain
DM55_RS03325	PF07690	Major Facilitator Superfamily
DM55_RS03330	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
DM55_RS03330	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
DM55_RS03335	PF00456	Transketolase, thiamine diphosphate binding domain
DM55_RS03335	PF02779	Transketolase, pyrimidine binding domain
DM55_RS03335	PF02780	Transketolase, C-terminal domain
DM55_RS03340	PF01564	Spermine/spermidine synthase
DM55_RS03345	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
DM55_RS03350	PF04452	RNA methyltransferase
DM55_RS03360	PF01337	Barstar (barnase inhibitor)
DM55_RS03365	PF00545	ribonuclease
DM55_RS03370	PF00390	Malic enzyme, N-terminal domain
DM55_RS03370	PF01515	Phosphate acetyl/butaryl transferase
DM55_RS03370	PF03949	Malic enzyme, NAD binding domain
DM55_RS03370	PF12434	DM55_RS03370
DM55_RS03375	PF00586	AIR synthase related protein, N-terminal domain
DM55_RS03375	PF02769	AIR synthase related protein, C-terminal domain
DM55_RS03380	PF04608	Phosphatidylglycerophosphatase A
DM55_RS03385	PF02464	Competence-damaged protein
DM55_RS03390	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
DM55_RS03395	PF01263	Aldose 1-epimerase
DM55_RS03400	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS03405	PF02653	DM55_RS03405
DM55_RS03410	PF00005	ABC transporter
DM55_RS03415	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
DM55_RS03420	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS03425	PF01081	KDPG and KHG aldolase
DM55_RS03430	PF05035	2-keto-3-deoxy-galactonokinase
DM55_RS03435	PF01614	Bacterial transcriptional regulator
DM55_RS03435	PF09339	IclR helix-turn-helix domain
DM55_RS03445	PF00450	Serine carboxypeptidase
DM55_RS03450	PF00912	Transglycosylase
DM55_RS03455	PF01488	Shikimate / quinate 5-dehydrogenase
DM55_RS03455	PF08501	Shikimate dehydrogenase substrate binding domain
DM55_RS03460	PF00773	RNB domain
DM55_RS03465	PF05728	Uncharacterised protein family (UPF0227)
DM55_RS03470	PF01225	Mur ligase family, catalytic domain
DM55_RS03470	PF02875	Mur ligase family, glutamate ligase domain
DM55_RS03470	PF08245	Mur ligase middle domain
DM55_RS03480	PF08534	Redoxin
DM55_RS03485	PF01220	Dehydroquinase class II
DM55_RS03490	PF00364	Biotin-requiring enzyme
DM55_RS03495	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
DM55_RS03495	PF02785	Biotin carboxylase C-terminal domain
DM55_RS03495	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
DM55_RS03500	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
DM55_RS03505	PF11906	DM55_RS03505
DM55_RS03505	PF13719	DM55_RS03505
DM55_RS03510	PF08534	Redoxin
DM55_RS03515	PF00294	pfkB family carbohydrate kinase
DM55_RS03520	PF05433	DM55_RS03520
DM55_RS03525	PF07382	DM55_RS03525
DM55_RS03530	PF00268	Ribonucleotide reductase, small chain
DM55_RS03535	PF00317	Ribonucleotide reductase, all-alpha domain
DM55_RS03535	PF02867	Ribonucleotide reductase, barrel domain
DM55_RS03535	PF03477	ATP cone domain
DM55_RS03540	PF01510	N-acetylmuramoyl-L-alanine amidase
DM55_RS03550	PF01578	DM55_RS03550
DM55_RS03555	PF00448	SRP54-type protein, GTPase domain
DM55_RS03555	PF02881	SRP54-type protein, helical bundle domain
DM55_RS03555	PF02978	Signal peptide binding domain
DM55_RS03560	PF00156	Phosphoribosyl transferase domain
DM55_RS03565	PF01914	DM55_RS03565
DM55_RS03570	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
DM55_RS03570	PF03129	Anticodon binding domain
DM55_RS03570	PF04073	Aminoacyl-tRNA editing domain
DM55_RS03575	PF00293	NUDIX domain
DM55_RS03580	PF08750	DM55_RS03580
DM55_RS03585	PF00696	Amino acid kinase family
DM55_RS03585	PF01472	PUA domain
DM55_RS03590	PF01018	GTP1/OBG
DM55_RS03590	PF01926	50S ribosome-binding GTPase
DM55_RS03595	PF01016	Ribosomal L27 protein
DM55_RS03600	PF00829	Ribosomal prokaryotic L21 protein
DM55_RS03605	PF00348	Polyprenyl synthetase
DM55_RS03620	PF13276	DM55_RS03620
DM55_RS03620	PF13683	DM55_RS03620
DM55_RS03625	PF01527	Transposase
DM55_RS03630	PF00571	CBS domain
DM55_RS03630	PF01595	DM55_RS03630
DM55_RS03630	PF03471	Transporter associated domain
DM55_RS03635	PF00437	Type II/IV secretion system protein
DM55_RS03640	PF00482	Type II secretion system (T2SS), protein F
DM55_RS03645	PF01478	Type IV leader peptidase family
DM55_RS03645	PF06750	DM55_RS03645
DM55_RS03650	PF01121	Dephospho-CoA kinase
DM55_RS03655	PF07072	Protein of unknown function (DUF1342)
DM55_RS03660	PF03884	Domain of unknown function (DUF329)
DM55_RS03665	PF00293	NUDIX domain
DM55_RS03670	PF05673	Protein of unknown function (DUF815)
DM55_RS03675	PF01960	ArgJ family
DM55_RS03680	PF01043	SecA preprotein cross-linking domain
DM55_RS03680	PF02810	SEC-C motif
DM55_RS03680	PF07516	SecA Wing and Scaffold domain
DM55_RS03680	PF07517	SecA DEAD-like domain
DM55_RS03690	PF05258	DM55_RS03690
DM55_RS03695	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
DM55_RS03700	PF08534	Redoxin
DM55_RS03705	PF00091	Tubulin/FtsZ family, GTPase domain
DM55_RS03705	PF12327	FtsZ family, C-terminal domain
DM55_RS03710	PF02491	SHS2 domain inserted in FTSA
DM55_RS03710	PF14450	Cell division protein FtsA
DM55_RS03715	PF03799	Cell division protein FtsQ
DM55_RS03715	PF08478	POTRA domain, FtsQ-type
DM55_RS03720	PF01820	D-ala D-ala ligase N-terminus
DM55_RS03720	PF07478	D-ala D-ala ligase C-terminus
DM55_RS03725	PF01225	Mur ligase family, catalytic domain
DM55_RS03725	PF02875	Mur ligase family, glutamate ligase domain
DM55_RS03725	PF08245	Mur ligase middle domain
DM55_RS03730	PF03033	Glycosyltransferase family 28 N-terminal domain
DM55_RS03730	PF04101	Glycosyltransferase family 28 C-terminal domain
DM55_RS03735	PF01098	DM55_RS03735
DM55_RS03740	PF02875	Mur ligase family, glutamate ligase domain
DM55_RS03740	PF08245	Mur ligase middle domain
DM55_RS03745	PF00953	Glycosyl transferase family 4
DM55_RS03745	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
DM55_RS03750	PF01225	Mur ligase family, catalytic domain
DM55_RS03750	PF02875	Mur ligase family, glutamate ligase domain
DM55_RS03750	PF08245	Mur ligase middle domain
DM55_RS03755	PF02875	Mur ligase family, glutamate ligase domain
DM55_RS03755	PF08245	Mur ligase middle domain
DM55_RS03760	PF00905	Penicillin binding protein transpeptidase domain
DM55_RS03760	PF03717	Penicillin-binding Protein dimerisation domain
DM55_RS03765	PF04999	DM55_RS03765
DM55_RS03770	PF01795	MraW methylase family
DM55_RS03775	PF02381	MraZ protein
DM55_RS03780	PF03232	DM55_RS03780
DM55_RS03785	PF13609	Gram-negative porin
DM55_RS03790	PF05598	DM55_RS03790
DM55_RS03790	PF13751	DM55_RS03790
DM55_RS03795	PF00809	Pterin binding enzyme
DM55_RS03795	PF02310	B12 binding domain
DM55_RS03795	PF02607	B12 binding domain
DM55_RS03795	PF02965	Vitamin B12 dependent methionine synthase, activation domain
DM55_RS03800	PF02574	Homocysteine S-methyltransferase
DM55_RS03805	PF12091	DM55_RS03805
DM55_RS03810	PF11306	Protein of unknown function (DUF3108)
DM55_RS03815	PF01614	Bacterial transcriptional regulator
DM55_RS03815	PF09339	IclR helix-turn-helix domain
DM55_RS03820	PF01557	Fumarylacetoacetate (FAA) hydrolase family
DM55_RS03825	PF00378	Enoyl-CoA hydratase/isomerase family
DM55_RS03835	PF01734	Patatin-like phospholipase
DM55_RS03850	PF01467	Cytidylyltransferase
DM55_RS03860	PF03309	Type III pantothenate kinase
DM55_RS03865	PF02237	Biotin protein ligase C terminal domain
DM55_RS03865	PF03099	Biotin/lipoate A/B protein ligase family
DM55_RS03870	PF08238	Sel1 repeat
DM55_RS03875	PF02872	5'-nucleotidase, C-terminal domain
DM55_RS03880	PF02405	DM55_RS03880
DM55_RS03885	PF00005	ABC transporter
DM55_RS03890	PF02470	DM55_RS03890
DM55_RS03895	PF03886	Protein of unknown function (DUF330)
DM55_RS03900	PF04892	DM55_RS03900
DM55_RS03905	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
DM55_RS03910	PF12146	Putative lysophospholipase
DM55_RS03915	PF00768	D-alanyl-D-alanine carboxypeptidase
DM55_RS03915	PF07943	Penicillin-binding protein 5, C-terminal domain
DM55_RS03920	PF01063	Aminotransferase class IV
DM55_RS03925	PF04359	Protein of unknown function (DUF493)
DM55_RS03930	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS03930	PF03466	LysR substrate binding domain
DM55_RS03935	PF11142	DM55_RS03935
DM55_RS03940	PF03099	Biotin/lipoate A/B protein ligase family
DM55_RS03945	PF04055	Radical SAM superfamily
DM55_RS03945	PF16881	DM55_RS03945
DM55_RS03950	PF13751	DM55_RS03950
DM55_RS03960	PF01527	Transposase
DM55_RS03965	PF05598	DM55_RS03965
DM55_RS03975	PF13602	Zinc-binding dehydrogenase
DM55_RS03980	PF01019	Gamma-glutamyltranspeptidase
DM55_RS03990	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS03990	PF03466	LysR substrate binding domain
DM55_RS03995	PF00378	Enoyl-CoA hydratase/isomerase family
DM55_RS03995	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
DM55_RS03995	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
DM55_RS04000	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS04000	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS04000	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS04005	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS04005	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS04005	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS04010	PF02515	CoA-transferase family III
DM55_RS04015	PF04341	DM55_RS04015
DM55_RS04020	PF00474	Sodium:solute symporter family
DM55_RS04025	PF00375	Sodium:dicarboxylate symporter family
DM55_RS04035	PF00072	Response regulator receiver domain
DM55_RS04035	PF00158	Sigma-54 interaction domain
DM55_RS04035	PF02954	Bacterial regulatory protein, Fis family
DM55_RS04040	PF08534	Redoxin
DM55_RS04050	PF00975	Thioesterase domain
DM55_RS04060	PF00583	Acetyltransferase (GNAT) family
DM55_RS04065	PF01078	Magnesium chelatase, subunit ChlI
DM55_RS04065	PF13335	DM55_RS04065
DM55_RS04065	PF13541	Subunit ChlI of Mg-chelatase
DM55_RS04070	PF04380	DM55_RS04070
DM55_RS04075	PF00543	Nitrogen regulatory protein P-II
DM55_RS04080	PF00909	Ammonium Transporter Family
DM55_RS04090	PF08886	Glutamate-cysteine ligase
DM55_RS04095	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
DM55_RS04095	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
DM55_RS04100	PF03610	PTS system fructose IIA component
DM55_RS04105	PF00381	PTS HPr component phosphorylation site
DM55_RS04110	PF00391	PEP-utilising enzyme, mobile domain
DM55_RS04110	PF02896	PEP-utilising enzyme, TIM barrel domain
DM55_RS04110	PF05524	PEP-utilising enzyme, N-terminal
DM55_RS04115	PF00899	ThiF family
DM55_RS04120	PF03572	Peptidase family S41
DM55_RS04120	PF13180	PDZ domain
DM55_RS04125	PF00300	Histidine phosphatase superfamily (branch 1)
DM55_RS04130	PF00581	Rhodanese-like domain
DM55_RS04135	PF00462	Glutaredoxin
DM55_RS04140	PF02556	Preprotein translocase subunit SecB
DM55_RS04145	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
DM55_RS04145	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
DM55_RS04150	PF01661	Macro domain
DM55_RS04155	PF00588	SpoU rRNA Methylase family
DM55_RS04165	PF08241	Methyltransferase domain
DM55_RS04170	PF10003	DM55_RS04170
DM55_RS04175	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
DM55_RS04175	PF00691	OmpA family
DM55_RS04175	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
DM55_RS04175	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
DM55_RS04180	PF00115	Cytochrome C and Quinol oxidase polypeptide I
DM55_RS04190	PF04442	Cytochrome c oxidase assembly protein CtaG/Cox11
DM55_RS04195	PF11174	DM55_RS04195
DM55_RS04200	PF00510	Cytochrome c oxidase subunit III
DM55_RS04205	PF11137	DM55_RS04205
DM55_RS04210	PF02104	DM55_RS04210
DM55_RS04220	PF02628	DM55_RS04220
DM55_RS04225	PF01040	UbiA prenyltransferase family
DM55_RS04230	PF02630	SCO1/SenC
DM55_RS04235	PF03795	YCII-related domain
DM55_RS04240	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS04240	PF17200	DM55_RS04240
DM55_RS04245	PF03180	NLPA lipoprotein
DM55_RS04250	PF05598	DM55_RS04250
DM55_RS04250	PF13751	DM55_RS04250
DM55_RS04255	PF00012	Hsp70 protein
DM55_RS04260	PF00881	Nitroreductase family
DM55_RS04265	PF07690	Major Facilitator Superfamily
DM55_RS04270	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS04275	PF07209	DM55_RS04275
DM55_RS04280	PF13679	DM55_RS04280
DM55_RS04285	PF05175	Methyltransferase small domain
DM55_RS04290	PF01757	DM55_RS04290
DM55_RS04295	PF03168	Late embryogenesis abundant protein
DM55_RS04300	PF01433	Peptidase family M1
DM55_RS04315	PF13437	HlyD family secretion protein
DM55_RS04315	PF13533	Biotin-lipoyl like
DM55_RS04320	PF00005	ABC transporter
DM55_RS04320	PF00664	ABC transporter transmembrane region
DM55_RS04320	PF03412	Peptidase C39 family
DM55_RS04325	PF02321	Outer membrane efflux protein
DM55_RS04335	PF13539	D-alanyl-D-alanine carboxypeptidase
DM55_RS04345	PF06744	DM55_RS04345
DM55_RS04345	PF06761	DM55_RS04345
DM55_RS04345	PF14331	DM55_RS04345
DM55_RS04350	PF09867	Uncharacterized protein conserved in bacteria (DUF2094)
DM55_RS04355	PF00691	OmpA family
DM55_RS04360	PF06812	DM55_RS04360
DM55_RS04370	PF06996	DM55_RS04370
DM55_RS04375	PF05947	DM55_RS04375
DM55_RS04380	PF04965	Gene 25-like lysozyme
DM55_RS04385	PF00665	Integrase core domain
DM55_RS04385	PF13276	DM55_RS04385
DM55_RS04390	PF01527	Transposase
DM55_RS04395	PF03060	Nitronate monooxygenase
DM55_RS04400	PF01738	Dienelactone hydrolase family
DM55_RS04405	PF01425	Amidase
DM55_RS04410	PF02219	Methylenetetrahydrofolate reductase
DM55_RS04415	PF04020	DM55_RS04415
DM55_RS04420	PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
DM55_RS04420	PF05221	S-adenosyl-L-homocysteine hydrolase
DM55_RS04425	PF04539	Sigma-70 region 3
DM55_RS04425	PF04542	Sigma-70 region 2
DM55_RS04425	PF04545	Sigma-70, region 4
DM55_RS04430	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
DM55_RS04440	PF00771	FHIPEP family
DM55_RS04445	PF01312	FlhB HrpN YscU SpaS Family
DM55_RS04450	PF06983	3-demethylubiquinone-9 3-methyltransferase
DM55_RS04455	PF11925	DM55_RS04455
DM55_RS04460	PF11005	DM55_RS04460
DM55_RS04465	PF04344	Chemotaxis phosphatase, CheZ
DM55_RS04470	PF00072	Response regulator receiver domain
DM55_RS04475	PF00072	Response regulator receiver domain
DM55_RS04475	PF01339	CheB methylesterase
DM55_RS04480	PF03975	CheD chemotactic sensory transduction
DM55_RS04485	PF01739	CheR methyltransferase, SAM binding domain
DM55_RS04485	PF03705	CheR methyltransferase, all-alpha domain
DM55_RS04490	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS04490	PF00672	HAMP domain
DM55_RS04490	PF02203	Tar ligand binding domain homologue
DM55_RS04495	PF01584	CheW-like domain
DM55_RS04505	PF00072	Response regulator receiver domain
DM55_RS04510	PF13677	DM55_RS04510
DM55_RS04515	PF01618	DM55_RS04515
DM55_RS04520	PF05280	Flagellar transcriptional activator (FlhC)
DM55_RS04525	PF05247	Flagellar transcriptional activator (FlhD)
DM55_RS04530	PF00534	Glycosyl transferases group 1
DM55_RS04530	PF13439	Glycosyltransferase Family 4
DM55_RS04535	PF00816	H-NS histone family
DM55_RS04540	PF00230	Major intrinsic protein
DM55_RS04545	PF08282	haloacid dehalogenase-like hydrolase
DM55_RS04550	PF01869	BadF/BadG/BcrA/BcrD ATPase family
DM55_RS04555	PF03352	Methyladenine glycosylase
DM55_RS04560	PF01165	Ribosomal protein S21
DM55_RS04565	PF00669	Bacterial flagellin N-terminal helical region
DM55_RS04565	PF00700	Bacterial flagellin C-terminal helical region
DM55_RS04565	PF12613	DM55_RS04565
DM55_RS04570	PF02465	DM55_RS04570
DM55_RS04570	PF07195	DM55_RS04570
DM55_RS04570	PF07196	Flagellin hook IN motif
DM55_RS04575	PF05400	Flagellar protein FliT
DM55_RS04580	PF13432	Tetratricopeptide repeat
DM55_RS04580	PF13844	Glycosyl transferase family 41
DM55_RS04585	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
DM55_RS04590	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
DM55_RS04590	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
DM55_RS04600	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
DM55_RS04600	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
DM55_RS04605	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS04610	PF00132	Bacterial transferase hexapeptide (six repeats)
DM55_RS04615	PF00355	Rieske [2Fe-2S] domain
DM55_RS04615	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
DM55_RS04620	PF13489	Methyltransferase domain
DM55_RS04630	PF01810	DM55_RS04630
DM55_RS04635	PF04185	Phosphoesterase family
DM55_RS04640	PF05643	Putative bacterial lipoprotein (DUF799)
DM55_RS04645	PF16068	DM55_RS04645
DM55_RS04650	PF03783	Curli production assembly/transport component CsgG
DM55_RS04660	PF00561	alpha/beta hydrolase fold
DM55_RS04665	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS04665	PF00672	HAMP domain
DM55_RS04665	PF02743	Cache domain
DM55_RS04675	PF01565	FAD binding domain
DM55_RS04675	PF08031	Berberine and berberine like
DM55_RS04680	PF03067	Chitin binding domain
DM55_RS04690	PF01527	Transposase
DM55_RS04705	PF13458	Periplasmic binding protein
DM55_RS04710	PF07690	Major Facilitator Superfamily
DM55_RS04715	PF13883	Pyridoxamine 5'-phosphate oxidase
DM55_RS04720	PF00816	H-NS histone family
DM55_RS04725	PF01545	Cation efflux family
DM55_RS04725	PF16916	DM55_RS04725
DM55_RS04730	PF01037	AsnC family
DM55_RS04730	PF13412	Winged helix-turn-helix DNA-binding
DM55_RS04740	PF00753	Metallo-beta-lactamase superfamily
DM55_RS04745	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
DM55_RS04750	PF05598	DM55_RS04750
DM55_RS04750	PF13751	DM55_RS04750
DM55_RS04755	PF00216	Bacterial DNA-binding protein
DM55_RS04760	PF01266	FAD dependent oxidoreductase
DM55_RS04760	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
DM55_RS04765	PF00999	Sodium/hydrogen exchanger family
DM55_RS04770	PF04107	Glutamate-cysteine ligase family 2(GCS2)
DM55_RS04775	PF12802	MarR family
DM55_RS04780	PF00117	Glutamine amidotransferase class-I
DM55_RS04785	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
DM55_RS04795	PF00856	SET domain
DM55_RS04800	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS04800	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS04800	PF08521	DM55_RS04800
DM55_RS04805	PF00072	Response regulator receiver domain
DM55_RS04805	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS04810	PF12512	DM55_RS04810
DM55_RS04815	PF01329	Pterin 4 alpha carbinolamine dehydratase
DM55_RS04820	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
DM55_RS04825	PF01037	AsnC family
DM55_RS04825	PF13404	AsnC-type helix-turn-helix domain
DM55_RS04830	PF01928	CYTH domain
DM55_RS04835	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS04835	PF03466	LysR substrate binding domain
DM55_RS04840	PF00171	Aldehyde dehydrogenase family
DM55_RS04845	PF00732	GMC oxidoreductase
DM55_RS04845	PF05199	GMC oxidoreductase
DM55_RS04850	PF00005	ABC transporter
DM55_RS04850	PF12399	Branched-chain amino acid ATP-binding cassette transporter
DM55_RS04855	PF00005	ABC transporter
DM55_RS04860	PF13458	Periplasmic binding protein
DM55_RS04865	PF02653	DM55_RS04865
DM55_RS04870	PF02653	DM55_RS04870
DM55_RS04880	PF13458	Periplasmic binding protein
DM55_RS04885	PF02653	DM55_RS04885
DM55_RS04890	PF00005	ABC transporter
DM55_RS04890	PF02653	DM55_RS04890
DM55_RS04890	PF12399	Branched-chain amino acid ATP-binding cassette transporter
DM55_RS04895	PF00005	ABC transporter
DM55_RS04900	PF01134	Glucose inhibited division protein A
DM55_RS04900	PF13932	GidA associated domain 3
DM55_RS04905	PF02527	rRNA small subunit methyltransferase G
DM55_RS04910	PF13614	AAA domain
DM55_RS04915	PF02195	ParB-like nuclease domain
DM55_RS04920	PF03600	Citrate transporter
DM55_RS04925	PF03899	DM55_RS04925
DM55_RS04930	PF00119	ATP synthase A chain
DM55_RS04935	PF00137	ATP synthase subunit C
DM55_RS04940	PF00430	ATP synthase B/B' CF(0)
DM55_RS04945	PF00213	ATP synthase delta (OSCP) subunit
DM55_RS04950	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
DM55_RS04950	PF00306	ATP synthase alpha/beta chain, C terminal domain
DM55_RS04950	PF02874	ATP synthase alpha/beta family, beta-barrel domain
DM55_RS04955	PF00231	ATP synthase
DM55_RS04960	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
DM55_RS04960	PF02874	ATP synthase alpha/beta family, beta-barrel domain
DM55_RS04965	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
DM55_RS04965	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
DM55_RS04970	PF00501	AMP-binding enzyme
DM55_RS04970	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS04975	PF13380	CoA binding domain
DM55_RS04980	PF00497	Bacterial extracellular solute-binding proteins, family 3
DM55_RS04985	PF01208	Uroporphyrinogen decarboxylase (URO-D)
DM55_RS04990	PF00270	DEAD/DEAH box helicase
DM55_RS04990	PF00271	Helicase conserved C-terminal domain
DM55_RS05000	PF00171	Aldehyde dehydrogenase family
DM55_RS05000	PF01619	Proline dehydrogenase
DM55_RS05000	PF14850	DNA-binding domain of Proline dehydrogenase
DM55_RS05005	PF13458	Periplasmic binding protein
DM55_RS05010	PF00501	AMP-binding enzyme
DM55_RS05010	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS05015	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS05015	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS05020	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS05025	PF00155	Aminotransferase class I and II
DM55_RS05030	PF00497	Bacterial extracellular solute-binding proteins, family 3
DM55_RS05045	PF02913	FAD linked oxidases, C-terminal domain
DM55_RS05050	PF03551	Transcriptional regulator PadR-like family
DM55_RS05055	PF13411	MerR HTH family regulatory protein
DM55_RS05060	PF00122	E1-E2 ATPase
DM55_RS05060	PF00702	haloacid dehalogenase-like hydrolase
DM55_RS05065	PF12773	DM55_RS05065
DM55_RS05075	PF05552	Conserved TM helix
DM55_RS05085	PF01757	DM55_RS05085
DM55_RS05095	PF13520	Amino acid permease
DM55_RS05100	PF05598	DM55_RS05100
DM55_RS05100	PF13751	DM55_RS05100
DM55_RS05115	PF01654	DM55_RS05115
DM55_RS05120	PF02322	DM55_RS05120
DM55_RS05125	PF08173	DM55_RS05125
DM55_RS05135	PF00728	Glycosyl hydrolase family 20, catalytic domain
DM55_RS05135	PF02838	Glycosyl hydrolase family 20, domain 2
DM55_RS05135	PF03173	Putative carbohydrate binding domain
DM55_RS05140	PF00367	phosphotransferase system, EIIB
DM55_RS05140	PF02378	Phosphotransferase system, EIIC
DM55_RS05145	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
DM55_RS05145	PF00381	PTS HPr component phosphorylation site
DM55_RS05145	PF00391	PEP-utilising enzyme, mobile domain
DM55_RS05145	PF02896	PEP-utilising enzyme, TIM barrel domain
DM55_RS05145	PF05524	PEP-utilising enzyme, N-terminal
DM55_RS05150	PF01380	SIS domain
DM55_RS05155	PF01979	Amidohydrolase family
DM55_RS05160	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS05160	PF07702	UTRA domain
DM55_RS05165	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS05165	PF03466	LysR substrate binding domain
DM55_RS05170	PF00501	AMP-binding enzyme
DM55_RS05170	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS05180	PF00550	Phosphopantetheine attachment site
DM55_RS05195	PF11583	P-aminobenzoate N-oxygenase AurF
DM55_RS05200	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
DM55_RS05205	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
DM55_RS05205	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
DM55_RS05210	PF00501	AMP-binding enzyme
DM55_RS05210	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS05220	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS05220	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS05220	PF12418	DM55_RS05220
DM55_RS05220	PF12806	DM55_RS05220
DM55_RS05225	PF00285	Citrate synthase
DM55_RS05230	PF13649	Methyltransferase domain
DM55_RS05235	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
DM55_RS05240	PF00005	ABC transporter
DM55_RS05245	PF12698	ABC-2 family transporter protein
DM55_RS05255	PF00202	Aminotransferase class-III
DM55_RS05260	PF00487	DM55_RS05260
DM55_RS05265	PF07690	Major Facilitator Superfamily
DM55_RS05275	PF02811	PHP domain
DM55_RS05275	PF07733	Bacterial DNA polymerase III alpha subunit
DM55_RS05275	PF14579	Helix-hairpin-helix motif
DM55_RS05280	PF00817	impB/mucB/samB family
DM55_RS05290	PF00005	ABC transporter
DM55_RS05295	PF02653	DM55_RS05295
DM55_RS05300	PF04392	ABC transporter substrate binding protein
DM55_RS05305	PF05598	DM55_RS05305
DM55_RS05305	PF13751	DM55_RS05305
DM55_RS05310	PF00140	Sigma-70 factor, region 1
DM55_RS05310	PF04542	Sigma-70 region 2
DM55_RS05310	PF04545	Sigma-70, region 4
DM55_RS05315	PF09411	Lipid A 3-O-deacylase (PagL)
DM55_RS05320	PF14534	Domain of unknown function (DUF4440)
DM55_RS05325	PF00682	HMGL-like
DM55_RS05330	PF00583	Acetyltransferase (GNAT) family
DM55_RS05335	PF02885	Glycosyl transferase family, helical bundle domain
DM55_RS05340	PF00384	Molybdopterin oxidoreductase
DM55_RS05340	PF01568	Molydopterin dinucleotide binding domain
DM55_RS05340	PF04324	BFD-like [2Fe-2S] binding domain
DM55_RS05340	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
DM55_RS05345	PF00355	Rieske [2Fe-2S] domain
DM55_RS05350	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
DM55_RS05350	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
DM55_RS05350	PF04324	BFD-like [2Fe-2S] binding domain
DM55_RS05350	PF07992	Pyridine nucleotide-disulphide oxidoreductase
DM55_RS05360	PF13417	Glutathione S-transferase, N-terminal domain
DM55_RS05365	PF00448	SRP54-type protein, GTPase domain
DM55_RS05365	PF02881	SRP54-type protein, helical bundle domain
DM55_RS05370	PF03602	Conserved hypothetical protein 95
DM55_RS05375	PF01467	Cytidylyltransferase
DM55_RS05380	PF12838	4Fe-4S dicluster domain
DM55_RS05385	PF00155	Aminotransferase class I and II
DM55_RS05390	PF01195	Peptidyl-tRNA hydrolase
DM55_RS05395	PF01386	Ribosomal L25p family
DM55_RS05395	PF14693	Ribosomal protein TL5, C-terminal domain
DM55_RS05400	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
DM55_RS05400	PF14572	Phosphoribosyl synthetase-associated domain
DM55_RS05410	PF00288	GHMP kinases N terminal domain
DM55_RS05410	PF08544	GHMP kinases C terminal
DM55_RS05415	PF03550	Outer membrane lipoprotein LolB
DM55_RS05420	PF13432	Tetratricopeptide repeat
DM55_RS05420	PF14559	Tetratricopeptide repeat
DM55_RS05425	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
DM55_RS05425	PF06827	Zinc finger found in FPG and IleRS
DM55_RS05425	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
DM55_RS05430	PF00633	Helix-hairpin-helix motif
DM55_RS05430	PF00730	HhH-GPD superfamily base excision DNA repair protein
DM55_RS05430	PF14815	NUDIX domain
DM55_RS05435	PF02190	ATP-dependent protease La (LON) domain
DM55_RS05440	PF03668	DM55_RS05440
DM55_RS05445	PF02603	HPr Serine kinase N terminus
DM55_RS05445	PF07475	HPr Serine kinase C-terminal domain
DM55_RS05450	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
DM55_RS05455	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
DM55_RS05460	PF00309	DM55_RS05460
DM55_RS05460	PF04552	Sigma-54, DNA binding domain
DM55_RS05460	PF04963	Sigma-54 factor, core binding domain
DM55_RS05465	PF00005	ABC transporter
DM55_RS05465	PF12399	Branched-chain amino acid ATP-binding cassette transporter
DM55_RS05470	PF03968	OstA-like protein
DM55_RS05475	PF06835	Lipopolysaccharide-assembly, LptC-related
DM55_RS05485	PF00571	CBS domain
DM55_RS05485	PF01380	SIS domain
DM55_RS05490	PF00999	Sodium/hydrogen exchanger family
DM55_RS05490	PF02080	TrkA-C domain
DM55_RS05490	PF02254	TrkA-N domain
DM55_RS05495	PF00156	Phosphoribosyl transferase domain
DM55_RS05500	PF01810	DM55_RS05500
DM55_RS05505	PF00293	NUDIX domain
DM55_RS05505	PF15916	DM55_RS05505
DM55_RS05510	PF00551	Formyl transferase
DM55_RS05525	PF07690	Major Facilitator Superfamily
DM55_RS05530	PF00436	Single-strand binding protein family
DM55_RS05535	PF01527	Transposase
DM55_RS05540	PF13276	DM55_RS05540
DM55_RS05540	PF13683	DM55_RS05540
DM55_RS05545	PF00324	Amino acid permease
DM55_RS05555	PF00034	Cytochrome c
DM55_RS05560	PF04972	BON domain
DM55_RS05565	PF13580	SIS domain
DM55_RS05570	PF02021	Uncharacterised protein family UPF0102
DM55_RS05575	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
DM55_RS05585	PF13751	DM55_RS05585
DM55_RS05590	PF06751	Ethanolamine ammonia lyase large subunit (EutB)
DM55_RS05595	PF05985	Ethanolamine ammonia-lyase light chain (EutC)
DM55_RS05605	PF00171	Aldehyde dehydrogenase family
DM55_RS05610	PF12833	Helix-turn-helix domain
DM55_RS05620	PF00205	Thiamine pyrophosphate enzyme, central domain
DM55_RS05620	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
DM55_RS05620	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
DM55_RS05630	PF03313	DM55_RS05630
DM55_RS05630	PF03315	Serine dehydratase beta chain
DM55_RS05635	PF05426	Alginate lyase
DM55_RS05640	PF02347	Glycine cleavage system P-protein
DM55_RS05645	PF01597	Glycine cleavage H-protein
DM55_RS05650	PF01571	Aminomethyltransferase folate-binding domain
DM55_RS05650	PF08669	Glycine cleavage T-protein C-terminal barrel domain
DM55_RS05660	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
DM55_RS05660	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
DM55_RS05665	PF13472	GDSL-like Lipase/Acylhydrolase family
DM55_RS05675	PF00580	UvrD/REP helicase N-terminal domain
DM55_RS05675	PF13361	UvrD-like helicase C-terminal domain
DM55_RS05680	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
DM55_RS05690	PF00589	Phage integrase family
DM55_RS05700	PF01527	Transposase
DM55_RS05705	PF00313	'Cold-shock' DNA-binding domain
DM55_RS05710	PF05598	DM55_RS05710
DM55_RS05710	PF13751	DM55_RS05710
DM55_RS05715	PF02492	CobW/HypB/UreG, nucleotide-binding domain
DM55_RS05715	PF07683	Cobalamin synthesis protein cobW C-terminal domain
DM55_RS05720	PF01464	Transglycosylase SLT domain
DM55_RS05725	PF00263	DM55_RS05725
DM55_RS05725	PF03958	Bacterial type II/III secretion system short domain
DM55_RS05730	PF00437	Type II/IV secretion system protein
DM55_RS05730	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
DM55_RS05735	PF00482	Type II secretion system (T2SS), protein F
DM55_RS05745	PF08334	Type II secretion system (T2SS), protein G
DM55_RS05745	PF13633	Prokaryotic N-terminal methylation site
DM55_RS05750	PF12019	Type II transport protein GspH
DM55_RS05750	PF13544	DM55_RS05750
DM55_RS05755	PF02501	Type II secretion system (T2SS), protein I
DM55_RS05755	PF13633	Prokaryotic N-terminal methylation site
DM55_RS05760	PF13633	Prokaryotic N-terminal methylation site
DM55_RS05765	PF03934	Type II secretion system (T2SS), protein K
DM55_RS05770	PF05134	Type II secretion system (T2SS), protein L
DM55_RS05770	PF12693	GspL periplasmic domain
DM55_RS05775	PF04612	Type II secretion system (T2SS), protein M
DM55_RS05780	PF01203	DM55_RS05780
DM55_RS05785	PF02321	Outer membrane efflux protein
DM55_RS05795	PF01047	MarR family
DM55_RS05805	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS05805	PF03466	LysR substrate binding domain
DM55_RS05810	PF03788	DM55_RS05810
DM55_RS05815	PF04172	DM55_RS05815
DM55_RS05825	PF03748	DM55_RS05825
DM55_RS05830	PF01052	Surface presentation of antigens (SPOA)
DM55_RS05830	PF02154	Flagellar motor switch protein FliM
DM55_RS05835	PF01052	Surface presentation of antigens (SPOA)
DM55_RS05840	PF04347	DM55_RS05840
DM55_RS05850	PF01527	Transposase
DM55_RS05855	PF13276	DM55_RS05855
DM55_RS05855	PF13683	DM55_RS05855
DM55_RS05875	PF02515	CoA-transferase family III
DM55_RS05880	PF00378	Enoyl-CoA hydratase/isomerase family
DM55_RS05880	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
DM55_RS05880	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
DM55_RS05885	PF00108	Thiolase, N-terminal domain
DM55_RS05885	PF02803	Thiolase, C-terminal domain
DM55_RS05890	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS05890	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS05890	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS05900	PF07848	PaaX-like protein
DM55_RS05900	PF08223	PaaX-like protein C-terminal domain
DM55_RS05905	PF00487	DM55_RS05905
DM55_RS05910	PF08006	DM55_RS05910
DM55_RS05915	PF03551	Transcriptional regulator PadR-like family
DM55_RS05920	PF00732	GMC oxidoreductase
DM55_RS05920	PF05199	GMC oxidoreductase
DM55_RS05925	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS05930	PF10703	Molybdenum cofactor biosynthesis protein F
DM55_RS05935	PF12680	SnoaL-like domain
DM55_RS05940	PF00171	Aldehyde dehydrogenase family
DM55_RS05945	PF13458	Periplasmic binding protein
DM55_RS05950	PF02653	DM55_RS05950
DM55_RS05955	PF02653	DM55_RS05955
DM55_RS05960	PF00005	ABC transporter
DM55_RS05965	PF00005	ABC transporter
DM55_RS05970	PF12833	Helix-turn-helix domain
DM55_RS05970	PF14525	DM55_RS05970
DM55_RS05975	PF13609	Gram-negative porin
DM55_RS05985	PF04851	Type III restriction enzyme, res subunit
DM55_RS05990	PF01555	DNA methylase
DM55_RS05995	PF13609	Gram-negative porin
DM55_RS06000	PF00072	Response regulator receiver domain
DM55_RS06000	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS06005	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS06005	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS06005	PF08521	DM55_RS06005
DM55_RS06010	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS06015	PF00005	ABC transporter
DM55_RS06020	PF09084	NMT1/THI5 like
DM55_RS06025	PF11158	DM55_RS06025
DM55_RS06030	PF13649	Methyltransferase domain
DM55_RS06035	PF13411	MerR HTH family regulatory protein
DM55_RS06040	PF01311	DM55_RS06040
DM55_RS06045	PF01313	DM55_RS06045
DM55_RS06050	PF00813	DM55_RS06050
DM55_RS06055	PF13276	DM55_RS06055
DM55_RS06055	PF13683	DM55_RS06055
DM55_RS06060	PF01527	Transposase
DM55_RS06065	PF03237	Terminase-like family
DM55_RS06075	PF04386	Stringent starvation protein B
DM55_RS06080	PF00043	Glutathione S-transferase, C-terminal domain
DM55_RS06080	PF13417	Glutathione S-transferase, N-terminal domain
DM55_RS06085	PF02167	Cytochrome C1 family
DM55_RS06090	PF00032	Cytochrome b(C-terminal)/b6/petD
DM55_RS06090	PF00033	Cytochrome b(N-terminal)/b6/petB
DM55_RS06095	PF00355	Rieske [2Fe-2S] domain
DM55_RS06095	PF10399	Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
DM55_RS06100	PF01784	NIF3 (NGG1p interacting factor 3)
DM55_RS06105	PF13180	PDZ domain
DM55_RS06105	PF13365	Trypsin-like peptidase domain
DM55_RS06115	PF00902	Sec-independent protein translocase protein (TatC)
DM55_RS06120	PF02416	mttA/Hcf106 family
DM55_RS06125	PF02416	mttA/Hcf106 family
DM55_RS06130	PF01230	HIT domain
DM55_RS06140	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
DM55_RS06145	PF01502	Phosphoribosyl-AMP cyclohydrolase
DM55_RS06150	PF00977	Histidine biosynthesis protein
DM55_RS06155	PF00977	Histidine biosynthesis protein
DM55_RS06160	PF00117	Glutamine amidotransferase class-I
DM55_RS06165	PF01914	DM55_RS06165
DM55_RS06170	PF00475	Imidazoleglycerol-phosphate dehydratase
DM55_RS06175	PF00155	Aminotransferase class I and II
DM55_RS06180	PF00815	Histidinol dehydrogenase
DM55_RS06185	PF01634	ATP phosphoribosyltransferase
DM55_RS06190	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
DM55_RS06195	PF01722	BolA-like protein
DM55_RS06200	PF01061	DM55_RS06200
DM55_RS06205	PF00005	ABC transporter
DM55_RS06210	PF13466	STAS domain
DM55_RS06215	PF05494	Toluene tolerance, Ttg2
DM55_RS06220	PF04333	DM55_RS06220
DM55_RS06225	PF02470	DM55_RS06225
DM55_RS06230	PF02405	DM55_RS06230
DM55_RS06235	PF00005	ABC transporter
DM55_RS06240	PF02581	Thiamine monophosphate synthase/TENI
DM55_RS06245	PF05690	Thiazole biosynthesis protein ThiG
DM55_RS06250	PF02597	ThiS family
DM55_RS06255	PF01266	FAD dependent oxidoreductase
DM55_RS06260	PF00005	ABC transporter
DM55_RS06260	PF06472	DM55_RS06260
DM55_RS06265	PF13563	2'-5' RNA ligase superfamily
DM55_RS06270	PF01235	DM55_RS06270
DM55_RS06275	PF07992	Pyridine nucleotide-disulphide oxidoreductase
DM55_RS06275	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
DM55_RS06280	PF00310	Glutamine amidotransferases class-II
DM55_RS06280	PF01493	GXGXG motif
DM55_RS06280	PF01645	Conserved region in glutamate synthase
DM55_RS06280	PF04898	Glutamate synthase central domain
DM55_RS06285	PF01797	Transposase IS200 like
DM55_RS06290	PF03922	OmpW family
DM55_RS06295	PF03009	Glycerophosphoryl diester phosphodiesterase family
DM55_RS06300	PF00005	ABC transporter
DM55_RS06300	PF08402	TOBE domain
DM55_RS06305	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS06310	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS06315	PF13416	Bacterial extracellular solute-binding protein
DM55_RS06320	PF01966	HD domain
DM55_RS06320	PF13286	Phosphohydrolase-associated domain
DM55_RS06325	PF01761	3-dehydroquinate synthase
DM55_RS06330	PF01202	Shikimate kinase
DM55_RS06335	PF00263	DM55_RS06335
DM55_RS06335	PF03958	Bacterial type II/III secretion system short domain
DM55_RS06335	PF07660	Secretin and TonB N terminus short domain
DM55_RS06350	PF11104	Type IV pilus assembly protein PilM;
DM55_RS06355	PF00905	Penicillin binding protein transpeptidase domain
DM55_RS06355	PF00912	Transglycosylase
DM55_RS06355	PF17092	DM55_RS06355
DM55_RS06365	PF01491	Frataxin-like domain
DM55_RS06370	PF13627	DM55_RS06370
DM55_RS06375	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
DM55_RS06375	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
DM55_RS06380	PF01794	DM55_RS06380
DM55_RS06385	PF00174	Oxidoreductase molybdopterin binding domain
DM55_RS06390	PF13276	DM55_RS06390
DM55_RS06390	PF13683	DM55_RS06390
DM55_RS06395	PF01527	Transposase
DM55_RS06415	PF00009	Elongation factor Tu GTP binding domain
DM55_RS06415	PF03143	Elongation factor Tu C-terminal domain
DM55_RS06415	PF03144	Elongation factor Tu domain 2
DM55_RS06425	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
DM55_RS06430	PF00467	KOW motif
DM55_RS06430	PF02357	Transcription termination factor nusG
DM55_RS06435	PF00298	Ribosomal protein L11, RNA binding domain
DM55_RS06435	PF03946	Ribosomal protein L11, N-terminal domain
DM55_RS06440	PF00687	Ribosomal protein L1p/L10e family
DM55_RS06445	PF00466	Ribosomal protein L10
DM55_RS06450	PF00542	Ribosomal protein L7/L12 C-terminal domain
DM55_RS06450	PF16320	DM55_RS06450
DM55_RS06455	PF00562	RNA polymerase Rpb2, domain 6
DM55_RS06455	PF04560	RNA polymerase Rpb2, domain 7
DM55_RS06455	PF04561	RNA polymerase Rpb2, domain 2
DM55_RS06455	PF04563	RNA polymerase beta subunit
DM55_RS06455	PF04565	RNA polymerase Rpb2, domain 3
DM55_RS06455	PF10385	RNA polymerase beta subunit external 1 domain
DM55_RS06460	PF00623	RNA polymerase Rpb1, domain 2
DM55_RS06460	PF04983	RNA polymerase Rpb1, domain 3
DM55_RS06460	PF04997	RNA polymerase Rpb1, domain 1
DM55_RS06460	PF04998	RNA polymerase Rpb1, domain 5
DM55_RS06460	PF05000	RNA polymerase Rpb1, domain 4
DM55_RS06470	PF00270	DEAD/DEAH box helicase
DM55_RS06470	PF00271	Helicase conserved C-terminal domain
DM55_RS06470	PF00570	HRDC domain
DM55_RS06470	PF09382	RQC domain
DM55_RS06470	PF16124	DM55_RS06470
DM55_RS06475	PF00164	Ribosomal protein S12/S23
DM55_RS06480	PF00177	Ribosomal protein S7p/S5e
DM55_RS06485	PF00009	Elongation factor Tu GTP binding domain
DM55_RS06485	PF00679	Elongation factor G C-terminus
DM55_RS06485	PF03144	Elongation factor Tu domain 2
DM55_RS06485	PF03764	Elongation factor G, domain IV
DM55_RS06485	PF14492	Elongation Factor G, domain II
DM55_RS06490	PF00009	Elongation factor Tu GTP binding domain
DM55_RS06490	PF03143	Elongation factor Tu C-terminal domain
DM55_RS06490	PF03144	Elongation factor Tu domain 2
DM55_RS06495	PF00338	Ribosomal protein S10p/S20e
DM55_RS06500	PF00297	Ribosomal protein L3
DM55_RS06505	PF00573	Ribosomal protein L4/L1 family
DM55_RS06510	PF00276	Ribosomal protein L23
DM55_RS06515	PF00181	Ribosomal Proteins L2, RNA binding domain
DM55_RS06515	PF03947	Ribosomal Proteins L2, C-terminal domain
DM55_RS06520	PF00203	Ribosomal protein S19
DM55_RS06525	PF00237	Ribosomal protein L22p/L17e
DM55_RS06530	PF00189	Ribosomal protein S3, C-terminal domain
DM55_RS06530	PF07650	KH domain
DM55_RS06535	PF00252	Ribosomal protein L16p/L10e
DM55_RS06540	PF00831	Ribosomal L29 protein
DM55_RS06545	PF00366	Ribosomal protein S17
DM55_RS06550	PF00238	Ribosomal protein L14p/L23e
DM55_RS06555	PF17136	DM55_RS06555
DM55_RS06560	PF00281	Ribosomal protein L5
DM55_RS06560	PF00673	ribosomal L5P family C-terminus
DM55_RS06565	PF00253	Ribosomal protein S14p/S29e
DM55_RS06570	PF00410	Ribosomal protein S8
DM55_RS06575	PF00347	Ribosomal protein L6
DM55_RS06580	PF00861	Ribosomal L18p/L5e family
DM55_RS06585	PF00333	Ribosomal protein S5, N-terminal domain
DM55_RS06585	PF03719	Ribosomal protein S5, C-terminal domain
DM55_RS06590	PF00327	Ribosomal protein L30p/L7e
DM55_RS06595	PF00828	Ribosomal protein L18e/L15
DM55_RS06600	PF00344	SecY translocase
DM55_RS06605	PF01176	Translation initiation factor 1A / IF-1
DM55_RS06610	PF00444	Ribosomal protein L36
DM55_RS06615	PF00416	Ribosomal protein S13/S18
DM55_RS06620	PF00411	Ribosomal protein S11
DM55_RS06625	PF00163	Ribosomal protein S4/S9 N-terminal domain
DM55_RS06625	PF01479	S4 domain
DM55_RS06630	PF01000	RNA polymerase Rpb3/RpoA insert domain
DM55_RS06630	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
DM55_RS06630	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
DM55_RS06635	PF01196	Ribosomal protein L17
DM55_RS06640	PF03091	CutA1 divalent ion tolerance protein
DM55_RS06645	PF02683	DM55_RS06645
DM55_RS06645	PF11412	Disulphide bond corrector protein DsbC
DM55_RS06645	PF13899	Thioredoxin-like
DM55_RS06650	PF00490	Delta-aminolevulinic acid dehydratase
DM55_RS06655	PF01926	50S ribosome-binding GTPase
DM55_RS06660	PF00034	Cytochrome c
DM55_RS06660	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
DM55_RS06665	PF05140	DM55_RS06665
DM55_RS06670	PF01578	DM55_RS06670
DM55_RS06675	PF01527	Transposase
DM55_RS06680	PF13276	DM55_RS06680
DM55_RS06680	PF13683	DM55_RS06680
DM55_RS06690	PF03922	OmpW family
DM55_RS06695	PF11170	DM55_RS06695
DM55_RS06700	PF11170	DM55_RS06700
DM55_RS06705	PF01118	Semialdehyde dehydrogenase, NAD binding domain
DM55_RS06710	PF03358	NADPH-dependent FMN reductase
DM55_RS06715	PF01161	Phosphatidylethanolamine-binding protein
DM55_RS06720	PF00156	Phosphoribosyl transferase domain
DM55_RS06725	PF00390	Malic enzyme, N-terminal domain
DM55_RS06725	PF01515	Phosphate acetyl/butaryl transferase
DM55_RS06725	PF03949	Malic enzyme, NAD binding domain
DM55_RS06730	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
DM55_RS06730	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
DM55_RS06750	PF01527	Transposase
DM55_RS06780	PF13472	GDSL-like Lipase/Acylhydrolase family
DM55_RS06785	PF05138	Phenylacetic acid catabolic protein
DM55_RS06790	PF06243	Phenylacetic acid degradation B
DM55_RS06795	PF05138	Phenylacetic acid catabolic protein
DM55_RS06800	PF01883	Domain of unknown function DUF59
DM55_RS06805	PF00111	2Fe-2S iron-sulfur cluster binding domain
DM55_RS06805	PF00175	Oxidoreductase NAD-binding domain
DM55_RS06805	PF00970	Oxidoreductase FAD-binding domain
DM55_RS06810	PF08874	DM55_RS06810
DM55_RS06810	PF12395	DM55_RS06810
DM55_RS06815	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS06820	PF00583	Acetyltransferase (GNAT) family
DM55_RS06825	PF01037	AsnC family
DM55_RS06825	PF13412	Winged helix-turn-helix DNA-binding
DM55_RS06830	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
DM55_RS06830	PF14696	Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
DM55_RS06835	PF01609	Transposase DDE domain
DM55_RS06835	PF05598	DM55_RS06835
DM55_RS06840	PF00042	Globin
DM55_RS06840	PF00175	Oxidoreductase NAD-binding domain
DM55_RS06845	PF01923	Cobalamin adenosyltransferase
DM55_RS06850	PF01565	FAD binding domain
DM55_RS06850	PF02913	FAD linked oxidases, C-terminal domain
DM55_RS06855	PF01565	FAD binding domain
DM55_RS06855	PF02913	FAD linked oxidases, C-terminal domain
DM55_RS06860	PF01565	FAD binding domain
DM55_RS06865	PF02754	DM55_RS06865
DM55_RS06865	PF13183	4Fe-4S dicluster domain
DM55_RS06870	PF01168	Alanine racemase, N-terminal domain
DM55_RS06875	PF03807	NADP oxidoreductase coenzyme F420-dependent
DM55_RS06875	PF14748	Pyrroline-5-carboxylate reductase dimerisation
DM55_RS06880	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS06890	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
DM55_RS06895	PF00005	ABC transporter
DM55_RS06905	PF00005	ABC transporter
DM55_RS06910	PF00005	ABC transporter
DM55_RS06915	PF06007	DM55_RS06915
DM55_RS06920	PF05861	DM55_RS06920
DM55_RS06925	PF05845	Bacterial phosphonate metabolism protein (PhnH)
DM55_RS06930	PF06754	DM55_RS06930
DM55_RS06935	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS06935	PF07702	UTRA domain
DM55_RS06940	PF06299	DM55_RS06940
DM55_RS06945	PF13238	AAA domain
DM55_RS06950	PF01040	UbiA prenyltransferase family
DM55_RS06955	PF01638	HxlR-like helix-turn-helix
DM55_RS06965	PF00210	Ferritin-like domain
DM55_RS06975	PF00141	Peroxidase
DM55_RS06980	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS06980	PF03466	LysR substrate binding domain
DM55_RS06985	PF00270	DEAD/DEAH box helicase
DM55_RS06985	PF00271	Helicase conserved C-terminal domain
DM55_RS06985	PF17191	DM55_RS06985
DM55_RS06990	PF02547	Queuosine biosynthesis protein
DM55_RS06995	PF01702	Queuine tRNA-ribosyltransferase
DM55_RS07000	PF02699	Preprotein translocase subunit
DM55_RS07005	PF02355	Protein export membrane protein
DM55_RS07005	PF07549	SecD/SecF GG Motif
DM55_RS07005	PF13721	SecD export protein N-terminal TM region
DM55_RS07010	PF02355	Protein export membrane protein
DM55_RS07010	PF07549	SecD/SecF GG Motif
DM55_RS07015	PF07690	Major Facilitator Superfamily
DM55_RS07020	PF04264	YceI-like domain
DM55_RS07025	PF04264	YceI-like domain
DM55_RS07030	PF01292	Prokaryotic cytochrome b561
DM55_RS07035	PF04403	DM55_RS07035
DM55_RS07040	PF04403	DM55_RS07040
DM55_RS07045	PF02470	DM55_RS07045
DM55_RS07050	PF03886	Protein of unknown function (DUF330)
DM55_RS07055	PF10136	DM55_RS07055
DM55_RS07060	PF01170	Putative RNA methylase family UPF0020
DM55_RS07060	PF02926	THUMP domain
DM55_RS07085	PF08279	HTH domain
DM55_RS07085	PF13280	DM55_RS07085
DM55_RS07090	PF02233	NAD(P) transhydrogenase beta subunit
DM55_RS07095	PF12769	Domain of unknown function (DUF3814)
DM55_RS07100	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
DM55_RS07100	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
DM55_RS07105	PF00293	NUDIX domain
DM55_RS07110	PF03054	tRNA methyl transferase
DM55_RS07115	PF01645	Conserved region in glutamate synthase
DM55_RS07120	PF13410	Glutathione S-transferase, C-terminal domain
DM55_RS07120	PF13417	Glutathione S-transferase, N-terminal domain
DM55_RS07125	PF00557	Metallopeptidase family M24
DM55_RS07125	PF05195	Aminopeptidase P, N-terminal domain
DM55_RS07130	PF01494	FAD binding domain
DM55_RS07135	PF01207	Dihydrouridine synthase (Dus)
DM55_RS07140	PF02954	Bacterial regulatory protein, Fis family
DM55_RS07145	PF01808	AICARFT/IMPCHase bienzyme
DM55_RS07145	PF02142	MGS-like domain
DM55_RS07155	PF02075	Crossover junction endodeoxyribonuclease RuvC
DM55_RS07160	PF01330	RuvA N terminal domain
DM55_RS07160	PF07499	RuvA, C-terminal domain
DM55_RS07160	PF14520	Helix-hairpin-helix domain
DM55_RS07165	PF05491	Holliday junction DNA helicase ruvB C-terminus
DM55_RS07165	PF05496	Holliday junction DNA helicase ruvB N-terminus
DM55_RS07170	PF09995	DM55_RS07170
DM55_RS07175	PF08857	Putative ParB-like nuclease
DM55_RS07180	PF00300	Histidine phosphatase superfamily (branch 1)
DM55_RS07185	PF02580	D-Tyr-tRNA(Tyr) deacylase
DM55_RS07190	PF00579	tRNA synthetases class I (W and Y)
DM55_RS07190	PF01479	S4 domain
DM55_RS07195	PF03702	Uncharacterised protein family (UPF0075)
DM55_RS07200	PF00043	Glutathione S-transferase, C-terminal domain
DM55_RS07200	PF02798	Glutathione S-transferase, N-terminal domain
DM55_RS07205	PF00043	Glutathione S-transferase, C-terminal domain
DM55_RS07205	PF02798	Glutathione S-transferase, N-terminal domain
DM55_RS07210	PF12833	Helix-turn-helix domain
DM55_RS07210	PF12852	Cupin
DM55_RS07215	PF01521	Iron-sulphur cluster biosynthesis
DM55_RS07220	PF00380	Ribosomal protein S9/S16
DM55_RS07225	PF00572	Ribosomal protein L13
DM55_RS07230	PF05598	DM55_RS07230
DM55_RS07230	PF13751	DM55_RS07230
DM55_RS07235	PF00793	DAHP synthetase I family
DM55_RS07240	PF01523	Putative modulator of DNA gyrase
DM55_RS07245	PF00795	Carbon-nitrogen hydrolase
DM55_RS07250	PF13116	DM55_RS07250
DM55_RS07250	PF13502	DM55_RS07250
DM55_RS07255	PF03710	Glutamate-ammonia ligase adenylyltransferase
DM55_RS07255	PF08335	GlnD PII-uridylyltransferase
DM55_RS07260	PF02463	RecF/RecN/SMC N terminal domain
DM55_RS07265	PF01513	ATP-NAD kinase
DM55_RS07270	PF01628	HrcA protein C terminal domain
DM55_RS07270	PF03444	Winged helix-turn-helix transcription repressor, HrcA DNA-binding
DM55_RS07275	PF00762	Ferrochelatase
DM55_RS07280	PF01479	S4 domain
DM55_RS07285	PF01025	GrpE
DM55_RS07295	PF00012	Hsp70 protein
DM55_RS07300	PF00226	DnaJ domain
DM55_RS07300	PF00684	DnaJ central domain
DM55_RS07300	PF01556	DnaJ C terminal domain
DM55_RS07305	PF00425	chorismate binding enzyme
DM55_RS07305	PF01063	Aminotransferase class IV
DM55_RS07310	PF02548	Ketopantoate hydroxymethyltransferase
DM55_RS07315	PF01712	Deoxynucleoside kinase
DM55_RS07320	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
DM55_RS07325	PF01743	Poly A polymerase head domain
DM55_RS07325	PF12626	Polymerase A arginine-rich C-terminus
DM55_RS07325	PF12627	Probable RNA and SrmB- binding site of polymerase A
DM55_RS07330	PF12710	haloacid dehalogenase-like hydrolase
DM55_RS07335	PF00308	Bacterial dnaA  protein
DM55_RS07340	PF00586	AIR synthase related protein, N-terminal domain
DM55_RS07340	PF02769	AIR synthase related protein, C-terminal domain
DM55_RS07345	PF14534	Domain of unknown function (DUF4440)
DM55_RS07350	PF01715	IPP transferase
DM55_RS07355	PF01119	DNA mismatch repair protein, C-terminal domain
DM55_RS07355	PF08676	MutL C terminal dimerisation domain
DM55_RS07355	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS07360	PF09335	DM55_RS07360
DM55_RS07365	PF00924	Mechanosensitive ion channel
DM55_RS07370	PF13230	Glutamine amidotransferases class-II
DM55_RS07375	PF00483	Nucleotidyl transferase
DM55_RS07375	PF01050	Mannose-6-phosphate isomerase
DM55_RS07380	PF05159	DM55_RS07380
DM55_RS07385	PF00534	Glycosyl transferases group 1
DM55_RS07390	PF02563	Polysaccharide biosynthesis/export protein
DM55_RS07400	PF01061	DM55_RS07400
DM55_RS07405	PF00005	ABC transporter
DM55_RS07410	PF00534	Glycosyl transferases group 1
DM55_RS07415	PF03567	Sulfotransferase family
DM55_RS07425	PF00534	Glycosyl transferases group 1
DM55_RS07425	PF13946	DM55_RS07425
DM55_RS07435	PF04321	RmlD substrate binding domain
DM55_RS07440	PF16363	DM55_RS07440
DM55_RS07445	PF00288	GHMP kinases N terminal domain
DM55_RS07445	PF08544	GHMP kinases C terminal
DM55_RS07450	PF13580	SIS domain
DM55_RS07455	PF00483	Nucleotidyl transferase
DM55_RS07460	PF13242	HAD-hyrolase-like
DM55_RS07465	PF05159	DM55_RS07465
DM55_RS07470	PF00106	short chain dehydrogenase
DM55_RS07475	PF00884	Sulfatase
DM55_RS07480	PF00107	Zinc-binding dehydrogenase
DM55_RS07480	PF00109	Beta-ketoacyl synthase, N-terminal domain
DM55_RS07480	PF00550	Phosphopantetheine attachment site
DM55_RS07480	PF00698	Acyl transferase domain
DM55_RS07480	PF02801	Beta-ketoacyl synthase, C-terminal domain
DM55_RS07480	PF08659	KR domain
DM55_RS07480	PF13489	Methyltransferase domain
DM55_RS07480	PF14765	Polyketide synthase dehydratase
DM55_RS07480	PF16197	DM55_RS07480
DM55_RS07485	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
DM55_RS07490	PF00155	Aminotransferase class I and II
DM55_RS07495	PF00583	Acetyltransferase (GNAT) family
DM55_RS07505	PF01527	Transposase
DM55_RS07510	PF13276	DM55_RS07510
DM55_RS07510	PF13683	DM55_RS07510
DM55_RS07515	PF02643	Uncharacterized ACR, COG1430
DM55_RS07520	PF00009	Elongation factor Tu GTP binding domain
DM55_RS07520	PF00679	Elongation factor G C-terminus
DM55_RS07520	PF03144	Elongation factor Tu domain 2
DM55_RS07520	PF03764	Elongation factor G, domain IV
DM55_RS07520	PF14492	Elongation Factor G, domain II
DM55_RS07530	PF00248	Aldo/keto reductase family
DM55_RS07535	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS07535	PF07702	UTRA domain
DM55_RS07545	PF00285	Citrate synthase
DM55_RS07545	PF12728	Helix-turn-helix domain
DM55_RS07550	PF11142	DM55_RS07550
DM55_RS07555	PF07690	Major Facilitator Superfamily
DM55_RS07560	PF00563	EAL domain
DM55_RS07565	PF13649	Methyltransferase domain
DM55_RS07570	PF02558	Ketopantoate reductase PanE/ApbA
DM55_RS07570	PF08546	Ketopantoate reductase PanE/ApbA C terminal
DM55_RS07575	PF06127	DM55_RS07575
DM55_RS07580	PF00027	Cyclic nucleotide-binding domain
DM55_RS07580	PF13545	Crp-like helix-turn-helix domain
DM55_RS07585	PF02417	DM55_RS07585
DM55_RS07595	PF01527	Transposase
DM55_RS07600	PF07152	YaeQ protein
DM55_RS07605	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
DM55_RS07610	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
DM55_RS07610	PF02805	Metal binding domain of Ada
DM55_RS07610	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
DM55_RS07610	PF12833	Helix-turn-helix domain
DM55_RS07615	PF00730	HhH-GPD superfamily base excision DNA repair protein
DM55_RS07615	PF06029	AlkA N-terminal domain
DM55_RS07620	PF04262	Glutamate-cysteine ligase
DM55_RS07625	PF00140	Sigma-70 factor, region 1
DM55_RS07625	PF04539	Sigma-70 region 3
DM55_RS07625	PF04542	Sigma-70 region 2
DM55_RS07625	PF04545	Sigma-70, region 4
DM55_RS07640	PF07813	LTXXQ motif family protein
DM55_RS07645	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS07645	PF03466	LysR substrate binding domain
DM55_RS07650	PF13416	Bacterial extracellular solute-binding protein
DM55_RS07655	PF00850	Histone deacetylase domain
DM55_RS07660	PF00795	Carbon-nitrogen hydrolase
DM55_RS07670	PF04860	Phage portal protein
DM55_RS07680	PF10908	DM55_RS07680
DM55_RS07685	PF13276	DM55_RS07685
DM55_RS07685	PF13683	DM55_RS07685
DM55_RS07690	PF01527	Transposase
DM55_RS07700	PF01610	DM55_RS07700
DM55_RS07700	PF13542	DM55_RS07700
DM55_RS07700	PF14690	DM55_RS07700
DM55_RS07710	PF03061	Thioesterase superfamily
DM55_RS07715	PF01734	Patatin-like phospholipase
DM55_RS07720	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
DM55_RS07720	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
DM55_RS07725	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS07725	PF03466	LysR substrate binding domain
DM55_RS07730	PF01131	DNA topoisomerase
DM55_RS07730	PF01751	Toprim domain
DM55_RS07730	PF13342	DM55_RS07730
DM55_RS07735	PF00085	Thioredoxin
DM55_RS07740	PF02481	DNA recombination-mediator protein A
DM55_RS07745	PF13276	DM55_RS07745
DM55_RS07745	PF13683	DM55_RS07745
DM55_RS07750	PF02481	DNA recombination-mediator protein A
DM55_RS07755	PF01327	Polypeptide deformylase
DM55_RS07760	PF00551	Formyl transferase
DM55_RS07760	PF02911	Formyl transferase, C-terminal domain
DM55_RS07765	PF01810	DM55_RS07765
DM55_RS07770	PF01435	Peptidase family M48
DM55_RS07775	PF01029	NusB family
DM55_RS07775	PF01189	NOL1/NOP2/sun family
DM55_RS07780	PF14334	DM55_RS07780
DM55_RS07785	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS07785	PF00672	HAMP domain
DM55_RS07785	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS07785	PF08448	PAS fold
DM55_RS07790	PF00072	Response regulator receiver domain
DM55_RS07790	PF02954	Bacterial regulatory protein, Fis family
DM55_RS07800	PF06508	Queuosine biosynthesis protein QueC
DM55_RS07805	PF13394	4Fe-4S single cluster domain
DM55_RS07810	PF01242	6-pyruvoyl tetrahydropterin synthase
DM55_RS07815	PF03328	HpcH/HpaI aldolase/citrate lyase family
DM55_RS07820	PF08238	Sel1 repeat
DM55_RS07825	PF01098	DM55_RS07825
DM55_RS07830	PF00905	Penicillin binding protein transpeptidase domain
DM55_RS07830	PF03717	Penicillin-binding Protein dimerisation domain
DM55_RS07835	PF04093	DM55_RS07835
DM55_RS07840	PF04085	rod shape-determining protein MreC
DM55_RS07845	PF06723	MreB/Mbl protein
DM55_RS07850	PF02686	Glu-tRNAGln amidotransferase C subunit
DM55_RS07855	PF01425	Amidase
DM55_RS07860	PF02637	GatB domain
DM55_RS07860	PF02934	GatB/GatE catalytic domain
DM55_RS07865	PF03976	Polyphosphate kinase 2 (PPK2)
DM55_RS07870	PF03372	Endonuclease/Exonuclease/phosphatase family
DM55_RS07880	PF07452	DM55_RS07880
DM55_RS07885	PF07859	alpha/beta hydrolase fold
DM55_RS07890	PF12787	DM55_RS07890
DM55_RS07895	PF07690	Major Facilitator Superfamily
DM55_RS07900	PF01047	MarR family
DM55_RS07905	PF01965	DJ-1/PfpI family
DM55_RS07910	PF01168	Alanine racemase, N-terminal domain
DM55_RS07910	PF14031	Putative serine dehydratase domain
DM55_RS07915	PF01380	SIS domain
DM55_RS07915	PF01418	Helix-turn-helix domain, rpiR family
DM55_RS07920	PF07969	Amidohydrolase family
DM55_RS07930	PF01042	Endoribonuclease L-PSP
DM55_RS07935	PF14489	QueF-like protein
DM55_RS07935	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
DM55_RS07940	PF00291	Pyridoxal-phosphate dependent enzyme
DM55_RS07940	PF00585	C-terminal regulatory domain of Threonine dehydratase
DM55_RS07950	PF01565	FAD binding domain
DM55_RS07950	PF02754	DM55_RS07950
DM55_RS07950	PF02913	FAD linked oxidases, C-terminal domain
DM55_RS07950	PF11880	DM55_RS07950
DM55_RS07950	PF12447	DM55_RS07950
DM55_RS07950	PF13183	4Fe-4S dicluster domain
DM55_RS07955	PF01230	HIT domain
DM55_RS07960	PF06155	Protein of unknown function (DUF971)
DM55_RS07965	PF01209	ubiE/COQ5 methyltransferase family
DM55_RS07970	PF04280	Tim44-like domain
DM55_RS07975	PF02036	SCP-2 sterol transfer family
DM55_RS07980	PF03109	DM55_RS07980
DM55_RS07985	PF05724	Thiopurine S-methyltransferase (TPMT)
DM55_RS07990	PF09723	DM55_RS07990
DM55_RS07995	PF04367	DM55_RS07995
DM55_RS08000	PF00152	tRNA synthetases class II (D, K and N)
DM55_RS08000	PF01336	OB-fold nucleic acid binding domain
DM55_RS08000	PF02938	GAD domain
DM55_RS08005	PF00293	NUDIX domain
DM55_RS08010	PF13091	PLD-like domain
DM55_RS08015	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS08020	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS08020	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS08020	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS08020	PF12418	DM55_RS08020
DM55_RS08020	PF12806	DM55_RS08020
DM55_RS08025	PF00378	Enoyl-CoA hydratase/isomerase family
DM55_RS08025	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
DM55_RS08025	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
DM55_RS08030	PF00108	Thiolase, N-terminal domain
DM55_RS08030	PF02803	Thiolase, C-terminal domain
DM55_RS08035	PF00378	Enoyl-CoA hydratase/isomerase family
DM55_RS08040	PF02634	FdhD/NarQ family
DM55_RS08045	PF09655	DM55_RS08045
DM55_RS08050	PF03061	Thioesterase superfamily
DM55_RS08055	PF00005	ABC transporter
DM55_RS08055	PF00664	ABC transporter transmembrane region
DM55_RS08065	PF00483	Nucleotidyl transferase
DM55_RS08070	PF01636	Phosphotransferase enzyme family
DM55_RS08075	PF04453	Organic solvent tolerance protein
DM55_RS08080	PF00639	PPIC-type PPIASE domain
DM55_RS08080	PF09312	SurA N-terminal domain
DM55_RS08080	PF13616	PPIC-type PPIASE domain
DM55_RS08085	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
DM55_RS08090	PF00398	Ribosomal RNA adenine dimethylase
DM55_RS08095	PF00892	EamA-like transporter family
DM55_RS08100	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
DM55_RS08105	PF01863	Protein of unknown function DUF45
DM55_RS08110	PF01553	Acyltransferase
DM55_RS08115	PF13242	HAD-hyrolase-like
DM55_RS08120	PF02092	DM55_RS08120
DM55_RS08120	PF05746	DALR anticodon binding domain
DM55_RS08125	PF02091	Glycyl-tRNA synthetase alpha subunit
DM55_RS08130	PF00795	Carbon-nitrogen hydrolase
DM55_RS08135	PF00571	CBS domain
DM55_RS08135	PF03471	Transporter associated domain
DM55_RS08140	PF04752	DM55_RS08140
DM55_RS08145	PF02130	Uncharacterized protein family UPF0054
DM55_RS08150	PF02562	PhoH-like protein
DM55_RS08155	PF00919	Uncharacterized protein family UPF0004
DM55_RS08155	PF01938	TRAM domain
DM55_RS08155	PF04055	Radical SAM superfamily
DM55_RS08160	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS08160	PF03466	LysR substrate binding domain
DM55_RS08165	PF07690	Major Facilitator Superfamily
DM55_RS08170	PF01381	Helix-turn-helix
DM55_RS08170	PF07883	Cupin domain
DM55_RS08175	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
DM55_RS08180	PF13419	Haloacid dehalogenase-like hydrolase
DM55_RS08185	PF00892	EamA-like transporter family
DM55_RS08195	PF00733	Asparagine synthase
DM55_RS08195	PF13537	Glutamine amidotransferase domain
DM55_RS08200	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
DM55_RS08205	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
DM55_RS08210	PF01042	Endoribonuclease L-PSP
DM55_RS08215	PF00230	Major intrinsic protein
DM55_RS08220	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
DM55_RS08220	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
DM55_RS08225	PF01266	FAD dependent oxidoreductase
DM55_RS08225	PF16901	DM55_RS08225
DM55_RS08235	PF09550	DM55_RS08235
DM55_RS08240	PF00455	DM55_RS08240
DM55_RS08240	PF08220	DeoR-like helix-turn-helix domain
DM55_RS08245	PF01019	Gamma-glutamyltranspeptidase
DM55_RS08260	PF00270	DEAD/DEAH box helicase
DM55_RS08260	PF00271	Helicase conserved C-terminal domain
DM55_RS08265	PF00034	Cytochrome c
DM55_RS08270	PF00034	Cytochrome c
DM55_RS08275	PF05425	DM55_RS08275
DM55_RS08280	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
DM55_RS08280	PF13378	Enolase C-terminal domain-like
DM55_RS08285	PF04828	Glutathione-dependent formaldehyde-activating enzyme
DM55_RS08290	PF14302	DM55_RS08290
DM55_RS08295	PF00149	Calcineurin-like phosphoesterase
DM55_RS08295	PF16656	DM55_RS08295
DM55_RS08300	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS08300	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS08300	PF03707	DM55_RS08300
DM55_RS08305	PF00072	Response regulator receiver domain
DM55_RS08305	PF13487	HD domain
DM55_RS08315	PF13628	DM55_RS08315
DM55_RS08320	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS08320	PF08447	PAS fold
DM55_RS08335	PF03544	Gram-negative bacterial TonB protein C-terminal
DM55_RS08340	PF10696	DM55_RS08340
DM55_RS08345	PF04932	DM55_RS08345
DM55_RS08345	PF11846	DM55_RS08345
DM55_RS08345	PF15864	DM55_RS08345
DM55_RS08350	PF00114	Pilin (bacterial filament)
DM55_RS08350	PF13633	Prokaryotic N-terminal methylation site
DM55_RS08355	PF03741	DM55_RS08355
DM55_RS08360	PF00549	CoA-ligase
DM55_RS08360	PF02629	CoA binding domain
DM55_RS08365	PF00549	CoA-ligase
DM55_RS08365	PF08442	ATP-grasp domain
DM55_RS08370	PF11136	DM55_RS08370
DM55_RS08375	PF02631	RecX family
DM55_RS08380	PF00154	recA bacterial DNA recombination protein
DM55_RS08385	PF00072	Response regulator receiver domain
DM55_RS08385	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS08390	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS08390	PF00672	HAMP domain
DM55_RS08390	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS08390	PF08521	DM55_RS08390
DM55_RS08395	PF00083	Sugar (and other) transporter
DM55_RS08410	PF00665	Integrase core domain
DM55_RS08410	PF13276	DM55_RS08410
DM55_RS08415	PF01527	Transposase
DM55_RS08420	PF01967	MoaC family
DM55_RS08425	PF01435	Peptidase family M48
DM55_RS08430	PF11161	DM55_RS08430
DM55_RS08435	PF00561	alpha/beta hydrolase fold
DM55_RS08440	PF13474	SnoaL-like domain
DM55_RS08445	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
DM55_RS08450	PF10276	Zinc-finger domain
DM55_RS08455	PF01063	Aminotransferase class IV
DM55_RS08460	PF03591	DM55_RS08460
DM55_RS08465	PF05437	DM55_RS08465
DM55_RS08470	PF00162	Phosphoglycerate kinase
DM55_RS08475	PF00224	Pyruvate kinase, barrel domain
DM55_RS08475	PF02887	Pyruvate kinase, alpha/beta domain
DM55_RS08480	PF01116	Fructose-bisphosphate aldolase class-II
DM55_RS08485	PF01259	SAICAR synthetase
DM55_RS08490	PF00731	AIR carboxylase
DM55_RS08495	PF02222	ATP-grasp domain
DM55_RS08500	PF01300	Telomere recombination
DM55_RS08500	PF03481	Putative GTP-binding controlling metal-binding
DM55_RS08505	PF00657	GDSL-like Lipase/Acylhydrolase
DM55_RS08515	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
DM55_RS08520	PF00072	Response regulator receiver domain
DM55_RS08520	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS08525	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS08525	PF00672	HAMP domain
DM55_RS08525	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS08530	PF13180	PDZ domain
DM55_RS08530	PF13365	Trypsin-like peptidase domain
DM55_RS08535	PF13620	Carboxypeptidase regulatory-like domain
DM55_RS08540	PF04248	Domain of unknown function (DUF427)
DM55_RS08545	PF06240	Carbon monoxide dehydrogenase subunit G (CoxG)
DM55_RS08550	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS08550	PF08361	MAATS-type transcriptional repressor, C-terminal region
DM55_RS08555	PF16576	DM55_RS08555
DM55_RS08560	PF00873	AcrB/AcrD/AcrF family
DM55_RS08565	PF02321	Outer membrane efflux protein
DM55_RS08570	PF14690	DM55_RS08570
DM55_RS08580	PF13276	DM55_RS08580
DM55_RS08580	PF13683	DM55_RS08580
DM55_RS08585	PF01527	Transposase
DM55_RS08590	PF00860	Permease family
DM55_RS08595	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
DM55_RS08600	PF01965	DJ-1/PfpI family
DM55_RS08600	PF12833	Helix-turn-helix domain
DM55_RS08605	PF00107	Zinc-binding dehydrogenase
DM55_RS08605	PF08240	Alcohol dehydrogenase GroES-like domain
DM55_RS08610	PF00756	Putative esterase
DM55_RS08615	PF00950	DM55_RS08615
DM55_RS08620	PF00005	ABC transporter
DM55_RS08625	PF01297	Periplasmic solute binding protein family
DM55_RS08630	PF01475	Ferric uptake regulator family
DM55_RS08635	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS08640	PF00294	pfkB family carbohydrate kinase
DM55_RS08645	PF08013	Tagatose 6 phosphate kinase
DM55_RS08650	PF01547	Bacterial extracellular solute-binding protein
DM55_RS08655	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS08660	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS08665	PF13419	Haloacid dehalogenase-like hydrolase
DM55_RS08670	PF00005	ABC transporter
DM55_RS08670	PF08402	TOBE domain
DM55_RS08675	PF12710	haloacid dehalogenase-like hydrolase
DM55_RS08680	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS08680	PF03466	LysR substrate binding domain
DM55_RS08685	PF00144	Beta-lactamase
DM55_RS08690	PF07690	Major Facilitator Superfamily
DM55_RS08695	PF04198	Putative sugar-binding domain
DM55_RS08700	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
DM55_RS08700	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
DM55_RS08705	PF01232	Mannitol dehydrogenase Rossmann domain
DM55_RS08705	PF08125	Mannitol dehydrogenase C-terminal domain
DM55_RS08710	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS08710	PF03466	LysR substrate binding domain
DM55_RS08715	PF00205	Thiamine pyrophosphate enzyme, central domain
DM55_RS08715	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
DM55_RS08715	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
DM55_RS08720	PF00171	Aldehyde dehydrogenase family
DM55_RS08725	PF02558	Ketopantoate reductase PanE/ApbA
DM55_RS08725	PF08546	Ketopantoate reductase PanE/ApbA C terminal
DM55_RS08735	PF07690	Major Facilitator Superfamily
DM55_RS08740	PF03301	Tryptophan 2,3-dioxygenase
DM55_RS08745	PF00266	Aminotransferase class-V
DM55_RS08750	PF04199	Putative cyclase
DM55_RS08755	PF01037	AsnC family
DM55_RS08755	PF13412	Winged helix-turn-helix DNA-binding
DM55_RS08760	PF01613	Flavin reductase like domain
DM55_RS08770	PF01625	Peptide methionine sulfoxide reductase
DM55_RS08780	PF01904	Protein of unknown function DUF72
DM55_RS08785	PF02353	Mycolic acid cyclopropane synthetase
DM55_RS08790	PF01243	Pyridoxamine 5'-phosphate oxidase
DM55_RS08790	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
DM55_RS08795	PF00899	ThiF family
DM55_RS08810	PF02678	Pirin
DM55_RS08810	PF05726	Pirin C-terminal cupin domain
DM55_RS08815	PF00892	EamA-like transporter family
DM55_RS08820	PF01520	N-acetylmuramoyl-L-alanine amidase
DM55_RS08820	PF11741	AMIN domain
DM55_RS08825	PF02367	Uncharacterised P-loop hydrolase UPF0079
DM55_RS08830	PF08331	DM55_RS08830
DM55_RS08830	PF13484	DM55_RS08830
DM55_RS08835	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
DM55_RS08840	PF00589	Phage integrase family
DM55_RS08840	PF02899	Phage integrase, N-terminal SAM-like domain
DM55_RS08845	PF00501	AMP-binding enzyme
DM55_RS08845	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS08850	PF04073	Aminoacyl-tRNA editing domain
DM55_RS08855	PF02660	DM55_RS08855
DM55_RS08860	PF04461	Protein of unknown function (DUF520)
DM55_RS08865	PF01565	FAD binding domain
DM55_RS08865	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
DM55_RS08870	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
DM55_RS08870	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
DM55_RS08875	PF12112	Protein of unknown function (DUF3579)
DM55_RS08880	PF01649	Ribosomal protein S20
DM55_RS08885	PF03023	DM55_RS08885
DM55_RS08890	PF13369	DM55_RS08890
DM55_RS08890	PF13371	Tetratricopeptide repeat
DM55_RS08895	PF00106	short chain dehydrogenase
DM55_RS08900	PF05598	DM55_RS08900
DM55_RS08900	PF13751	DM55_RS08900
DM55_RS08905	PF07731	Multicopper oxidase
DM55_RS08905	PF07732	Multicopper oxidase
DM55_RS08910	PF00180	Isocitrate/isopropylmalate dehydrogenase
DM55_RS08915	PF00849	RNA pseudouridylate synthase
DM55_RS08920	PF13276	DM55_RS08920
DM55_RS08920	PF13683	DM55_RS08920
DM55_RS08930	PF13356	Domain of unknown function (DUF4102)
DM55_RS08935	PF13683	DM55_RS08935
DM55_RS08940	PF13683	DM55_RS08940
DM55_RS08950	PF01527	Transposase
DM55_RS08960	PF01817	Chorismate mutase type II
DM55_RS08970	PF11162	DM55_RS08970
DM55_RS08975	PF00593	TonB dependent receptor
DM55_RS08975	PF07715	TonB-dependent Receptor Plug Domain
DM55_RS08990	PF04226	DM55_RS08990
DM55_RS09015	PF01610	DM55_RS09015
DM55_RS09015	PF13542	DM55_RS09015
DM55_RS09015	PF14690	DM55_RS09015
DM55_RS09020	PF00316	Fructose-1-6-bisphosphatase
DM55_RS09025	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS09025	PF03466	LysR substrate binding domain
DM55_RS09030	PF01717	Cobalamin-independent synthase, Catalytic domain
DM55_RS09030	PF08267	Cobalamin-independent synthase, N-terminal domain
DM55_RS09035	PF01433	Peptidase family M1
DM55_RS09035	PF11940	Domain of unknown function (DUF3458)
DM55_RS09040	PF13590	Domain of unknown function (DUF4136)
DM55_RS09045	PF01169	DM55_RS09045
DM55_RS09050	PF01979	Amidohydrolase family
DM55_RS09055	PF00860	Permease family
DM55_RS09060	PF00962	Adenosine/AMP deaminase
DM55_RS09065	PF02625	XdhC and CoxI family
DM55_RS09065	PF13478	XdhC Rossmann domain
DM55_RS09070	PF02600	Disulfide bond formation protein DsbB
DM55_RS09075	PF01425	Amidase
DM55_RS09080	PF07722	Peptidase C26
DM55_RS09085	PF00083	Sugar (and other) transporter
DM55_RS09090	PF00515	Tetratricopeptide repeat
DM55_RS09090	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
DM55_RS09090	PF07719	Tetratricopeptide repeat
DM55_RS09090	PF13424	Tetratricopeptide repeat
DM55_RS09090	PF13432	Tetratricopeptide repeat
DM55_RS09090	PF14559	Tetratricopeptide repeat
DM55_RS09095	PF01494	FAD binding domain
DM55_RS09100	PF11390	DM55_RS09100
DM55_RS09105	PF00037	4Fe-4S binding domain
DM55_RS09105	PF00384	Molybdopterin oxidoreductase
DM55_RS09105	PF01568	Molydopterin dinucleotide binding domain
DM55_RS09105	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
DM55_RS09105	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
DM55_RS09105	PF13510	2Fe-2S iron-sulfur cluster binding domain
DM55_RS09110	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
DM55_RS09110	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
DM55_RS09115	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
DM55_RS09120	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS09120	PF12727	PBP superfamily domain
DM55_RS09130	PF00398	Ribosomal RNA adenine dimethylase
DM55_RS09135	PF13276	DM55_RS09135
DM55_RS09135	PF13683	DM55_RS09135
DM55_RS09140	PF01527	Transposase
DM55_RS09145	PF13419	Haloacid dehalogenase-like hydrolase
DM55_RS09150	PF13489	Methyltransferase domain
DM55_RS09155	PF00691	OmpA family
DM55_RS09160	PF00521	DNA gyrase/topoisomerase IV, subunit A
DM55_RS09160	PF03989	DNA gyrase C-terminal domain, beta-propeller
DM55_RS09165	PF09832	Uncharacterized protein conserved in bacteria (DUF2059)
DM55_RS09170	PF00266	Aminotransferase class-V
DM55_RS09175	PF00800	Prephenate dehydratase
DM55_RS09175	PF01817	Chorismate mutase type II
DM55_RS09175	PF01842	ACT domain
DM55_RS09180	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
DM55_RS09185	PF02224	Cytidylate kinase
DM55_RS09190	PF00575	S1 RNA binding domain
DM55_RS09195	PF00216	Bacterial DNA-binding protein
DM55_RS09200	PF05598	DM55_RS09200
DM55_RS09200	PF13751	DM55_RS09200
DM55_RS09205	PF06305	DM55_RS09205
DM55_RS09210	PF13432	Tetratricopeptide repeat
DM55_RS09215	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
DM55_RS09215	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
DM55_RS09215	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
DM55_RS09220	PF00294	pfkB family carbohydrate kinase
DM55_RS09225	PF01370	NAD dependent epimerase/dehydratase family
DM55_RS09230	PF12836	Helix-hairpin-helix motif
DM55_RS09240	PF00291	Pyridoxal-phosphate dependent enzyme
DM55_RS09245	PF13406	Transglycosylase SLT domain
DM55_RS09250	PF00850	Histone deacetylase domain
DM55_RS09255	PF12146	Putative lysophospholipase
DM55_RS09260	PF00005	ABC transporter
DM55_RS09260	PF09383	NIL domain
DM55_RS09265	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS09270	PF03180	NLPA lipoprotein
DM55_RS09275	PF01012	Electron transfer flavoprotein domain
DM55_RS09280	PF00766	Electron transfer flavoprotein FAD-binding domain
DM55_RS09280	PF01012	Electron transfer flavoprotein domain
DM55_RS09290	PF01266	FAD dependent oxidoreductase
DM55_RS09295	PF01037	AsnC family
DM55_RS09295	PF13412	Winged helix-turn-helix DNA-binding
DM55_RS09300	PF04055	Radical SAM superfamily
DM55_RS09305	PF05154	DM55_RS09305
DM55_RS09315	PF00886	Ribosomal protein S16
DM55_RS09320	PF01782	RimM N-terminal domain
DM55_RS09320	PF05239	PRC-barrel domain
DM55_RS09325	PF01746	tRNA (Guanine-1)-methyltransferase
DM55_RS09330	PF01245	Ribosomal protein L19
DM55_RS09335	PF13527	Acetyltransferase (GNAT) domain
DM55_RS09340	PF00293	NUDIX domain
DM55_RS09345	PF03186	DM55_RS09345
DM55_RS09355	PF03193	Protein of unknown function, DUF258
DM55_RS09360	PF01435	Peptidase family M48
DM55_RS09360	PF16491	DM55_RS09360
DM55_RS09365	PF00929	Exonuclease
DM55_RS09370	PF00994	Probable molybdopterin binding domain
DM55_RS09375	PF04751	Protein of unknown function (DUF615)
DM55_RS09380	PF01523	Putative modulator of DNA gyrase
DM55_RS09390	PF00186	Dihydrofolate reductase
DM55_RS09395	PF00158	Sigma-54 interaction domain
DM55_RS09395	PF02954	Bacterial regulatory protein, Fis family
DM55_RS09420	PF00158	Sigma-54 interaction domain
DM55_RS09420	PF02954	Bacterial regulatory protein, Fis family
DM55_RS09425	PF00303	Thymidylate synthase
DM55_RS09430	PF05598	DM55_RS09430
DM55_RS09430	PF13751	DM55_RS09430
DM55_RS09440	PF12840	Helix-turn-helix domain
DM55_RS09450	PF03061	Thioesterase superfamily
DM55_RS09455	PF00206	Lyase
DM55_RS09455	PF10415	Fumarase C C-terminus
DM55_RS09465	PF13276	DM55_RS09465
DM55_RS09465	PF13683	DM55_RS09465
DM55_RS09470	PF01527	Transposase
DM55_RS09475	PF01554	MatE
DM55_RS09480	PF13275	S4 domain
DM55_RS09490	PF13317	DM55_RS09490
DM55_RS09495	PF05981	DM55_RS09495
DM55_RS09510	PF00037	4Fe-4S binding domain
DM55_RS09510	PF11953	Domain of unknown function (DUF3470)
DM55_RS09510	PF12800	4Fe-4S binding domain
DM55_RS09515	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
DM55_RS09520	PF02589	Uncharacterised ACR, YkgG family COG1556
DM55_RS09525	PF16980	DM55_RS09525
DM55_RS09530	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
DM55_RS09530	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
DM55_RS09535	PF02646	DM55_RS09535
DM55_RS09540	PF00583	Acetyltransferase (GNAT) family
DM55_RS09550	PF00994	Probable molybdopterin binding domain
DM55_RS09550	PF03453	MoeA N-terminal region (domain I and II)
DM55_RS09550	PF03454	MoeA C-terminal region (domain IV)
DM55_RS09555	PF12804	MobA-like NTP transferase domain
DM55_RS09560	PF04055	Radical SAM superfamily
DM55_RS09560	PF06463	Molybdenum Cofactor Synthesis C
DM55_RS09560	PF13394	4Fe-4S single cluster domain
DM55_RS09565	PF00575	S1 RNA binding domain
DM55_RS09565	PF10150	Ribonuclease E/G family
DM55_RS09570	PF00849	RNA pseudouridylate synthase
DM55_RS09570	PF01479	S4 domain
DM55_RS09575	PF13242	HAD-hyrolase-like
DM55_RS09580	PF00355	Rieske [2Fe-2S] domain
DM55_RS09585	PF01343	Peptidase family S49
DM55_RS09590	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
DM55_RS09595	PF02545	Maf-like protein
DM55_RS09600	PF02620	DM55_RS09600
DM55_RS09605	PF01783	Ribosomal L32p protein family
DM55_RS09610	PF02504	Fatty acid synthesis protein
DM55_RS09615	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
DM55_RS09615	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
DM55_RS09620	PF00698	Acyl transferase domain
DM55_RS09625	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS09630	PF00550	Phosphopantetheine attachment site
DM55_RS09635	PF00109	Beta-ketoacyl synthase, N-terminal domain
DM55_RS09635	PF02801	Beta-ketoacyl synthase, C-terminal domain
DM55_RS09645	PF04542	Sigma-70 region 2
DM55_RS09645	PF08281	Sigma-70, region 4
DM55_RS09650	PF03872	Anti sigma-E protein RseA, N-terminal domain
DM55_RS09655	PF03888	MucB/RseB family
DM55_RS09655	PF17188	DM55_RS09655
DM55_RS09660	PF13180	PDZ domain
DM55_RS09660	PF13365	Trypsin-like peptidase domain
DM55_RS09665	PF05768	Glutaredoxin-like domain (DUF836)
DM55_RS09670	PF00009	Elongation factor Tu GTP binding domain
DM55_RS09670	PF00679	Elongation factor G C-terminus
DM55_RS09670	PF03144	Elongation factor Tu domain 2
DM55_RS09670	PF06421	GTP-binding protein LepA C-terminus
DM55_RS09675	PF00717	Peptidase S24-like
DM55_RS09675	PF10502	Signal peptidase, peptidase S26
DM55_RS09680	PF00035	Double-stranded RNA binding motif
DM55_RS09680	PF14622	Ribonuclease-III-like
DM55_RS09685	PF01926	50S ribosome-binding GTPase
DM55_RS09685	PF07650	KH domain
DM55_RS09690	PF02565	Recombination protein O C terminal
DM55_RS09690	PF11967	Recombination protein O N terminal
DM55_RS09695	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
DM55_RS09700	PF01648	4'-phosphopantetheinyl transferase superfamily
DM55_RS09705	PF00933	Glycosyl hydrolase family 3 N terminal domain
DM55_RS09710	PF00072	Response regulator receiver domain
DM55_RS09710	PF00158	Sigma-54 interaction domain
DM55_RS09710	PF02954	Bacterial regulatory protein, Fis family
DM55_RS09715	PF01132	Elongation factor P (EF-P) OB domain
DM55_RS09715	PF08207	Elongation factor P (EF-P) KOW-like domain
DM55_RS09715	PF09285	Elongation factor P, C-terminal
DM55_RS09720	PF10093	DM55_RS09720
DM55_RS09725	PF01541	GIY-YIG catalytic domain
DM55_RS09725	PF02151	UvrB/uvrC motif
DM55_RS09725	PF08459	UvrC Helix-hairpin-helix N-terminal
DM55_RS09725	PF14520	Helix-hairpin-helix domain
DM55_RS09730	PF01066	CDP-alcohol phosphatidyltransferase
DM55_RS09755	PF13185	GAF domain
DM55_RS09760	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS09760	PF03466	LysR substrate binding domain
DM55_RS09765	PF02678	Pirin
DM55_RS09765	PF05726	Pirin C-terminal cupin domain
DM55_RS09770	PF13673	Acetyltransferase (GNAT) domain
DM55_RS09775	PF09678	DM55_RS09775
DM55_RS09780	PF04314	Protein of unknown function (DUF461)
DM55_RS09785	PF02630	SCO1/SenC
DM55_RS09790	PF02358	Trehalose-phosphatase
DM55_RS09795	PF00982	Glycosyltransferase family 20
DM55_RS09800	PF00005	ABC transporter
DM55_RS09800	PF00664	ABC transporter transmembrane region
DM55_RS09805	PF00534	Glycosyl transferases group 1
DM55_RS09805	PF13439	Glycosyltransferase Family 4
DM55_RS09815	PF09980	DM55_RS09815
DM55_RS09820	PF01266	FAD dependent oxidoreductase
DM55_RS09825	PF13458	Periplasmic binding protein
DM55_RS09845	PF13683	DM55_RS09845
DM55_RS09850	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS09855	PF00005	ABC transporter
DM55_RS09860	PF12833	Helix-turn-helix domain
DM55_RS09865	PF00202	Aminotransferase class-III
DM55_RS09870	PF04958	Arginine N-succinyltransferase beta subunit
DM55_RS09875	PF04958	Arginine N-succinyltransferase beta subunit
DM55_RS09880	PF00171	Aldehyde dehydrogenase family
DM55_RS09885	PF04996	Succinylarginine dihydrolase
DM55_RS09890	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
DM55_RS09895	PF00043	Glutathione S-transferase, C-terminal domain
DM55_RS09900	PF00497	Bacterial extracellular solute-binding proteins, family 3
DM55_RS09905	PF00487	DM55_RS09905
DM55_RS09910	PF03626	DM55_RS09910
DM55_RS09925	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
DM55_RS09925	PF06481	COX Aromatic Rich Motif
DM55_RS09930	PF01814	Hemerythrin HHE cation binding domain
DM55_RS09935	PF02082	Transcriptional regulator
DM55_RS09940	PF10006	DM55_RS09940
DM55_RS09945	PF01883	Domain of unknown function DUF59
DM55_RS09950	PF01592	NifU-like N terminal domain
DM55_RS09955	PF00266	Aminotransferase class-V
DM55_RS09960	PF01458	Uncharacterized protein family (UPF0051)
DM55_RS09965	PF00005	ABC transporter
DM55_RS09975	PF05940	DM55_RS09975
DM55_RS09980	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS09985	PF04055	Radical SAM superfamily
DM55_RS09985	PF06969	HemN C-terminal domain
DM55_RS09990	PF00027	Cyclic nucleotide-binding domain
DM55_RS09990	PF13545	Crp-like helix-turn-helix domain
DM55_RS10000	PF03060	Nitronate monooxygenase
DM55_RS10005	PF01136	DM55_RS10005
DM55_RS10010	PF01136	DM55_RS10010
DM55_RS10015	PF02036	SCP-2 sterol transfer family
DM55_RS10020	PF08859	DM55_RS10020
DM55_RS10025	PF04055	Radical SAM superfamily
DM55_RS10025	PF13353	4Fe-4S single cluster domain
DM55_RS10030	PF13597	Anaerobic ribonucleoside-triphosphate reductase
DM55_RS10035	PF13597	Anaerobic ribonucleoside-triphosphate reductase
DM55_RS10040	PF05940	DM55_RS10040
DM55_RS10050	PF01883	Domain of unknown function DUF59
DM55_RS10055	PF00115	Cytochrome C and Quinol oxidase polypeptide I
DM55_RS10065	PF00487	DM55_RS10065
DM55_RS10070	PF00875	DNA photolyase
DM55_RS10070	PF03441	FAD binding domain of DNA photolyase
DM55_RS10075	PF01583	Adenylylsulphate kinase
DM55_RS10080	PF00196	Bacterial regulatory proteins, luxR family
DM55_RS10080	PF03472	Autoinducer binding domain
DM55_RS10090	PF12146	Putative lysophospholipase
DM55_RS10095	PF01648	4'-phosphopantetheinyl transferase superfamily
DM55_RS10100	PF00221	Aromatic amino acid lyase
DM55_RS10105	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS10105	PF07702	UTRA domain
DM55_RS10110	PF01175	Urocanase
DM55_RS10115	PF05962	HutD
DM55_RS10120	PF01979	Amidohydrolase family
DM55_RS10125	PF01979	Amidohydrolase family
DM55_RS10130	PF05013	N-formylglutamate amidohydrolase
DM55_RS10150	PF07722	Peptidase C26
DM55_RS10155	PF00120	Glutamine synthetase, catalytic domain
DM55_RS10160	PF00202	Aminotransferase class-III
DM55_RS10165	PF01527	Transposase
DM55_RS10170	PF13276	DM55_RS10170
DM55_RS10170	PF13683	DM55_RS10170
DM55_RS10185	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS10185	PF03466	LysR substrate binding domain
DM55_RS10190	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
DM55_RS10190	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
DM55_RS10195	PF06073	DM55_RS10195
DM55_RS10200	PF01507	Phosphoadenosine phosphosulfate reductase family
DM55_RS10205	PF01507	Phosphoadenosine phosphosulfate reductase family
DM55_RS10210	PF00009	Elongation factor Tu GTP binding domain
DM55_RS10215	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
DM55_RS10220	PF01903	CbiX
DM55_RS10225	PF03739	DM55_RS10225
DM55_RS10230	PF03739	DM55_RS10230
DM55_RS10235	PF00883	Cytosol aminopeptidase family, catalytic domain
DM55_RS10235	PF02789	Cytosol aminopeptidase family, N-terminal domain
DM55_RS10240	PF04364	DNA polymerase III chi subunit, HolC
DM55_RS10245	PF10667	DM55_RS10245
DM55_RS10250	PF00034	Cytochrome c
DM55_RS10255	PF05598	DM55_RS10255
DM55_RS10255	PF13751	DM55_RS10255
DM55_RS10260	PF00920	Dehydratase family
DM55_RS10265	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS10265	PF03466	LysR substrate binding domain
DM55_RS10270	PF01790	DM55_RS10270
DM55_RS10275	PF04402	Protein of unknown function (DUF541)
DM55_RS10280	PF01878	EVE domain
DM55_RS10285	PF05164	Cell division protein ZapA
DM55_RS10295	PF00593	TonB dependent receptor
DM55_RS10295	PF07715	TonB-dependent Receptor Plug Domain
DM55_RS10300	PF01032	FecCD transport family
DM55_RS10305	PF00005	ABC transporter
DM55_RS10310	PF02277	Phosphoribosyltransferase
DM55_RS10315	PF02654	DM55_RS10315
DM55_RS10320	PF00300	Histidine phosphatase superfamily (branch 1)
DM55_RS10330	PF01497	Periplasmic binding protein
DM55_RS10335	PF00155	Aminotransferase class I and II
DM55_RS10340	PF03186	DM55_RS10340
DM55_RS10345	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
DM55_RS10350	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
DM55_RS10350	PF07685	CobB/CobQ-like glutamine amidotransferase domain
DM55_RS10355	PF07681	DM55_RS10355
DM55_RS10360	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
DM55_RS10365	PF02261	Aspartate decarboxylase
DM55_RS10370	PF02569	Pantoate-beta-alanine ligase
DM55_RS10375	PF02616	ScpA/B protein
DM55_RS10380	PF11943	DM55_RS10380
DM55_RS10385	PF01103	Surface antigen
DM55_RS10390	PF04357	DM55_RS10390
DM55_RS10400	PF00891	O-methyltransferase
DM55_RS10405	PF01588	Putative tRNA binding domain
DM55_RS10405	PF09334	tRNA synthetases class I (M)
DM55_RS10410	PF00691	OmpA family
DM55_RS10410	PF13441	DM55_RS10410
DM55_RS10415	PF01883	Domain of unknown function DUF59
DM55_RS10415	PF10609	ParA/MinD ATPase like
DM55_RS10420	PF00080	Copper/zinc superoxide dismutase (SODC)
DM55_RS10425	PF00692	dUTPase
DM55_RS10430	PF01276	Orn/Lys/Arg decarboxylase, major domain
DM55_RS10430	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
DM55_RS10430	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
DM55_RS10435	PF07007	Protein of unknown function (DUF1311)
DM55_RS10440	PF13419	Haloacid dehalogenase-like hydrolase
DM55_RS10445	PF00206	Lyase
DM55_RS10445	PF14698	Argininosuccinate lyase C-terminal
DM55_RS10450	PF00577	Outer membrane usher protein
DM55_RS10450	PF13953	PapC C-terminal domain
DM55_RS10455	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
DM55_RS10460	PF05229	DM55_RS10460
DM55_RS10465	PF13276	DM55_RS10465
DM55_RS10465	PF13683	DM55_RS10465
DM55_RS10470	PF01527	Transposase
DM55_RS10480	PF01566	DM55_RS10480
DM55_RS10495	PF00816	H-NS histone family
DM55_RS10500	PF04909	Amidohydrolase
DM55_RS10505	PF07690	Major Facilitator Superfamily
DM55_RS10510	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS10510	PF03466	LysR substrate binding domain
DM55_RS10515	PF05229	DM55_RS10515
DM55_RS10520	PF05229	DM55_RS10520
DM55_RS10525	PF05229	DM55_RS10525
DM55_RS10530	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
DM55_RS10540	PF05229	DM55_RS10540
DM55_RS10545	PF00072	Response regulator receiver domain
DM55_RS10545	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS10545	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS10550	PF00072	Response regulator receiver domain
DM55_RS10550	PF00196	Bacterial regulatory proteins, luxR family
DM55_RS10560	PF02321	Outer membrane efflux protein
DM55_RS10565	PF07690	Major Facilitator Superfamily
DM55_RS10570	PF16576	DM55_RS10570
DM55_RS10575	PF07055	Enoyl reductase FAD binding domain
DM55_RS10575	PF12241	Trans-2-enoyl-CoA reductase catalytic region
DM55_RS10575	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
DM55_RS10580	PF04185	Phosphoesterase family
DM55_RS10585	PF03150	Di-haem cytochrome c peroxidase
DM55_RS10590	PF13539	D-alanyl-D-alanine carboxypeptidase
DM55_RS10595	PF00933	Glycosyl hydrolase family 3 N terminal domain
DM55_RS10600	PF16998	DM55_RS10600
DM55_RS10605	PF00293	NUDIX domain
DM55_RS10610	PF00749	tRNA synthetases class I (E and Q), catalytic domain
DM55_RS10610	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
DM55_RS10620	PF02515	CoA-transferase family III
DM55_RS10630	PF01411	tRNA synthetases class II (A)
DM55_RS10630	PF02272	DHHA1 domain
DM55_RS10630	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
DM55_RS10635	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS10635	PF03466	LysR substrate binding domain
DM55_RS10640	PF06779	DM55_RS10640
DM55_RS10645	PF01527	Transposase
DM55_RS10650	PF13276	DM55_RS10650
DM55_RS10650	PF13683	DM55_RS10650
DM55_RS10655	PF06779	DM55_RS10655
DM55_RS10660	PF13180	PDZ domain
DM55_RS10660	PF13365	Trypsin-like peptidase domain
DM55_RS10670	PF00293	NUDIX domain
DM55_RS10675	PF01906	Putative heavy-metal-binding
DM55_RS10680	PF00465	Iron-containing alcohol dehydrogenase
DM55_RS10685	PF03061	Thioesterase superfamily
DM55_RS10690	PF02653	DM55_RS10690
DM55_RS10695	PF00005	ABC transporter
DM55_RS10695	PF02653	DM55_RS10695
DM55_RS10695	PF12399	Branched-chain amino acid ATP-binding cassette transporter
DM55_RS10700	PF00005	ABC transporter
DM55_RS10705	PF04962	KduI/IolB family
DM55_RS10710	PF01261	Xylose isomerase-like TIM barrel
DM55_RS10715	PF00205	Thiamine pyrophosphate enzyme, central domain
DM55_RS10715	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
DM55_RS10715	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
DM55_RS10720	PF00294	pfkB family carbohydrate kinase
DM55_RS10720	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
DM55_RS10725	PF00005	ABC transporter
DM55_RS10730	PF02653	DM55_RS10730
DM55_RS10735	PF13407	Periplasmic binding protein domain
DM55_RS10740	PF01380	SIS domain
DM55_RS10740	PF01418	Helix-turn-helix domain, rpiR family
DM55_RS10745	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
DM55_RS10745	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
DM55_RS10750	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
DM55_RS10750	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
DM55_RS10755	PF01206	Sulfurtransferase TusA
DM55_RS10765	PF00072	Response regulator receiver domain
DM55_RS10765	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS10770	PF01476	LysM domain
DM55_RS10770	PF04773	FecR protein
DM55_RS10775	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS10775	PF05226	DM55_RS10775
DM55_RS10780	PF13590	Domain of unknown function (DUF4136)
DM55_RS10785	PF00483	Nucleotidyl transferase
DM55_RS10790	PF00133	tRNA synthetases class I (I, L, M and V)
DM55_RS10790	PF08264	Anticodon-binding domain of tRNA
DM55_RS10790	PF10458	Valyl tRNA synthetase tRNA binding arm
DM55_RS10795	PF00580	UvrD/REP helicase N-terminal domain
DM55_RS10795	PF13361	UvrD-like helicase C-terminal domain
DM55_RS10800	PF01048	Phosphorylase superfamily
DM55_RS10805	PF07690	Major Facilitator Superfamily
DM55_RS10810	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS10810	PF12729	DM55_RS10810
DM55_RS10820	PF16576	DM55_RS10820
DM55_RS10825	PF07869	DM55_RS10825
DM55_RS10830	PF04632	DM55_RS10830
DM55_RS10835	PF02321	Outer membrane efflux protein
DM55_RS10840	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS10840	PF03466	LysR substrate binding domain
DM55_RS10850	PF12850	Calcineurin-like phosphoesterase superfamily domain
DM55_RS10855	PF01565	FAD binding domain
DM55_RS10855	PF02913	FAD linked oxidases, C-terminal domain
DM55_RS10860	PF09842	DM55_RS10860
DM55_RS10865	PF03358	NADPH-dependent FMN reductase
DM55_RS10870	PF03631	DM55_RS10870
DM55_RS10875	PF06127	DM55_RS10875
DM55_RS10880	PF00571	CBS domain
DM55_RS10885	PF01553	Acyltransferase
DM55_RS10885	PF07690	Major Facilitator Superfamily
DM55_RS10895	PF01264	Chorismate synthase
DM55_RS10905	PF13518	Helix-turn-helix domain
DM55_RS10910	PF13276	DM55_RS10910
DM55_RS10915	PF00665	Integrase core domain
DM55_RS10915	PF13276	DM55_RS10915
DM55_RS10920	PF01527	Transposase
DM55_RS10925	PF05229	DM55_RS10925
DM55_RS10930	PF13560	Helix-turn-helix domain
DM55_RS10935	PF08241	Methyltransferase domain
DM55_RS10940	PF05598	DM55_RS10940
DM55_RS10940	PF13751	DM55_RS10940
DM55_RS10945	PF00311	Phosphoenolpyruvate carboxylase
DM55_RS10955	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
DM55_RS10955	PF03900	Porphobilinogen deaminase, C-terminal domain
DM55_RS10960	PF02602	Uroporphyrinogen-III synthase HemD
DM55_RS10960	PF04375	DM55_RS10960
DM55_RS10965	PF07219	DM55_RS10965
DM55_RS10965	PF13424	Tetratricopeptide repeat
DM55_RS10970	PF07690	Major Facilitator Superfamily
DM55_RS10975	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS10980	PF00171	Aldehyde dehydrogenase family
DM55_RS10985	PF00719	Inorganic pyrophosphatase
DM55_RS10990	PF01541	GIY-YIG catalytic domain
DM55_RS11000	PF04339	DM55_RS11000
DM55_RS11005	PF00795	Carbon-nitrogen hydrolase
DM55_RS11005	PF02540	NAD synthase
DM55_RS11010	PF00543	Nitrogen regulatory protein P-II
DM55_RS11015	PF13609	Gram-negative porin
DM55_RS11020	PF00005	ABC transporter
DM55_RS11025	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS11030	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS11035	PF00497	Bacterial extracellular solute-binding proteins, family 3
DM55_RS11050	PF13801	Heavy-metal resistance
DM55_RS11055	PF00072	Response regulator receiver domain
DM55_RS11055	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS11060	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS11060	PF00672	HAMP domain
DM55_RS11060	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS11070	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS11075	PF00005	ABC transporter
DM55_RS11075	PF09821	DM55_RS11075
DM55_RS11080	PF00665	Integrase core domain
DM55_RS11080	PF13276	DM55_RS11080
DM55_RS11085	PF01527	Transposase
DM55_RS11095	PF05598	DM55_RS11095
DM55_RS11095	PF13751	DM55_RS11095
DM55_RS11105	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS11105	PF03466	LysR substrate binding domain
DM55_RS11110	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS11110	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS11115	PF02515	CoA-transferase family III
DM55_RS11120	PF00083	Sugar (and other) transporter
DM55_RS11125	PF04362	Bacterial Fe(2+) trafficking
DM55_RS11130	PF00583	Acetyltransferase (GNAT) family
DM55_RS11130	PF00696	Amino acid kinase family
DM55_RS11135	PF00271	Helicase conserved C-terminal domain
DM55_RS11135	PF04408	Helicase associated domain (HA2)
DM55_RS11135	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
DM55_RS11135	PF11898	DM55_RS11135
DM55_RS11140	PF10282	Lactonase, 7-bladed beta-propeller
DM55_RS11145	PF04116	DM55_RS11145
DM55_RS11150	PF07264	Etoposide-induced protein 2
DM55_RS11155	PF00994	Probable molybdopterin binding domain
DM55_RS11160	PF00581	Rhodanese-like domain
DM55_RS11165	PF00120	Glutamine synthetase, catalytic domain
DM55_RS11165	PF03951	Glutamine synthetase, beta-Grasp domain
DM55_RS11170	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS11170	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS11175	PF00072	Response regulator receiver domain
DM55_RS11175	PF00158	Sigma-54 interaction domain
DM55_RS11175	PF02954	Bacterial regulatory protein, Fis family
DM55_RS11180	PF05598	DM55_RS11180
DM55_RS11180	PF13751	DM55_RS11180
DM55_RS11185	PF03372	Endonuclease/Exonuclease/phosphatase family
DM55_RS11190	PF00072	Response regulator receiver domain
DM55_RS11190	PF00196	Bacterial regulatory proteins, luxR family
DM55_RS11195	PF00672	HAMP domain
DM55_RS11195	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS11195	PF07730	Histidine kinase
DM55_RS11195	PF13185	GAF domain
DM55_RS11195	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
DM55_RS11200	PF02665	Nitrate reductase gamma subunit
DM55_RS11205	PF02613	Nitrate reductase delta subunit
DM55_RS11210	PF13247	4Fe-4S dicluster domain
DM55_RS11210	PF14711	Respiratory nitrate reductase beta C-terminal
DM55_RS11215	PF00384	Molybdopterin oxidoreductase
DM55_RS11215	PF01568	Molydopterin dinucleotide binding domain
DM55_RS11215	PF14710	Respiratory nitrate reductase alpha N-terminal
DM55_RS11220	PF07690	Major Facilitator Superfamily
DM55_RS11225	PF07690	Major Facilitator Superfamily
DM55_RS11235	PF00817	impB/mucB/samB family
DM55_RS11235	PF11798	IMS family HHH motif
DM55_RS11235	PF11799	impB/mucB/samB family C-terminal domain
DM55_RS11240	PF01432	Peptidase family M3
DM55_RS11245	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
DM55_RS11245	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
DM55_RS11250	PF00072	Response regulator receiver domain
DM55_RS11250	PF00196	Bacterial regulatory proteins, luxR family
DM55_RS11255	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS11255	PF00989	PAS fold
DM55_RS11255	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS11255	PF13188	PAS domain
DM55_RS11260	PF00456	Transketolase, thiamine diphosphate binding domain
DM55_RS11265	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
DM55_RS11265	PF00364	Biotin-requiring enzyme
DM55_RS11265	PF02817	e3 binding domain
DM55_RS11270	PF00364	Biotin-requiring enzyme
DM55_RS11270	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
DM55_RS11270	PF07992	Pyridine nucleotide-disulphide oxidoreductase
DM55_RS11280	PF00768	D-alanyl-D-alanine carboxypeptidase
DM55_RS11285	PF09361	DM55_RS11285
DM55_RS11300	PF01527	Transposase
DM55_RS11305	PF13276	DM55_RS11305
DM55_RS11305	PF13683	DM55_RS11305
DM55_RS11320	PF01176	Translation initiation factor 1A / IF-1
DM55_RS11330	PF00561	alpha/beta hydrolase fold
DM55_RS11335	PF10067	DM55_RS11335
DM55_RS11340	PF00301	Rubredoxin
DM55_RS11345	PF14347	DM55_RS11345
DM55_RS11350	PF00005	ABC transporter
DM55_RS11350	PF12848	ABC transporter
DM55_RS11350	PF16326	DM55_RS11350
DM55_RS11355	PF00204	DNA gyrase B
DM55_RS11355	PF00986	DNA gyrase B subunit, carboxyl terminus
DM55_RS11355	PF01751	Toprim domain
DM55_RS11355	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS11360	PF00521	DNA gyrase/topoisomerase IV, subunit A
DM55_RS11370	PF05425	DM55_RS11370
DM55_RS11375	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS11375	PF03466	LysR substrate binding domain
DM55_RS11380	PF05232	DM55_RS11380
DM55_RS11385	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS11385	PF03466	LysR substrate binding domain
DM55_RS11390	PF00083	Sugar (and other) transporter
DM55_RS11395	PF01546	Peptidase family M20/M25/M40
DM55_RS11400	PF00850	Histone deacetylase domain
DM55_RS11405	PF02417	DM55_RS11405
DM55_RS11410	PF00563	EAL domain
DM55_RS11410	PF00990	GGDEF domain
DM55_RS11410	PF02743	Cache domain
DM55_RS11415	PF02567	Phenazine biosynthesis-like protein
DM55_RS11420	PF14588	YjgF/chorismate_mutase-like, putative endoribonuclease
DM55_RS11425	PF13276	DM55_RS11425
DM55_RS11425	PF13683	DM55_RS11425
DM55_RS11430	PF00953	Glycosyl transferase family 4
DM55_RS11435	PF16363	DM55_RS11435
DM55_RS11440	PF13477	Glycosyl transferase 4-like
DM55_RS11440	PF13692	Glycosyl transferases group 1
DM55_RS11445	PF00535	Glycosyl transferase family 2
DM55_RS11450	PF01943	DM55_RS11450
DM55_RS11455	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
DM55_RS11455	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
DM55_RS11455	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
DM55_RS11455	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
DM55_RS11460	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
DM55_RS11465	PF11004	DM55_RS11465
DM55_RS11470	PF00534	Glycosyl transferases group 1
DM55_RS11470	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
DM55_RS11475	PF02492	CobW/HypB/UreG, nucleotide-binding domain
DM55_RS11480	PF01730	UreF
DM55_RS11485	PF02814	UreE urease accessory protein, N-terminal domain
DM55_RS11485	PF05194	UreE urease accessory protein, C-terminal domain
DM55_RS11490	PF00449	Urease alpha-subunit, N-terminal domain
DM55_RS11490	PF01979	Amidohydrolase family
DM55_RS11495	PF00699	Urease beta subunit
DM55_RS11500	PF00547	Urease, gamma subunit
DM55_RS11505	PF01774	UreD urease accessory protein
DM55_RS11510	PF00005	ABC transporter
DM55_RS11515	PF00005	ABC transporter
DM55_RS11515	PF12399	Branched-chain amino acid ATP-binding cassette transporter
DM55_RS11520	PF02653	DM55_RS11520
DM55_RS11525	PF02653	DM55_RS11525
DM55_RS11530	PF13433	Periplasmic binding protein domain
DM55_RS11535	PF00202	Aminotransferase class-III
DM55_RS11540	PF00581	Rhodanese-like domain
DM55_RS11545	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
DM55_RS11555	PF04055	Radical SAM superfamily
DM55_RS11555	PF06969	HemN C-terminal domain
DM55_RS11565	PF07273	Protein of unknown function (DUF1439)
DM55_RS11570	PF02673	DM55_RS11570
DM55_RS11575	PF02390	Putative methyltransferase
DM55_RS11590	PF08241	Methyltransferase domain
DM55_RS11600	PF02537	DM55_RS11600
DM55_RS11605	PF02641	Uncharacterized ACR, COG1993
DM55_RS11610	PF02325	DM55_RS11610
DM55_RS11615	PF03807	NADP oxidoreductase coenzyme F420-dependent
DM55_RS11615	PF10727	Rossmann-like domain
DM55_RS11615	PF10728	Domain of unknown function (DUF2520)
DM55_RS11625	PF00291	Pyridoxal-phosphate dependent enzyme
DM55_RS11630	PF01810	DM55_RS11630
DM55_RS11635	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
DM55_RS11640	PF01464	Transglycosylase SLT domain
DM55_RS11645	PF00155	Aminotransferase class I and II
DM55_RS11650	PF01029	NusB family
DM55_RS11655	PF00885	6,7-dimethyl-8-ribityllumazine synthase
DM55_RS11660	PF00925	GTP cyclohydrolase II
DM55_RS11660	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
DM55_RS11665	PF00677	Lumazine binding domain
DM55_RS11670	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
DM55_RS11670	PF01872	RibD C-terminal domain
DM55_RS11675	PF00202	Aminotransferase class-III
DM55_RS11690	PF07690	Major Facilitator Superfamily
DM55_RS11695	PF11287	DM55_RS11695
DM55_RS11700	PF00291	Pyridoxal-phosphate dependent enzyme
DM55_RS11705	PF00005	ABC transporter
DM55_RS11710	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS11715	PF00497	Bacterial extracellular solute-binding proteins, family 3
DM55_RS11720	PF01380	SIS domain
DM55_RS11720	PF01418	Helix-turn-helix domain, rpiR family
DM55_RS11720	PF02685	Glucokinase
DM55_RS11725	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
DM55_RS11730	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
DM55_RS11730	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
DM55_RS11735	PF01547	Bacterial extracellular solute-binding protein
DM55_RS11740	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS11745	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS11750	PF00005	ABC transporter
DM55_RS11750	PF08402	TOBE domain
DM55_RS11755	PF03458	DM55_RS11755
DM55_RS11760	PF01713	Smr domain
DM55_RS11765	PF07992	Pyridine nucleotide-disulphide oxidoreductase
DM55_RS11770	PF01580	FtsK/SpoIIIE family
DM55_RS11770	PF09397	Ftsk gamma domain
DM55_RS11770	PF13491	DM55_RS11770
DM55_RS11775	PF03548	Outer membrane lipoprotein carrier protein LolA
DM55_RS11785	PF00004	ATPase family associated with various cellular activities (AAA)
DM55_RS11785	PF12002	MgsA AAA+ ATPase C terminal
DM55_RS11785	PF16193	DM55_RS11785
DM55_RS11790	PF09932	DM55_RS11790
DM55_RS11795	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
DM55_RS11795	PF02403	Seryl-tRNA synthetase N-terminal domain
DM55_RS11815	PF03775	Septum formation inhibitor MinC, C-terminal domain
DM55_RS11815	PF05209	Septum formation inhibitor MinC, N-terminal domain
DM55_RS11820	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
DM55_RS11825	PF03776	Septum formation topological specificity factor MinE
DM55_RS11830	PF12779	DM55_RS11830
DM55_RS11840	PF00654	Voltage gated chloride channel
DM55_RS11845	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
DM55_RS11855	PF00083	Sugar (and other) transporter
DM55_RS11855	PF07690	Major Facilitator Superfamily
DM55_RS11860	PF13103	TonB C terminal
DM55_RS11885	PF04055	Radical SAM superfamily
DM55_RS11885	PF06969	HemN C-terminal domain
DM55_RS11890	PF01725	Ham1 family
DM55_RS11895	PF01138	3' exoribonuclease family, domain 1
DM55_RS11895	PF03725	3' exoribonuclease family, domain 2
DM55_RS11900	PF03755	DM55_RS11900
DM55_RS11900	PF08340	DM55_RS11900
DM55_RS11905	PF00625	Guanylate kinase
DM55_RS11910	PF01192	RNA polymerase Rpb6
DM55_RS11915	PF02824	TGS domain
DM55_RS11915	PF04607	Region found in RelA / SpoT proteins
DM55_RS11915	PF13291	ACT domain
DM55_RS11915	PF13328	HD domain
DM55_RS11930	PF01272	Transcription elongation factor, GreA/GreB, C-term
DM55_RS11930	PF03449	Transcription elongation factor, N-terminal
DM55_RS11945	PF13276	DM55_RS11945
DM55_RS11945	PF13683	DM55_RS11945
DM55_RS11950	PF01527	Transposase
DM55_RS11960	PF13525	Outer membrane lipoprotein
DM55_RS11960	PF16331	DM55_RS11960
DM55_RS11965	PF00691	OmpA family
DM55_RS11970	PF04052	TolB amino-terminal domain
DM55_RS11970	PF07676	WD40-like Beta Propeller Repeat
DM55_RS11975	PF13103	TonB C terminal
DM55_RS11980	PF02472	Biopolymer transport protein ExbD/TolR
DM55_RS11985	PF01618	DM55_RS11985
DM55_RS11990	PF03061	Thioesterase superfamily
DM55_RS11995	PF00106	short chain dehydrogenase
DM55_RS12000	PF00464	Serine hydroxymethyltransferase
DM55_RS12005	PF03477	ATP cone domain
DM55_RS12010	PF12019	Type II transport protein GspH
DM55_RS12020	PF16074	DM55_RS12020
DM55_RS12030	PF13633	Prokaryotic N-terminal methylation site
DM55_RS12035	PF11780	DM55_RS12035
DM55_RS12040	PF07332	DM55_RS12040
DM55_RS12045	PF05957	DM55_RS12045
DM55_RS12050	PF00578	AhpC/TSA family
DM55_RS12050	PF10417	C-terminal domain of 1-Cys peroxiredoxin
DM55_RS12060	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS12060	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS12060	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS12065	PF01614	Bacterial transcriptional regulator
DM55_RS12065	PF09339	IclR helix-turn-helix domain
DM55_RS12070	PF04828	Glutathione-dependent formaldehyde-activating enzyme
DM55_RS12075	PF00563	EAL domain
DM55_RS12085	PF01494	FAD binding domain
DM55_RS12090	PF10932	DM55_RS12090
DM55_RS12095	PF07690	Major Facilitator Superfamily
DM55_RS12100	PF04209	homogentisate 1,2-dioxygenase
DM55_RS12105	PF01557	Fumarylacetoacetate (FAA) hydrolase family
DM55_RS12105	PF09298	Fumarylacetoacetase N-terminal
DM55_RS12110	PF07690	Major Facilitator Superfamily
DM55_RS12115	PF07690	Major Facilitator Superfamily
DM55_RS12120	PF00881	Nitroreductase family
DM55_RS12125	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
DM55_RS12125	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
DM55_RS12130	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS12130	PF03466	LysR substrate binding domain
DM55_RS12135	PF00266	Aminotransferase class-V
DM55_RS12140	PF12833	Helix-turn-helix domain
DM55_RS12145	PF00892	EamA-like transporter family
DM55_RS12150	PF07690	Major Facilitator Superfamily
DM55_RS12155	PF00111	2Fe-2S iron-sulfur cluster binding domain
DM55_RS12155	PF00941	FAD binding domain in molybdopterin dehydrogenase
DM55_RS12155	PF01799	[2Fe-2S] binding domain
DM55_RS12155	PF03450	CO dehydrogenase flavoprotein C-terminal domain
DM55_RS12160	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
DM55_RS12160	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
DM55_RS12165	PF13531	Bacterial extracellular solute-binding protein
DM55_RS12170	PF13474	SnoaL-like domain
DM55_RS12175	PF00593	TonB dependent receptor
DM55_RS12175	PF07715	TonB-dependent Receptor Plug Domain
DM55_RS12180	PF00005	ABC transporter
DM55_RS12185	PF01497	Periplasmic binding protein
DM55_RS12195	PF01032	FecCD transport family
DM55_RS12200	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS12200	PF03466	LysR substrate binding domain
DM55_RS12205	PF01323	DSBA-like thioredoxin domain
DM55_RS12210	PF16868	DM55_RS12210
DM55_RS12215	PF04972	BON domain
DM55_RS12220	PF10605	DM55_RS12220
DM55_RS12225	PF00450	Serine carboxypeptidase
DM55_RS12230	PF01925	DM55_RS12230
DM55_RS12235	PF07690	Major Facilitator Superfamily
DM55_RS12240	PF03009	Glycerophosphoryl diester phosphodiesterase family
DM55_RS12250	PF01810	DM55_RS12250
DM55_RS12255	PF13673	Acetyltransferase (GNAT) domain
DM55_RS12260	PF01381	Helix-turn-helix
DM55_RS12265	PF00753	Metallo-beta-lactamase superfamily
DM55_RS12270	PF01638	HxlR-like helix-turn-helix
DM55_RS12275	PF11170	DM55_RS12275
DM55_RS12280	PF11170	DM55_RS12280
DM55_RS12285	PF03922	OmpW family
DM55_RS12300	PF00107	Zinc-binding dehydrogenase
DM55_RS12300	PF08240	Alcohol dehydrogenase GroES-like domain
DM55_RS12305	PF01638	HxlR-like helix-turn-helix
DM55_RS12315	PF00166	Chaperonin 10 Kd subunit
DM55_RS12320	PF00118	TCP-1/cpn60 chaperonin family
DM55_RS12325	PF08543	Phosphomethylpyrimidine kinase
DM55_RS12330	PF00301	Rubredoxin
DM55_RS12340	PF02622	Uncharacterized ACR, COG1678
DM55_RS12345	PF03652	Uncharacterised protein family (UPF0081)
DM55_RS12350	PF00156	Phosphoribosyl transferase domain
DM55_RS12355	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
DM55_RS12355	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
DM55_RS12360	PF01979	Amidohydrolase family
DM55_RS12365	PF01553	Acyltransferase
DM55_RS12370	PF00149	Calcineurin-like phosphoesterase
DM55_RS12375	PF16363	DM55_RS12375
DM55_RS12380	PF00483	Nucleotidyl transferase
DM55_RS12385	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
DM55_RS12390	PF04321	RmlD substrate binding domain
DM55_RS12395	PF01061	DM55_RS12395
DM55_RS12400	PF00005	ABC transporter
DM55_RS12400	PF14524	Wzt C-terminal domain
DM55_RS12405	PF01757	DM55_RS12405
DM55_RS12410	PF01370	NAD dependent epimerase/dehydratase family
DM55_RS12415	PF00535	Glycosyl transferase family 2
DM55_RS12420	PF00535	Glycosyl transferase family 2
DM55_RS12420	PF13489	Methyltransferase domain
DM55_RS12425	PF00535	Glycosyl transferase family 2
DM55_RS12425	PF13641	Glycosyltransferase like family 2
DM55_RS12430	PF13641	Glycosyltransferase like family 2
DM55_RS12435	PF01370	NAD dependent epimerase/dehydratase family
DM55_RS12440	PF00953	Glycosyl transferase family 4
DM55_RS12445	PF02719	Polysaccharide biosynthesis protein
DM55_RS12445	PF13727	CoA-binding domain
DM55_RS12450	PF13276	DM55_RS12450
DM55_RS12450	PF13683	DM55_RS12450
DM55_RS12460	PF02653	DM55_RS12460
DM55_RS12465	PF02653	DM55_RS12465
DM55_RS12470	PF00005	ABC transporter
DM55_RS12470	PF12399	Branched-chain amino acid ATP-binding cassette transporter
DM55_RS12475	PF00005	ABC transporter
DM55_RS12480	PF10042	DM55_RS12480
DM55_RS12485	PF00583	Acetyltransferase (GNAT) family
DM55_RS12490	PF00202	Aminotransferase class-III
DM55_RS12495	PF00111	2Fe-2S iron-sulfur cluster binding domain
DM55_RS12495	PF00175	Oxidoreductase NAD-binding domain
DM55_RS12495	PF00970	Oxidoreductase FAD-binding domain
DM55_RS12500	PF02254	TrkA-N domain
DM55_RS12510	PF00849	RNA pseudouridylate synthase
DM55_RS12510	PF01479	S4 domain
DM55_RS12515	PF04234	CopC domain
DM55_RS12520	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS12520	PF03466	LysR substrate binding domain
DM55_RS12525	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS12525	PF03466	LysR substrate binding domain
DM55_RS12530	PF00561	alpha/beta hydrolase fold
DM55_RS12535	PF03473	MOSC domain
DM55_RS12535	PF03475	3-alpha domain
DM55_RS12540	PF00701	Dihydrodipicolinate synthetase family
DM55_RS12545	PF00596	Class II Aldolase and Adducin N-terminal domain
DM55_RS12550	PF01381	Helix-turn-helix
DM55_RS12550	PF07883	Cupin domain
DM55_RS12560	PF13276	DM55_RS12560
DM55_RS12560	PF13683	DM55_RS12560
DM55_RS12565	PF01527	Transposase
DM55_RS12570	PF00155	Aminotransferase class I and II
DM55_RS12575	PF00892	EamA-like transporter family
DM55_RS12580	PF13468	Glyoxalase-like domain
DM55_RS12585	PF00155	Aminotransferase class I and II
DM55_RS12585	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS12590	PF00183	Hsp90 protein
DM55_RS12590	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS12595	PF04345	Chorismate lyase
DM55_RS12600	PF03167	Uracil DNA glycosylase superfamily
DM55_RS12610	PF11755	DM55_RS12610
DM55_RS12620	PF06983	3-demethylubiquinone-9 3-methyltransferase
DM55_RS12630	PF03594	DM55_RS12630
DM55_RS12635	PF05762	VWA domain containing CoxE-like protein
DM55_RS12640	PF00004	ATPase family associated with various cellular activities (AAA)
DM55_RS12645	PF00034	Cytochrome c
DM55_RS12650	PF00034	Cytochrome c
DM55_RS12655	PF01610	DM55_RS12655
DM55_RS12655	PF13542	DM55_RS12655
DM55_RS12655	PF14690	DM55_RS12655
DM55_RS12660	PF08897	DM55_RS12660
DM55_RS12665	PF00892	EamA-like transporter family
DM55_RS12670	PF00633	Helix-hairpin-helix motif
DM55_RS12670	PF00730	HhH-GPD superfamily base excision DNA repair protein
DM55_RS12675	PF04060	Putative Fe-S cluster
DM55_RS12675	PF14697	4Fe-4S dicluster domain
DM55_RS12680	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS12680	PF14514	Transcriptional regulator, TetR, C-terminal
DM55_RS12685	PF06850	DM55_RS12685
DM55_RS12690	PF00723	Glycosyl hydrolases family 15
DM55_RS12695	PF10282	Lactonase, 7-bladed beta-propeller
DM55_RS12705	PF01580	FtsK/SpoIIIE family
DM55_RS12705	PF09397	Ftsk gamma domain
DM55_RS12710	PF03724	META domain
DM55_RS12720	PF01370	NAD dependent epimerase/dehydratase family
DM55_RS12720	PF02222	ATP-grasp domain
DM55_RS12730	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
DM55_RS12735	PF00270	DEAD/DEAH box helicase
DM55_RS12735	PF00271	Helicase conserved C-terminal domain
DM55_RS12740	PF00749	tRNA synthetases class I (E and Q), catalytic domain
DM55_RS12755	PF01336	OB-fold nucleic acid binding domain
DM55_RS12755	PF02811	PHP domain
DM55_RS12755	PF07733	Bacterial DNA polymerase III alpha subunit
DM55_RS12755	PF14579	Helix-hairpin-helix motif
DM55_RS12760	PF00005	ABC transporter
DM55_RS12760	PF00664	ABC transporter transmembrane region
DM55_RS12765	PF00534	Glycosyl transferases group 1
DM55_RS12765	PF13439	Glycosyltransferase Family 4
DM55_RS12770	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
DM55_RS12775	PF04932	DM55_RS12775
DM55_RS12780	PF00534	Glycosyl transferases group 1
DM55_RS12785	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
DM55_RS12790	PF00535	Glycosyl transferase family 2
DM55_RS12795	PF11776	Domain of unknown function (DUF3315)
DM55_RS12800	PF13515	DM55_RS12800
DM55_RS12805	PF07690	Major Facilitator Superfamily
DM55_RS12815	PF02627	Carboxymuconolactone decarboxylase family
DM55_RS12820	PF04542	Sigma-70 region 2
DM55_RS12820	PF08281	Sigma-70, region 4
DM55_RS12850	PF03283	DM55_RS12850
DM55_RS12855	PF00860	Permease family
DM55_RS12860	PF10150	Ribonuclease E/G family
DM55_RS12865	PF02545	Maf-like protein
DM55_RS12870	PF02590	Predicted SPOUT methyltransferase
DM55_RS12875	PF02410	Oligomerisation domain
DM55_RS12880	PF01467	Cytidylyltransferase
DM55_RS12885	PF01218	Coproporphyrinogen III oxidase
DM55_RS12890	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
DM55_RS12890	PF02843	Phosphoribosylglycinamide synthetase, C domain
DM55_RS12890	PF02844	Phosphoribosylglycinamide synthetase, N domain
DM55_RS12895	PF01709	Transcriptional regulator
DM55_RS12900	PF14681	Uracil phosphoribosyltransferase
DM55_RS12905	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS12910	PF02142	MGS-like domain
DM55_RS12915	PF00107	Zinc-binding dehydrogenase
DM55_RS12915	PF08240	Alcohol dehydrogenase GroES-like domain
DM55_RS12920	PF09604	DM55_RS12920
DM55_RS12925	PF03814	DM55_RS12925
DM55_RS12930	PF00122	E1-E2 ATPase
DM55_RS12930	PF00702	haloacid dehalogenase-like hydrolase
DM55_RS12935	PF02669	DM55_RS12935
DM55_RS12945	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS12945	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS12945	PF02702	Osmosensitive K+ channel His kinase sensor domain
DM55_RS12945	PF13492	GAF domain
DM55_RS12945	PF13493	Domain of unknown function (DUF4118)
DM55_RS12950	PF00072	Response regulator receiver domain
DM55_RS12950	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS12955	PF03891	DM55_RS12955
DM55_RS12960	PF00893	Small Multidrug Resistance protein
DM55_RS12965	PF13548	DM55_RS12965
DM55_RS12975	PF01152	Bacterial-like globin
DM55_RS12980	PF01411	tRNA synthetases class II (A)
DM55_RS12980	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
DM55_RS12985	PF06041	Bacterial protein of unknown function (DUF924)
DM55_RS12990	PF01425	Amidase
DM55_RS12995	PF01610	DM55_RS12995
DM55_RS12995	PF13542	DM55_RS12995
DM55_RS12995	PF14690	DM55_RS12995
DM55_RS13000	PF07690	Major Facilitator Superfamily
DM55_RS13010	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS13015	PF03641	Possible lysine decarboxylase
DM55_RS13020	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS13020	PF13972	Bacterial transcriptional repressor
DM55_RS13025	PF01219	Prokaryotic diacylglycerol kinase
DM55_RS13030	PF00534	Glycosyl transferases group 1
DM55_RS13030	PF13439	Glycosyltransferase Family 4
DM55_RS13035	PF12850	Calcineurin-like phosphoesterase superfamily domain
DM55_RS13040	PF06271	DM55_RS13040
DM55_RS13045	PF11304	DM55_RS13045
DM55_RS13050	PF12279	DM55_RS13050
DM55_RS13055	PF08281	Sigma-70, region 4
DM55_RS13060	PF00205	Thiamine pyrophosphate enzyme, central domain
DM55_RS13060	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
DM55_RS13060	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
DM55_RS13065	PF10369	Small subunit of acetolactate synthase
DM55_RS13065	PF13710	ACT domain
DM55_RS13070	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
DM55_RS13070	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
DM55_RS13075	PF02666	DM55_RS13075
DM55_RS13080	PF01066	CDP-alcohol phosphatidyltransferase
DM55_RS13085	PF01527	Transposase
DM55_RS13090	PF13276	DM55_RS13090
DM55_RS13090	PF13683	DM55_RS13090
DM55_RS13100	PF00916	DM55_RS13100
DM55_RS13105	PF00484	Carbonic anhydrase
DM55_RS13115	PF13458	Periplasmic binding protein
DM55_RS13120	PF00312	Ribosomal protein S15
DM55_RS13125	PF00013	KH domain
DM55_RS13125	PF00575	S1 RNA binding domain
DM55_RS13125	PF01138	3' exoribonuclease family, domain 1
DM55_RS13125	PF03725	3' exoribonuclease family, domain 2
DM55_RS13125	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
DM55_RS13130	PF00107	Zinc-binding dehydrogenase
DM55_RS13135	PF00121	Triosephosphate isomerase
DM55_RS13140	PF03840	Preprotein translocase SecG subunit
DM55_RS13150	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
DM55_RS13155	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
DM55_RS13160	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
DM55_RS13165	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
DM55_RS13170	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
DM55_RS13175	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
DM55_RS13175	PF10531	SLBB domain
DM55_RS13175	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
DM55_RS13180	PF00384	Molybdopterin oxidoreductase
DM55_RS13180	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
DM55_RS13180	PF13510	2Fe-2S iron-sulfur cluster binding domain
DM55_RS13185	PF00146	NADH dehydrogenase
DM55_RS13190	PF12838	4Fe-4S dicluster domain
DM55_RS13195	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
DM55_RS13200	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
DM55_RS13205	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
DM55_RS13205	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
DM55_RS13210	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
DM55_RS13210	PF01059	DM55_RS13210
DM55_RS13215	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
DM55_RS13220	PF10993	DM55_RS13220
DM55_RS13225	PF00293	NUDIX domain
DM55_RS13230	PF06676	DM55_RS13230
DM55_RS13235	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS13235	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS13235	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS13240	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS13240	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS13245	PF01575	MaoC like domain
DM55_RS13250	PF01575	MaoC like domain
DM55_RS13255	PF13229	Right handed beta helix region
DM55_RS13265	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS13265	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS13265	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS13270	PF01636	Phosphotransferase enzyme family
DM55_RS13275	PF00300	Histidine phosphatase superfamily (branch 1)
DM55_RS13280	PF00378	Enoyl-CoA hydratase/isomerase family
DM55_RS13285	PF13410	Glutathione S-transferase, C-terminal domain
DM55_RS13285	PF13417	Glutathione S-transferase, N-terminal domain
DM55_RS13290	PF00155	Aminotransferase class I and II
DM55_RS13295	PF13470	DM55_RS13295
DM55_RS13300	PF03883	DM55_RS13300
DM55_RS13305	PF00246	Zinc carboxypeptidase
DM55_RS13315	PF01891	Cobalt uptake substrate-specific transmembrane region
DM55_RS13320	PF00196	Bacterial regulatory proteins, luxR family
DM55_RS13320	PF06490	DM55_RS13320
DM55_RS13325	PF11062	DM55_RS13325
DM55_RS13345	PF09339	IclR helix-turn-helix domain
DM55_RS13350	PF05787	Bacterial protein of unknown function (DUF839)
DM55_RS13360	PF02082	Transcriptional regulator
DM55_RS13365	PF13460	NADH(P)-binding
DM55_RS13375	PF01037	AsnC family
DM55_RS13375	PF13404	AsnC-type helix-turn-helix domain
DM55_RS13380	PF00005	ABC transporter
DM55_RS13385	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS13390	PF13343	Bacterial extracellular solute-binding protein
DM55_RS13400	PF00324	Amino acid permease
DM55_RS13405	PF12805	DM55_RS13405
DM55_RS13405	PF13515	DM55_RS13405
DM55_RS13420	PF04257	Exodeoxyribonuclease V, gamma subunit
DM55_RS13425	PF00580	UvrD/REP helicase N-terminal domain
DM55_RS13425	PF12705	PD-(D/E)XK nuclease superfamily
DM55_RS13425	PF13361	UvrD-like helicase C-terminal domain
DM55_RS13430	PF13538	UvrD-like helicase C-terminal domain
DM55_RS13430	PF13604	AAA domain
DM55_RS13435	PF00472	RF-1 domain
DM55_RS13440	PF00563	EAL domain
DM55_RS13445	PF00892	EamA-like transporter family
DM55_RS13455	PF05433	DM55_RS13455
DM55_RS13460	PF01527	Transposase
DM55_RS13465	PF13276	DM55_RS13465
DM55_RS13465	PF13683	DM55_RS13465
DM55_RS13470	PF01964	ThiC family
DM55_RS13470	PF13667	ThiC-associated domain
DM55_RS13480	PF06764	Protein of unknown function (DUF1223)
DM55_RS13485	PF01292	Prokaryotic cytochrome b561
DM55_RS13490	PF00174	Oxidoreductase molybdopterin binding domain
DM55_RS13500	PF00892	EamA-like transporter family
DM55_RS13505	PF07690	Major Facilitator Superfamily
DM55_RS13510	PF03988	DM55_RS13510
DM55_RS13525	PF00149	Calcineurin-like phosphoesterase
DM55_RS13530	PF00005	ABC transporter
DM55_RS13530	PF08402	TOBE domain
DM55_RS13535	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS13550	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS13555	PF13343	Bacterial extracellular solute-binding protein
DM55_RS13560	PF00356	Bacterial regulatory proteins, lacI family
DM55_RS13560	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
DM55_RS13580	PF00990	GGDEF domain
DM55_RS13590	PF01527	Transposase
DM55_RS13595	PF07040	DM55_RS13595
DM55_RS13600	PF09948	DM55_RS13600
DM55_RS13605	PF04299	Putative FMN-binding domain
DM55_RS13610	PF00155	Aminotransferase class I and II
DM55_RS13610	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS13620	PF01037	AsnC family
DM55_RS13620	PF13412	Winged helix-turn-helix DNA-binding
DM55_RS13625	PF01380	SIS domain
DM55_RS13625	PF13537	Glutamine amidotransferase domain
DM55_RS13630	PF03055	Retinal pigment epithelial membrane protein
DM55_RS13635	PF09998	DM55_RS13635
DM55_RS13640	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS13640	PF03466	LysR substrate binding domain
DM55_RS13645	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS13650	PF10001	DM55_RS13650
DM55_RS13655	PF06073	DM55_RS13655
DM55_RS13660	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
DM55_RS13660	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
DM55_RS13665	PF11174	DM55_RS13665
DM55_RS13670	PF00155	Aminotransferase class I and II
DM55_RS13670	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS13685	PF00011	Hsp20/alpha crystallin family
DM55_RS13690	PF00011	Hsp20/alpha crystallin family
DM55_RS13695	PF03860	Domain of Unknown Function (DUF326)
DM55_RS13705	PF00821	Phosphoenolpyruvate carboxykinase
DM55_RS13710	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
DM55_RS13710	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
DM55_RS13715	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS13715	PF03466	LysR substrate binding domain
DM55_RS13720	PF03817	DM55_RS13720
DM55_RS13725	PF03818	DM55_RS13725
DM55_RS13735	PF16957	DM55_RS13735
DM55_RS13740	PF06857	DM55_RS13740
DM55_RS13745	PF01039	Carboxyl transferase domain
DM55_RS13750	PF06833	Malonate decarboxylase gamma subunit (MdcE)
DM55_RS13755	PF10620	DM55_RS13755
DM55_RS13760	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
DM55_RS13765	PF00698	Acyl transferase domain
DM55_RS13770	PF13091	PLD-like domain
DM55_RS13780	PF12146	Putative lysophospholipase
DM55_RS13785	PF13417	Glutathione S-transferase, N-terminal domain
DM55_RS13795	PF01527	Transposase
DM55_RS13800	PF13410	Glutathione S-transferase, C-terminal domain
DM55_RS13810	PF00083	Sugar (and other) transporter
DM55_RS13815	PF02694	DM55_RS13815
DM55_RS13820	PF00929	Exonuclease
DM55_RS13825	PF00075	RNase H
DM55_RS13830	PF08241	Methyltransferase domain
DM55_RS13835	PF00753	Metallo-beta-lactamase superfamily
DM55_RS13835	PF16123	DM55_RS13835
DM55_RS13840	PF01464	Transglycosylase SLT domain
DM55_RS13840	PF01476	LysM domain
DM55_RS13845	PF07690	Major Facilitator Superfamily
DM55_RS13855	PF12625	DM55_RS13855
DM55_RS13855	PF12833	Helix-turn-helix domain
DM55_RS13860	PF00117	Glutamine amidotransferase class-I
DM55_RS13860	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
DM55_RS13865	PF01810	DM55_RS13865
DM55_RS13870	PF02142	MGS-like domain
DM55_RS13870	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
DM55_RS13870	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
DM55_RS13875	PF01272	Transcription elongation factor, GreA/GreB, C-term
DM55_RS13875	PF03449	Transcription elongation factor, N-terminal
DM55_RS13880	PF13664	DM55_RS13880
DM55_RS13885	PF01985	CRS1 / YhbY (CRM) domain
DM55_RS13890	PF01728	FtsJ-like methyltransferase
DM55_RS13895	PF00004	ATPase family associated with various cellular activities (AAA)
DM55_RS13895	PF01434	Peptidase family M41
DM55_RS13895	PF06480	FtsH Extracellular
DM55_RS13900	PF00809	Pterin binding enzyme
DM55_RS13905	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
DM55_RS13905	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
DM55_RS13905	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
DM55_RS13905	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
DM55_RS13910	PF12849	PBP superfamily domain
DM55_RS13915	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS13920	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS13925	PF00005	ABC transporter
DM55_RS13930	PF01895	PhoU domain
DM55_RS13935	PF00072	Response regulator receiver domain
DM55_RS13935	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS13940	PF00512	His Kinase A (phospho-acceptor) domain
DM55_RS13940	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DM55_RS13940	PF11808	DM55_RS13940
DM55_RS13945	PF02503	Polyphosphate kinase middle domain
DM55_RS13945	PF13089	Polyphosphate kinase N-terminal domain
DM55_RS13945	PF13090	Polyphosphate kinase C-terminal domain
DM55_RS13950	PF02541	Ppx/GppA phosphatase family
DM55_RS13960	PF14378	DM55_RS13960
DM55_RS13980	PF10908	DM55_RS13980
DM55_RS13990	PF00300	Histidine phosphatase superfamily (branch 1)
DM55_RS13995	PF13444	Acetyltransferase (GNAT) domain
DM55_RS14010	PF01554	MatE
DM55_RS14015	PF10052	Protein of unknown function (DUF2288)
DM55_RS14020	PF00501	AMP-binding enzyme
DM55_RS14020	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS14025	PF01476	LysM domain
DM55_RS14025	PF01551	Peptidase family M23
DM55_RS14035	PF01527	Transposase
DM55_RS14035	PF13276	DM55_RS14035
DM55_RS14035	PF13683	DM55_RS14035
DM55_RS14040	PF15648	DM55_RS14040
DM55_RS14050	PF13503	DM55_RS14050
DM55_RS14055	PF05488	PAAR motif
DM55_RS14060	PF04072	Leucine carboxyl methyltransferase
DM55_RS14060	PF13411	MerR HTH family regulatory protein
DM55_RS14065	PF00155	Aminotransferase class I and II
DM55_RS14065	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS14070	PF12893	Putative lumazine-binding
DM55_RS14080	PF00128	Alpha amylase, catalytic domain
DM55_RS14085	PF02446	4-alpha-glucanotransferase
DM55_RS14090	PF00128	Alpha amylase, catalytic domain
DM55_RS14090	PF11941	Domain of unknown function (DUF3459)
DM55_RS14095	PF00128	Alpha amylase, catalytic domain
DM55_RS14095	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
DM55_RS14105	PF00128	Alpha amylase, catalytic domain
DM55_RS14105	PF16657	DM55_RS14105
DM55_RS14110	PF00128	Alpha amylase, catalytic domain
DM55_RS14110	PF11896	Domain of unknown function (DUF3416)
DM55_RS14120	PF10503	Esterase PHB depolymerase
DM55_RS14145	PF12891	Glycoside hydrolase family 44
DM55_RS14150	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS14150	PF03466	LysR substrate binding domain
DM55_RS14155	PF00072	Response regulator receiver domain
DM55_RS14155	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS14160	PF13127	DM55_RS14160
DM55_RS14165	PF05666	DM55_RS14165
DM55_RS14180	PF00072	Response regulator receiver domain
DM55_RS14180	PF00486	Transcriptional regulatory protein, C terminal
DM55_RS14190	PF03895	YadA-like C-terminal region
DM55_RS14190	PF05658	Head domain of trimeric autotransporter adhesin
DM55_RS14190	PF05662	Coiled stalk of trimeric autotransporter adhesin
DM55_RS14190	PF13018	DM55_RS14190
DM55_RS14195	PF00691	OmpA family
DM55_RS14205	PF00816	H-NS histone family
DM55_RS14215	PF02630	SCO1/SenC
DM55_RS14225	PF00652	Ricin-type beta-trefoil lectin domain
DM55_RS14225	PF09118	Domain of unknown function (DUF1929)
DM55_RS14225	PF14200	Ricin-type beta-trefoil lectin domain-like
DM55_RS14230	PF07859	alpha/beta hydrolase fold
DM55_RS14245	PF05947	DM55_RS14245
DM55_RS14255	PF05488	PAAR motif
DM55_RS14260	PF05954	Phage late control gene D protein (GPD)
DM55_RS14260	PF10106	DM55_RS14260
DM55_RS14260	PF13296	DM55_RS14260
DM55_RS14265	PF13503	DM55_RS14265
DM55_RS14270	PF13276	DM55_RS14270
DM55_RS14270	PF13683	DM55_RS14270
DM55_RS14280	PF13411	MerR HTH family regulatory protein
DM55_RS14290	PF02321	Outer membrane efflux protein
DM55_RS14295	PF00873	AcrB/AcrD/AcrF family
DM55_RS14300	PF16576	DM55_RS14300
DM55_RS14305	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS14305	PF13977	Bacterial transcriptional repressor
DM55_RS14310	PF00571	CBS domain
DM55_RS14310	PF00654	Voltage gated chloride channel
DM55_RS14315	PF03601	DM55_RS14315
DM55_RS14320	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS14320	PF03466	LysR substrate binding domain
DM55_RS14325	PF13630	DM55_RS14325
DM55_RS14330	PF01261	Xylose isomerase-like TIM barrel
DM55_RS14335	PF00294	pfkB family carbohydrate kinase
DM55_RS14340	PF07690	Major Facilitator Superfamily
DM55_RS14350	PF00356	Bacterial regulatory proteins, lacI family
DM55_RS14350	PF13377	Periplasmic binding protein-like domain
DM55_RS14355	PF10086	DM55_RS14355
DM55_RS14360	PF11226	DM55_RS14360
DM55_RS14370	PF14083	DM55_RS14370
DM55_RS14375	PF10503	Esterase PHB depolymerase
DM55_RS14380	PF07813	LTXXQ motif family protein
DM55_RS14385	PF00501	AMP-binding enzyme
DM55_RS14385	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS14390	PF07993	Male sterility protein
DM55_RS14405	PF01037	AsnC family
DM55_RS14405	PF13404	AsnC-type helix-turn-helix domain
DM55_RS14420	PF03435	Saccharopine dehydrogenase
DM55_RS14420	PF16653	DM55_RS14420
DM55_RS14430	PF13671	AAA domain
DM55_RS14435	PF08173	DM55_RS14435
DM55_RS14440	PF01544	CorA-like Mg2+ transporter protein
DM55_RS14445	PF03795	YCII-related domain
DM55_RS14465	PF00924	Mechanosensitive ion channel
DM55_RS14465	PF12607	DM55_RS14465
DM55_RS14470	PF04205	FMN-binding domain
DM55_RS14470	PF12801	DM55_RS14470
DM55_RS14475	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
DM55_RS14490	PF05573	NosL
DM55_RS14495	PF12679	DM55_RS14495
DM55_RS14500	PF00005	ABC transporter
DM55_RS14505	PF05048	Periplasmic copper-binding protein (NosD)
DM55_RS14510	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
DM55_RS14515	PF02424	ApbE family
DM55_RS14520	PF00005	ABC transporter
DM55_RS14525	PF01061	DM55_RS14525
DM55_RS14530	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS14530	PF00672	HAMP domain
DM55_RS14540	PF02733	Dak1 domain
DM55_RS14540	PF02734	DAK2 domain
DM55_RS14550	PF00355	Rieske [2Fe-2S] domain
DM55_RS14555	PF00999	Sodium/hydrogen exchanger family
DM55_RS14560	PF04820	Tryptophan halogenase
DM55_RS14590	PF10503	Esterase PHB depolymerase
DM55_RS14600	PF08670	DM55_RS14600
DM55_RS14605	PF01610	DM55_RS14605
DM55_RS14605	PF13542	DM55_RS14605
DM55_RS14605	PF14690	DM55_RS14605
DM55_RS14620	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
DM55_RS14620	PF02753	Pili assembly chaperone PapD, C-terminal domain
DM55_RS14625	PF00577	Outer membrane usher protein
DM55_RS14625	PF13953	PapC C-terminal domain
DM55_RS14625	PF13954	PapC N-terminal domain
DM55_RS14630	PF00419	Fimbrial protein
DM55_RS14655	PF03895	YadA-like C-terminal region
DM55_RS14670	PF00072	Response regulator receiver domain
DM55_RS14670	PF00196	Bacterial regulatory proteins, luxR family
DM55_RS14680	PF01527	Transposase
DM55_RS14685	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS14690	PF00497	Bacterial extracellular solute-binding proteins, family 3
DM55_RS14695	PF01180	Dihydroorotate dehydrogenase
DM55_RS14700	PF04376	DM55_RS14700
DM55_RS14700	PF04377	DM55_RS14700
DM55_RS14705	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
DM55_RS14710	PF00293	NUDIX domain
DM55_RS14710	PF14803	Nudix N-terminal
DM55_RS14720	PF03928	Domain of unknown function (DUF336)
DM55_RS14725	PF00893	Small Multidrug Resistance protein
DM55_RS14730	PF16113	DM55_RS14730
DM55_RS14740	PF00296	Luciferase-like monooxygenase
DM55_RS14745	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS14750	PF00005	ABC transporter
DM55_RS14755	PF03459	TOBE domain
DM55_RS14770	PF01610	DM55_RS14770
DM55_RS14780	PF13276	DM55_RS14780
DM55_RS14780	PF13683	DM55_RS14780
DM55_RS14785	PF06798	DM55_RS14785
DM55_RS14785	PF08298	PrkA AAA domain
DM55_RS14790	PF04285	DM55_RS14790
DM55_RS14795	PF04293	DM55_RS14795
DM55_RS14800	PF07690	Major Facilitator Superfamily
DM55_RS14805	PF13379	NMT1-like family
DM55_RS14810	PF01391	Collagen triple helix repeat (20 copies)
DM55_RS14815	PF00005	ABC transporter
DM55_RS14820	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS14825	PF04964	DM55_RS14825
DM55_RS14830	PF01478	Type IV leader peptidase family
DM55_RS14835	PF16976	DM55_RS14835
DM55_RS14840	PF00263	DM55_RS14840
DM55_RS14840	PF13629	DM55_RS14840
DM55_RS14845	PF09476	DM55_RS14845
DM55_RS14850	PF13614	AAA domain
DM55_RS14855	PF00437	Type II/IV secretion system protein
DM55_RS14860	PF00482	Type II secretion system (T2SS), protein F
DM55_RS14865	PF00482	Type II secretion system (T2SS), protein F
DM55_RS14870	PF13432	Tetratricopeptide repeat
DM55_RS14875	PF07811	DM55_RS14875
DM55_RS14880	PF07811	DM55_RS14880
DM55_RS14880	PF09977	DM55_RS14880
DM55_RS14885	PF00497	Bacterial extracellular solute-binding proteins, family 3
DM55_RS14900	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS14905	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS14910	PF01551	Peptidase family M23
DM55_RS14915	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS14915	PF08361	MAATS-type transcriptional repressor, C-terminal region
DM55_RS14920	PF00529	HlyD family secretion protein
DM55_RS14920	PF16576	DM55_RS14920
DM55_RS14925	PF00873	AcrB/AcrD/AcrF family
DM55_RS14925	PF13953	PapC C-terminal domain
DM55_RS14930	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
DM55_RS14930	PF02753	Pili assembly chaperone PapD, C-terminal domain
DM55_RS14935	PF00419	Fimbrial protein
DM55_RS14940	PF00005	ABC transporter
DM55_RS14950	PF01527	Transposase
DM55_RS14960	PF00733	Asparagine synthase
DM55_RS14965	PF13471	DM55_RS14965
DM55_RS14970	PF12833	Helix-turn-helix domain
DM55_RS14975	PF13407	Periplasmic binding protein domain
DM55_RS14980	PF00005	ABC transporter
DM55_RS14985	PF02653	DM55_RS14985
DM55_RS14990	PF00107	Zinc-binding dehydrogenase
DM55_RS14990	PF08240	Alcohol dehydrogenase GroES-like domain
DM55_RS14995	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
DM55_RS14995	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
DM55_RS15000	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS15010	PF04542	Sigma-70 region 2
DM55_RS15010	PF08281	Sigma-70, region 4
DM55_RS15015	PF03621	MbtH-like protein
DM55_RS15020	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
DM55_RS15025	PF00005	ABC transporter
DM55_RS15030	PF01032	FecCD transport family
DM55_RS15035	PF06276	Ferric iron reductase FhuF-like transporter
DM55_RS15035	PF11575	DM55_RS15035
DM55_RS15040	PF01497	Periplasmic binding protein
DM55_RS15045	PF09351	Domain of unknown function (DUF1993)
DM55_RS15050	PF00005	ABC transporter
DM55_RS15055	PF00501	AMP-binding enzyme
DM55_RS15055	PF00550	Phosphopantetheine attachment site
DM55_RS15055	PF00668	Condensation domain
DM55_RS15055	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS15055	PF13745	HxxPF-repeated domain
DM55_RS15060	PF00501	AMP-binding enzyme
DM55_RS15060	PF00550	Phosphopantetheine attachment site
DM55_RS15060	PF00668	Condensation domain
DM55_RS15060	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS15060	PF13745	HxxPF-repeated domain
DM55_RS15065	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
DM55_RS15070	PF00593	TonB dependent receptor
DM55_RS15070	PF07715	TonB-dependent Receptor Plug Domain
DM55_RS15075	PF00551	Formyl transferase
DM55_RS15085	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
DM55_RS15085	PF07685	CobB/CobQ-like glutamine amidotransferase domain
DM55_RS15090	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
DM55_RS15095	PF01890	Cobalamin synthesis G C-terminus
DM55_RS15100	PF03824	DM55_RS15100
DM55_RS15105	PF02492	CobW/HypB/UreG, nucleotide-binding domain
DM55_RS15105	PF07683	Cobalamin synthesis protein cobW C-terminal domain
DM55_RS15110	PF02514	DM55_RS15110
DM55_RS15120	PF07728	AAA domain (dynein-related subfamily)
DM55_RS15125	PF13519	von Willebrand factor type A domain
DM55_RS15130	PF02230	Phospholipase/Carboxylesterase
DM55_RS15140	PF00704	Glycosyl hydrolases family 18
DM55_RS15140	PF02839	Carbohydrate binding domain
DM55_RS15145	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
DM55_RS15145	PF11760	Cobalamin synthesis G N-terminal
DM55_RS15150	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
DM55_RS15155	PF02570	Precorrin-8X methylmutase
DM55_RS15160	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
DM55_RS15160	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
DM55_RS15165	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
DM55_RS15170	PF01888	CbiD
DM55_RS15175	PF02571	DM55_RS15175
DM55_RS15185	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
DM55_RS15190	PF02638	DM55_RS15190
DM55_RS15195	PF07690	Major Facilitator Superfamily
DM55_RS15200	PF12802	MarR family
DM55_RS15205	PF13458	Periplasmic binding protein
DM55_RS15210	PF12802	MarR family
DM55_RS15215	PF00043	Glutathione S-transferase, C-terminal domain
DM55_RS15215	PF02798	Glutathione S-transferase, N-terminal domain
DM55_RS15225	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS15225	PF03466	LysR substrate binding domain
DM55_RS15230	PF03928	Domain of unknown function (DUF336)
DM55_RS15235	PF00106	short chain dehydrogenase
DM55_RS15240	PF00696	Amino acid kinase family
DM55_RS15245	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
DM55_RS15245	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
DM55_RS15250	PF02274	Amidinotransferase
DM55_RS15255	PF13520	Amino acid permease
DM55_RS15265	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS15270	PF00005	ABC transporter
DM55_RS15275	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS15280	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
DM55_RS15285	PF13649	Methyltransferase domain
DM55_RS15290	PF07690	Major Facilitator Superfamily
DM55_RS15295	PF00501	AMP-binding enzyme
DM55_RS15295	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS15300	PF12085	DM55_RS15300
DM55_RS15310	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS15310	PF12729	DM55_RS15310
DM55_RS15315	PF01584	CheW-like domain
DM55_RS15325	PF02311	AraC-like ligand binding domain
DM55_RS15325	PF12833	Helix-turn-helix domain
DM55_RS15330	PF13609	Gram-negative porin
DM55_RS15340	PF00550	Phosphopantetheine attachment site
DM55_RS15340	PF00975	Thioesterase domain
DM55_RS15350	PF03621	MbtH-like protein
DM55_RS15355	PF13621	Cupin-like domain
DM55_RS15365	PF00155	Aminotransferase class I and II
DM55_RS15370	PF13276	DM55_RS15370
DM55_RS15370	PF13683	DM55_RS15370
DM55_RS15375	PF13333	DM55_RS15375
DM55_RS15380	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
DM55_RS15380	PF13450	NAD(P)-binding Rossmann-like domain
DM55_RS15385	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS15390	PF13279	Thioesterase-like superfamily
DM55_RS15400	PF00150	Cellulase (glycosyl hydrolase family 5)
DM55_RS15405	PF00196	Bacterial regulatory proteins, luxR family
DM55_RS15405	PF13426	PAS domain
DM55_RS15410	PF01144	Coenzyme A transferase
DM55_RS15415	PF01144	Coenzyme A transferase
DM55_RS15420	PF13561	Enoyl-(Acyl carrier protein) reductase
DM55_RS15425	PF01522	Polysaccharide deacetylase
DM55_RS15430	PF07366	SnoaL-like polyketide cyclase
DM55_RS15435	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS15435	PF03466	LysR substrate binding domain
DM55_RS15445	PF12697	Alpha/beta hydrolase family
DM55_RS15450	PF01042	Endoribonuclease L-PSP
DM55_RS15455	PF02824	TGS domain
DM55_RS15455	PF04607	Region found in RelA / SpoT proteins
DM55_RS15455	PF13291	ACT domain
DM55_RS15455	PF13328	HD domain
DM55_RS15465	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
DM55_RS15465	PF02824	TGS domain
DM55_RS15465	PF03129	Anticodon binding domain
DM55_RS15465	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
DM55_RS15470	PF00707	Translation initiation factor IF-3, C-terminal domain
DM55_RS15470	PF05198	Translation initiation factor IF-3, N-terminal domain
DM55_RS15475	PF01632	Ribosomal protein L35
DM55_RS15480	PF00453	Ribosomal protein L20
DM55_RS15485	PF01409	tRNA synthetases class II core domain (F)
DM55_RS15485	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
DM55_RS15490	PF01588	Putative tRNA binding domain
DM55_RS15490	PF03147	Ferredoxin-fold anticodon binding domain
DM55_RS15490	PF03483	B3/4 domain
DM55_RS15490	PF03484	tRNA synthetase B5 domain
DM55_RS15495	PF00216	Bacterial DNA-binding protein
DM55_RS15500	PF13411	MerR HTH family regulatory protein
DM55_RS15515	PF11925	DM55_RS15515
DM55_RS15520	PF11005	DM55_RS15520
DM55_RS15525	PF06804	NlpB/DapX lipoprotein
DM55_RS15530	PF13751	DM55_RS15530
DM55_RS15545	PF01610	DM55_RS15545
DM55_RS15550	PF03992	Antibiotic biosynthesis monooxygenase
DM55_RS15565	PF02698	DUF218 domain
DM55_RS15580	PF13340	DM55_RS15580
DM55_RS15585	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS15585	PF03466	LysR substrate binding domain
DM55_RS15590	PF04079	Putative transcriptional regulators (Ypuh-like)
DM55_RS15595	PF00849	RNA pseudouridylate synthase
DM55_RS15595	PF01479	S4 domain
DM55_RS15600	PF02576	Uncharacterised BCR, YhbC family COG0779
DM55_RS15605	PF00575	S1 RNA binding domain
DM55_RS15605	PF08529	NusA N-terminal domain
DM55_RS15605	PF13184	NusA-like KH domain
DM55_RS15605	PF14520	Helix-hairpin-helix domain
DM55_RS15610	PF00009	Elongation factor Tu GTP binding domain
DM55_RS15610	PF04760	Translation initiation factor IF-2, N-terminal region
DM55_RS15610	PF08364	DM55_RS15610
DM55_RS15610	PF11987	Translation-initiation factor 2
DM55_RS15615	PF02033	Ribosome-binding factor A
DM55_RS15620	PF01509	TruB family pseudouridylate synthase (N terminal domain)
DM55_RS15620	PF09157	Pseudouridine synthase II TruB, C-terminal
DM55_RS15620	PF16198	DM55_RS15620
DM55_RS15625	PF07690	Major Facilitator Superfamily
DM55_RS15630	PF00529	HlyD family secretion protein
DM55_RS15630	PF16576	DM55_RS15630
DM55_RS15635	PF02321	Outer membrane efflux protein
DM55_RS15640	PF12802	MarR family
DM55_RS15645	PF00009	Elongation factor Tu GTP binding domain
DM55_RS15645	PF00679	Elongation factor G C-terminus
DM55_RS15645	PF03144	Elongation factor Tu domain 2
DM55_RS15650	PF00676	Dehydrogenase E1 component
DM55_RS15650	PF02779	Transketolase, pyrimidine binding domain
DM55_RS15650	PF16078	DM55_RS15650
DM55_RS15650	PF16870	DM55_RS15650
DM55_RS15655	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
DM55_RS15655	PF00364	Biotin-requiring enzyme
DM55_RS15655	PF02817	e3 binding domain
DM55_RS15660	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
DM55_RS15660	PF07992	Pyridine nucleotide-disulphide oxidoreductase
DM55_RS15665	PF03969	AFG1-like ATPase
DM55_RS15670	PF13340	DM55_RS15670
DM55_RS15675	PF09917	Uncharacterized protein conserved in bacteria (DUF2147)
DM55_RS15680	PF08479	POTRA domain, ShlB-type
DM55_RS15685	PF15984	DM55_RS15685
DM55_RS15690	PF15984	DM55_RS15690
DM55_RS15695	PF13276	DM55_RS15695
DM55_RS15695	PF13683	DM55_RS15695
DM55_RS15700	PF01527	Transposase
DM55_RS15705	PF02543	Carbamoyltransferase
DM55_RS15705	PF16861	DM55_RS15705
DM55_RS15710	PF01804	Penicillin amidase
DM55_RS15720	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
DM55_RS15725	PF00392	Bacterial regulatory proteins, gntR family
DM55_RS15725	PF07729	FCD domain
DM55_RS15730	PF13276	DM55_RS15730
DM55_RS15730	PF13683	DM55_RS15730
DM55_RS15735	PF01527	Transposase
DM55_RS15740	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
DM55_RS15745	PF01471	Putative peptidoglycan binding domain
DM55_RS15745	PF01510	N-acetylmuramoyl-L-alanine amidase
DM55_RS15755	PF00588	SpoU rRNA Methylase family
DM55_RS15755	PF08032	RNA 2'-O ribose methyltransferase substrate binding
DM55_RS15760	PF00575	S1 RNA binding domain
DM55_RS15760	PF00773	RNB domain
DM55_RS15760	PF08206	Ribonuclease B OB domain
DM55_RS15770	PF05598	DM55_RS15770
DM55_RS15770	PF13751	DM55_RS15770
DM55_RS15780	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
DM55_RS15780	PF00672	HAMP domain
DM55_RS15785	PF04185	Phosphoesterase family
DM55_RS15790	PF02225	PA domain
DM55_RS15795	PF00916	DM55_RS15795
DM55_RS15795	PF01740	STAS domain
DM55_RS15800	PF08857	Putative ParB-like nuclease
DM55_RS15805	PF13302	Acetyltransferase (GNAT) domain
DM55_RS15815	PF00083	Sugar (and other) transporter
DM55_RS15815	PF07690	Major Facilitator Superfamily
DM55_RS15820	PF00440	Bacterial regulatory proteins, tetR family
DM55_RS15825	PF00501	AMP-binding enzyme
DM55_RS15825	PF13193	AMP-binding enzyme C-terminal domain
DM55_RS15830	PF07608	DM55_RS15830
DM55_RS15835	PF12778	DM55_RS15835
DM55_RS15845	PF11180	DM55_RS15845
DM55_RS15850	PF00158	Sigma-54 interaction domain
DM55_RS15850	PF02954	Bacterial regulatory protein, Fis family
DM55_RS15855	PF09977	DM55_RS15855
DM55_RS15860	PF12266	DM55_RS15860
DM55_RS15870	PF00482	Type II secretion system (T2SS), protein F
DM55_RS15875	PF00482	Type II secretion system (T2SS), protein F
DM55_RS15885	PF16968	DM55_RS15885
DM55_RS15890	PF00263	DM55_RS15890
DM55_RS15890	PF13629	DM55_RS15890
DM55_RS15895	PF08666	SAF domain
DM55_RS15895	PF16976	DM55_RS15895
DM55_RS15900	PF07811	DM55_RS15900
DM55_RS15905	PF01478	Type IV leader peptidase family
DM55_RS15910	PF04964	DM55_RS15910
DM55_RS15915	PF13276	DM55_RS15915
DM55_RS15915	PF13683	DM55_RS15915
DM55_RS15920	PF01527	Transposase
DM55_RS15930	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS15935	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS15940	PF00005	ABC transporter
DM55_RS15940	PF08402	TOBE domain
DM55_RS15945	PF13416	Bacterial extracellular solute-binding protein
DM55_RS15950	PF01566	DM55_RS15950
DM55_RS15955	PF06945	DM55_RS15955
DM55_RS15960	PF03922	OmpW family
DM55_RS15965	PF03060	Nitronate monooxygenase
DM55_RS15970	PF00171	Aldehyde dehydrogenase family
DM55_RS15980	PF00005	ABC transporter
DM55_RS15980	PF12848	ABC transporter
DM55_RS15985	PF05170	DM55_RS15985
DM55_RS15990	PF00005	ABC transporter
DM55_RS15995	PF03649	DM55_RS15995
DM55_RS16005	PF12710	haloacid dehalogenase-like hydrolase
DM55_RS16005	PF13284	DM55_RS16005
DM55_RS16010	PF01053	Cys/Met metabolism PLP-dependent enzyme
DM55_RS16020	PF00108	Thiolase, N-terminal domain
DM55_RS16020	PF02803	Thiolase, C-terminal domain
DM55_RS16025	PF00294	pfkB family carbohydrate kinase
DM55_RS16030	PF00919	Uncharacterized protein family UPF0004
DM55_RS16030	PF01938	TRAM domain
DM55_RS16030	PF04055	Radical SAM superfamily
DM55_RS16035	PF05233	DM55_RS16035
DM55_RS16035	PF07879	DM55_RS16035
DM55_RS16040	PF00106	short chain dehydrogenase
DM55_RS16045	PF00108	Thiolase, N-terminal domain
DM55_RS16045	PF02803	Thiolase, C-terminal domain
DM55_RS16050	PF07167	DM55_RS16050
DM55_RS16055	PF02578	Multi-copper polyphenol oxidoreductase laccase
DM55_RS16060	PF00849	RNA pseudouridylate synthase
DM55_RS16060	PF01479	S4 domain
DM55_RS16065	PF13525	Outer membrane lipoprotein
DM55_RS16070	PF13307	Helicase C-terminal domain
DM55_RS16075	PF04325	Protein of unknown function (DUF465)
DM55_RS16085	PF00575	S1 RNA binding domain
DM55_RS16085	PF09371	Tex-like protein N-terminal domain
DM55_RS16085	PF12836	Helix-hairpin-helix motif
DM55_RS16085	PF16921	DM55_RS16085
DM55_RS16090	PF02705	DM55_RS16090
DM55_RS16095	PF00156	Phosphoribosyl transferase domain
DM55_RS16100	PF00709	Adenylosuccinate synthetase
DM55_RS16105	PF13393	Histidyl-tRNA synthetase
DM55_RS16110	PF09838	DM55_RS16110
DM55_RS16115	PF01145	SPFH domain / Band 7 family
DM55_RS16120	PF01145	SPFH domain / Band 7 family
DM55_RS16120	PF12221	DM55_RS16120
DM55_RS16125	PF01926	50S ribosome-binding GTPase
DM55_RS16125	PF13167	DM55_RS16125
DM55_RS16125	PF16360	DM55_RS16125
DM55_RS16135	PF01926	50S ribosome-binding GTPase
DM55_RS16135	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
DM55_RS16140	PF13360	PQQ-like domain
DM55_RS16145	PF09976	Tetratricopeptide repeat
DM55_RS16150	PF03129	Anticodon binding domain
DM55_RS16150	PF13393	Histidyl-tRNA synthetase
DM55_RS16155	PF04551	GcpE protein
DM55_RS16160	PF13413	Helix-turn-helix domain
DM55_RS16160	PF13464	DM55_RS16160
DM55_RS16165	PF04055	Radical SAM superfamily
DM55_RS16170	PF00334	Nucleoside diphosphate kinase
DM55_RS16175	PF01027	Inhibitor of apoptosis-promoting Bax1
DM55_RS16180	PF05958	tRNA (Uracil-5-)-methyltransferase
DM55_RS16185	PF03372	Endonuclease/Exonuclease/phosphatase family
DM55_RS16195	PF10108	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
DM55_RS16200	PF00140	Sigma-70 factor, region 1
DM55_RS16200	PF04539	Sigma-70 region 3
DM55_RS16200	PF04542	Sigma-70 region 2
DM55_RS16200	PF04545	Sigma-70, region 4
DM55_RS16205	PF01476	LysM domain
DM55_RS16205	PF01551	Peptidase family M23
DM55_RS16210	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
DM55_RS16215	PF01975	Survival protein SurE
DM55_RS16245	PF12169	DNA polymerase III subunits gamma and tau domain III
DM55_RS16300	PF01554	MatE
DM55_RS16355	PF01522	Polysaccharide deacetylase
DM55_RS16445	PF13304	AAA domain
DM55_RS16520	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
DM55_RS16520	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
DM55_RS16550	PF13507	CobB/CobQ-like glutamine amidotransferase domain
DM55_RS16585	PF00342	Phosphoglucose isomerase
DM55_RS16715	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS16720	PF00528	Binding-protein-dependent transport system inner membrane component
DM55_RS16825	PF08811	DM55_RS16825
DM55_RS16865	PF02559	CarD-like/TRCF domain
DM55_RS17085	PF01103	Surface antigen
DM55_RS17110	PF00318	Ribosomal protein S2
DM55_RS17115	PF00318	Ribosomal protein S2
DM55_RS17175	PF06470	SMC proteins Flexible Hinge Domain
DM55_RS17255	PF08907	DM55_RS17255
DM55_RS17365	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
DM55_RS17420	PF00557	Metallopeptidase family M24
DM55_RS17535	PF00668	Condensation domain
DM55_RS17540	PF00668	Condensation domain
DM55_RS17590	PF00873	AcrB/AcrD/AcrF family
DM55_RS17610	PF03797	Autotransporter beta-domain
DM55_RS17630	PF01610	DM55_RS17630
DM55_RS17730	PF00701	Dihydrodipicolinate synthetase family
DM55_RS17785	PF00117	Glutamine amidotransferase class-I
DM55_RS17785	PF06418	CTP synthase N-terminus
DM55_RS17980	PF01687	Riboflavin kinase
DM55_RS17980	PF06574	FAD synthetase
DM55_RS17995	PF00133	tRNA synthetases class I (I, L, M and V)
DM55_RS18215	PF00069	Protein kinase domain
DM55_RS18440	PF00004	ATPase family associated with various cellular activities (AAA)
DM55_RS18555	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
DM55_RS18700	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
DM55_RS18715	PF12911	DM55_RS18715
DM55_RS18730	PF01963	DM55_RS18730
DM55_RS18775	PF01743	Poly A polymerase head domain
DM55_RS18775	PF12627	Probable RNA and SrmB- binding site of polymerase A
DM55_RS18805	PF03963	DM55_RS18805
DM55_RS18865	PF00860	Permease family
DM55_RS18975	PF11604	Copper binding periplasmic protein CusF
DM55_RS19030	PF07221	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
DM55_RS19045	PF13593	SBF-like CPA transporter family (DUF4137)
DM55_RS19130	PF00753	Metallo-beta-lactamase superfamily
DM55_RS19185	PF01979	Amidohydrolase family
DM55_RS19480	PF00773	RNB domain
DM55_RS19560	PF00317	Ribonucleotide reductase, all-alpha domain
DM55_RS19560	PF02867	Ribonucleotide reductase, barrel domain
DM55_RS19560	PF03477	ATP cone domain
DM55_RS19580	PF00448	SRP54-type protein, GTPase domain
DM55_RS19680	PF08534	Redoxin
DM55_RS19755	PF13609	Gram-negative porin
DM55_RS19920	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
DM55_RS19920	PF03466	LysR substrate binding domain
DM55_RS19940	PF02770	Acyl-CoA dehydrogenase, middle domain
DM55_RS19940	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
DM55_RS19955	PF00375	Sodium:dicarboxylate symporter family
DM55_RS20165	PF00012	Hsp70 protein
DM55_RS20205	PF05175	Methyltransferase small domain
DM55_RS20225	PF01433	Peptidase family M1
DM55_RS20495	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
DM55_RS20500	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
DM55_RS20500	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
DM55_RS20530	PF04185	Phosphoesterase family
DM55_RS20625	PF01266	FAD dependent oxidoreductase
DM55_RS20675	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
DM55_RS20680	PF13404	AsnC-type helix-turn-helix domain
DM55_RS20725	PF13458	Periplasmic binding protein
DM55_RS20735	PF02653	DM55_RS20735
DM55_RS21055	PF03173	Putative carbohydrate binding domain
DM55_RS21225	PF00487	DM55_RS21225
DM55_RS21300	PF00682	HMGL-like
DM55_RS21345	PF04324	BFD-like [2Fe-2S] binding domain
DM55_RS21380	PF00155	Aminotransferase class I and II
DM55_RS21395	PF00288	GHMP kinases N terminal domain
DM55_RS21395	PF08544	GHMP kinases C terminal
DM55_RS21415	PF00633	Helix-hairpin-helix motif
DM55_RS21415	PF00730	HhH-GPD superfamily base excision DNA repair protein
DM55_RS21465	PF00999	Sodium/hydrogen exchanger family
DM55_RS21555	PF06751	Ethanolamine ammonia lyase large subunit (EutB)
DM55_RS21710	PF05134	Type II secretion system (T2SS), protein L
DM55_RS22025	PF00263	DM55_RS22025
DM55_RS22025	PF03958	Bacterial type II/III secretion system short domain
DM55_RS22025	PF07660	Secretin and TonB N terminus short domain
DM55_RS22060	PF00905	Penicillin binding protein transpeptidase domain
DM55_RS22080	PF13683	DM55_RS22080
DM55_RS22170	PF00270	DEAD/DEAH box helicase
DM55_RS22170	PF01610	DM55_RS22170
DM55_RS22275	PF02683	DM55_RS22275
DM55_RS22275	PF11412	Disulphide bond corrector protein DsbC
DM55_RS22275	PF13899	Thioredoxin-like
DM55_RS22385	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
DM55_RS22455	PF01883	Domain of unknown function DUF59
DM55_RS22735	PF01645	Conserved region in glutamate synthase
DM55_RS22860	PF01523	Putative modulator of DNA gyrase
DM55_RS23170	PF00009	Elongation factor Tu GTP binding domain
DM55_RS23255	PF00140	Sigma-70 factor, region 1
DM55_RS23255	PF04539	Sigma-70 region 3
DM55_RS23255	PF04542	Sigma-70 region 2
DM55_RS23385	PF01189	NOL1/NOP2/sun family
DM55_RS23445	PF02934	GatB/GatE catalytic domain
DM55_RS23490	PF07690	Major Facilitator Superfamily
DM55_RS23725	PF02562	PhoH-like protein
DM55_RS24005	PF05437	DM55_RS24005
DM55_RS24010	PF00162	Phosphoglycerate kinase
DM55_RS24025	PF01116	Fructose-bisphosphate aldolase class-II
DM55_RS24415	PF00106	short chain dehydrogenase
DM55_RS24550	PF11940	Domain of unknown function (DUF3458)
DM55_RS24610	PF07722	Peptidase C26
DM55_RS24625	PF00083	Sugar (and other) transporter
DM55_RS24670	PF00037	4Fe-4S binding domain
DM55_RS24670	PF00384	Molybdopterin oxidoreductase
DM55_RS24670	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
DM55_RS24670	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
DM55_RS24670	PF13510	2Fe-2S iron-sulfur cluster binding domain
DM55_RS24830	PF00850	Histone deacetylase domain
DM55_RS25050	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
DM55_RS25090	PF10150	Ribonuclease E/G family
DM55_RS25135	PF00106	short chain dehydrogenase