NW94_RS00005	SM00382	ATPases associated with a variety of cellular activities
NW94_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
NW94_RS00010	SM00480	DNA polymerase III beta subunit
NW94_RS00020	SM00387	Histidine kinase-like ATPases
NW94_RS00020	SM00433	TopoisomeraseII
NW94_RS00090	SM00240	Forkhead associated domain
NW94_RS00095	SM00220	Serine/Threonine protein kinases, catalytic domain
NW94_RS00115	SM01007	Class II Aldolase and Adducin N-terminal domain
NW94_RS00130	SM00052	Putative diguanylate phosphodiesterase
NW94_RS00130	SM00267	diguanylate cyclase
NW94_RS00175	SM00382	ATPases associated with a variety of cellular activities
NW94_RS00220	SM00419	helix_turn_helix, cAMP Regulatory protein
NW94_RS00270	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS00295	SM00363	S4 RNA-binding domain
NW94_RS00305	SM00855	Phosphoglycerate mutase family
NW94_RS00320	SM00382	ATPases associated with a variety of cellular activities
NW94_RS00325	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NW94_RS00340	SM00798	AICARFT/IMPCHase bienzyme
NW94_RS00340	SM00851	MGS-like domain
NW94_RS00360	SM01011	Aminopeptidase P, N-terminal domain
NW94_RS00395	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
NW94_RS00395	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
NW94_RS00450	SM00981	NW94_RS00450
NW94_RS00495	SM00867	YceI-like domain 
NW94_RS00500	SM00867	YceI-like domain 
NW94_RS00525	SM01323	NW94_RS00525
NW94_RS00545	SM00487	DEAD-like helicases superfamily
NW94_RS00545	SM00490	helicase superfamily c-terminal domain
NW94_RS00590	SM00072	Guanylate kinase homologues.
NW94_RS00600	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS00600	SM00866	NW94_RS00600
NW94_RS00630	SM00382	ATPases associated with a variety of cellular activities
NW94_RS00635	SM00382	ATPases associated with a variety of cellular activities
NW94_RS00645	SM00382	ATPases associated with a variety of cellular activities
NW94_RS00775	SM00883	Chaperonin 10 Kd subunit
NW94_RS00790	SM00382	ATPases associated with a variety of cellular activities
NW94_RS00805	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS00810	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
NW94_RS01005	SM00116	Domain in cystathionine beta-synthase and other proteins.
NW94_RS01025	SM00382	ATPases associated with a variety of cellular activities
NW94_RS01060	SM00464	Found in ATP-dependent protease La (LON)
NW94_RS01065	SM00478	endonuclease III
NW94_RS01070	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
NW94_RS01070	SM01232	NW94_RS01070
NW94_RS01075	SM00028	Tetratricopeptide repeats
NW94_RS01095	SM01400	NW94_RS01095
NW94_RS01135	SM00382	ATPases associated with a variety of cellular activities
NW94_RS01135	SM00962	SRP54-type protein, GTPase domain
NW94_RS01135	SM00963	SRP54-type protein, helical bundle domain
NW94_RS01160	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
NW94_RS01225	SM00382	ATPases associated with a variety of cellular activities
NW94_RS01240	SM00481	DNA polymerase alpha chain like domain
NW94_RS01275	SM00382	ATPases associated with a variety of cellular activities
NW94_RS01360	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS01360	SM00866	NW94_RS01360
NW94_RS01385	SM01081	Putative carbohydrate binding domain
NW94_RS01475	SM00422	helix_turn_helix, mercury resistance
NW94_RS01500	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS01560	SM00487	DEAD-like helicases superfamily
NW94_RS01560	SM00490	helicase superfamily c-terminal domain
NW94_RS01575	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS01610	SM00382	ATPases associated with a variety of cellular activities
NW94_RS01660	SM00470	ParB-like nuclease domain
NW94_RS01675	SM01228	NW94_RS01675
NW94_RS01680	SM00382	ATPases associated with a variety of cellular activities
NW94_RS01685	SM00382	ATPases associated with a variety of cellular activities
NW94_RS01720	SM00382	ATPases associated with a variety of cellular activities
NW94_RS01725	SM00382	ATPases associated with a variety of cellular activities
NW94_RS01760	SM01118	NW94_RS01760
NW94_RS01765	SM00344	helix_turn_helix ASNC type
NW94_RS01785	SM00448	cheY-homologous receiver domain
NW94_RS01785	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS01790	SM00387	Histidine kinase-like ATPases
NW94_RS01790	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS01805	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
NW94_RS01820	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS01855	SM00411	bacterial (prokaryotic) histone like domain
NW94_RS01875	SM00849	Metallo-beta-lactamase superfamily
NW94_RS01885	SM00344	helix_turn_helix ASNC type
NW94_RS01895	SM00528	Domain in histone-like proteins of HNS family
NW94_RS01960	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS01960	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS02040	SM00822	NW94_RS02040
NW94_RS02065	SM00028	Tetratricopeptide repeats
NW94_RS02125	SM00528	Domain in histone-like proteins of HNS family
NW94_RS02165	SM00448	cheY-homologous receiver domain
NW94_RS02170	SM00073	Histidine Phosphotransfer domain
NW94_RS02170	SM00260	Two component signalling adaptor domain
NW94_RS02170	SM00387	Histidine kinase-like ATPases
NW94_RS02170	SM01231	NW94_RS02170
NW94_RS02175	SM00260	Two component signalling adaptor domain
NW94_RS02180	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS02180	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS02185	SM00138	Methyltransferase, chemotaxis proteins 
NW94_RS02195	SM00448	cheY-homologous receiver domain
NW94_RS02205	SM00448	cheY-homologous receiver domain
NW94_RS02245	SM00382	ATPases associated with a variety of cellular activities
NW94_RS02245	SM00962	SRP54-type protein, GTPase domain
NW94_RS02260	SM00996	S-adenosyl-L-homocysteine hydrolase
NW94_RS02260	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
NW94_RS02315	SM00382	ATPases associated with a variety of cellular activities
NW94_RS02315	SM01086	C-terminal, D2-small domain, of ClpB protein
NW94_RS02360	SM00382	ATPases associated with a variety of cellular activities
NW94_RS02415	SM00769	Water Stress and Hypersensitive response
NW94_RS02510	SM00749	bacterial OsmY and nodulation domain
NW94_RS02545	SM00357	Cold shock protein domain
NW94_RS02575	SM00965	Secretin and TonB N terminus short domain
NW94_RS02590	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NW94_RS02610	SM00382	ATPases associated with a variety of cellular activities
NW94_RS02625	SM01321	NW94_RS02625
NW94_RS02655	SM00382	ATPases associated with a variety of cellular activities
NW94_RS02680	SM00382	ATPases associated with a variety of cellular activities
NW94_RS02715	SM00382	ATPases associated with a variety of cellular activities
NW94_RS02815	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NW94_RS02895	SM00422	helix_turn_helix, mercury resistance
NW94_RS02915	SM00382	ATPases associated with a variety of cellular activities
NW94_RS02925	SM00387	Histidine kinase-like ATPases
NW94_RS02925	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS02930	SM00448	cheY-homologous receiver domain
NW94_RS02930	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS02970	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS02975	SM00382	ATPases associated with a variety of cellular activities
NW94_RS02985	SM00382	ATPases associated with a variety of cellular activities
NW94_RS03070	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS03180	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS03250	SM00382	ATPases associated with a variety of cellular activities
NW94_RS03270	SM00833	Cobalamin synthesis protein cobW C-terminal domain
NW94_RS03280	SM01219	NW94_RS03280
NW94_RS03330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS03330	SM00895	NW94_RS03330
NW94_RS03350	SM00947	Carbonic anhydrase
NW94_RS03355	SM01116	NW94_RS03355
NW94_RS03370	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
NW94_RS03375	SM00861	Transketolase, pyrimidine binding domain
NW94_RS03410	SM00919	Malic enzyme, NAD binding domain
NW94_RS03410	SM01274	NW94_RS03410
NW94_RS03430	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
NW94_RS03440	SM00822	NW94_RS03440
NW94_RS03450	SM00382	ATPases associated with a variety of cellular activities
NW94_RS03460	SM00822	NW94_RS03460
NW94_RS03475	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS03505	SM00955	NW94_RS03505
NW94_RS03540	SM00878	Biotin carboxylase C-terminal domain
NW94_RS03600	SM00644	NW94_RS03600
NW94_RS03705	SM00947	Carbonic anhydrase
NW94_RS03710	SM01116	NW94_RS03710
NW94_RS03725	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
NW94_RS03730	SM00861	Transketolase, pyrimidine binding domain
NW94_RS03765	SM00919	Malic enzyme, NAD binding domain
NW94_RS03765	SM01274	NW94_RS03765
NW94_RS03785	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
NW94_RS03795	SM00822	NW94_RS03795
NW94_RS03805	SM00382	ATPases associated with a variety of cellular activities
NW94_RS03815	SM00822	NW94_RS03815
NW94_RS03830	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS03860	SM00955	NW94_RS03860
NW94_RS03895	SM00878	Biotin carboxylase C-terminal domain
NW94_RS03955	SM00644	NW94_RS03955
NW94_RS03970	SM00382	ATPases associated with a variety of cellular activities
NW94_RS03970	SM00962	SRP54-type protein, GTPase domain
NW94_RS03970	SM00963	SRP54-type protein, helical bundle domain
NW94_RS04010	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
NW94_RS04055	SM01091	Transporter associated domain
NW94_RS04060	SM00382	ATPases associated with a variety of cellular activities
NW94_RS04095	SM00382	ATPases associated with a variety of cellular activities
NW94_RS04105	SM00957	SecA DEAD-like domain
NW94_RS04105	SM00958	SecA preprotein cross-linking domain
NW94_RS04130	SM00864	Tubulin/FtsZ family, GTPase domain
NW94_RS04130	SM00865	Tubulin/FtsZ family, C-terminal domain
NW94_RS04140	SM00842	Cell division protein FtsA
NW94_RS04225	SM01018	B12 binding domain
NW94_RS04250	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS04310	SM00671	Sel1-like repeats.
NW94_RS04325	SM00382	ATPases associated with a variety of cellular activities
NW94_RS04360	SM00936	Penicillin-binding protein 5, C-terminal domain 
NW94_RS04390	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS04460	SM00382	ATPases associated with a variety of cellular activities
NW94_RS04460	SM00448	cheY-homologous receiver domain
NW94_RS04500	SM00382	ATPases associated with a variety of cellular activities
NW94_RS04510	SM00938	Nitrogen regulatory protein P-II
NW94_RS04680	SM00047	Lysozyme subfamily 2
NW94_RS04730	SM00858	NW94_RS04730
NW94_RS04795	SM00796	Allophanate hydrolase subunit 1
NW94_RS04800	SM00797	Allophanate hydrolase subunit 2
NW94_RS04830	SM00382	ATPases associated with a variety of cellular activities
NW94_RS04835	SM00382	ATPases associated with a variety of cellular activities
NW94_RS04875	SM00382	ATPases associated with a variety of cellular activities
NW94_RS04910	SM00421	helix_turn_helix, Lux Regulon
NW94_RS04910	SM00448	cheY-homologous receiver domain
NW94_RS04970	SM00382	ATPases associated with a variety of cellular activities
NW94_RS05085	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
NW94_RS05090	SM00833	Cobalamin synthesis protein cobW C-terminal domain
NW94_RS05115	SM00382	ATPases associated with a variety of cellular activities
NW94_RS05115	SM01086	C-terminal, D2-small domain, of ClpB protein
NW94_RS05120	SM00448	cheY-homologous receiver domain
NW94_RS05125	SM00387	Histidine kinase-like ATPases
NW94_RS05125	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS05170	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS05185	SM00829	Enoylreductase
NW94_RS05235	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NW94_RS05235	SM00245	tail specific protease
NW94_RS05240	SM00855	Phosphoglycerate mutase family
NW94_RS05245	SM00450	Rhodanese Homology Domain
NW94_RS05265	SM00506	Appr-1"-p processing enzyme
NW94_RS05360	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS05360	SM01049	NW94_RS05360
NW94_RS05405	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS05535	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
NW94_RS05535	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
NW94_RS05540	SM00649	Ribosomal protein L11/L12
NW94_RS05565	SM00663	RNA polymerase I subunit A N-terminus
NW94_RS05580	SM00341	Helicase and RNase D C-terminal
NW94_RS05580	SM00487	DEAD-like helicases superfamily
NW94_RS05580	SM00490	helicase superfamily c-terminal domain
NW94_RS05580	SM00956	NW94_RS05580
NW94_RS05595	SM00838	Elongation factor G C-terminus
NW94_RS05595	SM00889	Elongation factor G, domain IV
NW94_RS05605	SM01403	NW94_RS05605
NW94_RS05625	SM01382	NW94_RS05625
NW94_RS05625	SM01383	NW94_RS05625
NW94_RS05640	SM00322	K homology RNA-binding domain
NW94_RS05660	SM01374	NW94_RS05660
NW94_RS05715	SM00316	Ribosomal protein S1-like RNA-binding domain
NW94_RS05735	SM00363	S4 RNA-binding domain
NW94_RS05735	SM01390	NW94_RS05735
NW94_RS05740	SM00662	RNA polymerases D
NW94_RS05760	SM01004	Delta-aminolevulinic acid dehydratase
NW94_RS05825	SM00859	Semialdehyde dehydrogenase, NAD binding domain
NW94_RS05855	SM00919	Malic enzyme, NAD binding domain
NW94_RS05855	SM01274	NW94_RS05855
NW94_RS05890	SM00344	helix_turn_helix ASNC type
NW94_RS06005	SM00836	DALR anticodon binding domain
NW94_RS06005	SM01016	Arginyl tRNA synthetase N terminal dom
NW94_RS06035	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS06050	SM00382	ATPases associated with a variety of cellular activities
NW94_RS06055	SM00849	Metallo-beta-lactamase superfamily
NW94_RS06070	SM00947	Carbonic anhydrase
NW94_RS06110	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS06110	SM00876	Biotin and Thiamin Synthesis associated domain
NW94_RS06130	SM00098	Alkaline phosphatase homologues
NW94_RS06135	SM00098	Alkaline phosphatase homologues
NW94_RS06180	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS06185	SM00354	helix_turn _helix lactose operon repressor
NW94_RS06220	SM00905	Dihydroneopterin aldolase
NW94_RS06300	SM00746	metallochaperone-like domain
NW94_RS06380	SM00382	ATPases associated with a variety of cellular activities
NW94_RS06400	SM00363	S4 RNA-binding domain
NW94_RS06420	SM00271	DnaJ molecular chaperone homology domain
NW94_RS06485	SM00853	MutL C terminal dimerisation domain
NW94_RS06485	SM01340	NW94_RS06485
NW94_RS06535	SM00382	ATPases associated with a variety of cellular activities
NW94_RS06610	SM00822	NW94_RS06610
NW94_RS06610	SM00823	Phosphopantetheine attachment site
NW94_RS06610	SM00825	Beta-ketoacyl synthase
NW94_RS06610	SM00826	NW94_RS06610
NW94_RS06610	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
NW94_RS06610	SM00829	Enoylreductase
NW94_RS06610	SM01294	NW94_RS06610
NW94_RS06660	SM00838	Elongation factor G C-terminus
NW94_RS06660	SM00889	Elongation factor G, domain IV
NW94_RS06705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS06705	SM00866	NW94_RS06705
NW94_RS06735	SM00052	Putative diguanylate phosphodiesterase
NW94_RS06760	SM00100	Cyclic nucleotide-monophosphate binding domain
NW94_RS06760	SM00419	helix_turn_helix, cAMP Regulatory protein
NW94_RS06825	SM00357	Cold shock protein domain
NW94_RS06835	SM00382	ATPases associated with a variety of cellular activities
NW94_RS06835	SM01086	C-terminal, D2-small domain, of ClpB protein
NW94_RS06880	SM00904	Riboflavin kinase
NW94_RS06980	SM00316	Ribosomal protein S1-like RNA-binding domain
NW94_RS07015	SM00382	ATPases associated with a variety of cellular activities
NW94_RS07020	SM00387	Histidine kinase-like ATPases
NW94_RS07020	SM00433	TopoisomeraseII
NW94_RS07025	SM00434	DNA Topoisomerase IV
NW94_RS07095	SM00052	Putative diguanylate phosphodiesterase
NW94_RS07095	SM00267	diguanylate cyclase
NW94_RS07175	SM00988	UreE urease accessory protein, N-terminal domain
NW94_RS07200	SM00382	ATPases associated with a variety of cellular activities
NW94_RS07235	SM00450	Rhodanese Homology Domain
NW94_RS07240	SM00650	Ribosomal RNA adenine dimethylases
NW94_RS07250	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS07445	SM00382	ATPases associated with a variety of cellular activities
NW94_RS07455	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS07495	SM00382	ATPases associated with a variety of cellular activities
NW94_RS07505	SM00463	Small MutS-related domain
NW94_RS07515	SM00843	NW94_RS07515
NW94_RS07530	SM00382	ATPases associated with a variety of cellular activities
NW94_RS07640	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS07660	SM00072	Guanylate kinase homologues.
NW94_RS07665	SM01409	NW94_RS07665
NW94_RS07670	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NW94_RS07670	SM00954	Region found in RelA / SpoT proteins
NW94_RS07830	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS07855	SM00849	Metallo-beta-lactamase superfamily
NW94_RS07930	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS07950	SM01092	CO dehydrogenase flavoprotein C-terminal domain
NW94_RS07955	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
NW94_RS07985	SM00382	ATPases associated with a variety of cellular activities
NW94_RS08070	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS08075	SM00849	Metallo-beta-lactamase superfamily
NW94_RS08120	SM00829	Enoylreductase
NW94_RS08140	SM00883	Chaperonin 10 Kd subunit
NW94_RS08170	SM00732	Likely ribonuclease with RNase H fold.
NW94_RS08190	SM00563	Phosphate acyltransferases
NW94_RS08225	SM00382	ATPases associated with a variety of cellular activities
NW94_RS08290	SM00382	ATPases associated with a variety of cellular activities
NW94_RS08295	SM00382	ATPases associated with a variety of cellular activities
NW94_RS08365	SM01130	NW94_RS08365
NW94_RS08370	SM01007	Class II Aldolase and Adducin N-terminal domain
NW94_RS08375	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS08405	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS08415	SM00387	Histidine kinase-like ATPases
NW94_RS08425	SM00986	Uracil DNA glycosylase superfamily
NW94_RS08425	SM00987	UreE urease accessory protein, C-terminal domain 
NW94_RS08470	SM00382	ATPases associated with a variety of cellular activities
NW94_RS08510	SM00478	endonuclease III
NW94_RS08550	SM00382	ATPases associated with a variety of cellular activities
NW94_RS08550	SM00843	NW94_RS08550
NW94_RS08585	SM00487	DEAD-like helicases superfamily
NW94_RS08585	SM00490	helicase superfamily c-terminal domain
NW94_RS08600	SM00450	Rhodanese Homology Domain
NW94_RS08610	SM00481	DNA polymerase alpha chain like domain
NW94_RS08615	SM00382	ATPases associated with a variety of cellular activities
NW94_RS08755	SM00316	Ribosomal protein S1-like RNA-binding domain
NW94_RS08785	SM01209	NW94_RS08785
NW94_RS08785	SM01210	NW94_RS08785
NW94_RS08810	SM00851	MGS-like domain
NW94_RS08820	SM00829	Enoylreductase
NW94_RS08860	SM00448	cheY-homologous receiver domain
NW94_RS08860	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS08895	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NW94_RS09025	SM00947	Carbonic anhydrase
NW94_RS09045	SM01387	NW94_RS09045
NW94_RS09055	SM00316	Ribosomal protein S1-like RNA-binding domain
NW94_RS09055	SM00322	K homology RNA-binding domain
NW94_RS09060	SM00829	Enoylreductase
NW94_RS09105	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
NW94_RS09110	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
NW94_RS09185	SM00710	Parallel beta-helix repeats
NW94_RS09205	SM00855	Phosphoglycerate mutase family
NW94_RS09235	SM00631	NW94_RS09235
NW94_RS09250	SM00421	helix_turn_helix, Lux Regulon
NW94_RS09335	SM00344	helix_turn_helix ASNC type
NW94_RS09340	SM00382	ATPases associated with a variety of cellular activities
NW94_RS09520	SM00382	ATPases associated with a variety of cellular activities
NW94_RS09550	SM00354	helix_turn _helix lactose operon repressor
NW94_RS09585	SM00267	diguanylate cyclase
NW94_RS09610	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS09615	SM00344	helix_turn_helix ASNC type
NW94_RS09675	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS09785	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
NW94_RS09845	SM00479	NW94_RS09845
NW94_RS09860	SM00849	Metallo-beta-lactamase superfamily
NW94_RS09865	SM00257	Lysin motif
NW94_RS09885	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS09895	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
NW94_RS09905	SM00851	MGS-like domain
NW94_RS09905	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
NW94_RS09920	SM01103	NW94_RS09920
NW94_RS09930	SM00382	ATPases associated with a variety of cellular activities
NW94_RS09965	SM00382	ATPases associated with a variety of cellular activities
NW94_RS09975	SM00448	cheY-homologous receiver domain
NW94_RS09975	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS09980	SM00387	Histidine kinase-like ATPases
NW94_RS09980	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS10045	SM00855	Phosphoglycerate mutase family
NW94_RS10085	SM00257	Lysin motif
NW94_RS10125	SM00422	helix_turn_helix, mercury resistance
NW94_RS10130	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS10150	SM00642	Alpha-amylase domain
NW94_RS10160	SM00642	Alpha-amylase domain
NW94_RS10165	SM00642	Alpha-amylase domain
NW94_RS10175	SM00642	Alpha-amylase domain
NW94_RS10180	SM00642	Alpha-amylase domain
NW94_RS10195	SM00060	Fibronectin type 3 domain
NW94_RS10235	SM00448	cheY-homologous receiver domain
NW94_RS10235	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS10260	SM00448	cheY-homologous receiver domain
NW94_RS10260	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS10280	SM00028	Tetratricopeptide repeats
NW94_RS10285	SM00528	Domain in histone-like proteins of HNS family
NW94_RS10305	SM00458	Ricin-type beta-trefoil
NW94_RS10305	SM00612	NW94_RS10305
NW94_RS10445	SM00972	Spore Coat Protein U domain
NW94_RS10450	SM00972	Spore Coat Protein U domain
NW94_RS10455	SM00972	Spore Coat Protein U domain
NW94_RS10470	SM00972	Spore Coat Protein U domain
NW94_RS10480	SM00387	Histidine kinase-like ATPases
NW94_RS10480	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS10480	SM00448	cheY-homologous receiver domain
NW94_RS10485	SM00421	helix_turn_helix, Lux Regulon
NW94_RS10485	SM00448	cheY-homologous receiver domain
NW94_RS10590	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NW94_RS10670	SM00382	ATPases associated with a variety of cellular activities
NW94_RS10675	SM00382	ATPases associated with a variety of cellular activities
NW94_RS10700	SM00382	ATPases associated with a variety of cellular activities
NW94_RS10745	SM00448	cheY-homologous receiver domain
NW94_RS10745	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS10755	SM00387	Histidine kinase-like ATPases
NW94_RS10755	SM01080	NW94_RS10755
NW94_RS10790	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS10875	SM00116	Domain in cystathionine beta-synthase and other proteins.
NW94_RS10990	SM00861	Transketolase, pyrimidine binding domain
NW94_RS11005	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS11045	SM00316	Ribosomal protein S1-like RNA-binding domain
NW94_RS11045	SM00322	K homology RNA-binding domain
NW94_RS11055	SM00363	S4 RNA-binding domain
NW94_RS11160	SM00422	helix_turn_helix, mercury resistance
NW94_RS11165	SM00411	bacterial (prokaryotic) histone like domain
NW94_RS11170	SM00873	B3/4 domain
NW94_RS11170	SM00874	tRNA synthetase B5 domain
NW94_RS11170	SM00896	Ferredoxin-fold anticodon binding domain
NW94_RS11195	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NW94_RS11205	SM00954	Region found in RelA / SpoT proteins
NW94_RS11250	SM00882	Coenzyme A transferase
NW94_RS11255	SM00882	Coenzyme A transferase
NW94_RS11265	SM00421	helix_turn_helix, Lux Regulon
NW94_RS11295	SM00822	NW94_RS11295
NW94_RS11325	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
NW94_RS11330	SM00923	MbtH-like protein
NW94_RS11340	SM00823	Phosphopantetheine attachment site
NW94_RS11340	SM00824	Thioesterase
NW94_RS11365	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS11375	SM00260	Two component signalling adaptor domain
NW94_RS11380	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS11435	SM00382	ATPases associated with a variety of cellular activities
NW94_RS11505	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS11515	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS11575	SM00495	Chitin-binding domain type 3
NW94_RS11610	SM00382	ATPases associated with a variety of cellular activities
NW94_RS11625	SM00833	Cobalamin synthesis protein cobW C-terminal domain
NW94_RS11675	SM00823	Phosphopantetheine attachment site
NW94_RS11685	SM00382	ATPases associated with a variety of cellular activities
NW94_RS11720	SM00382	ATPases associated with a variety of cellular activities
NW94_RS11730	SM00923	MbtH-like protein
NW94_RS11745	SM00822	NW94_RS11745
NW94_RS11770	SM00382	ATPases associated with a variety of cellular activities
NW94_RS11780	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS11815	SM00382	ATPases associated with a variety of cellular activities
NW94_RS11865	SM00382	ATPases associated with a variety of cellular activities
NW94_RS11975	SM00382	ATPases associated with a variety of cellular activities
NW94_RS12045	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS12045	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NW94_RS12065	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS12065	SM00895	NW94_RS12065
NW94_RS12075	SM00644	NW94_RS12075
NW94_RS12085	SM00967	RNA 2'-O ribose methyltransferase substrate binding
NW94_RS12090	SM00316	Ribosomal protein S1-like RNA-binding domain
NW94_RS12090	SM00357	Cold shock protein domain
NW94_RS12090	SM00955	NW94_RS12090
NW94_RS12110	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS12110	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS12190	SM00382	ATPases associated with a variety of cellular activities
NW94_RS12205	SM00028	Tetratricopeptide repeats
NW94_RS12235	SM00858	NW94_RS12235
NW94_RS12330	SM00382	ATPases associated with a variety of cellular activities
NW94_RS12345	SM00382	ATPases associated with a variety of cellular activities
NW94_RS12395	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS12430	SM00363	S4 RNA-binding domain
NW94_RS12440	SM00491	NW94_RS12440
NW94_RS12455	SM00316	Ribosomal protein S1-like RNA-binding domain
NW94_RS12455	SM00732	Likely ribonuclease with RNase H fold.
NW94_RS12480	SM00788	Adenylosuccinate synthetase
NW94_RS12495	SM00244	prohibitin homologues
NW94_RS12500	SM00244	prohibitin homologues
NW94_RS12515	SM00382	ATPases associated with a variety of cellular activities
NW94_RS12520	SM00564	beta-propeller repeat
NW94_RS12540	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS12550	SM00562	NW94_RS12550
NW94_RS12585	SM00257	Lysin motif
NW94_RS12605	SM00493	NW94_RS12605
NW94_RS12615	SM00382	ATPases associated with a variety of cellular activities
NW94_RS12635	SM00357	Cold shock protein domain
NW94_RS12635	SM00382	ATPases associated with a variety of cellular activities
NW94_RS12635	SM00959	Rho termination factor, N-terminal domain
NW94_RS12640	SM00422	helix_turn_helix, mercury resistance
NW94_RS12685	SM00422	helix_turn_helix, mercury resistance
NW94_RS12700	SM00382	ATPases associated with a variety of cellular activities
NW94_RS12700	SM01086	C-terminal, D2-small domain, of ClpB protein
NW94_RS12725	SM00852	Probable molybdopterin binding domain
NW94_RS12800	SM00670	Large family of predicted nucleotide-binding domains
NW94_RS12825	SM00382	ATPases associated with a variety of cellular activities
NW94_RS12890	SM00870	NW94_RS12890
NW94_RS12945	SM00248	ankyrin repeats
NW94_RS12995	SM00829	Enoylreductase
NW94_RS13005	SM00886	Stress responsive A/B Barrel Domain
NW94_RS13085	SM01211	NW94_RS13085
NW94_RS13115	SM00382	ATPases associated with a variety of cellular activities
NW94_RS13190	SM00382	ATPases associated with a variety of cellular activities
NW94_RS13190	SM00464	Found in ATP-dependent protease La (LON)
NW94_RS13195	SM00382	ATPases associated with a variety of cellular activities
NW94_RS13195	SM00994	ClpX C4-type zinc finger
NW94_RS13195	SM01086	C-terminal, D2-small domain, of ClpB protein
NW94_RS13225	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS13240	SM00421	helix_turn_helix, Lux Regulon
NW94_RS13265	SM00155	Phospholipase D. Active site motifs.
NW94_RS13315	SM00448	cheY-homologous receiver domain
NW94_RS13315	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS13320	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS13320	SM00387	Histidine kinase-like ATPases
NW94_RS13320	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS13345	SM00487	DEAD-like helicases superfamily
NW94_RS13345	SM00490	helicase superfamily c-terminal domain
NW94_RS13345	SM00982	NW94_RS13345
NW94_RS13345	SM01058	CarD-like/TRCF domain
NW94_RS13460	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS13460	SM00895	NW94_RS13460
NW94_RS13545	SM00116	Domain in cystathionine beta-synthase and other proteins.
NW94_RS13545	SM01240	NW94_RS13545
NW94_RS13590	SM00244	prohibitin homologues
NW94_RS13620	SM00944	Pro-kumamolisin, activation domain
NW94_RS13670	SM00935	Outer membrane protein (OmpH-like)
NW94_RS13680	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NW94_RS13730	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NW94_RS13735	SM00363	S4 RNA-binding domain
NW94_RS13745	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NW94_RS13745	SM00292	breast cancer carboxy-terminal domain
NW94_RS13745	SM00532	Ligase N family
NW94_RS13755	SM00771	ZipA, C-terminal domain (FtsZ-binding)
NW94_RS13760	SM00968	SMC proteins Flexible Hinge Domain
NW94_RS13805	SM00155	Phospholipase D. Active site motifs.
NW94_RS13815	SM00382	ATPases associated with a variety of cellular activities
NW94_RS13825	SM00382	ATPases associated with a variety of cellular activities
NW94_RS13830	SM01005	Alanine racemase, C-terminal domain
NW94_RS13855	SM00986	Uracil DNA glycosylase superfamily
NW94_RS13855	SM00987	UreE urease accessory protein, C-terminal domain 
NW94_RS13875	SM00487	DEAD-like helicases superfamily
NW94_RS13875	SM00490	helicase superfamily c-terminal domain
NW94_RS13925	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS13975	SM00382	ATPases associated with a variety of cellular activities
NW94_RS14015	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
NW94_RS14100	SM00861	Transketolase, pyrimidine binding domain
NW94_RS14135	SM00823	Phosphopantetheine attachment site
NW94_RS14135	SM01294	NW94_RS14135
NW94_RS14155	SM00823	Phosphopantetheine attachment site
NW94_RS14200	SM00869	Autotransporter beta-domain
NW94_RS14235	SM00977	TilS substrate C-terminal domain
NW94_RS14245	SM00478	endonuclease III
NW94_RS14250	SM00840	NW94_RS14250
NW94_RS14255	SM00028	Tetratricopeptide repeats
NW94_RS14320	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
NW94_RS14320	SM00534	ATPase domain of DNA mismatch repair MUTS family
NW94_RS14335	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
NW94_RS14350	SM00849	Metallo-beta-lactamase superfamily
NW94_RS14360	SM01130	NW94_RS14360
NW94_RS14385	SM00481	DNA polymerase alpha chain like domain
NW94_RS14430	SM01192	NW94_RS14430
NW94_RS14430	SM01193	NW94_RS14430
NW94_RS14455	SM00849	Metallo-beta-lactamase superfamily
NW94_RS14465	SM00382	ATPases associated with a variety of cellular activities
NW94_RS14525	SM00271	DnaJ molecular chaperone homology domain
NW94_RS14550	SM00226	Low molecular weight phosphatase family
NW94_RS14575	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS14625	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
NW94_RS14625	SM00091	PAS domain
NW94_RS14625	SM00387	Histidine kinase-like ATPases
NW94_RS14625	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS14630	SM00421	helix_turn_helix, Lux Regulon
NW94_RS14630	SM00448	cheY-homologous receiver domain
NW94_RS14680	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
NW94_RS14700	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS14700	SM00387	Histidine kinase-like ATPases
NW94_RS14705	SM00421	helix_turn_helix, Lux Regulon
NW94_RS14705	SM00448	cheY-homologous receiver domain
NW94_RS14720	SM00382	ATPases associated with a variety of cellular activities
NW94_RS14720	SM00448	cheY-homologous receiver domain
NW94_RS14725	SM00387	Histidine kinase-like ATPases
NW94_RS14725	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS14730	SM01230	NW94_RS14730
NW94_RS14740	SM00450	Rhodanese Homology Domain
NW94_RS14745	SM00852	Probable molybdopterin binding domain
NW94_RS14770	SM00382	ATPases associated with a variety of cellular activities
NW94_RS14770	SM00487	DEAD-like helicases superfamily
NW94_RS14770	SM00490	helicase superfamily c-terminal domain
NW94_RS14770	SM00847	Helicase associated domain (HA2)  Add an annotation
NW94_RS14835	SM00382	ATPases associated with a variety of cellular activities
NW94_RS14860	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS14860	SM00387	Histidine kinase-like ATPases
NW94_RS14860	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS14865	SM00448	cheY-homologous receiver domain
NW94_RS14865	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS14885	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS14900	SM00382	ATPases associated with a variety of cellular activities
NW94_RS14910	SM00938	Nitrogen regulatory protein P-II
NW94_RS14935	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS15005	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS15015	SM00972	Spore Coat Protein U domain
NW94_RS15020	SM00972	Spore Coat Protein U domain
NW94_RS15185	SM00855	Phosphoglycerate mutase family
NW94_RS15200	SM00382	ATPases associated with a variety of cellular activities
NW94_RS15360	SM01230	NW94_RS15360
NW94_RS15420	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS15420	SM00866	NW94_RS15420
NW94_RS15450	SM00421	helix_turn_helix, Lux Regulon
NW94_RS15560	SM00100	Cyclic nucleotide-monophosphate binding domain
NW94_RS15560	SM00419	helix_turn_helix, cAMP Regulatory protein
NW94_RS15565	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS15570	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS15570	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS15595	SM00382	ATPases associated with a variety of cellular activities
NW94_RS15670	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS15720	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS15725	SM00382	ATPases associated with a variety of cellular activities
NW94_RS15785	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS15845	SM00382	ATPases associated with a variety of cellular activities
NW94_RS15925	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NW94_RS15925	SM00465	GIY-YIG type nucleases (URI domain)
NW94_RS15935	SM00841	Elongation factor P, C-terminal
NW94_RS15935	SM01185	NW94_RS15935
NW94_RS15940	SM00382	ATPases associated with a variety of cellular activities
NW94_RS15940	SM00448	cheY-homologous receiver domain
NW94_RS15970	SM00358	Double-stranded RNA binding motif
NW94_RS15970	SM00535	Ribonuclease III family
NW94_RS15980	SM00838	Elongation factor G C-terminus
NW94_RS15990	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NW94_RS16015	SM00825	Beta-ketoacyl synthase
NW94_RS16025	SM00822	NW94_RS16025
NW94_RS16030	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
NW94_RS16080	SM00363	S4 RNA-binding domain
NW94_RS16090	SM00316	Ribosomal protein S1-like RNA-binding domain
NW94_RS16095	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS16105	SM00852	Probable molybdopterin binding domain
NW94_RS16230	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NW94_RS16255	SM01329	NW94_RS16255
NW94_RS16310	SM00830	Chorismate mutase type II
NW94_RS16485	SM00028	Tetratricopeptide repeats
NW94_RS16510	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
NW94_RS16510	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
NW94_RS16515	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
NW94_RS16580	SM00434	DNA Topoisomerase IV
NW94_RS16595	SM00830	Chorismate mutase type II
NW94_RS16610	SM00316	Ribosomal protein S1-like RNA-binding domain
NW94_RS16615	SM00411	bacterial (prokaryotic) histone like domain
NW94_RS16630	SM00028	Tetratricopeptide repeats
NW94_RS16635	SM00984	UDP binding domain
NW94_RS16650	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NW94_RS16685	SM00382	ATPases associated with a variety of cellular activities
NW94_RS16685	SM00930	NW94_RS16685
NW94_RS16700	SM00893	Electron transfer flavoprotein domain
NW94_RS16705	SM00893	Electron transfer flavoprotein domain
NW94_RS16720	SM00344	helix_turn_helix ASNC type
NW94_RS16725	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS16810	SM00479	NW94_RS16810
NW94_RS16815	SM00852	Probable molybdopterin binding domain
NW94_RS16845	SM00382	ATPases associated with a variety of cellular activities
NW94_RS16865	SM00382	ATPases associated with a variety of cellular activities
NW94_RS16930	SM01207	NW94_RS16930
NW94_RS16965	SM00646	NW94_RS16965
NW94_RS17030	SM00903	Flavin reductase like domain
NW94_RS17035	SM00344	helix_turn_helix ASNC type
NW94_RS17125	SM00382	ATPases associated with a variety of cellular activities
NW94_RS17160	SM00822	NW94_RS17160
NW94_RS17175	SM00382	ATPases associated with a variety of cellular activities
NW94_RS17190	SM00829	Enoylreductase
NW94_RS17195	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS17270	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NW94_RS17280	SM00387	Histidine kinase-like ATPases
NW94_RS17280	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS17285	SM00448	cheY-homologous receiver domain
NW94_RS17285	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS17325	SM01001	AIR carboxylase
NW94_RS17425	SM00387	Histidine kinase-like ATPases
NW94_RS17425	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS17430	SM00448	cheY-homologous receiver domain
NW94_RS17430	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS17435	SM00382	ATPases associated with a variety of cellular activities
NW94_RS17455	SM00881	CoA binding domain
NW94_RS17510	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
NW94_RS17510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS17530	SM00448	cheY-homologous receiver domain
NW94_RS17535	SM00387	Histidine kinase-like ATPases
NW94_RS17555	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
NW94_RS17585	SM00487	DEAD-like helicases superfamily
NW94_RS17585	SM00490	helicase superfamily c-terminal domain
NW94_RS17605	SM00420	helix_turn_helix, Deoxyribose operon repressor
NW94_RS17605	SM01134	NW94_RS17605
NW94_RS17685	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS17705	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS17735	SM01091	Transporter associated domain
NW94_RS17750	SM00836	DALR anticodon binding domain
NW94_RS17760	SM00563	Phosphate acyltransferases
NW94_RS17785	SM00650	Ribosomal RNA adenine dimethylases
NW94_RS17820	SM00382	ATPases associated with a variety of cellular activities
NW94_RS17870	SM00155	Phospholipase D. Active site motifs.
NW94_RS17890	SM00834	Putative regulatory protein
NW94_RS17910	SM00978	NW94_RS17910
NW94_RS17975	SM01119	NW94_RS17975
NW94_RS17985	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS18005	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
NW94_RS18030	SM00845	GatB domain
NW94_RS18075	SM00671	Sel1-like repeats.
NW94_RS18115	SM00448	cheY-homologous receiver domain
NW94_RS18120	SM00091	PAS domain
NW94_RS18120	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS18120	SM00387	Histidine kinase-like ATPases
NW94_RS18120	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS18170	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
NW94_RS18170	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
NW94_RS18170	SM00493	NW94_RS18170
NW94_RS18305	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS18320	SM01322	NW94_RS18320
NW94_RS18415	SM00478	endonuclease III
NW94_RS18415	SM01009	AlkA N-terminal domain
NW94_RS18420	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS18435	SM01322	NW94_RS18435
NW94_RS18470	SM01234	NW94_RS18470
NW94_RS18520	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS18530	SM00829	Enoylreductase
NW94_RS18540	SM00867	YceI-like domain 
NW94_RS18570	SM01329	NW94_RS18570
NW94_RS18630	SM00014	Acid phosphatase homologues
NW94_RS18690	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS18710	SM00100	Cyclic nucleotide-monophosphate binding domain
NW94_RS18710	SM00419	helix_turn_helix, cAMP Regulatory protein
NW94_RS18800	SM00882	Coenzyme A transferase
NW94_RS18805	SM00882	Coenzyme A transferase
NW94_RS18810	SM00998	Adenylosuccinate lyase C-terminus
NW94_RS18900	SM00382	ATPases associated with a variety of cellular activities
NW94_RS18935	SM00528	Domain in histone-like proteins of HNS family
NW94_RS18960	SM00387	Histidine kinase-like ATPases
NW94_RS18960	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS18965	SM00382	ATPases associated with a variety of cellular activities
NW94_RS18965	SM00448	cheY-homologous receiver domain
NW94_RS19005	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS19085	SM00944	Pro-kumamolisin, activation domain
NW94_RS19110	SM00267	diguanylate cyclase
NW94_RS19130	SM00822	NW94_RS19130
NW94_RS19185	SM01133	NW94_RS19185
NW94_RS19210	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
NW94_RS19225	SM00749	bacterial OsmY and nodulation domain
NW94_RS19270	SM00382	ATPases associated with a variety of cellular activities
NW94_RS19320	SM00829	Enoylreductase
NW94_RS19335	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS19335	SM01049	NW94_RS19335
NW94_RS19345	SM00387	Histidine kinase-like ATPases
NW94_RS19345	SM00448	cheY-homologous receiver domain
NW94_RS19355	SM00382	ATPases associated with a variety of cellular activities
NW94_RS19395	SM00382	ATPases associated with a variety of cellular activities
NW94_RS19420	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS19445	SM00749	bacterial OsmY and nodulation domain
NW94_RS19485	SM00829	Enoylreductase
NW94_RS19495	SM00100	Cyclic nucleotide-monophosphate binding domain
NW94_RS19495	SM00419	helix_turn_helix, cAMP Regulatory protein
NW94_RS19505	SM00822	NW94_RS19505
NW94_RS19515	SM00849	Metallo-beta-lactamase superfamily
NW94_RS19515	SM01027	Beta-Casp domain
NW94_RS19540	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS19630	SM00829	Enoylreductase
NW94_RS19805	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS19850	SM00797	Allophanate hydrolase subunit 2
NW94_RS19855	SM00796	Allophanate hydrolase subunit 1
NW94_RS19860	SM00878	Biotin carboxylase C-terminal domain
NW94_RS19935	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS19935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS19945	SM00091	PAS domain
NW94_RS19945	SM00382	ATPases associated with a variety of cellular activities
NW94_RS20000	SM00729	Elongator protein 3, MiaB family, Radical SAM
NW94_RS20010	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS20010	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS20010	SM00319	Homologues of the ligand binding domain of Tar
NW94_RS20190	SM00382	ATPases associated with a variety of cellular activities
NW94_RS20245	SM00382	ATPases associated with a variety of cellular activities
NW94_RS20280	SM00382	ATPases associated with a variety of cellular activities
NW94_RS20300	SM00829	Enoylreductase
NW94_RS20310	SM01120	NW94_RS20310
NW94_RS20455	SM00460	Transglutaminase/protease-like homologues
NW94_RS20460	SM00460	Transglutaminase/protease-like homologues
NW94_RS20475	SM00460	Transglutaminase/protease-like homologues
NW94_RS20480	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS20500	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS20585	SM00937	NW94_RS20585
NW94_RS20625	SM00382	ATPases associated with a variety of cellular activities
NW94_RS20665	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS20715	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NW94_RS20725	SM00986	Uracil DNA glycosylase superfamily
NW94_RS20725	SM00987	UreE urease accessory protein, C-terminal domain 
NW94_RS20730	SM01118	NW94_RS20730
NW94_RS20785	SM00925	MltA specific insert domain
NW94_RS20920	SM00226	Low molecular weight phosphatase family
NW94_RS20930	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NW94_RS20970	SM00382	ATPases associated with a variety of cellular activities
NW94_RS20980	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS21035	SM01007	Class II Aldolase and Adducin N-terminal domain
NW94_RS21050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS21050	SM00895	NW94_RS21050
NW94_RS21105	SM00421	helix_turn_helix, Lux Regulon
NW94_RS21210	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS21210	SM00895	NW94_RS21210
NW94_RS21265	SM00421	helix_turn_helix, Lux Regulon
NW94_RS21265	SM00448	cheY-homologous receiver domain
NW94_RS21295	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS21390	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS21400	SM00382	ATPases associated with a variety of cellular activities
NW94_RS21410	SM00858	NW94_RS21410
NW94_RS21440	SM00822	NW94_RS21440
NW94_RS21515	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS21525	SM00052	Putative diguanylate phosphodiesterase
NW94_RS21575	SM00052	Putative diguanylate phosphodiesterase
NW94_RS21575	SM00267	diguanylate cyclase
NW94_RS21585	SM00344	helix_turn_helix ASNC type
NW94_RS21655	SM00091	PAS domain
NW94_RS21655	SM00387	Histidine kinase-like ATPases
NW94_RS21660	SM00448	cheY-homologous receiver domain
NW94_RS21675	SM01359	NW94_RS21675
NW94_RS21675	SM01360	NW94_RS21675
NW94_RS21775	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS21805	SM00421	helix_turn_helix, Lux Regulon
NW94_RS21805	SM00448	cheY-homologous receiver domain
NW94_RS21890	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS21895	SM00528	Domain in histone-like proteins of HNS family
NW94_RS21980	SM00382	ATPases associated with a variety of cellular activities
NW94_RS22005	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NW94_RS22100	SM00487	DEAD-like helicases superfamily
NW94_RS22100	SM00490	helicase superfamily c-terminal domain
NW94_RS22215	SM00421	helix_turn_helix, Lux Regulon
NW94_RS22240	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS22270	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NW94_RS22300	SM00116	Domain in cystathionine beta-synthase and other proteins.
NW94_RS22330	SM00421	helix_turn_helix, Lux Regulon
NW94_RS22360	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS22405	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS22480	SM00344	helix_turn_helix ASNC type
NW94_RS22565	SM00822	NW94_RS22565
NW94_RS22585	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS22590	SM00422	helix_turn_helix, mercury resistance
NW94_RS22610	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS22610	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS22715	SM00257	Lysin motif
NW94_RS22750	SM00382	ATPases associated with a variety of cellular activities
NW94_RS22755	SM00382	ATPases associated with a variety of cellular activities
NW94_RS22830	SM00869	Autotransporter beta-domain
NW94_RS22855	SM00835	Cupin
NW94_RS22885	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS22900	SM00831	Cation transporter/ATPase, N-terminus
NW94_RS22965	SM00382	ATPases associated with a variety of cellular activities
NW94_RS23055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS23055	SM00387	Histidine kinase-like ATPases
NW94_RS23055	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS23060	SM00448	cheY-homologous receiver domain
NW94_RS23060	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS23130	SM00382	ATPases associated with a variety of cellular activities
NW94_RS23180	SM00320	WD40 repeats
NW94_RS23285	SM00420	helix_turn_helix, Deoxyribose operon repressor
NW94_RS23285	SM01134	NW94_RS23285
NW94_RS23335	SM00829	Enoylreductase
NW94_RS23340	SM00382	ATPases associated with a variety of cellular activities
NW94_RS23345	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS23375	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
NW94_RS23410	SM00448	cheY-homologous receiver domain
NW94_RS23410	SM01012	NW94_RS23410
NW94_RS23490	SM00822	NW94_RS23490
NW94_RS23520	SM00829	Enoylreductase
NW94_RS23590	SM00823	Phosphopantetheine attachment site
NW94_RS23595	SM00923	MbtH-like protein
NW94_RS23605	SM00824	Thioesterase
NW94_RS23670	SM00267	diguanylate cyclase
NW94_RS23735	SM00382	ATPases associated with a variety of cellular activities
NW94_RS23805	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NW94_RS23840	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS23855	SM00344	helix_turn_helix ASNC type
NW94_RS23870	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS23870	SM00866	NW94_RS23870
NW94_RS23935	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NW94_RS23965	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS23975	SM00450	Rhodanese Homology Domain
NW94_RS24100	SM00267	diguanylate cyclase
NW94_RS24165	SM00382	ATPases associated with a variety of cellular activities
NW94_RS24235	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NW94_RS24270	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS24285	SM00344	helix_turn_helix ASNC type
NW94_RS24300	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS24300	SM00866	NW94_RS24300
NW94_RS24365	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NW94_RS24395	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS24405	SM00450	Rhodanese Homology Domain
NW94_RS24525	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
NW94_RS24525	SM00091	PAS domain
NW94_RS24525	SM00387	Histidine kinase-like ATPases
NW94_RS24525	SM00448	cheY-homologous receiver domain
NW94_RS24530	SM00448	cheY-homologous receiver domain
NW94_RS24535	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
NW94_RS24535	SM00091	PAS domain
NW94_RS24535	SM00387	Histidine kinase-like ATPases
NW94_RS24535	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS24580	SM00357	Cold shock protein domain
NW94_RS24610	SM00905	Dihydroneopterin aldolase
NW94_RS24770	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS24865	SM00387	Histidine kinase-like ATPases
NW94_RS24865	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS24870	SM00448	cheY-homologous receiver domain
NW94_RS24870	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS24885	SM00382	ATPases associated with a variety of cellular activities
NW94_RS24895	SM00829	Enoylreductase
NW94_RS24900	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS24940	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS24955	SM00448	cheY-homologous receiver domain
NW94_RS24955	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS24960	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS24960	SM00387	Histidine kinase-like ATPases
NW94_RS24960	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS25015	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS25025	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
NW94_RS25050	SM00421	helix_turn_helix, Lux Regulon
NW94_RS25065	SM00421	helix_turn_helix, Lux Regulon
NW94_RS25155	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
NW94_RS25205	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS25210	SM00450	Rhodanese Homology Domain
NW94_RS25235	SM00448	cheY-homologous receiver domain
NW94_RS25235	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS25240	SM00387	Histidine kinase-like ATPases
NW94_RS25240	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS25295	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NW94_RS25320	SM00387	Histidine kinase-like ATPases
NW94_RS25320	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS25325	SM00448	cheY-homologous receiver domain
NW94_RS25325	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS25380	SM00878	Biotin carboxylase C-terminal domain
NW94_RS25380	SM01209	NW94_RS25380
NW94_RS25455	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
NW94_RS25495	SM00387	Histidine kinase-like ATPases
NW94_RS25495	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS25500	SM00448	cheY-homologous receiver domain
NW94_RS25500	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS25540	SM01150	NW94_RS25540
NW94_RS25580	SM00155	Phospholipase D. Active site motifs.
NW94_RS25590	SM00420	helix_turn_helix, Deoxyribose operon repressor
NW94_RS25590	SM01134	NW94_RS25590
NW94_RS25615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS25615	SM00895	NW94_RS25615
NW94_RS25620	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
NW94_RS25625	SM00829	Enoylreductase
NW94_RS25700	SM00644	NW94_RS25700
NW94_RS25725	SM00448	cheY-homologous receiver domain
NW94_RS25725	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS25730	SM00387	Histidine kinase-like ATPases
NW94_RS25770	SM00382	ATPases associated with a variety of cellular activities
NW94_RS25770	SM01086	C-terminal, D2-small domain, of ClpB protein
NW94_RS25875	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS25905	SM01130	NW94_RS25905
NW94_RS25980	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS25980	SM00895	NW94_RS25980
NW94_RS26015	SM00382	ATPases associated with a variety of cellular activities
NW94_RS26015	SM00930	NW94_RS26015
NW94_RS26035	SM00421	helix_turn_helix, Lux Regulon
NW94_RS26060	SM00508	Cysteine-rich motif following a subset of SET domains
NW94_RS26090	SM00822	NW94_RS26090
NW94_RS26090	SM00823	Phosphopantetheine attachment site
NW94_RS26090	SM00825	Beta-ketoacyl synthase
NW94_RS26090	SM00826	NW94_RS26090
NW94_RS26090	SM01294	NW94_RS26090
NW94_RS26095	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
NW94_RS26120	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
NW94_RS26150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS26150	SM00895	NW94_RS26150
NW94_RS26250	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS26260	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS26310	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS26335	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS26370	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS26470	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS26485	SM00421	helix_turn_helix, Lux Regulon
NW94_RS26485	SM00448	cheY-homologous receiver domain
NW94_RS26535	SM00528	Domain in histone-like proteins of HNS family
NW94_RS26590	SM00382	ATPases associated with a variety of cellular activities
NW94_RS26615	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS26665	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS26700	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS26740	SM00944	Pro-kumamolisin, activation domain
NW94_RS26750	SM00344	helix_turn_helix ASNC type
NW94_RS26805	SM00421	helix_turn_helix, Lux Regulon
NW94_RS26835	SM00382	ATPases associated with a variety of cellular activities
NW94_RS26880	SM00028	Tetratricopeptide repeats
NW94_RS26900	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS27030	SM00382	ATPases associated with a variety of cellular activities
NW94_RS27040	SM00448	cheY-homologous receiver domain
NW94_RS27040	SM00862	Transcriptional regulatory protein, C terminal
NW94_RS27045	SM00387	Histidine kinase-like ATPases
NW94_RS27080	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS27170	SM00382	ATPases associated with a variety of cellular activities
NW94_RS27205	SM00824	Thioesterase
NW94_RS27295	SM00387	Histidine kinase-like ATPases
NW94_RS27295	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS27300	SM00897	FIST N domain
NW94_RS27300	SM01204	NW94_RS27300
NW94_RS27305	SM00448	cheY-homologous receiver domain
NW94_RS27320	SM00458	Ricin-type beta-trefoil
NW94_RS27380	SM01217	NW94_RS27380
NW94_RS27455	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS27465	SM00382	ATPases associated with a variety of cellular activities
NW94_RS27485	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS27535	SM00411	bacterial (prokaryotic) histone like domain
NW94_RS27685	SM00859	Semialdehyde dehydrogenase, NAD binding domain
NW94_RS27695	SM01329	NW94_RS27695
NW94_RS27745	SM00344	helix_turn_helix ASNC type
NW94_RS27785	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS27825	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS27825	SM00866	NW94_RS27825
NW94_RS27855	SM00912	haemagglutination activity domain
NW94_RS27895	SM00382	ATPases associated with a variety of cellular activities
NW94_RS27900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NW94_RS27935	SM00257	Lysin motif
NW94_RS27950	SM01350	NW94_RS27950
NW94_RS28010	SM00382	ATPases associated with a variety of cellular activities
NW94_RS28010	SM01086	C-terminal, D2-small domain, of ClpB protein
NW94_RS28050	SM00219	Tyrosine kinase, catalytic domain
NW94_RS28160	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NW94_RS28160	SM00450	Rhodanese Homology Domain
NW94_RS28165	SM00849	Metallo-beta-lactamase superfamily
NW94_RS28225	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS28240	SM00881	CoA binding domain
NW94_RS28255	SM00528	Domain in histone-like proteins of HNS family
NW94_RS28270	SM00382	ATPases associated with a variety of cellular activities
NW94_RS28295	SM00450	Rhodanese Homology Domain
NW94_RS28310	SM00382	ATPases associated with a variety of cellular activities
NW94_RS28315	SM00382	ATPases associated with a variety of cellular activities
NW94_RS28335	SM00530	Helix-turn-helix XRE-family like proteins 
NW94_RS28405	SM00400	zinc finger
NW94_RS28405	SM00493	NW94_RS28405
NW94_RS28405	SM00766	DNA primase DnaG DnaB-binding
NW94_RS28440	SM00861	Transketolase, pyrimidine binding domain
NW94_RS28465	SM00450	Rhodanese Homology Domain
NW94_RS28495	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
NW94_RS28495	SM00474	3'-5' exonuclease
NW94_RS28495	SM00475	5'-3' exonuclease
NW94_RS28495	SM00482	DNA polymerase A domain
NW94_RS28595	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS28615	SM00014	Acid phosphatase homologues
NW94_RS28630	SM00382	ATPases associated with a variety of cellular activities
NW94_RS28655	SM00880	NW94_RS28655
NW94_RS28675	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS28680	SM00116	Domain in cystathionine beta-synthase and other proteins.
NW94_RS28680	SM01091	Transporter associated domain
NW94_RS28730	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS28795	SM00644	NW94_RS28795
NW94_RS28895	SM00829	Enoylreductase
NW94_RS28910	SM00822	NW94_RS28910
NW94_RS28925	SM00855	Phosphoglycerate mutase family
NW94_RS28990	SM00382	ATPases associated with a variety of cellular activities
NW94_RS29000	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS29050	SM00448	cheY-homologous receiver domain
NW94_RS29055	SM00073	Histidine Phosphotransfer domain
NW94_RS29055	SM00260	Two component signalling adaptor domain
NW94_RS29055	SM00387	Histidine kinase-like ATPases
NW94_RS29055	SM00448	cheY-homologous receiver domain
NW94_RS29060	SM00260	Two component signalling adaptor domain
NW94_RS29065	SM00028	Tetratricopeptide repeats
NW94_RS29065	SM00138	Methyltransferase, chemotaxis proteins 
NW94_RS29070	SM00260	Two component signalling adaptor domain
NW94_RS29075	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
NW94_RS29075	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NW94_RS29080	SM00387	Histidine kinase-like ATPases
NW94_RS29080	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS29080	SM00448	cheY-homologous receiver domain
NW94_RS29125	SM00155	Phospholipase D. Active site motifs.
NW94_RS29155	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS29165	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
NW94_RS29210	SM00342	helix_turn_helix, arabinose operon control protein
NW94_RS29260	SM00347	helix_turn_helix multiple antibiotic resistance protein
NW94_RS29325	SM00346	helix_turn_helix isocitrate lyase regulation
NW94_RS29475	SM00822	NW94_RS29475
NW94_RS29495	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
NW94_RS29495	SM00091	PAS domain
NW94_RS29495	SM00387	Histidine kinase-like ATPases
NW94_RS29495	SM00388	His Kinase A (phosphoacceptor) domain
NW94_RS29495	SM00448	cheY-homologous receiver domain
NW94_RS29510	SM00382	ATPases associated with a variety of cellular activities
NW94_RS29510	SM00448	cheY-homologous receiver domain
NW94_RS29525	SM00382	ATPases associated with a variety of cellular activities
NW94_RS29570	SM00382	ATPases associated with a variety of cellular activities
NW94_RS29570	SM00448	cheY-homologous receiver domain
NW94_RS29640	SM00903	Flavin reductase like domain
NW94_RS29670	SM00861	Transketolase, pyrimidine binding domain
NW94_RS29790	SM00116	Domain in cystathionine beta-synthase and other proteins.
NW94_RS29830	SM00421	helix_turn_helix, Lux Regulon
NW94_RS29840	SM00829	Enoylreductase
NW94_RS29865	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
NW94_RS30020	SM00387	Histidine kinase-like ATPases
NW94_RS30020	SM01049	NW94_RS30020
NW94_RS30025	SM00421	helix_turn_helix, Lux Regulon
NW94_RS30025	SM00448	cheY-homologous receiver domain
NW94_RS30065	SM00052	Putative diguanylate phosphodiesterase
NW94_RS30065	SM00267	diguanylate cyclase
NW94_RS30110	SM00382	ATPases associated with a variety of cellular activities
NW94_RS30120	SM00822	NW94_RS30120
NW94_RS30125	SM00822	NW94_RS30125
NW94_RS30125	SM00825	Beta-ketoacyl synthase
NW94_RS30130	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
NW94_RS30160	SM00382	ATPases associated with a variety of cellular activities
NW94_RS30170	SM00062	Bacterial periplasmic substrate-binding proteins
NW94_RS30170	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NW94_RS30210	SM00091	PAS domain
NW94_RS30210	SM00267	diguanylate cyclase
NW94_RS30220	SM00448	cheY-homologous receiver domain
NW94_RS30230	SM00387	Histidine kinase-like ATPases
NW94_RS30230	SM00448	cheY-homologous receiver domain
NW94_RS30260	SM00470	ParB-like nuclease domain
