locus-tag class description AMS56_RS00005 PF00750 tRNA synthetases class I (R) AMS56_RS00005 PF03485 Arginyl tRNA synthetase N terminal domain AMS56_RS00005 PF05746 DALR anticodon binding domain AMS56_RS00015 PF13462 Thioredoxin AMS56_RS00020 PF00106 short chain dehydrogenase AMS56_RS00040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS56_RS00045 PF00005 ABC transporter AMS56_RS00045 PF16326 ABC transporter C-terminal domain AMS56_RS00045 PF12848 ABC transporter AMS56_RS00055 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMS56_RS00060 PF00484 Carbonic anhydrase AMS56_RS00065 PF00108 Thiolase, N-terminal domain AMS56_RS00065 PF02803 Thiolase, C-terminal domain AMS56_RS00085 PF00202 Aminotransferase class-III AMS56_RS00090 PF00155 Aminotransferase class I and II AMS56_RS00100 PF04055 Radical SAM superfamily AMS56_RS00100 PF06968 Biotin and Thiamin Synthesis associated domain AMS56_RS00105 PF03932 CutC family AMS56_RS00115 PF00245 Alkaline phosphatase AMS56_RS00120 PF00245 Alkaline phosphatase AMS56_RS00130 PF00563 EAL domain AMS56_RS00130 PF05231 MASE1 AMS56_RS00135 PF00999 Sodium/hydrogen exchanger family AMS56_RS00145 PF07885 Ion channel AMS56_RS00145 PF17655 Inward rectifier potassium channel C-terminal domain AMS56_RS00170 PF00158 Sigma-54 interaction domain AMS56_RS00170 PF06956 Regulator of RNA terminal phosphate cyclase AMS56_RS00185 PF13340 Putative transposase of IS4/5 family (DUF4096) AMS56_RS00195 PF00701 Dihydrodipicolinate synthetase family AMS56_RS00210 PF02630 SCO1/SenC AMS56_RS00230 PF01037 Lrp/AsnC ligand binding domain AMS56_RS00240 PF05506 Domain of unknown function (DUF756) AMS56_RS00240 PF04185 Phosphoesterase family AMS56_RS00260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS56_RS00265 PF00682 HMGL-like AMS56_RS00285 PF01037 Lrp/AsnC ligand binding domain AMS56_RS00285 PF13404 AsnC-type helix-turn-helix domain AMS56_RS00290 PF00561 alpha/beta hydrolase fold AMS56_RS00300 PF03466 LysR substrate binding domain AMS56_RS00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS00305 PF13609 Gram-negative porin AMS56_RS00315 PF13593 SBF-like CPA transporter family (DUF4137) AMS56_RS00320 PF02203 Tar ligand binding domain homologue AMS56_RS00320 PF00672 HAMP domain AMS56_RS00320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS00325 PF00356 Bacterial regulatory proteins, lacI family AMS56_RS00335 PF00294 pfkB family carbohydrate kinase AMS56_RS00365 PF01171 PP-loop family AMS56_RS00375 PF12804 MobA-like NTP transferase domain AMS56_RS00375 PF00132 Bacterial transferase hexapeptide (six repeats) AMS56_RS00380 PF01380 SIS domain AMS56_RS00400 PF00873 AcrB/AcrD/AcrF family AMS56_RS00405 PF00529 HlyD membrane-fusion protein of T1SS AMS56_RS00405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS00425 PF04536 TPM domain AMS56_RS00430 PF04011 LemA family AMS56_RS00435 PF04945 YHS domain AMS56_RS00460 PF00764 Arginosuccinate synthase AMS56_RS00465 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS56_RS00465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMS56_RS00520 PF13609 Gram-negative porin AMS56_RS00530 PF08274 PhnA Zinc-Ribbon AMS56_RS00530 PF03831 PhnA domain AMS56_RS00550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS00550 PF03466 LysR substrate binding domain AMS56_RS00555 PF00860 Permease family AMS56_RS00560 PF00669 Bacterial flagellin N-terminal helical region AMS56_RS00565 PF00460 Flagella basal body rod protein AMS56_RS00565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS56_RS00570 PF07317 Flagellar regulator YcgR AMS56_RS00570 PF07238 PilZ domain AMS56_RS00575 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMS56_RS00575 PF10135 Rod binding protein AMS56_RS00580 PF02119 Flagellar P-ring protein AMS56_RS00585 PF02107 Flagellar L-ring protein AMS56_RS00590 PF00460 Flagella basal body rod protein AMS56_RS00590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS56_RS00595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS56_RS00595 PF00460 Flagella basal body rod protein AMS56_RS00600 PF07559 Flagellar basal body protein FlaE AMS56_RS00600 PF00460 Flagella basal body rod protein AMS56_RS00600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS56_RS00605 PF13860 FlgD Ig-like domain AMS56_RS00605 PF03963 Flagellar hook capping protein - N-terminal region AMS56_RS00605 PF13861 FlgD Tudor-like domain AMS56_RS00610 PF00460 Flagella basal body rod protein AMS56_RS00610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS56_RS00615 PF00460 Flagella basal body rod protein AMS56_RS00620 PF17656 FlgA N-terminal domain AMS56_RS00620 PF13144 Chaperone for flagella basal body P-ring formation AMS56_RS00625 PF04316 Anti-sigma-28 factor, FlgM AMS56_RS00640 PF01966 HD domain AMS56_RS00640 PF01743 Poly A polymerase head domain AMS56_RS00640 PF12627 Probable RNA and SrmB- binding site of polymerase A AMS56_RS00655 PF14718 Soluble lytic murein transglycosylase L domain AMS56_RS00655 PF01464 Transglycosylase SLT domain AMS56_RS00660 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMS56_RS00670 PF02682 Carboxyltransferase domain, subdomain C and D AMS56_RS00675 PF02626 Carboxyltransferase domain, subdomain A and B AMS56_RS00680 PF03746 LamB/YcsF family AMS56_RS00705 PF00005 ABC transporter AMS56_RS00705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS56_RS00710 PF00005 ABC transporter AMS56_RS00710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS56_RS00715 PF12911 N-terminal TM domain of oligopeptide transport permease C AMS56_RS00715 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS00720 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS00725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS56_RS00730 PF07690 Major Facilitator Superfamily AMS56_RS00735 PF01355 High potential iron-sulfur protein AMS56_RS00740 PF01266 FAD dependent oxidoreductase AMS56_RS00745 PF00004 ATPase family associated with various cellular activities (AAA) AMS56_RS00745 PF05362 Lon protease (S16) C-terminal proteolytic domain AMS56_RS00760 PF03372 Endonuclease/Exonuclease/phosphatase family AMS56_RS00765 PF01810 LysE type translocator AMS56_RS00770 PF00175 Oxidoreductase NAD-binding domain AMS56_RS00770 PF00970 Oxidoreductase FAD-binding domain AMS56_RS00780 PF00072 Response regulator receiver domain AMS56_RS00780 PF00196 Bacterial regulatory proteins, luxR family AMS56_RS00785 PF13520 Amino acid permease AMS56_RS00800 PF01312 FlhB HrpN YscU SpaS Family AMS56_RS00815 PF02561 Flagellar protein FliS AMS56_RS00820 PF02049 Flagellar hook-basal body complex protein FliE AMS56_RS00825 PF01514 Secretory protein of YscJ/FliF family AMS56_RS00825 PF08345 Flagellar M-ring protein C-terminal AMS56_RS00830 PF01706 FliG C-terminal domain AMS56_RS00830 PF14841 FliG middle domain AMS56_RS00830 PF14842 FliG N-terminal domain AMS56_RS00840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS56_RS00840 PF18269 T3SS EscN ATPase C-terminal domain AMS56_RS00855 PF05199 GMC oxidoreductase AMS56_RS00855 PF00732 GMC oxidoreductase AMS56_RS00860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS00860 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS00860 PF18158 Adaptive response protein AidB N-terminal domain AMS56_RS00865 PF00171 Aldehyde dehydrogenase family AMS56_RS00875 PF01636 Phosphotransferase enzyme family AMS56_RS00885 PF07690 Major Facilitator Superfamily AMS56_RS00890 PF00892 EamA-like transporter family AMS56_RS00900 PF00248 Aldo/keto reductase family AMS56_RS00920 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMS56_RS00920 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMS56_RS00920 PF02772 S-adenosylmethionine synthetase, central domain AMS56_RS00925 PF03279 Bacterial lipid A biosynthesis acyltransferase AMS56_RS00930 PF01678 Diaminopimelate epimerase AMS56_RS00940 PF00589 Phage integrase family AMS56_RS00940 PF02899 Phage integrase, N-terminal SAM-like domain AMS56_RS00945 PF10672 S-adenosylmethionine-dependent methyltransferase AMS56_RS00945 PF17785 PUA-like domain AMS56_RS00950 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMS56_RS00950 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMS56_RS00955 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMS56_RS00960 PF00227 Proteasome subunit AMS56_RS00965 PF07724 AAA domain (Cdc48 subfamily) AMS56_RS00965 PF00004 ATPase family associated with various cellular activities (AAA) AMS56_RS00970 PF00072 Response regulator receiver domain AMS56_RS00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS00975 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS00985 PF00696 Amino acid kinase family AMS56_RS00995 PF00440 Bacterial regulatory proteins, tetR family AMS56_RS01000 PF00561 alpha/beta hydrolase fold AMS56_RS01010 PF07690 Major Facilitator Superfamily AMS56_RS01020 PF06719 AraC-type transcriptional regulator N-terminus AMS56_RS01020 PF12833 Helix-turn-helix domain AMS56_RS01025 PF08240 Alcohol dehydrogenase GroES-like domain AMS56_RS01025 PF00107 Zinc-binding dehydrogenase AMS56_RS01030 PF03372 Endonuclease/Exonuclease/phosphatase family AMS56_RS01035 PF03976 Polyphosphate kinase 2 (PPK2) AMS56_RS01040 PF02934 GatB/GatE catalytic domain AMS56_RS01040 PF02637 GatB domain AMS56_RS01045 PF01425 Amidase AMS56_RS01050 PF02686 Glu-tRNAGln amidotransferase C subunit AMS56_RS01070 PF00905 Penicillin binding protein transpeptidase domain AMS56_RS01070 PF03717 Penicillin-binding Protein dimerisation domain AMS56_RS01075 PF01098 Cell cycle protein AMS56_RS01085 PF03328 HpcH/HpaI aldolase/citrate lyase family AMS56_RS01090 PF01242 6-pyruvoyl tetrahydropterin synthase AMS56_RS01100 PF06508 Queuosine biosynthesis protein QueC AMS56_RS01205 PF01555 DNA methylase AMS56_RS01355 PF00072 Response regulator receiver domain AMS56_RS01355 PF02954 Bacterial regulatory protein, Fis family AMS56_RS01355 PF00158 Sigma-54 interaction domain AMS56_RS01360 PF00989 PAS fold AMS56_RS01360 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS01360 PF00672 HAMP domain AMS56_RS01360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS01370 PF01029 NusB family AMS56_RS01370 PF01189 16S rRNA methyltransferase RsmB/F AMS56_RS01380 PF01435 Peptidase family M48 AMS56_RS01385 PF01810 LysE type translocator AMS56_RS01390 PF00551 Formyl transferase AMS56_RS01390 PF02911 Formyl transferase, C-terminal domain AMS56_RS01395 PF01327 Polypeptide deformylase AMS56_RS01400 PF17782 DprA winged helix domain AMS56_RS01400 PF02481 DNA recombination-mediator protein A AMS56_RS01410 PF01751 Toprim domain AMS56_RS01410 PF01131 DNA topoisomerase AMS56_RS01415 PF03466 LysR substrate binding domain AMS56_RS01415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS01420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS56_RS01420 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS56_RS01460 PF00795 Carbon-nitrogen hydrolase AMS56_RS01465 PF00850 Histone deacetylase domain AMS56_RS01470 PF13416 Bacterial extracellular solute-binding protein AMS56_RS01475 PF03466 LysR substrate binding domain AMS56_RS01475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS01495 PF04546 Sigma-70, non-essential region AMS56_RS01495 PF04545 Sigma-70, region 4 AMS56_RS01495 PF04539 Sigma-70 region 3 AMS56_RS01495 PF03979 Sigma-70 factor, region 1.1 AMS56_RS01495 PF04542 Sigma-70 region 2 AMS56_RS01495 PF00140 Sigma-70 factor, region 1.2 AMS56_RS01500 PF04262 Glutamate-cysteine ligase AMS56_RS01505 PF06029 AlkA N-terminal domain AMS56_RS01505 PF12833 Helix-turn-helix domain AMS56_RS01505 PF00730 HhH-GPD superfamily base excision DNA repair protein AMS56_RS01505 PF02805 Metal binding domain of Ada AMS56_RS01510 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMS56_RS01510 PF12833 Helix-turn-helix domain AMS56_RS01510 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMS56_RS01510 PF02805 Metal binding domain of Ada AMS56_RS01520 PF07152 YaeQ protein AMS56_RS01530 PF13302 Acetyltransferase (GNAT) domain AMS56_RS01560 PF00239 Resolvase, N terminal domain AMS56_RS01560 PF02796 Helix-turn-helix domain of resolvase AMS56_RS01605 PF13362 Toprim domain AMS56_RS01605 PF18818 Metallopeptidase superfamily domain AMS56_RS01605 PF08401 Domain of unknown function (DUF1738) AMS56_RS01615 PF13356 Arm DNA-binding domain AMS56_RS01615 PF00589 Phage integrase family AMS56_RS01620 PF12631 MnmE helical domain AMS56_RS01620 PF01926 50S ribosome-binding GTPase AMS56_RS01620 PF10396 GTP-binding protein TrmE N-terminus AMS56_RS01630 PF14849 YidC periplasmic domain AMS56_RS01630 PF02096 60Kd inner membrane protein AMS56_RS01635 PF01809 Putative membrane protein insertion efficiency factor AMS56_RS01640 PF00825 Ribonuclease P AMS56_RS01645 PF00468 Ribosomal protein L34 AMS56_RS01650 PF00308 Bacterial dnaA protein AMS56_RS01650 PF11638 DnaA N-terminal domain AMS56_RS01650 PF08299 Bacterial dnaA protein helix-turn-helix AMS56_RS01655 PF00712 DNA polymerase III beta subunit, N-terminal domain AMS56_RS01655 PF02768 DNA polymerase III beta subunit, C-terminal domain AMS56_RS01655 PF02767 DNA polymerase III beta subunit, central domain AMS56_RS01660 PF01751 Toprim domain AMS56_RS01660 PF00986 DNA gyrase B subunit, carboxyl terminus AMS56_RS01660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS01660 PF00204 DNA gyrase B AMS56_RS01660 PF18053 DNA gyrase B subunit insert domain AMS56_RS01665 PF13276 HTH-like domain AMS56_RS01665 PF13683 Integrase core domain AMS56_RS01670 PF01527 Transposase AMS56_RS01675 PF01527 Transposase AMS56_RS01685 PF00199 Catalase AMS56_RS01690 PF08281 Sigma-70, region 4 AMS56_RS01690 PF04542 Sigma-70 region 2 AMS56_RS01725 PF02515 CoA-transferase family III AMS56_RS01730 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMS56_RS01730 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMS56_RS01730 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS01735 PF00108 Thiolase, N-terminal domain AMS56_RS01735 PF02803 Thiolase, C-terminal domain AMS56_RS01740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS01740 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS01740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS01765 PF03551 Transcriptional regulator PadR-like family AMS56_RS01770 PF00732 GMC oxidoreductase AMS56_RS01770 PF05199 GMC oxidoreductase AMS56_RS01780 PF10703 MoaF N-terminal domain AMS56_RS01780 PF17409 MoaF C-terminal domain AMS56_RS01790 PF00171 Aldehyde dehydrogenase family AMS56_RS01805 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS01805 PF11862 Domain of unknown function (DUF3382) AMS56_RS01810 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMS56_RS01810 PF00005 ABC transporter AMS56_RS01820 PF00005 ABC transporter AMS56_RS01830 PF13609 Gram-negative porin AMS56_RS01840 PF08774 VRR-NUC domain AMS56_RS01840 PF04851 Type III restriction enzyme, res subunit AMS56_RS01845 PF01555 DNA methylase AMS56_RS01845 PF18273 Type III R-M EcoP15I C-terminal domain AMS56_RS01850 PF13609 Gram-negative porin AMS56_RS01855 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS01855 PF00072 Response regulator receiver domain AMS56_RS01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS01860 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS01865 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS01870 PF00005 ABC transporter AMS56_RS01885 PF13649 Methyltransferase domain AMS56_RS01890 PF09278 MerR, DNA binding AMS56_RS01890 PF00376 MerR family regulatory protein AMS56_RS01895 PF01311 Bacterial export proteins, family 1 AMS56_RS01900 PF01313 Bacterial export proteins, family 3 AMS56_RS01905 PF00813 FliP family AMS56_RS01910 PF04347 Flagellar biosynthesis protein, FliO AMS56_RS01915 PF16973 Flagellar motor switch protein FliN N-terminal AMS56_RS01915 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMS56_RS01920 PF02154 Flagellar motor switch protein FliM AMS56_RS01920 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMS56_RS01930 PF04172 LrgB-like family AMS56_RS01935 PF03788 LrgA family AMS56_RS01940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS01940 PF03466 LysR substrate binding domain AMS56_RS01945 PF07690 Major Facilitator Superfamily AMS56_RS01950 PF01047 MarR family AMS56_RS01960 PF02321 Outer membrane efflux protein AMS56_RS01980 PF03934 Type II secretion system (T2SS), protein K AMS56_RS01990 PF02501 Type II secretion system (T2SS), protein I AMS56_RS01990 PF07963 Prokaryotic N-terminal methylation motif AMS56_RS01995 PF07963 Prokaryotic N-terminal methylation motif AMS56_RS01995 PF12019 Type II transport protein GspH AMS56_RS02000 PF07963 Prokaryotic N-terminal methylation motif AMS56_RS02000 PF08334 Type II secretion system (T2SS), protein G AMS56_RS02010 PF00482 Type II secretion system (T2SS), protein F AMS56_RS02015 PF00437 Type II/IV secretion system protein AMS56_RS02020 PF00263 Bacterial type II and III secretion system protein AMS56_RS02020 PF03958 Bacterial type II/III secretion system short domain AMS56_RS02025 PF01464 Transglycosylase SLT domain AMS56_RS02030 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMS56_RS02030 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMS56_RS02035 PF00216 Bacterial DNA-binding protein AMS56_RS02040 PF01266 FAD dependent oxidoreductase AMS56_RS02040 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMS56_RS02050 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMS56_RS02060 PF00117 Glutamine amidotransferase class-I AMS56_RS02060 PF00958 GMP synthase C terminal domain AMS56_RS02060 PF02540 NAD synthase AMS56_RS02065 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMS56_RS02080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS02080 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS02080 PF08521 Two-component sensor kinase N-terminal AMS56_RS02085 PF00072 Response regulator receiver domain AMS56_RS02085 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS02095 PF01329 Pterin 4 alpha carbinolamine dehydratase AMS56_RS02100 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMS56_RS02105 PF01037 Lrp/AsnC ligand binding domain AMS56_RS02115 PF03466 LysR substrate binding domain AMS56_RS02115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS02120 PF00171 Aldehyde dehydrogenase family AMS56_RS02125 PF00732 GMC oxidoreductase AMS56_RS02125 PF05199 GMC oxidoreductase AMS56_RS02130 PF00005 ABC transporter AMS56_RS02130 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMS56_RS02135 PF00005 ABC transporter AMS56_RS02145 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS02170 PF00005 ABC transporter AMS56_RS02170 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMS56_RS02175 PF00005 ABC transporter AMS56_RS02180 PF01134 Glucose inhibited division protein A AMS56_RS02180 PF13932 GidA associated domain AMS56_RS02185 PF02527 rRNA small subunit methyltransferase G AMS56_RS02190 PF13614 AAA domain AMS56_RS02195 PF02195 ParB-like nuclease domain AMS56_RS02195 PF17762 HTH domain found in ParB protein AMS56_RS02200 PF03600 Citrate transporter AMS56_RS02210 PF00119 ATP synthase A chain AMS56_RS02215 PF00137 ATP synthase subunit C AMS56_RS02220 PF00430 ATP synthase B/B' CF(0) AMS56_RS02225 PF00213 ATP synthase delta (OSCP) subunit AMS56_RS02230 PF00306 ATP synthase alpha/beta chain, C terminal domain AMS56_RS02230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS56_RS02230 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMS56_RS02235 PF00231 ATP synthase AMS56_RS02240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS56_RS02240 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMS56_RS02245 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMS56_RS02245 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMS56_RS02250 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS02250 PF00501 AMP-binding enzyme AMS56_RS02255 PF13380 CoA binding domain AMS56_RS02260 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS56_RS02265 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMS56_RS02270 PF00271 Helicase conserved C-terminal domain AMS56_RS02270 PF17764 3′ DNA-binding domain (3′BD) AMS56_RS02270 PF18074 Primosomal protein N C-terminal domain AMS56_RS02270 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMS56_RS02270 PF00270 DEAD/DEAH box helicase AMS56_RS02280 PF00171 Aldehyde dehydrogenase family AMS56_RS02280 PF01619 Proline dehydrogenase AMS56_RS02280 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMS56_RS02280 PF14850 DNA-binding domain of Proline dehydrogenase AMS56_RS02285 PF13458 Periplasmic binding protein AMS56_RS02290 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS02290 PF00501 AMP-binding enzyme AMS56_RS02295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS02295 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS02295 PF18158 Adaptive response protein AidB N-terminal domain AMS56_RS02305 PF00155 Aminotransferase class I and II AMS56_RS02310 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS56_RS02320 PF02913 FAD linked oxidases, C-terminal domain AMS56_RS02320 PF01565 FAD binding domain AMS56_RS02330 PF13411 MerR HTH family regulatory protein AMS56_RS02335 PF00403 Heavy-metal-associated domain AMS56_RS02350 PF05552 Conserved TM helix AMS56_RS02370 PF13520 Amino acid permease AMS56_RS02375 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMS56_RS02380 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AMS56_RS02390 PF00171 Aldehyde dehydrogenase family AMS56_RS02395 PF12833 Helix-turn-helix domain AMS56_RS02405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS56_RS02405 PF00205 Thiamine pyrophosphate enzyme, central domain AMS56_RS02405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS56_RS02415 PF03313 Serine dehydratase alpha chain AMS56_RS02415 PF03315 Serine dehydratase beta chain AMS56_RS02425 PF02347 Glycine cleavage system P-protein AMS56_RS02430 PF01597 Glycine cleavage H-protein AMS56_RS02435 PF01571 Aminomethyltransferase folate-binding domain AMS56_RS02435 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMS56_RS02445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMS56_RS02445 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMS56_RS02460 PF00580 UvrD/REP helicase N-terminal domain AMS56_RS02460 PF13361 UvrD-like helicase C-terminal domain AMS56_RS02465 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMS56_RS02530 PF09588 YqaJ-like viral recombinase domain AMS56_RS02560 PF01381 Helix-turn-helix AMS56_RS02575 PF01555 DNA methylase AMS56_RS02610 PF01527 Transposase AMS56_RS02615 PF00665 Integrase core domain AMS56_RS02615 PF13276 HTH-like domain AMS56_RS02640 PF00589 Phage integrase family AMS56_RS02665 PF18416 N-acetylglucosamine binding protein domain 2 AMS56_RS02665 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMS56_RS02670 PF01565 FAD binding domain AMS56_RS02670 PF08031 Berberine and berberine like AMS56_RS02680 PF02203 Tar ligand binding domain homologue AMS56_RS02680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS02680 PF00672 HAMP domain AMS56_RS02685 PF00561 alpha/beta hydrolase fold AMS56_RS02695 PF03783 Curli production assembly/transport component CsgG AMS56_RS02705 PF05643 Putative bacterial lipoprotein (DUF799) AMS56_RS02710 PF04185 Phosphoesterase family AMS56_RS02735 PF00355 Rieske [2Fe-2S] domain AMS56_RS02735 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMS56_RS02750 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMS56_RS02750 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMS56_RS02760 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMS56_RS02760 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMS56_RS02765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMS56_RS02785 PF00669 Bacterial flagellin N-terminal helical region AMS56_RS02785 PF00700 Bacterial flagellin C-terminal helical region AMS56_RS02790 PF01165 Ribosomal protein S21 AMS56_RS02795 PF13673 Acetyltransferase (GNAT) domain AMS56_RS02795 PF00117 Glutamine amidotransferase class-I AMS56_RS02795 PF00958 GMP synthase C terminal domain AMS56_RS02795 PF03352 Methyladenine glycosylase AMS56_RS02795 PF13302 Acetyltransferase (GNAT) domain AMS56_RS02810 PF00230 Major intrinsic protein AMS56_RS02820 PF13439 Glycosyltransferase Family 4 AMS56_RS02825 PF05247 Flagellar transcriptional activator (FlhD) AMS56_RS02830 PF05280 Flagellar transcriptional activator (FlhC) AMS56_RS02835 PF01618 MotA/TolQ/ExbB proton channel family AMS56_RS02840 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMS56_RS02840 PF00691 OmpA family AMS56_RS02845 PF01339 CheB methylesterase AMS56_RS02845 PF00072 Response regulator receiver domain AMS56_RS02850 PF09078 CheY binding AMS56_RS02850 PF02895 Signal transducing histidine kinase, homodimeric domain AMS56_RS02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS02850 PF01627 Hpt domain AMS56_RS02850 PF01584 CheW-like domain AMS56_RS02855 PF01584 CheW-like domain AMS56_RS02860 PF00672 HAMP domain AMS56_RS02860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS02860 PF02203 Tar ligand binding domain homologue AMS56_RS02865 PF03705 CheR methyltransferase, all-alpha domain AMS56_RS02865 PF01739 CheR methyltransferase, SAM binding domain AMS56_RS02870 PF03975 CheD chemotactic sensory transduction AMS56_RS02875 PF01339 CheB methylesterase AMS56_RS02875 PF00072 Response regulator receiver domain AMS56_RS02880 PF00072 Response regulator receiver domain AMS56_RS02885 PF04344 Chemotaxis phosphatase, CheZ AMS56_RS02905 PF01312 FlhB HrpN YscU SpaS Family AMS56_RS02910 PF00771 FHIPEP family AMS56_RS02915 PF00448 SRP54-type protein, GTPase domain AMS56_RS02915 PF00448 SRP54-type protein, GTPase domain AMS56_RS02925 PF04542 Sigma-70 region 2 AMS56_RS02925 PF04539 Sigma-70 region 3 AMS56_RS02925 PF04545 Sigma-70, region 4 AMS56_RS02930 PF05221 S-adenosyl-L-homocysteine hydrolase AMS56_RS02930 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMS56_RS02935 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AMS56_RS02940 PF02219 Methylenetetrahydrofolate reductase AMS56_RS02945 PF01425 Amidase AMS56_RS02950 PF01738 Dienelactone hydrolase family AMS56_RS02955 PF03060 Nitronate monooxygenase AMS56_RS02960 PF13458 Periplasmic binding protein AMS56_RS02965 PF07690 Major Facilitator Superfamily AMS56_RS02980 PF16916 Dimerisation domain of Zinc Transporter AMS56_RS02980 PF01545 Cation efflux family AMS56_RS02985 PF01037 Lrp/AsnC ligand binding domain AMS56_RS02995 PF00753 Metallo-beta-lactamase superfamily AMS56_RS03000 PF03330 Lytic transglycolase AMS56_RS03000 PF05036 Sporulation related domain AMS56_RS03005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS56_RS03010 PF02021 Uncharacterised protein family UPF0102 AMS56_RS03015 PF13580 SIS domain AMS56_RS03020 PF04972 BON domain AMS56_RS03025 PF00034 Cytochrome c AMS56_RS03035 PF00324 Amino acid permease AMS56_RS03065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMS56_RS03065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMS56_RS03070 PF01810 LysE type translocator AMS56_RS03075 PF07690 Major Facilitator Superfamily AMS56_RS03080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS03080 PF03466 LysR substrate binding domain AMS56_RS03085 PF13542 Helix-turn-helix domain of transposase family ISL3 AMS56_RS03085 PF01610 Transposase AMS56_RS03085 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AMS56_RS03090 PF03922 OmpW family AMS56_RS03105 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMS56_RS03110 PF03358 NADPH-dependent FMN reductase AMS56_RS03115 PF01161 Phosphatidylethanolamine-binding protein AMS56_RS03120 PF00156 Phosphoribosyl transferase domain AMS56_RS03125 PF00390 Malic enzyme, N-terminal domain AMS56_RS03125 PF01515 Phosphate acetyl/butaryl transferase AMS56_RS03125 PF03949 Malic enzyme, NAD binding domain AMS56_RS03140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMS56_RS03145 PF13404 AsnC-type helix-turn-helix domain AMS56_RS03145 PF01037 Lrp/AsnC ligand binding domain AMS56_RS03155 PF00440 Bacterial regulatory proteins, tetR family AMS56_RS03155 PF17932 Tetracyclin repressor-like, C-terminal domain AMS56_RS03165 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS56_RS03165 PF00175 Oxidoreductase NAD-binding domain AMS56_RS03165 PF00970 Oxidoreductase FAD-binding domain AMS56_RS03170 PF01883 Iron-sulfur cluster assembly protein AMS56_RS03175 PF05138 Phenylacetic acid catabolic protein AMS56_RS03180 PF06243 Phenylacetic acid degradation B AMS56_RS03185 PF05138 Phenylacetic acid catabolic protein AMS56_RS03235 PF03143 Elongation factor Tu C-terminal domain AMS56_RS03235 PF00009 Elongation factor Tu GTP binding domain AMS56_RS03235 PF03144 Elongation factor Tu domain 2 AMS56_RS03245 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMS56_RS03250 PF00467 KOW motif AMS56_RS03250 PF02357 Transcription termination factor nusG AMS56_RS03255 PF00298 Ribosomal protein L11, RNA binding domain AMS56_RS03255 PF03946 Ribosomal protein L11, N-terminal domain AMS56_RS03260 PF00687 Ribosomal protein L1p/L10e family AMS56_RS03265 PF00466 Ribosomal protein L10 AMS56_RS03270 PF00542 Ribosomal protein L7/L12 C-terminal domain AMS56_RS03270 PF16320 Ribosomal protein L7/L12 dimerisation domain AMS56_RS03275 PF04565 RNA polymerase Rpb2, domain 3 AMS56_RS03275 PF04560 RNA polymerase Rpb2, domain 7 AMS56_RS03275 PF00562 RNA polymerase Rpb2, domain 6 AMS56_RS03275 PF10385 RNA polymerase beta subunit external 1 domain AMS56_RS03275 PF04561 RNA polymerase Rpb2, domain 2 AMS56_RS03275 PF04563 RNA polymerase beta subunit AMS56_RS03280 PF04997 RNA polymerase Rpb1, domain 1 AMS56_RS03280 PF00623 RNA polymerase Rpb1, domain 2 AMS56_RS03280 PF04983 RNA polymerase Rpb1, domain 3 AMS56_RS03280 PF05000 RNA polymerase Rpb1, domain 4 AMS56_RS03280 PF04998 RNA polymerase Rpb1, domain 5 AMS56_RS03285 PF00271 Helicase conserved C-terminal domain AMS56_RS03285 PF09382 RQC domain AMS56_RS03285 PF16124 RecQ zinc-binding AMS56_RS03285 PF00270 DEAD/DEAH box helicase AMS56_RS03285 PF00570 HRDC domain AMS56_RS03290 PF00164 Ribosomal protein S12/S23 AMS56_RS03295 PF00177 Ribosomal protein S7p/S5e AMS56_RS03300 PF14492 Elongation Factor G, domain II AMS56_RS03300 PF03764 Elongation factor G, domain IV AMS56_RS03300 PF00009 Elongation factor Tu GTP binding domain AMS56_RS03300 PF03144 Elongation factor Tu domain 2 AMS56_RS03300 PF00679 Elongation factor G C-terminus AMS56_RS03305 PF00009 Elongation factor Tu GTP binding domain AMS56_RS03305 PF03143 Elongation factor Tu C-terminal domain AMS56_RS03305 PF03144 Elongation factor Tu domain 2 AMS56_RS03310 PF00338 Ribosomal protein S10p/S20e AMS56_RS03315 PF00297 Ribosomal protein L3 AMS56_RS03320 PF00573 Ribosomal protein L4/L1 family AMS56_RS03325 PF00276 Ribosomal protein L23 AMS56_RS03330 PF03947 Ribosomal Proteins L2, C-terminal domain AMS56_RS03330 PF00181 Ribosomal Proteins L2, RNA binding domain AMS56_RS03335 PF00203 Ribosomal protein S19 AMS56_RS03340 PF00237 Ribosomal protein L22p/L17e AMS56_RS03345 PF00189 Ribosomal protein S3, C-terminal domain AMS56_RS03345 PF07650 KH domain AMS56_RS03350 PF00252 Ribosomal protein L16p/L10e AMS56_RS03355 PF00831 Ribosomal L29 protein AMS56_RS03360 PF00366 Ribosomal protein S17 AMS56_RS03365 PF00238 Ribosomal protein L14p/L23e AMS56_RS03370 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMS56_RS03375 PF00673 ribosomal L5P family C-terminus AMS56_RS03375 PF00281 Ribosomal protein L5 AMS56_RS03380 PF00253 Ribosomal protein S14p/S29e AMS56_RS03385 PF00410 Ribosomal protein S8 AMS56_RS03390 PF00347 Ribosomal protein L6 AMS56_RS03395 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMS56_RS03400 PF00333 Ribosomal protein S5, N-terminal domain AMS56_RS03400 PF03719 Ribosomal protein S5, C-terminal domain AMS56_RS03405 PF00327 Ribosomal protein L30p/L7e AMS56_RS03410 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMS56_RS03415 PF00344 SecY translocase AMS56_RS03420 PF01176 Translation initiation factor 1A / IF-1 AMS56_RS03425 PF00444 Ribosomal protein L36 AMS56_RS03430 PF00416 Ribosomal protein S13/S18 AMS56_RS03435 PF00411 Ribosomal protein S11 AMS56_RS03440 PF00163 Ribosomal protein S4/S9 N-terminal domain AMS56_RS03440 PF01479 S4 domain AMS56_RS03445 PF01000 RNA polymerase Rpb3/RpoA insert domain AMS56_RS03445 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMS56_RS03445 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMS56_RS03450 PF01196 Ribosomal protein L17 AMS56_RS03460 PF02683 Cytochrome C biogenesis protein transmembrane region AMS56_RS03460 PF11412 Disulphide bond corrector protein DsbC AMS56_RS03465 PF00490 Delta-aminolevulinic acid dehydratase AMS56_RS03470 PF01926 50S ribosome-binding GTPase AMS56_RS03475 PF00034 Cytochrome c AMS56_RS03480 PF05140 ResB-like family AMS56_RS03485 PF01578 Cytochrome C assembly protein AMS56_RS03490 PF00174 Oxidoreductase molybdopterin binding domain AMS56_RS03495 PF01794 Ferric reductase like transmembrane component AMS56_RS03500 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMS56_RS03500 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMS56_RS03510 PF01491 Frataxin-like domain AMS56_RS03515 PF00905 Penicillin binding protein transpeptidase domain AMS56_RS03515 PF00912 Transglycosylase AMS56_RS03515 PF17092 Penicillin-binding protein OB-like domain AMS56_RS03535 PF07660 Secretin and TonB N terminus short domain AMS56_RS03535 PF03958 Bacterial type II/III secretion system short domain AMS56_RS03535 PF00263 Bacterial type II and III secretion system protein AMS56_RS03535 PF11741 AMIN domain AMS56_RS03540 PF01202 Shikimate kinase AMS56_RS03545 PF01761 3-dehydroquinate synthase AMS56_RS03550 PF01966 HD domain AMS56_RS03550 PF13286 Phosphohydrolase-associated domain AMS56_RS03555 PF13416 Bacterial extracellular solute-binding protein AMS56_RS03560 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS03565 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS03570 PF00005 ABC transporter AMS56_RS03570 PF17912 MalK OB fold domain AMS56_RS03575 PF03009 Glycerophosphoryl diester phosphodiesterase family AMS56_RS03590 PF01645 Conserved region in glutamate synthase AMS56_RS03590 PF01493 GXGXG motif AMS56_RS03590 PF04898 Glutamate synthase central domain AMS56_RS03590 PF00310 Glutamine amidotransferases class-II AMS56_RS03595 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMS56_RS03595 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS56_RS03600 PF01235 Sodium:alanine symporter family AMS56_RS03610 PF00005 ABC transporter AMS56_RS03610 PF06472 ABC transporter transmembrane region 2 AMS56_RS03615 PF01266 FAD dependent oxidoreductase AMS56_RS03625 PF05690 Thiazole biosynthesis protein ThiG AMS56_RS03630 PF02581 Thiamine monophosphate synthase AMS56_RS03635 PF00005 ABC transporter AMS56_RS03640 PF02405 Permease MlaE AMS56_RS03645 PF02470 MlaD protein AMS56_RS03665 PF00005 ABC transporter AMS56_RS03670 PF01061 ABC-2 type transporter AMS56_RS03675 PF01722 BolA-like protein AMS56_RS03680 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMS56_RS03685 PF01634 ATP phosphoribosyltransferase AMS56_RS03690 PF00815 Histidinol dehydrogenase AMS56_RS03695 PF00155 Aminotransferase class I and II AMS56_RS03700 PF00475 Imidazoleglycerol-phosphate dehydratase AMS56_RS03705 PF01914 MarC family integral membrane protein AMS56_RS03710 PF00117 Glutamine amidotransferase class-I AMS56_RS03715 PF00977 Histidine biosynthesis protein AMS56_RS03720 PF00977 Histidine biosynthesis protein AMS56_RS03725 PF01502 Phosphoribosyl-AMP cyclohydrolase AMS56_RS03730 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMS56_RS03745 PF02416 mttA/Hcf106 family AMS56_RS03750 PF02416 mttA/Hcf106 family AMS56_RS03755 PF00902 Sec-independent protein translocase protein (TatC) AMS56_RS03760 PF13180 PDZ domain AMS56_RS03760 PF17820 PDZ domain AMS56_RS03765 PF01784 NIF3 (NGG1p interacting factor 3) AMS56_RS03770 PF00355 Rieske [2Fe-2S] domain AMS56_RS03770 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMS56_RS03775 PF00032 Cytochrome b(C-terminal)/b6/petD AMS56_RS03775 PF00033 Cytochrome b/b6/petB AMS56_RS03780 PF02167 Cytochrome C1 family AMS56_RS03785 PF02798 Glutathione S-transferase, N-terminal domain AMS56_RS03785 PF00043 Glutathione S-transferase, C-terminal domain AMS56_RS03790 PF04386 Stringent starvation protein B AMS56_RS03820 PF02384 N-6 DNA Methylase AMS56_RS03825 PF11867 Domain of unknown function (DUF3387) AMS56_RS03825 PF18766 SWI2/SNF2 ATPase AMS56_RS03825 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMS56_RS03840 PF05973 Phage derived protein Gp49-like (DUF891) AMS56_RS03870 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AMS56_RS03885 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMS56_RS03890 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMS56_RS03905 PF05947 Type VI secretion system, TssF AMS56_RS03915 PF10431 C-terminal, D2-small domain, of ClpB protein AMS56_RS03915 PF00004 ATPase family associated with various cellular activities (AAA) AMS56_RS03915 PF17871 AAA lid domain AMS56_RS03915 PF07724 AAA domain (Cdc48 subfamily) AMS56_RS03925 PF00691 OmpA family AMS56_RS03935 PF14331 ImcF-related N-terminal domain AMS56_RS03935 PF06744 Type VI secretion protein IcmF C-terminal AMS56_RS03935 PF06761 Intracellular multiplication and human macrophage-killing AMS56_RS03960 PF00005 ABC transporter AMS56_RS03960 PF03412 Peptidase C39 family AMS56_RS03960 PF00664 ABC transporter transmembrane region AMS56_RS03965 PF00529 HlyD membrane-fusion protein of T1SS AMS56_RS03965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS03980 PF11838 ERAP1-like C-terminal domain AMS56_RS03980 PF01433 Peptidase family M1 domain AMS56_RS04030 PF01527 Transposase AMS56_RS04035 PF13276 HTH-like domain AMS56_RS04035 PF13683 Integrase core domain AMS56_RS04045 PF00313 'Cold-shock' DNA-binding domain AMS56_RS04050 PF13520 Amino acid permease AMS56_RS04055 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMS56_RS04060 PF02441 Flavoprotein AMS56_RS04065 PF00462 Glutaredoxin AMS56_RS04070 PF05175 Methyltransferase small domain AMS56_RS04070 PF17827 PrmC N-terminal domain AMS56_RS04075 PF03462 PCRF domain AMS56_RS04075 PF00472 RF-1 domain AMS56_RS04080 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMS56_RS04080 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMS56_RS04080 PF01488 Shikimate / quinate 5-dehydrogenase AMS56_RS04095 PF01321 Creatinase/Prolidase N-terminal domain AMS56_RS04095 PF00557 Metallopeptidase family M24 AMS56_RS04105 PF00857 Isochorismatase family AMS56_RS04115 PF12848 ABC transporter AMS56_RS04115 PF00005 ABC transporter AMS56_RS04130 PF03009 Glycerophosphoryl diester phosphodiesterase family AMS56_RS04140 PF00324 Amino acid permease AMS56_RS04150 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMS56_RS04155 PF06071 Protein of unknown function (DUF933) AMS56_RS04155 PF01926 50S ribosome-binding GTPase AMS56_RS04170 PF01494 FAD binding domain AMS56_RS04175 PF13098 Thioredoxin-like domain AMS56_RS04175 PF10411 Disulfide bond isomerase protein N-terminus AMS56_RS04185 PF02525 Flavodoxin-like fold AMS56_RS04190 PF03167 Uracil DNA glycosylase superfamily AMS56_RS04200 PF00218 Indole-3-glycerol phosphate synthase AMS56_RS04205 PF02885 Glycosyl transferase family, helical bundle domain AMS56_RS04205 PF00591 Glycosyl transferase family, a/b domain AMS56_RS04210 PF00117 Glutamine amidotransferase class-I AMS56_RS04215 PF00425 chorismate binding enzyme AMS56_RS04215 PF04715 Anthranilate synthase component I, N terminal region AMS56_RS04220 PF13419 Haloacid dehalogenase-like hydrolase AMS56_RS04225 PF00834 Ribulose-phosphate 3 epimerase family AMS56_RS04230 PF04379 ApaG domain AMS56_RS04235 PF06725 3D domain AMS56_RS04235 PF03562 MltA specific insert domain AMS56_RS04240 PF00501 AMP-binding enzyme AMS56_RS04240 PF14535 AMP-binding enzyme C-terminal domain AMS56_RS04245 PF03061 Thioesterase superfamily AMS56_RS04250 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS04255 PF02803 Thiolase, C-terminal domain AMS56_RS04255 PF00108 Thiolase, N-terminal domain AMS56_RS04265 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS04295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS56_RS04295 PF00384 Molybdopterin oxidoreductase AMS56_RS04295 PF01568 Molydopterin dinucleotide binding domain AMS56_RS04300 PF00501 AMP-binding enzyme AMS56_RS04300 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS04305 PF13609 Gram-negative porin AMS56_RS04310 PF03232 Ubiquinone biosynthesis protein COQ7 AMS56_RS04315 PF02381 MraZ protein, putative antitoxin-like AMS56_RS04320 PF01795 MraW methylase family AMS56_RS04325 PF04999 Cell division protein FtsL AMS56_RS04330 PF03717 Penicillin-binding Protein dimerisation domain AMS56_RS04330 PF00905 Penicillin binding protein transpeptidase domain AMS56_RS04335 PF02875 Mur ligase family, glutamate ligase domain AMS56_RS04335 PF08245 Mur ligase middle domain AMS56_RS04340 PF08245 Mur ligase middle domain AMS56_RS04340 PF02875 Mur ligase family, glutamate ligase domain AMS56_RS04340 PF01225 Mur ligase family, catalytic domain AMS56_RS04345 PF00953 Glycosyl transferase family 4 AMS56_RS04345 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMS56_RS04350 PF08245 Mur ligase middle domain AMS56_RS04350 PF02875 Mur ligase family, glutamate ligase domain AMS56_RS04355 PF01098 Cell cycle protein AMS56_RS04360 PF03033 Glycosyltransferase family 28 N-terminal domain AMS56_RS04360 PF04101 Glycosyltransferase family 28 C-terminal domain AMS56_RS04365 PF08245 Mur ligase middle domain AMS56_RS04365 PF01225 Mur ligase family, catalytic domain AMS56_RS04365 PF02875 Mur ligase family, glutamate ligase domain AMS56_RS04370 PF01820 D-ala D-ala ligase N-terminus AMS56_RS04370 PF07478 D-ala D-ala ligase C-terminus AMS56_RS04375 PF03799 Cell division protein FtsQ AMS56_RS04375 PF08478 POTRA domain, FtsQ-type AMS56_RS04380 PF02491 SHS2 domain inserted in FTSA AMS56_RS04385 PF12327 FtsZ family, C-terminal domain AMS56_RS04385 PF00091 Tubulin/FtsZ family, GTPase domain AMS56_RS04390 PF08534 Redoxin AMS56_RS04395 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMS56_RS04405 PF02810 SEC-C motif AMS56_RS04405 PF07516 SecA Wing and Scaffold domain AMS56_RS04405 PF07517 SecA DEAD-like domain AMS56_RS04405 PF01043 SecA preprotein cross-linking domain AMS56_RS04410 PF01960 ArgJ family AMS56_RS04420 PF00293 NUDIX domain AMS56_RS04425 PF03884 DNA gyrase inhibitor YacG AMS56_RS04430 PF07072 Cell division protein AMS56_RS04435 PF01121 Dephospho-CoA kinase AMS56_RS04440 PF06750 Bacterial Peptidase A24 N-terminal domain AMS56_RS04440 PF01478 Type IV leader peptidase family AMS56_RS04445 PF00482 Type II secretion system (T2SS), protein F AMS56_RS04450 PF00437 Type II/IV secretion system protein AMS56_RS04450 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMS56_RS04455 PF01595 Cyclin M transmembrane N-terminal domain AMS56_RS04455 PF03471 Transporter associated domain AMS56_RS04455 PF00571 CBS domain AMS56_RS04465 PF00348 Polyprenyl synthetase AMS56_RS04470 PF00829 Ribosomal prokaryotic L21 protein AMS56_RS04475 PF01016 Ribosomal L27 protein AMS56_RS04480 PF01926 50S ribosome-binding GTPase AMS56_RS04480 PF01018 GTP1/OBG AMS56_RS04485 PF00696 Amino acid kinase family AMS56_RS04485 PF01472 PUA domain AMS56_RS04495 PF00293 NUDIX domain AMS56_RS04500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMS56_RS04500 PF03129 Anticodon binding domain AMS56_RS04500 PF04073 Aminoacyl-tRNA editing domain AMS56_RS04505 PF01914 MarC family integral membrane protein AMS56_RS04510 PF00156 Phosphoribosyl transferase domain AMS56_RS04515 PF00448 SRP54-type protein, GTPase domain AMS56_RS04515 PF02881 SRP54-type protein, helical bundle domain AMS56_RS04515 PF02978 Signal peptide binding domain AMS56_RS04520 PF01578 Cytochrome C assembly protein AMS56_RS04530 PF01510 N-acetylmuramoyl-L-alanine amidase AMS56_RS04535 PF03477 ATP cone domain AMS56_RS04535 PF02867 Ribonucleotide reductase, barrel domain AMS56_RS04535 PF00317 Ribonucleotide reductase, all-alpha domain AMS56_RS04540 PF00268 Ribonucleotide reductase, small chain AMS56_RS04555 PF00294 pfkB family carbohydrate kinase AMS56_RS04560 PF08534 Redoxin AMS56_RS04575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMS56_RS04575 PF00289 Biotin carboxylase, N-terminal domain AMS56_RS04575 PF02785 Biotin carboxylase C-terminal domain AMS56_RS04580 PF00364 Biotin-requiring enzyme AMS56_RS04585 PF01220 Dehydroquinase class II AMS56_RS04590 PF00578 AhpC/TSA family AMS56_RS04600 PF08245 Mur ligase middle domain AMS56_RS04600 PF01225 Mur ligase family, catalytic domain AMS56_RS04600 PF02875 Mur ligase family, glutamate ligase domain AMS56_RS04605 PF05728 Uncharacterised protein family (UPF0227) AMS56_RS04610 PF00773 RNB domain AMS56_RS04615 PF01488 Shikimate / quinate 5-dehydrogenase AMS56_RS04615 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMS56_RS04615 PF08501 Shikimate dehydrogenase substrate binding domain AMS56_RS04620 PF00912 Transglycosylase AMS56_RS04635 PF09339 IclR helix-turn-helix domain AMS56_RS04635 PF01614 Bacterial transcriptional regulator AMS56_RS04640 PF05035 2-keto-3-deoxy-galactonokinase AMS56_RS04655 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMS56_RS04660 PF00005 ABC transporter AMS56_RS04665 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS04680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMS56_RS04685 PF02464 Competence-damaged protein AMS56_RS04690 PF04608 Phosphatidylglycerophosphatase A AMS56_RS04695 PF00586 AIR synthase related protein, N-terminal domain AMS56_RS04695 PF02769 AIR synthase related protein, C-terminal domain AMS56_RS04700 PF00390 Malic enzyme, N-terminal domain AMS56_RS04700 PF03949 Malic enzyme, NAD binding domain AMS56_RS04700 PF01515 Phosphate acetyl/butaryl transferase AMS56_RS04720 PF04452 RNA methyltransferase AMS56_RS04730 PF17284 Spermidine synthase tetramerisation domain AMS56_RS04735 PF00456 Transketolase, thiamine diphosphate binding domain AMS56_RS04735 PF02780 Transketolase, C-terminal domain AMS56_RS04735 PF02779 Transketolase, pyrimidine binding domain AMS56_RS04740 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMS56_RS04740 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMS56_RS04745 PF07690 Major Facilitator Superfamily AMS56_RS04750 PF02560 Cyanate lyase C-terminal domain AMS56_RS04755 PF00484 Carbonic anhydrase AMS56_RS04760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS04760 PF03466 LysR substrate binding domain AMS56_RS04765 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS04765 PF07729 FCD domain AMS56_RS04770 PF00375 Sodium:dicarboxylate symporter family AMS56_RS04775 PF03561 Allantoicase repeat AMS56_RS04780 PF04115 Ureidoglycolate lyase AMS56_RS04785 PF01475 Ferric uptake regulator family AMS56_RS04790 PF04355 SmpA / OmlA family AMS56_RS04795 PF05173 Dihydrodipicolinate reductase, C-terminus AMS56_RS04795 PF01113 Dihydrodipicolinate reductase, N-terminus AMS56_RS04800 PF01618 MotA/TolQ/ExbB proton channel family AMS56_RS04805 PF02472 Biopolymer transport protein ExbD/TolR AMS56_RS04810 PF13603 Leucyl-tRNA synthetase, Domain 2 AMS56_RS04810 PF00133 tRNA synthetases class I (I, L, M and V) AMS56_RS04810 PF08264 Anticodon-binding domain of tRNA AMS56_RS04810 PF09334 tRNA synthetases class I (M) AMS56_RS04820 PF06144 DNA polymerase III, delta subunit AMS56_RS04820 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AMS56_RS04825 PF00171 Aldehyde dehydrogenase family AMS56_RS04830 PF03653 Uncharacterised protein family (UPF0093) AMS56_RS04835 PF01380 SIS domain AMS56_RS04835 PF01418 Helix-turn-helix domain, rpiR family AMS56_RS04835 PF02685 Glucokinase AMS56_RS04840 PF00920 Dehydratase family AMS56_RS04845 PF01081 KDPG and KHG aldolase AMS56_RS04850 PF02447 GntP family permease AMS56_RS04860 PF08328 Adenylosuccinate lyase C-terminal AMS56_RS04860 PF00206 Lyase AMS56_RS04865 PF07690 Major Facilitator Superfamily AMS56_RS04870 PF03466 LysR substrate binding domain AMS56_RS04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS04875 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMS56_RS04875 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMS56_RS04880 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS56_RS04885 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS04890 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS04895 PF00005 ABC transporter AMS56_RS04905 PF00166 Chaperonin 10 Kd subunit AMS56_RS04910 PF00011 Hsp20/alpha crystallin family AMS56_RS04915 PF00011 Hsp20/alpha crystallin family AMS56_RS04925 PF13230 Glutamine amidotransferases class-II AMS56_RS04930 PF01979 Amidohydrolase family AMS56_RS04945 PF00572 Ribosomal protein L13 AMS56_RS04950 PF00380 Ribosomal protein S9/S16 AMS56_RS04955 PF01521 Iron-sulphur cluster biosynthesis AMS56_RS04960 PF12833 Helix-turn-helix domain AMS56_RS04960 PF02311 AraC-like ligand binding domain AMS56_RS04965 PF02798 Glutathione S-transferase, N-terminal domain AMS56_RS04970 PF02798 Glutathione S-transferase, N-terminal domain AMS56_RS04970 PF00043 Glutathione S-transferase, C-terminal domain AMS56_RS04975 PF03702 Anhydro-N-acetylmuramic acid kinase AMS56_RS04980 PF00579 tRNA synthetases class I (W and Y) AMS56_RS04980 PF01479 S4 domain AMS56_RS04985 PF02580 D-Tyr-tRNA(Tyr) deacylase AMS56_RS04990 PF00300 Histidine phosphatase superfamily (branch 1) AMS56_RS05005 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMS56_RS05005 PF05491 RuvB C-terminal winged helix domain AMS56_RS05005 PF17864 RuvB AAA lid domain AMS56_RS05010 PF01330 RuvA N terminal domain AMS56_RS05010 PF07499 RuvA, C-terminal domain AMS56_RS05015 PF02075 Crossover junction endodeoxyribonuclease RuvC AMS56_RS05025 PF02142 MGS-like domain AMS56_RS05025 PF01808 AICARFT/IMPCHase bienzyme AMS56_RS05030 PF02954 Bacterial regulatory protein, Fis family AMS56_RS05035 PF01207 Dihydrouridine synthase (Dus) AMS56_RS05040 PF01494 FAD binding domain AMS56_RS05045 PF05195 Aminopeptidase P, N-terminal domain AMS56_RS05045 PF00557 Metallopeptidase family M24 AMS56_RS05050 PF13417 Glutathione S-transferase, N-terminal domain AMS56_RS05050 PF00043 Glutathione S-transferase, C-terminal domain AMS56_RS05060 PF01645 Conserved region in glutamate synthase AMS56_RS05070 PF00293 NUDIX domain AMS56_RS05075 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMS56_RS05075 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMS56_RS05080 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMS56_RS05085 PF02233 NAD(P) transhydrogenase beta subunit AMS56_RS05115 PF01170 Putative RNA methylase family UPF0020 AMS56_RS05115 PF02926 THUMP domain AMS56_RS05130 PF02470 MlaD protein AMS56_RS05135 PF04403 Paraquat-inducible protein A AMS56_RS05150 PF04264 YceI-like domain AMS56_RS05155 PF04264 YceI-like domain AMS56_RS05160 PF07690 Major Facilitator Superfamily AMS56_RS05165 PF07549 SecD/SecF GG Motif AMS56_RS05165 PF02355 Protein export membrane protein AMS56_RS05170 PF02355 Protein export membrane protein AMS56_RS05170 PF13721 SecD export protein N-terminal TM region AMS56_RS05170 PF07549 SecD/SecF GG Motif AMS56_RS05175 PF02699 Preprotein translocase subunit AMS56_RS05180 PF01702 Queuine tRNA-ribosyltransferase AMS56_RS05185 PF02547 Queuosine biosynthesis protein AMS56_RS05190 PF00271 Helicase conserved C-terminal domain AMS56_RS05190 PF00270 DEAD/DEAH box helicase AMS56_RS05190 PF17191 RecG wedge domain AMS56_RS05195 PF03466 LysR substrate binding domain AMS56_RS05195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS05200 PF00141 Peroxidase AMS56_RS05210 PF00210 Ferritin-like domain AMS56_RS05215 PF01638 HxlR-like helix-turn-helix AMS56_RS05220 PF01040 UbiA prenyltransferase family AMS56_RS05230 PF06299 Protein of unknown function (DUF1045) AMS56_RS05235 PF07702 UTRA domain AMS56_RS05235 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS05240 PF06754 Phosphonate metabolism protein PhnG AMS56_RS05250 PF05861 Bacterial phosphonate metabolism protein (PhnI) AMS56_RS05255 PF06007 Phosphonate metabolism protein PhnJ AMS56_RS05260 PF00005 ABC transporter AMS56_RS05265 PF00005 ABC transporter AMS56_RS05270 PF07969 Amidohydrolase family AMS56_RS05275 PF00005 ABC transporter AMS56_RS05285 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS05290 PF03807 NADP oxidoreductase coenzyme F420-dependent AMS56_RS05290 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMS56_RS05295 PF01168 Alanine racemase, N-terminal domain AMS56_RS05300 PF02754 Cysteine-rich domain AMS56_RS05300 PF13183 4Fe-4S dicluster domain AMS56_RS05305 PF01565 FAD binding domain AMS56_RS05310 PF01565 FAD binding domain AMS56_RS05310 PF02913 FAD linked oxidases, C-terminal domain AMS56_RS05315 PF02913 FAD linked oxidases, C-terminal domain AMS56_RS05315 PF01565 FAD binding domain AMS56_RS05320 PF01923 Cobalamin adenosyltransferase AMS56_RS05325 PF00042 Globin AMS56_RS05325 PF00970 Oxidoreductase FAD-binding domain AMS56_RS05325 PF00175 Oxidoreductase NAD-binding domain AMS56_RS05330 PF00793 DAHP synthetase I family AMS56_RS05335 PF01523 Putative modulator of DNA gyrase AMS56_RS05340 PF00795 Carbon-nitrogen hydrolase AMS56_RS05345 PF13502 AsmA-like C-terminal region AMS56_RS05345 PF13116 Protein of unknown function AMS56_RS05350 PF03710 Glutamate-ammonia ligase adenylyltransferase AMS56_RS05350 PF08335 GlnD PII-uridylyltransferase AMS56_RS05355 PF02463 RecF/RecN/SMC N terminal domain AMS56_RS05360 PF01513 ATP-NAD kinase AMS56_RS05365 PF01628 HrcA protein C terminal domain AMS56_RS05365 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMS56_RS05370 PF00762 Ferrochelatase AMS56_RS05375 PF01479 S4 domain AMS56_RS05380 PF01025 GrpE AMS56_RS05390 PF00012 Hsp70 protein AMS56_RS05395 PF00226 DnaJ domain AMS56_RS05395 PF00684 DnaJ central domain AMS56_RS05395 PF01556 DnaJ C terminal domain AMS56_RS05400 PF00425 chorismate binding enzyme AMS56_RS05400 PF04715 Anthranilate synthase component I, N terminal region AMS56_RS05405 PF02548 Ketopantoate hydroxymethyltransferase AMS56_RS05410 PF01712 Deoxynucleoside kinase AMS56_RS05415 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMS56_RS05420 PF01743 Poly A polymerase head domain AMS56_RS05420 PF12626 Polymerase A arginine-rich C-terminus AMS56_RS05420 PF12627 Probable RNA and SrmB- binding site of polymerase A AMS56_RS05430 PF00308 Bacterial dnaA protein AMS56_RS05435 PF00586 AIR synthase related protein, N-terminal domain AMS56_RS05435 PF02769 AIR synthase related protein, C-terminal domain AMS56_RS05450 PF01119 DNA mismatch repair protein, C-terminal domain AMS56_RS05450 PF08676 MutL C terminal dimerisation domain AMS56_RS05455 PF09335 SNARE associated Golgi protein AMS56_RS05465 PF00924 Mechanosensitive ion channel AMS56_RS05465 PF05552 Conserved TM helix AMS56_RS05475 PF00483 Nucleotidyl transferase AMS56_RS05475 PF01050 Mannose-6-phosphate isomerase AMS56_RS05480 PF05159 Capsule polysaccharide biosynthesis protein AMS56_RS05490 PF02563 Polysaccharide biosynthesis/export protein AMS56_RS05500 PF01061 ABC-2 type transporter AMS56_RS05505 PF00005 ABC transporter AMS56_RS05540 PF16363 GDP-mannose 4,6 dehydratase AMS56_RS05545 PF08544 GHMP kinases C terminal AMS56_RS05545 PF00288 GHMP kinases N terminal domain AMS56_RS05550 PF13580 SIS domain AMS56_RS05555 PF00483 Nucleotidyl transferase AMS56_RS05565 PF05159 Capsule polysaccharide biosynthesis protein AMS56_RS05575 PF00884 Sulfatase AMS56_RS05580 PF00698 Acyl transferase domain AMS56_RS05580 PF08240 Alcohol dehydrogenase GroES-like domain AMS56_RS05580 PF08659 KR domain AMS56_RS05580 PF00109 Beta-ketoacyl synthase, N-terminal domain AMS56_RS05580 PF16197 Ketoacyl-synthetase C-terminal extension AMS56_RS05580 PF00550 Phosphopantetheine attachment site AMS56_RS05580 PF14765 Polyketide synthase dehydratase AMS56_RS05580 PF02801 Beta-ketoacyl synthase, C-terminal domain AMS56_RS05585 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMS56_RS05590 PF00155 Aminotransferase class I and II AMS56_RS05615 PF02311 AraC-like ligand binding domain AMS56_RS05615 PF12833 Helix-turn-helix domain AMS56_RS05620 PF02397 Bacterial sugar transferase AMS56_RS05625 PF10531 SLBB domain AMS56_RS05625 PF02563 Polysaccharide biosynthesis/export protein AMS56_RS05630 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMS56_RS05635 PF02706 Chain length determinant protein AMS56_RS05635 PF13614 AAA domain AMS56_RS05635 PF13807 G-rich domain on putative tyrosine kinase AMS56_RS05645 PF05159 Capsule polysaccharide biosynthesis protein AMS56_RS05650 PF00132 Bacterial transferase hexapeptide (six repeats) AMS56_RS05660 PF13439 Glycosyltransferase Family 4 AMS56_RS05660 PF00534 Glycosyl transferases group 1 AMS56_RS05665 PF00793 DAHP synthetase I family AMS56_RS05675 PF00571 CBS domain AMS56_RS05675 PF01380 SIS domain AMS56_RS05680 PF00483 Nucleotidyl transferase AMS56_RS05705 PF00691 OmpA family AMS56_RS05710 PF07676 WD40-like Beta Propeller Repeat AMS56_RS05710 PF04052 TolB amino-terminal domain AMS56_RS05720 PF02472 Biopolymer transport protein ExbD/TolR AMS56_RS05725 PF01618 MotA/TolQ/ExbB proton channel family AMS56_RS05730 PF03061 Thioesterase superfamily AMS56_RS05735 PF00106 short chain dehydrogenase AMS56_RS05740 PF00464 Serine hydroxymethyltransferase AMS56_RS05745 PF03477 ATP cone domain AMS56_RS05790 PF00578 AhpC/TSA family AMS56_RS05790 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMS56_RS05800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS05800 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS05800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS05825 PF01494 FAD binding domain AMS56_RS05835 PF07690 Major Facilitator Superfamily AMS56_RS05840 PF04209 homogentisate 1,2-dioxygenase AMS56_RS05860 PF07690 Major Facilitator Superfamily AMS56_RS05865 PF00881 Nitroreductase family AMS56_RS05870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS56_RS05870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS56_RS05875 PF03466 LysR substrate binding domain AMS56_RS05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS05880 PF00266 Aminotransferase class-V AMS56_RS05890 PF00892 EamA-like transporter family AMS56_RS05895 PF07690 Major Facilitator Superfamily AMS56_RS05900 PF01799 [2Fe-2S] binding domain AMS56_RS05900 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS56_RS05905 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMS56_RS05905 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMS56_RS05920 PF07715 TonB-dependent Receptor Plug Domain AMS56_RS05920 PF00593 TonB dependent receptor AMS56_RS05925 PF00005 ABC transporter AMS56_RS05935 PF01032 FecCD transport family AMS56_RS05940 PF03466 LysR substrate binding domain AMS56_RS05940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS05960 PF10605 3HB-oligomer hydrolase (3HBOH) AMS56_RS05970 PF01925 Sulfite exporter TauE/SafE AMS56_RS05975 PF07690 Major Facilitator Superfamily AMS56_RS05980 PF03009 Glycerophosphoryl diester phosphodiesterase family AMS56_RS05985 PF01810 LysE type translocator AMS56_RS06035 PF08240 Alcohol dehydrogenase GroES-like domain AMS56_RS06035 PF00107 Zinc-binding dehydrogenase AMS56_RS06040 PF01638 HxlR-like helix-turn-helix AMS56_RS06050 PF00166 Chaperonin 10 Kd subunit AMS56_RS06055 PF00118 TCP-1/cpn60 chaperonin family AMS56_RS06065 PF00301 Rubredoxin AMS56_RS06075 PF02622 Uncharacterized ACR, COG1678 AMS56_RS06080 PF03652 Holliday junction resolvase AMS56_RS06085 PF00156 Phosphoribosyl transferase domain AMS56_RS06090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMS56_RS06090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMS56_RS06095 PF01979 Amidohydrolase family AMS56_RS06105 PF00149 Calcineurin-like phosphoesterase AMS56_RS06110 PF16363 GDP-mannose 4,6 dehydratase AMS56_RS06115 PF00483 Nucleotidyl transferase AMS56_RS06120 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMS56_RS06125 PF04321 RmlD substrate binding domain AMS56_RS06135 PF00005 ABC transporter AMS56_RS06145 PF01370 NAD dependent epimerase/dehydratase family AMS56_RS06160 PF00535 Glycosyl transferase family 2 AMS56_RS06170 PF01370 NAD dependent epimerase/dehydratase family AMS56_RS06175 PF00953 Glycosyl transferase family 4 AMS56_RS06180 PF02719 Polysaccharide biosynthesis protein AMS56_RS06190 PF16363 GDP-mannose 4,6 dehydratase AMS56_RS06195 PF13439 Glycosyltransferase Family 4 AMS56_RS06195 PF00534 Glycosyl transferases group 1 AMS56_RS06210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMS56_RS06210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMS56_RS06210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMS56_RS06210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMS56_RS06215 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMS56_RS06225 PF00534 Glycosyl transferases group 1 AMS56_RS06225 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMS56_RS06230 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMS56_RS06235 PF01730 UreF AMS56_RS06240 PF05194 UreE urease accessory protein, C-terminal domain AMS56_RS06240 PF02814 UreE urease accessory protein, N-terminal domain AMS56_RS06245 PF00449 Urease alpha-subunit, N-terminal domain AMS56_RS06245 PF01979 Amidohydrolase family AMS56_RS06250 PF00699 Urease beta subunit AMS56_RS06255 PF00547 Urease, gamma subunit AMS56_RS06260 PF01774 UreD urease accessory protein AMS56_RS06265 PF00005 ABC transporter AMS56_RS06270 PF00005 ABC transporter AMS56_RS06275 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS06280 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS06290 PF00202 Aminotransferase class-III AMS56_RS06295 PF00581 Rhodanese-like domain AMS56_RS06310 PF04055 Radical SAM superfamily AMS56_RS06310 PF06969 HemN C-terminal domain AMS56_RS06315 PF03692 Putative zinc- or iron-chelating domain AMS56_RS06325 PF02673 Bacitracin resistance protein BacA AMS56_RS06330 PF02390 Putative methyltransferase AMS56_RS06340 PF02146 Sir2 family AMS56_RS06345 PF08241 Methyltransferase domain AMS56_RS06350 PF00082 Subtilase family AMS56_RS06350 PF09286 Pro-kumamolisin, activation domain AMS56_RS06355 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMS56_RS06365 PF02325 YGGT family AMS56_RS06380 PF00291 Pyridoxal-phosphate dependent enzyme AMS56_RS06390 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMS56_RS06395 PF01464 Transglycosylase SLT domain AMS56_RS06400 PF00155 Aminotransferase class I and II AMS56_RS06405 PF01029 NusB family AMS56_RS06410 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMS56_RS06415 PF00925 GTP cyclohydrolase II AMS56_RS06415 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMS56_RS06420 PF00677 Lumazine binding domain AMS56_RS06425 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMS56_RS06425 PF01872 RibD C-terminal domain AMS56_RS06430 PF00202 Aminotransferase class-III AMS56_RS06445 PF07690 Major Facilitator Superfamily AMS56_RS06455 PF00291 Pyridoxal-phosphate dependent enzyme AMS56_RS06460 PF00005 ABC transporter AMS56_RS06465 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS06470 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS56_RS06475 PF01418 Helix-turn-helix domain, rpiR family AMS56_RS06475 PF02685 Glucokinase AMS56_RS06475 PF01380 SIS domain AMS56_RS06480 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMS56_RS06485 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMS56_RS06485 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMS56_RS06490 PF01547 Bacterial extracellular solute-binding protein AMS56_RS06495 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS06500 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS06505 PF00005 ABC transporter AMS56_RS06505 PF17912 MalK OB fold domain AMS56_RS06510 PF03458 UPF0126 domain AMS56_RS06515 PF01713 Smr domain AMS56_RS06515 PF00488 MutS domain V AMS56_RS06520 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS56_RS06525 PF17854 FtsK alpha domain AMS56_RS06525 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMS56_RS06525 PF01580 FtsK/SpoIIIE family AMS56_RS06525 PF09397 Ftsk gamma domain AMS56_RS06530 PF03548 Outer membrane lipoprotein carrier protein LolA AMS56_RS06535 PF00004 ATPase family associated with various cellular activities (AAA) AMS56_RS06535 PF12002 MgsA AAA+ ATPase C terminal AMS56_RS06535 PF16193 AAA C-terminal domain AMS56_RS06545 PF02403 Seryl-tRNA synthetase N-terminal domain AMS56_RS06545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMS56_RS06565 PF03775 Septum formation inhibitor MinC, C-terminal domain AMS56_RS06565 PF05209 Septum formation inhibitor MinC, N-terminal domain AMS56_RS06570 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMS56_RS06575 PF03776 Septum formation topological specificity factor MinE AMS56_RS06585 PF00654 Voltage gated chloride channel AMS56_RS06590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMS56_RS06600 PF00083 Sugar (and other) transporter AMS56_RS06600 PF07690 Major Facilitator Superfamily AMS56_RS06630 PF06969 HemN C-terminal domain AMS56_RS06630 PF04055 Radical SAM superfamily AMS56_RS06635 PF01725 Ham1 family AMS56_RS06640 PF03725 3' exoribonuclease family, domain 2 AMS56_RS06640 PF01138 3' exoribonuclease family, domain 1 AMS56_RS06645 PF03755 YicC-like family, N-terminal region AMS56_RS06645 PF08340 Domain of unknown function (DUF1732) AMS56_RS06650 PF00625 Guanylate kinase AMS56_RS06655 PF01192 RNA polymerase Rpb6 AMS56_RS06660 PF02824 TGS domain AMS56_RS06660 PF13291 ACT domain AMS56_RS06660 PF04607 Region found in RelA / SpoT proteins AMS56_RS06675 PF01272 Transcription elongation factor, GreA/GreB, C-term AMS56_RS06675 PF03449 Transcription elongation factor, N-terminal AMS56_RS06680 PF13609 Gram-negative porin AMS56_RS06690 PF00313 'Cold-shock' DNA-binding domain AMS56_RS06695 PF00929 Exonuclease AMS56_RS06695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMS56_RS06695 PF14579 Helix-hairpin-helix motif AMS56_RS06695 PF11490 DNA polymerase III polC-type N-terminus II AMS56_RS06695 PF14480 DNA polymerase III polC-type N-terminus I AMS56_RS06695 PF02811 PHP domain AMS56_RS06695 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMS56_RS06710 PF00593 TonB dependent receptor AMS56_RS06710 PF07715 TonB-dependent Receptor Plug Domain AMS56_RS06755 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMS56_RS06760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS06760 PF03466 LysR substrate binding domain AMS56_RS06765 PF01717 Cobalamin-independent synthase, Catalytic domain AMS56_RS06765 PF08267 Cobalamin-independent synthase, N-terminal domain AMS56_RS06770 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMS56_RS06770 PF01433 Peptidase family M1 domain AMS56_RS06770 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMS56_RS06780 PF01169 Uncharacterized protein family UPF0016 AMS56_RS06785 PF01979 Amidohydrolase family AMS56_RS06790 PF00860 Permease family AMS56_RS06795 PF00962 Adenosine/AMP deaminase AMS56_RS06810 PF02600 Disulfide bond formation protein DsbB AMS56_RS06815 PF01425 Amidase AMS56_RS06820 PF07722 Peptidase C26 AMS56_RS06825 PF07690 Major Facilitator Superfamily AMS56_RS06835 PF01494 FAD binding domain AMS56_RS06845 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMS56_RS06845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS56_RS06845 PF00037 4Fe-4S binding domain AMS56_RS06845 PF01568 Molydopterin dinucleotide binding domain AMS56_RS06845 PF00384 Molybdopterin oxidoreductase AMS56_RS06850 PF00037 4Fe-4S binding domain AMS56_RS06850 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMS56_RS06850 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMS56_RS06860 PF12728 Helix-turn-helix domain AMS56_RS06860 PF12727 PBP superfamily domain AMS56_RS06870 PF00398 Ribosomal RNA adenine dimethylase AMS56_RS06875 PF13419 Haloacid dehalogenase-like hydrolase AMS56_RS06885 PF00691 OmpA family AMS56_RS06890 PF00521 DNA gyrase/topoisomerase IV, subunit A AMS56_RS06890 PF03989 DNA gyrase C-terminal domain, beta-propeller AMS56_RS06900 PF00266 Aminotransferase class-V AMS56_RS06905 PF01817 Chorismate mutase type II AMS56_RS06905 PF01842 ACT domain AMS56_RS06905 PF00800 Prephenate dehydratase AMS56_RS06910 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMS56_RS06915 PF02224 Cytidylate kinase AMS56_RS06920 PF00575 S1 RNA binding domain AMS56_RS06925 PF00216 Bacterial DNA-binding protein AMS56_RS06935 PF18073 Rubredoxin metal binding domain AMS56_RS06940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMS56_RS06940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMS56_RS06940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMS56_RS06945 PF00294 pfkB family carbohydrate kinase AMS56_RS06950 PF01370 NAD dependent epimerase/dehydratase family AMS56_RS06965 PF00291 Pyridoxal-phosphate dependent enzyme AMS56_RS06970 PF13406 Transglycosylase SLT domain AMS56_RS06975 PF00850 Histone deacetylase domain AMS56_RS06980 PF12146 Serine aminopeptidase, S33 AMS56_RS06985 PF00005 ABC transporter AMS56_RS06985 PF09383 NIL domain AMS56_RS06990 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS06995 PF03180 NLPA lipoprotein AMS56_RS07000 PF01012 Electron transfer flavoprotein domain AMS56_RS07005 PF00766 Electron transfer flavoprotein FAD-binding domain AMS56_RS07005 PF01012 Electron transfer flavoprotein domain AMS56_RS07010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS07010 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS07010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS07010 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMS56_RS07015 PF01266 FAD dependent oxidoreductase AMS56_RS07020 PF01037 Lrp/AsnC ligand binding domain AMS56_RS07035 PF07995 Glucose / Sorbosone dehydrogenase AMS56_RS07040 PF00886 Ribosomal protein S16 AMS56_RS07045 PF05239 PRC-barrel domain AMS56_RS07045 PF01782 RimM N-terminal domain AMS56_RS07050 PF01746 tRNA (Guanine-1)-methyltransferase AMS56_RS07055 PF01245 Ribosomal protein L19 AMS56_RS07065 PF00293 NUDIX domain AMS56_RS07070 PF17113 Regulatory signalling modulator protein AmpE AMS56_RS07070 PF03186 CobD/Cbib protein AMS56_RS07080 PF03193 RsgA GTPase AMS56_RS07085 PF01435 Peptidase family M48 AMS56_RS07090 PF00929 Exonuclease AMS56_RS07095 PF00994 Probable molybdopterin binding domain AMS56_RS07100 PF04751 Protein of unknown function (DUF615) AMS56_RS07105 PF01523 Putative modulator of DNA gyrase AMS56_RS07110 PF00186 Dihydrofolate reductase AMS56_RS07115 PF00158 Sigma-54 interaction domain AMS56_RS07115 PF00072 Response regulator receiver domain AMS56_RS07115 PF02954 Bacterial regulatory protein, Fis family AMS56_RS07145 PF00158 Sigma-54 interaction domain AMS56_RS07145 PF00072 Response regulator receiver domain AMS56_RS07145 PF02954 Bacterial regulatory protein, Fis family AMS56_RS07150 PF00303 Thymidylate synthase AMS56_RS07175 PF03061 Thioesterase superfamily AMS56_RS07180 PF10415 Fumarase C C-terminus AMS56_RS07180 PF00206 Lyase AMS56_RS07190 PF01554 MatE AMS56_RS07210 PF05981 CreA protein AMS56_RS07225 PF00037 4Fe-4S binding domain AMS56_RS07225 PF11953 Domain of unknown function (DUF3470) AMS56_RS07230 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMS56_RS07230 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMS56_RS07245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS56_RS07245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS56_RS07250 PF02646 RmuC family AMS56_RS07265 PF03454 MoeA C-terminal region (domain IV) AMS56_RS07265 PF00994 Probable molybdopterin binding domain AMS56_RS07265 PF03453 MoeA N-terminal region (domain I and II) AMS56_RS07270 PF12804 MobA-like NTP transferase domain AMS56_RS07275 PF04055 Radical SAM superfamily AMS56_RS07275 PF06463 Molybdenum Cofactor Synthesis C AMS56_RS07280 PF00575 S1 RNA binding domain AMS56_RS07280 PF12111 Polyribonucleotide phosphorylase C terminal AMS56_RS07280 PF10150 Ribonuclease E/G family AMS56_RS07285 PF01479 S4 domain AMS56_RS07285 PF00849 RNA pseudouridylate synthase AMS56_RS07290 PF13419 Haloacid dehalogenase-like hydrolase AMS56_RS07300 PF01343 Peptidase family S49 AMS56_RS07305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS56_RS07310 PF02545 Maf-like protein AMS56_RS07315 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMS56_RS07320 PF01783 Ribosomal L32p protein family AMS56_RS07325 PF02504 Fatty acid synthesis protein AMS56_RS07330 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMS56_RS07330 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMS56_RS07335 PF00698 Acyl transferase domain AMS56_RS07345 PF00550 Phosphopantetheine attachment site AMS56_RS07350 PF02801 Beta-ketoacyl synthase, C-terminal domain AMS56_RS07350 PF00109 Beta-ketoacyl synthase, N-terminal domain AMS56_RS07360 PF04542 Sigma-70 region 2 AMS56_RS07360 PF08281 Sigma-70, region 4 AMS56_RS07370 PF03888 MucB/RseB N-terminal domain AMS56_RS07370 PF17188 MucB/RseB C-terminal domain AMS56_RS07375 PF13180 PDZ domain AMS56_RS07385 PF06421 GTP-binding protein LepA C-terminus AMS56_RS07385 PF00679 Elongation factor G C-terminus AMS56_RS07385 PF00009 Elongation factor Tu GTP binding domain AMS56_RS07385 PF03144 Elongation factor Tu domain 2 AMS56_RS07390 PF10502 Signal peptidase, peptidase S26 AMS56_RS07395 PF00035 Double-stranded RNA binding motif AMS56_RS07395 PF14622 Ribonuclease-III-like AMS56_RS07400 PF01926 50S ribosome-binding GTPase AMS56_RS07400 PF07650 KH domain AMS56_RS07405 PF11967 Recombination protein O N terminal AMS56_RS07405 PF02565 Recombination protein O C terminal AMS56_RS07410 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMS56_RS07415 PF01648 4'-phosphopantetheinyl transferase superfamily AMS56_RS07420 PF00933 Glycosyl hydrolase family 3 N terminal domain AMS56_RS07425 PF00158 Sigma-54 interaction domain AMS56_RS07425 PF02954 Bacterial regulatory protein, Fis family AMS56_RS07425 PF00072 Response regulator receiver domain AMS56_RS07430 PF08207 Elongation factor P (EF-P) KOW-like domain AMS56_RS07430 PF01132 Elongation factor P (EF-P) OB domain AMS56_RS07430 PF09285 Elongation factor P, C-terminal AMS56_RS07440 PF08459 UvrC Helix-hairpin-helix N-terminal AMS56_RS07440 PF01541 GIY-YIG catalytic domain AMS56_RS07440 PF02151 UvrB/uvrC motif AMS56_RS07445 PF01066 CDP-alcohol phosphatidyltransferase AMS56_RS07465 PF13185 GAF domain AMS56_RS07470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS07470 PF03466 LysR substrate binding domain AMS56_RS07475 PF02678 Pirin AMS56_RS07475 PF05726 Pirin C-terminal cupin domain AMS56_RS07480 PF13673 Acetyltransferase (GNAT) domain AMS56_RS07495 PF02630 SCO1/SenC AMS56_RS07500 PF02358 Trehalose-phosphatase AMS56_RS07505 PF00982 Glycosyltransferase family 20 AMS56_RS07510 PF00005 ABC transporter AMS56_RS07510 PF00664 ABC transporter transmembrane region AMS56_RS07515 PF13439 Glycosyltransferase Family 4 AMS56_RS07515 PF00534 Glycosyl transferases group 1 AMS56_RS07530 PF01266 FAD dependent oxidoreductase AMS56_RS07535 PF13458 Periplasmic binding protein AMS56_RS07540 PF05506 Domain of unknown function (DUF756) AMS56_RS07540 PF04185 Phosphoesterase family AMS56_RS07550 PF08543 Phosphomethylpyrimidine kinase AMS56_RS07555 PF00561 alpha/beta hydrolase fold AMS56_RS07560 PF00296 Luciferase-like monooxygenase AMS56_RS07575 PF04794 YdjC-like protein AMS56_RS07590 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS07595 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS07600 PF00005 ABC transporter AMS56_RS07605 PF12833 Helix-turn-helix domain AMS56_RS07610 PF00202 Aminotransferase class-III AMS56_RS07615 PF04958 Arginine N-succinyltransferase beta subunit AMS56_RS07620 PF04958 Arginine N-succinyltransferase beta subunit AMS56_RS07625 PF00171 Aldehyde dehydrogenase family AMS56_RS07630 PF04996 Succinylarginine dihydrolase AMS56_RS07635 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMS56_RS07645 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS56_RS07655 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMS56_RS07660 PF00510 Cytochrome c oxidase subunit III AMS56_RS07665 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMS56_RS07670 PF06481 COX Aromatic Rich Motif AMS56_RS07670 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMS56_RS07680 PF02082 Transcriptional regulator AMS56_RS07690 PF01883 Iron-sulfur cluster assembly protein AMS56_RS07695 PF01592 NifU-like N terminal domain AMS56_RS07700 PF00266 Aminotransferase class-V AMS56_RS07710 PF00005 ABC transporter AMS56_RS07715 PF01458 Uncharacterized protein family (UPF0051) AMS56_RS07725 PF02203 Tar ligand binding domain homologue AMS56_RS07725 PF00672 HAMP domain AMS56_RS07725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS07730 PF06969 HemN C-terminal domain AMS56_RS07730 PF04055 Radical SAM superfamily AMS56_RS07735 PF00520 Ion transport protein AMS56_RS07735 PF00027 Cyclic nucleotide-binding domain AMS56_RS07750 PF01136 Peptidase family U32 AMS56_RS07755 PF01136 Peptidase family U32 AMS56_RS07760 PF02036 SCP-2 sterol transfer family AMS56_RS07765 PF08859 DGC domain AMS56_RS07800 PF01883 Iron-sulfur cluster assembly protein AMS56_RS07805 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMS56_RS07810 PF00487 Fatty acid desaturase AMS56_RS07815 PF00875 DNA photolyase AMS56_RS07815 PF03441 FAD binding domain of DNA photolyase AMS56_RS07825 PF00196 Bacterial regulatory proteins, luxR family AMS56_RS07825 PF03472 Autoinducer binding domain AMS56_RS07845 PF00221 Aromatic amino acid lyase AMS56_RS07850 PF07702 UTRA domain AMS56_RS07850 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS07855 PF17391 Urocanase N-terminal domain AMS56_RS07855 PF01175 Urocanase Rossmann-like domain AMS56_RS07855 PF17392 Urocanase C-terminal domain AMS56_RS07865 PF01979 Amidohydrolase family AMS56_RS07870 PF01979 Amidohydrolase family AMS56_RS07895 PF07722 Peptidase C26 AMS56_RS07900 PF00120 Glutamine synthetase, catalytic domain AMS56_RS07905 PF00202 Aminotransferase class-III AMS56_RS07915 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AMS56_RS07920 PF01527 Transposase AMS56_RS07925 PF13683 Integrase core domain AMS56_RS07925 PF13276 HTH-like domain AMS56_RS07940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS07940 PF03466 LysR substrate binding domain AMS56_RS07945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS07945 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS07945 PF18158 Adaptive response protein AidB N-terminal domain AMS56_RS07950 PF02515 CoA-transferase family III AMS56_RS07955 PF07690 Major Facilitator Superfamily AMS56_RS07955 PF00083 Sugar (and other) transporter AMS56_RS07960 PF04362 Bacterial Fe(2+) trafficking AMS56_RS07965 PF00696 Amino acid kinase family AMS56_RS07965 PF00583 Acetyltransferase (GNAT) family AMS56_RS07970 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMS56_RS07970 PF00271 Helicase conserved C-terminal domain AMS56_RS07970 PF04408 Helicase associated domain (HA2) AMS56_RS07970 PF11898 Domain of unknown function (DUF3418) AMS56_RS07970 PF00270 DEAD/DEAH box helicase AMS56_RS07990 PF02464 Competence-damaged protein AMS56_RS07990 PF00994 Probable molybdopterin binding domain AMS56_RS07990 PF18146 Damage-inducible protein CinA KH domain AMS56_RS08000 PF00120 Glutamine synthetase, catalytic domain AMS56_RS08000 PF03951 Glutamine synthetase, beta-Grasp domain AMS56_RS08005 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS08005 PF00989 PAS fold AMS56_RS08005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS08010 PF00072 Response regulator receiver domain AMS56_RS08010 PF00158 Sigma-54 interaction domain AMS56_RS08010 PF02954 Bacterial regulatory protein, Fis family AMS56_RS08020 PF00072 Response regulator receiver domain AMS56_RS08020 PF00196 Bacterial regulatory proteins, luxR family AMS56_RS08025 PF07730 Histidine kinase AMS56_RS08030 PF02665 Nitrate reductase gamma subunit AMS56_RS08035 PF02613 Nitrate reductase delta subunit AMS56_RS08040 PF13247 4Fe-4S dicluster domain AMS56_RS08040 PF14711 Respiratory nitrate reductase beta C-terminal AMS56_RS08045 PF01568 Molydopterin dinucleotide binding domain AMS56_RS08045 PF14710 Respiratory nitrate reductase alpha N-terminal AMS56_RS08045 PF00384 Molybdopterin oxidoreductase AMS56_RS08050 PF07690 Major Facilitator Superfamily AMS56_RS08055 PF07690 Major Facilitator Superfamily AMS56_RS08065 PF00817 impB/mucB/samB family AMS56_RS08065 PF11799 impB/mucB/samB family C-terminal domain AMS56_RS08070 PF01432 Peptidase family M3 AMS56_RS08075 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMS56_RS08075 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMS56_RS08080 PF00072 Response regulator receiver domain AMS56_RS08080 PF00196 Bacterial regulatory proteins, luxR family AMS56_RS08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS08085 PF00989 PAS fold AMS56_RS08085 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS08090 PF00456 Transketolase, thiamine diphosphate binding domain AMS56_RS08090 PF17831 Pyruvate dehydrogenase E1 component middle domain AMS56_RS08095 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMS56_RS08095 PF00364 Biotin-requiring enzyme AMS56_RS08095 PF02817 e3 binding domain AMS56_RS08100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMS56_RS08100 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS56_RS08105 PF09361 Phasin protein AMS56_RS08110 PF00768 D-alanyl-D-alanine carboxypeptidase AMS56_RS08115 PF01614 Bacterial transcriptional regulator AMS56_RS08115 PF09339 IclR helix-turn-helix domain AMS56_RS08120 PF02754 Cysteine-rich domain AMS56_RS08125 PF11870 Domain of unknown function (DUF3390) AMS56_RS08125 PF02589 LUD domain AMS56_RS08125 PF13183 4Fe-4S dicluster domain AMS56_RS08135 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMS56_RS08140 PF02082 Transcriptional regulator AMS56_RS08145 PF00266 Aminotransferase class-V AMS56_RS08150 PF01592 NifU-like N terminal domain AMS56_RS08155 PF01521 Iron-sulphur cluster biosynthesis AMS56_RS08160 PF07743 HSCB C-terminal oligomerisation domain AMS56_RS08165 PF00012 Hsp70 protein AMS56_RS08170 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS56_RS08175 PF04384 Iron-sulphur cluster assembly AMS56_RS08185 PF00152 tRNA synthetases class II (D, K and N) AMS56_RS08185 PF01336 OB-fold nucleic acid binding domain AMS56_RS08190 PF00472 RF-1 domain AMS56_RS08190 PF03462 PCRF domain AMS56_RS08195 PF02272 DHHA1 domain AMS56_RS08195 PF17768 RecJ OB domain AMS56_RS08195 PF01368 DHH family AMS56_RS08205 PF02687 FtsX-like permease family AMS56_RS08205 PF12704 MacB-like periplasmic core domain AMS56_RS08210 PF00005 ABC transporter AMS56_RS08215 PF01026 TatD related DNase AMS56_RS08220 PF00753 Metallo-beta-lactamase superfamily AMS56_RS08220 PF03772 Competence protein AMS56_RS08225 PF00561 alpha/beta hydrolase fold AMS56_RS08225 PF08386 TAP-like protein AMS56_RS08230 PF06418 CTP synthase N-terminus AMS56_RS08230 PF00117 Glutamine amidotransferase class-I AMS56_RS08235 PF00793 DAHP synthetase I family AMS56_RS08240 PF00113 Enolase, C-terminal TIM barrel domain AMS56_RS08240 PF03952 Enolase, N-terminal domain AMS56_RS08245 PF04977 Septum formation initiator AMS56_RS08255 PF01430 Hsp33 protein AMS56_RS08260 PF00132 Bacterial transferase hexapeptide (six repeats) AMS56_RS08265 PF04305 Protein of unknown function (DUF455) AMS56_RS08270 PF00561 alpha/beta hydrolase fold AMS56_RS08275 PF02811 PHP domain AMS56_RS08280 PF01300 Telomere recombination AMS56_RS08285 PF02163 Peptidase family M50 AMS56_RS08290 PF00579 tRNA synthetases class I (W and Y) AMS56_RS08300 PF00701 Dihydrodipicolinate synthetase family AMS56_RS08305 PF06804 NlpB/DapX lipoprotein AMS56_RS08310 PF10996 Beta-Casp domain AMS56_RS08310 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMS56_RS08310 PF00753 Metallo-beta-lactamase superfamily AMS56_RS08315 PF08007 Cupin superfamily protein AMS56_RS08320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMS56_RS08330 PF05188 MutS domain II AMS56_RS08330 PF00488 MutS domain V AMS56_RS08330 PF01624 MutS domain I AMS56_RS08330 PF05190 MutS family domain IV AMS56_RS08330 PF05192 MutS domain III AMS56_RS08345 PF00459 Inositol monophosphatase family AMS56_RS08350 PF00588 SpoU rRNA Methylase family AMS56_RS08355 PF00132 Bacterial transferase hexapeptide (six repeats) AMS56_RS08360 PF00149 Calcineurin-like phosphoesterase AMS56_RS08365 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMS56_RS08370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMS56_RS08380 PF01406 tRNA synthetases class I (C) catalytic domain AMS56_RS08380 PF09190 DALR domain AMS56_RS08390 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMS56_RS08395 PF01171 PP-loop family AMS56_RS08395 PF09179 TilS substrate binding domain AMS56_RS08395 PF11734 TilS substrate C-terminal domain AMS56_RS08400 PF13840 ACT domain AMS56_RS08400 PF00696 Amino acid kinase family AMS56_RS08400 PF01842 ACT domain AMS56_RS08430 PF00873 AcrB/AcrD/AcrF family AMS56_RS08435 PF13533 Biotin-lipoyl like AMS56_RS08445 PF00009 Elongation factor Tu GTP binding domain AMS56_RS08450 PF00501 AMP-binding enzyme AMS56_RS08450 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS08450 PF00668 Condensation domain AMS56_RS08450 PF00975 Thioesterase domain AMS56_RS08450 PF00550 Phosphopantetheine attachment site AMS56_RS08465 PF00668 Condensation domain AMS56_RS08465 PF00550 Phosphopantetheine attachment site AMS56_RS08465 PF00501 AMP-binding enzyme AMS56_RS08465 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS08475 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMS56_RS08495 PF00456 Transketolase, thiamine diphosphate binding domain AMS56_RS08495 PF02780 Transketolase, C-terminal domain AMS56_RS08495 PF02779 Transketolase, pyrimidine binding domain AMS56_RS08500 PF02780 Transketolase, C-terminal domain AMS56_RS08500 PF02779 Transketolase, pyrimidine binding domain AMS56_RS08510 PF01757 Acyltransferase family AMS56_RS08515 PF00266 Aminotransferase class-V AMS56_RS08525 PF01507 Phosphoadenosine phosphosulfate reductase family AMS56_RS08530 PF00009 Elongation factor Tu GTP binding domain AMS56_RS08535 PF00291 Pyridoxal-phosphate dependent enzyme AMS56_RS08540 PF00206 Lyase AMS56_RS08540 PF02655 ATP-grasp domain AMS56_RS08550 PF00557 Metallopeptidase family M24 AMS56_RS08560 PF11953 Domain of unknown function (DUF3470) AMS56_RS08560 PF00037 4Fe-4S binding domain AMS56_RS08565 PF06463 Molybdenum Cofactor Synthesis C AMS56_RS08565 PF04055 Radical SAM superfamily AMS56_RS08570 PF00175 Oxidoreductase NAD-binding domain AMS56_RS08570 PF00970 Oxidoreductase FAD-binding domain AMS56_RS08575 PF01568 Molydopterin dinucleotide binding domain AMS56_RS08575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS56_RS08575 PF00384 Molybdopterin oxidoreductase AMS56_RS08595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS56_RS08600 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS08605 PF12911 N-terminal TM domain of oligopeptide transport permease C AMS56_RS08605 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS08610 PF00005 ABC transporter AMS56_RS08610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS56_RS08615 PF00877 NlpC/P60 family AMS56_RS08620 PF01734 Patatin-like phospholipase AMS56_RS08625 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMS56_RS08665 PF02311 AraC-like ligand binding domain AMS56_RS08665 PF12833 Helix-turn-helix domain AMS56_RS08670 PF03737 Aldolase/RraA AMS56_RS08680 PF01274 Malate synthase AMS56_RS08690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS08690 PF03466 LysR substrate binding domain AMS56_RS08695 PF00582 Universal stress protein family AMS56_RS08700 PF00463 Isocitrate lyase family AMS56_RS08705 PF00270 DEAD/DEAH box helicase AMS56_RS08705 PF00271 Helicase conserved C-terminal domain AMS56_RS08715 PF00814 Glycoprotease family AMS56_RS08725 PF03167 Uracil DNA glycosylase superfamily AMS56_RS08740 PF08543 Phosphomethylpyrimidine kinase AMS56_RS08745 PF07690 Major Facilitator Superfamily AMS56_RS08750 PF01168 Alanine racemase, N-terminal domain AMS56_RS08750 PF00842 Alanine racemase, C-terminal domain AMS56_RS08755 PF18073 Rubredoxin metal binding domain AMS56_RS08765 PF00005 ABC transporter AMS56_RS08765 PF12848 ABC transporter AMS56_RS08770 PF00255 Glutathione peroxidase AMS56_RS08775 PF13091 PLD-like domain AMS56_RS08785 PF05175 Methyltransferase small domain AMS56_RS08790 PF07687 Peptidase dimerisation domain AMS56_RS08790 PF01546 Peptidase family M20/M25/M40 AMS56_RS08795 PF03960 ArsC family AMS56_RS08800 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMS56_RS08800 PF00132 Bacterial transferase hexapeptide (six repeats) AMS56_RS08800 PF14602 Hexapeptide repeat of succinyl-transferase AMS56_RS08805 PF00155 Aminotransferase class I and II AMS56_RS08815 PF06470 SMC proteins Flexible Hinge Domain AMS56_RS08815 PF02463 RecF/RecN/SMC N terminal domain AMS56_RS08830 PF12826 Helix-hairpin-helix motif AMS56_RS08830 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMS56_RS08830 PF03120 NAD-dependent DNA ligase OB-fold domain AMS56_RS08830 PF01653 NAD-dependent DNA ligase adenylation domain AMS56_RS08830 PF00533 BRCA1 C Terminus (BRCT) domain AMS56_RS08835 PF01327 Polypeptide deformylase AMS56_RS08840 PF01479 S4 domain AMS56_RS08840 PF00849 RNA pseudouridylate synthase AMS56_RS08845 PF08335 GlnD PII-uridylyltransferase AMS56_RS08845 PF01909 Nucleotidyltransferase domain AMS56_RS08845 PF01966 HD domain AMS56_RS08850 PF00557 Metallopeptidase family M24 AMS56_RS08860 PF00318 Ribosomal protein S2 AMS56_RS08865 PF00889 Elongation factor TS AMS56_RS08870 PF00696 Amino acid kinase family AMS56_RS08875 PF01765 Ribosome recycling factor AMS56_RS08880 PF01255 Putative undecaprenyl diphosphate synthase AMS56_RS08890 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMS56_RS08890 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMS56_RS08890 PF13288 DXP reductoisomerase C-terminal domain AMS56_RS08895 PF02163 Peptidase family M50 AMS56_RS08895 PF17820 PDZ domain AMS56_RS08900 PF07244 Surface antigen variable number repeat AMS56_RS08900 PF01103 Surface antigen AMS56_RS08910 PF00132 Bacterial transferase hexapeptide (six repeats) AMS56_RS08910 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMS56_RS08915 PF07977 FabA-like domain AMS56_RS08920 PF00132 Bacterial transferase hexapeptide (six repeats) AMS56_RS08920 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMS56_RS08925 PF02684 Lipid-A-disaccharide synthetase AMS56_RS08930 PF01351 Ribonuclease HII AMS56_RS08935 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMS56_RS08935 PF00588 SpoU rRNA Methylase family AMS56_RS08940 PF03618 Kinase/pyrophosphorylase AMS56_RS08945 PF09286 Pro-kumamolisin, activation domain AMS56_RS08945 PF00082 Subtilase family AMS56_RS08960 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMS56_RS08960 PF00391 PEP-utilising enzyme, mobile domain AMS56_RS08960 PF02896 PEP-utilising enzyme, TIM barrel domain AMS56_RS08970 PF01145 SPFH domain / Band 7 family AMS56_RS08970 PF16200 C-terminal region of band_7 AMS56_RS08975 PF01668 SmpB protein AMS56_RS08980 PF03364 Polyketide cyclase / dehydrase and lipid transport AMS56_RS08985 PF03658 RnfH family Ubiquitin AMS56_RS08990 PF00892 EamA-like transporter family AMS56_RS09010 PF00571 CBS domain AMS56_RS09010 PF00478 IMP dehydrogenase / GMP reductase domain AMS56_RS09020 PF02540 NAD synthase AMS56_RS09020 PF00117 Glutamine amidotransferase class-I AMS56_RS09020 PF00958 GMP synthase C terminal domain AMS56_RS09050 PF06470 SMC proteins Flexible Hinge Domain AMS56_RS09050 PF02463 RecF/RecN/SMC N terminal domain AMS56_RS09060 PF07690 Major Facilitator Superfamily AMS56_RS09070 PF09350 Domain of unknown function (DUF1992) AMS56_RS09075 PF14437 MafB19-like deaminase AMS56_RS09080 PF02016 LD-carboxypeptidase N-terminal domain AMS56_RS09080 PF17676 LD-carboxypeptidase C-terminal domain AMS56_RS09085 PF07729 FCD domain AMS56_RS09085 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS09090 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMS56_RS09095 PF01177 Asp/Glu/Hydantoin racemase AMS56_RS09105 PF01014 Uricase AMS56_RS09105 PF09349 OHCU decarboxylase AMS56_RS09110 PF03561 Allantoicase repeat AMS56_RS09115 PF04115 Ureidoglycolate lyase AMS56_RS09125 PF00576 HIUase/Transthyretin family AMS56_RS09130 PF01979 Amidohydrolase family AMS56_RS09135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS09135 PF03466 LysR substrate binding domain AMS56_RS09140 PF07311 Dodecin AMS56_RS09145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMS56_RS09145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMS56_RS09155 PF01741 Large-conductance mechanosensitive channel, MscL AMS56_RS09170 PF00912 Transglycosylase AMS56_RS09170 PF17092 Penicillin-binding protein OB-like domain AMS56_RS09170 PF00905 Penicillin binding protein transpeptidase domain AMS56_RS09185 PF00291 Pyridoxal-phosphate dependent enzyme AMS56_RS09190 PF07687 Peptidase dimerisation domain AMS56_RS09190 PF01546 Peptidase family M20/M25/M40 AMS56_RS09200 PF03461 TRCF domain AMS56_RS09200 PF00270 DEAD/DEAH box helicase AMS56_RS09200 PF02559 CarD-like/TRCF domain AMS56_RS09200 PF17757 UvrB interaction domain AMS56_RS09200 PF00271 Helicase conserved C-terminal domain AMS56_RS09205 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMS56_RS09210 PF02542 YgbB family AMS56_RS09215 PF02627 Carboxymuconolactone decarboxylase family AMS56_RS09220 PF00578 AhpC/TSA family AMS56_RS09225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS09225 PF00672 HAMP domain AMS56_RS09225 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS09230 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS09230 PF00072 Response regulator receiver domain AMS56_RS09305 PF00850 Histone deacetylase domain AMS56_RS09315 PF00267 Gram-negative porin AMS56_RS09325 PF02558 Ketopantoate reductase PanE/ApbA AMS56_RS09325 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMS56_RS09330 PF01047 MarR family AMS56_RS09335 PF02595 Glycerate kinase family AMS56_RS09340 PF05697 Bacterial trigger factor protein (TF) AMS56_RS09340 PF05698 Bacterial trigger factor protein (TF) C-terminus AMS56_RS09340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMS56_RS09345 PF00574 Clp protease AMS56_RS09350 PF10431 C-terminal, D2-small domain, of ClpB protein AMS56_RS09350 PF06689 ClpX C4-type zinc finger AMS56_RS09350 PF07724 AAA domain (Cdc48 subfamily) AMS56_RS09355 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMS56_RS09355 PF05362 Lon protease (S16) C-terminal proteolytic domain AMS56_RS09355 PF00004 ATPase family associated with various cellular activities (AAA) AMS56_RS09405 PF13472 GDSL-like Lipase/Acylhydrolase family AMS56_RS09410 PF00005 ABC transporter AMS56_RS09415 PF00342 Phosphoglucose isomerase AMS56_RS09420 PF01256 Carbohydrate kinase AMS56_RS09425 PF01266 FAD dependent oxidoreductase AMS56_RS09435 PF02769 AIR synthase related protein, C-terminal domain AMS56_RS09435 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMS56_RS09435 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMS56_RS09450 PF01722 BolA-like protein AMS56_RS09455 PF04279 Intracellular septation protein A AMS56_RS09460 PF01641 SelR domain AMS56_RS09465 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMS56_RS09470 PF00501 AMP-binding enzyme AMS56_RS09470 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS09475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMS56_RS09475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMS56_RS09475 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS09480 PF00857 Isochorismatase family AMS56_RS09485 PF00108 Thiolase, N-terminal domain AMS56_RS09485 PF02803 Thiolase, C-terminal domain AMS56_RS09505 PF16884 N-terminal domain of oxidoreductase AMS56_RS09505 PF00107 Zinc-binding dehydrogenase AMS56_RS09510 PF07859 alpha/beta hydrolase fold AMS56_RS09515 PF13673 Acetyltransferase (GNAT) domain AMS56_RS09525 PF01571 Aminomethyltransferase folate-binding domain AMS56_RS09530 PF02618 YceG-like family AMS56_RS09535 PF02223 Thymidylate kinase AMS56_RS09540 PF09115 DNA polymerase III, delta subunit, C terminal AMS56_RS09545 PF00583 Acetyltransferase (GNAT) family AMS56_RS09550 PF01026 TatD related DNase AMS56_RS09570 PF02463 RecF/RecN/SMC N terminal domain AMS56_RS09575 PF00534 Glycosyl transferases group 1 AMS56_RS09575 PF13439 Glycosyltransferase Family 4 AMS56_RS09595 PF17763 Glutaminase/Asparaginase C-terminal domain AMS56_RS09595 PF00710 Asparaginase, N-terminal AMS56_RS09605 PF01476 LysM domain AMS56_RS09605 PF04972 BON domain AMS56_RS09615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMS56_RS09615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMS56_RS09620 PF01261 Xylose isomerase-like TIM barrel AMS56_RS09625 PF00205 Thiamine pyrophosphate enzyme, central domain AMS56_RS09625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS56_RS09625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS56_RS09630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS09630 PF03466 LysR substrate binding domain AMS56_RS09645 PF04542 Sigma-70 region 2 AMS56_RS09645 PF08281 Sigma-70, region 4 AMS56_RS09655 PF01250 Ribosomal protein S6 AMS56_RS09665 PF01084 Ribosomal protein S18 AMS56_RS09670 PF03948 Ribosomal protein L9, C-terminal domain AMS56_RS09670 PF01281 Ribosomal protein L9, N-terminal domain AMS56_RS09675 PF03796 DnaB-like helicase C terminal domain AMS56_RS09675 PF00772 DnaB-like helicase N terminal domain AMS56_RS09685 PF01384 Phosphate transporter family AMS56_RS09690 PF00877 NlpC/P60 family AMS56_RS09695 PF13638 PIN domain AMS56_RS09695 PF02562 PhoH-like protein AMS56_RS09700 PF00578 AhpC/TSA family AMS56_RS09705 PF01522 Polysaccharide deacetylase AMS56_RS09710 PF02911 Formyl transferase, C-terminal domain AMS56_RS09710 PF01370 NAD dependent epimerase/dehydratase family AMS56_RS09710 PF00551 Formyl transferase AMS56_RS09715 PF00551 Formyl transferase AMS56_RS09715 PF02911 Formyl transferase, C-terminal domain AMS56_RS09715 PF01370 NAD dependent epimerase/dehydratase family AMS56_RS09720 PF00535 Glycosyl transferase family 2 AMS56_RS09725 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMS56_RS09735 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AMS56_RS09745 PF00155 Aminotransferase class I and II AMS56_RS09750 PF03447 Homoserine dehydrogenase, NAD binding domain AMS56_RS09750 PF00742 Homoserine dehydrogenase AMS56_RS09750 PF01842 ACT domain AMS56_RS09755 PF14821 Threonine synthase N terminus AMS56_RS09755 PF00291 Pyridoxal-phosphate dependent enzyme AMS56_RS09760 PF03453 MoeA N-terminal region (domain I and II) AMS56_RS09760 PF03454 MoeA C-terminal region (domain IV) AMS56_RS09760 PF00994 Probable molybdopterin binding domain AMS56_RS09765 PF02597 ThiS family AMS56_RS09770 PF02391 MoaE protein AMS56_RS09775 PF01152 Bacterial-like globin AMS56_RS09780 PF02082 Transcriptional regulator AMS56_RS09785 PF00004 ATPase family associated with various cellular activities (AAA) AMS56_RS09785 PF07724 AAA domain (Cdc48 subfamily) AMS56_RS09785 PF17871 AAA lid domain AMS56_RS09785 PF02861 Clp amino terminal domain, pathogenicity island component AMS56_RS09785 PF10431 C-terminal, D2-small domain, of ClpB protein AMS56_RS09810 PF01554 MatE AMS56_RS09820 PF01197 Ribosomal protein L31 AMS56_RS09825 PF06167 Glucose-regulated metallo-peptidase M90 AMS56_RS09830 PF07690 Major Facilitator Superfamily AMS56_RS09835 PF13411 MerR HTH family regulatory protein AMS56_RS09840 PF07498 Rho termination factor, N-terminal domain AMS56_RS09840 PF07497 Rho termination factor, RNA-binding domain AMS56_RS09840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS56_RS09850 PF00085 Thioredoxin AMS56_RS09855 PF12170 DNA polymerase III tau subunit V interacting with alpha AMS56_RS09855 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMS56_RS09855 PF12169 DNA polymerase III subunits gamma and tau domain III AMS56_RS09860 PF02575 YbaB/EbfC DNA-binding family AMS56_RS09865 PF02132 RecR protein AMS56_RS09865 PF13662 Toprim domain AMS56_RS09870 PF02515 CoA-transferase family III AMS56_RS09875 PF01975 Survival protein SurE AMS56_RS09885 PF01551 Peptidase family M23 AMS56_RS09885 PF01476 LysM domain AMS56_RS09890 PF00140 Sigma-70 factor, region 1.2 AMS56_RS09890 PF04542 Sigma-70 region 2 AMS56_RS09890 PF04545 Sigma-70, region 4 AMS56_RS09890 PF04539 Sigma-70 region 3 AMS56_RS09910 PF05958 tRNA (Uracil-5-)-methyltransferase AMS56_RS09915 PF01027 Inhibitor of apoptosis-promoting Bax1 AMS56_RS09920 PF00334 Nucleoside diphosphate kinase AMS56_RS09925 PF04055 Radical SAM superfamily AMS56_RS09935 PF04551 GcpE protein AMS56_RS09940 PF13393 Histidyl-tRNA synthetase AMS56_RS09940 PF03129 Anticodon binding domain AMS56_RS09945 PF09976 Tetratricopeptide repeat-like domain AMS56_RS09950 PF13360 PQQ-like domain AMS56_RS09955 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMS56_RS09955 PF01926 50S ribosome-binding GTPase AMS56_RS09960 PF17209 Hfq protein AMS56_RS09965 PF16360 GTP-binding GTPase Middle Region AMS56_RS09965 PF13167 GTP-binding GTPase N-terminal AMS56_RS09965 PF01926 50S ribosome-binding GTPase AMS56_RS09970 PF01145 SPFH domain / Band 7 family AMS56_RS09970 PF12221 Bacterial membrane protein N terminal AMS56_RS09975 PF01145 SPFH domain / Band 7 family AMS56_RS09985 PF13393 Histidyl-tRNA synthetase AMS56_RS09990 PF00709 Adenylosuccinate synthetase AMS56_RS09995 PF00156 Phosphoribosyl transferase domain AMS56_RS10000 PF13542 Helix-turn-helix domain of transposase family ISL3 AMS56_RS10000 PF01610 Transposase AMS56_RS10000 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AMS56_RS10005 PF02705 K+ potassium transporter AMS56_RS10010 PF01610 Transposase AMS56_RS10010 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AMS56_RS10010 PF13542 Helix-turn-helix domain of transposase family ISL3 AMS56_RS10015 PF17674 HHH domain AMS56_RS10015 PF00575 S1 RNA binding domain AMS56_RS10015 PF16921 Tex protein YqgF-like domain AMS56_RS10015 PF09371 Tex-like protein N-terminal domain AMS56_RS10030 PF13307 Helicase C-terminal domain AMS56_RS10030 PF04851 Type III restriction enzyme, res subunit AMS56_RS10035 PF13525 Outer membrane lipoprotein AMS56_RS10040 PF01479 S4 domain AMS56_RS10040 PF00849 RNA pseudouridylate synthase AMS56_RS10045 PF02578 Multi-copper polyphenol oxidoreductase laccase AMS56_RS10050 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMS56_RS10055 PF02803 Thiolase, C-terminal domain AMS56_RS10055 PF00108 Thiolase, N-terminal domain AMS56_RS10060 PF00106 short chain dehydrogenase AMS56_RS10065 PF05233 PHB accumulation regulatory domain AMS56_RS10065 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMS56_RS10070 PF00919 Uncharacterized protein family UPF0004 AMS56_RS10070 PF18693 TRAM domain AMS56_RS10070 PF04055 Radical SAM superfamily AMS56_RS10075 PF00294 pfkB family carbohydrate kinase AMS56_RS10080 PF00108 Thiolase, N-terminal domain AMS56_RS10080 PF02803 Thiolase, C-terminal domain AMS56_RS10090 PF01053 Cys/Met metabolism PLP-dependent enzyme AMS56_RS10105 PF03649 Uncharacterised protein family (UPF0014) AMS56_RS10110 PF00005 ABC transporter AMS56_RS10115 PF05170 AsmA family AMS56_RS10120 PF12848 ABC transporter AMS56_RS10120 PF00005 ABC transporter AMS56_RS10130 PF00171 Aldehyde dehydrogenase family AMS56_RS10135 PF03060 Nitronate monooxygenase AMS56_RS10140 PF03922 OmpW family AMS56_RS10150 PF01566 Natural resistance-associated macrophage protein AMS56_RS10155 PF13416 Bacterial extracellular solute-binding protein AMS56_RS10160 PF08402 TOBE domain AMS56_RS10160 PF00005 ABC transporter AMS56_RS10165 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS10170 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS10175 PF01925 Sulfite exporter TauE/SafE AMS56_RS10185 PF00753 Metallo-beta-lactamase superfamily AMS56_RS10190 PF02954 Bacterial regulatory protein, Fis family AMS56_RS10190 PF00158 Sigma-54 interaction domain AMS56_RS10190 PF00072 Response regulator receiver domain AMS56_RS10200 PF13443 Cro/C1-type HTH DNA-binding domain AMS56_RS10220 PF02321 Outer membrane efflux protein AMS56_RS10225 PF00873 AcrB/AcrD/AcrF family AMS56_RS10230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS10235 PF08361 MAATS-type transcriptional repressor, C-terminal region AMS56_RS10235 PF00440 Bacterial regulatory proteins, tetR family AMS56_RS10240 PF00654 Voltage gated chloride channel AMS56_RS10245 PF03601 Conserved hypothetical protein 698 AMS56_RS10250 PF03466 LysR substrate binding domain AMS56_RS10250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS10265 PF00294 pfkB family carbohydrate kinase AMS56_RS10270 PF07690 Major Facilitator Superfamily AMS56_RS10275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS56_RS10275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS56_RS10280 PF00356 Bacterial regulatory proteins, lacI family AMS56_RS10375 PF01544 CorA-like Mg2+ transporter protein AMS56_RS10410 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMS56_RS10410 PF12795 Mechanosensitive ion channel porin domain AMS56_RS10410 PF00924 Mechanosensitive ion channel AMS56_RS10415 PF04205 FMN-binding domain AMS56_RS10415 PF12801 4Fe-4S binding domain AMS56_RS10440 PF12679 ABC-2 family transporter protein AMS56_RS10445 PF00005 ABC transporter AMS56_RS10450 PF05048 Periplasmic copper-binding protein (NosD) AMS56_RS10455 PF18764 Nitrous oxide reductase propeller repeat AMS56_RS10455 PF13473 Cupredoxin-like domain AMS56_RS10455 PF18793 Nitrous oxide reductase propeller repeat 2 AMS56_RS10460 PF02424 ApbE family AMS56_RS10465 PF00005 ABC transporter AMS56_RS10475 PF00672 HAMP domain AMS56_RS10475 PF02203 Tar ligand binding domain homologue AMS56_RS10475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS10485 PF02733 Dak1 domain AMS56_RS10485 PF02734 DAK2 domain AMS56_RS10490 PF00355 Rieske [2Fe-2S] domain AMS56_RS10495 PF00355 Rieske [2Fe-2S] domain AMS56_RS10500 PF00999 Sodium/hydrogen exchanger family AMS56_RS10505 PF04820 Tryptophan halogenase AMS56_RS10555 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AMS56_RS10555 PF02753 Pili assembly chaperone PapD, C-terminal domain AMS56_RS10560 PF13953 PapC C-terminal domain AMS56_RS10560 PF13954 PapC N-terminal domain AMS56_RS10560 PF00577 Outer membrane usher protein AMS56_RS10590 PF05658 Head domain of trimeric autotransporter adhesin AMS56_RS10590 PF13018 Extended Signal Peptide of Type V secretion system AMS56_RS10590 PF03895 YadA-like membrane anchor domain AMS56_RS10590 PF05662 Coiled stalk of trimeric autotransporter adhesin AMS56_RS10605 PF00196 Bacterial regulatory proteins, luxR family AMS56_RS10605 PF00072 Response regulator receiver domain AMS56_RS10610 PF09456 RcsC Alpha-Beta-Loop (ABL) AMS56_RS10610 PF00072 Response regulator receiver domain AMS56_RS10610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS10610 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS10635 PF00872 Transposase, Mutator family AMS56_RS10650 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS10650 PF07729 FCD domain AMS56_RS10660 PF00561 alpha/beta hydrolase fold AMS56_RS10665 PF01613 Flavin reductase like domain AMS56_RS10670 PF00296 Luciferase-like monooxygenase AMS56_RS10675 PF00171 Aldehyde dehydrogenase family AMS56_RS10690 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS10700 PF00005 ABC transporter AMS56_RS10700 PF08402 TOBE domain AMS56_RS10710 PF00171 Aldehyde dehydrogenase family AMS56_RS10715 PF13609 Gram-negative porin AMS56_RS10725 PF00816 H-NS histone family AMS56_RS10730 PF01389 OmpA-like transmembrane domain AMS56_RS10730 PF00691 OmpA family AMS56_RS10755 PF00005 ABC transporter AMS56_RS10755 PF03412 Peptidase C39 family AMS56_RS10755 PF00664 ABC transporter transmembrane region AMS56_RS10760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS10760 PF00529 HlyD membrane-fusion protein of T1SS AMS56_RS10780 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS10780 PF00072 Response regulator receiver domain AMS56_RS10785 PF13340 Putative transposase of IS4/5 family (DUF4096) AMS56_RS10800 PF01527 Transposase AMS56_RS10805 PF13609 Gram-negative porin AMS56_RS10815 PF00221 Aromatic amino acid lyase AMS56_RS10820 PF07690 Major Facilitator Superfamily AMS56_RS10825 PF17391 Urocanase N-terminal domain AMS56_RS10825 PF17392 Urocanase C-terminal domain AMS56_RS10825 PF01175 Urocanase Rossmann-like domain AMS56_RS10835 PF03466 LysR substrate binding domain AMS56_RS10835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS10840 PF01979 Amidohydrolase family AMS56_RS10845 PF01546 Peptidase family M20/M25/M40 AMS56_RS10845 PF07687 Peptidase dimerisation domain AMS56_RS10850 PF00581 Rhodanese-like domain AMS56_RS10860 PF08281 Sigma-70, region 4 AMS56_RS10860 PF04542 Sigma-70 region 2 AMS56_RS10865 PF06532 Negative regulator of sigma F AMS56_RS10885 PF05114 Protein of unknown function (DUF692) AMS56_RS10900 PF01804 Penicillin amidase AMS56_RS10905 PF16861 Carbamoyltransferase C-terminus AMS56_RS10905 PF02543 Carbamoyltransferase N-terminus AMS56_RS10910 PF00668 Condensation domain AMS56_RS10910 PF00501 AMP-binding enzyme AMS56_RS10910 PF00550 Phosphopantetheine attachment site AMS56_RS10910 PF00975 Thioesterase domain AMS56_RS10910 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS10920 PF01212 Beta-eliminating lyase AMS56_RS10925 PF00206 Lyase AMS56_RS10925 PF02655 ATP-grasp domain AMS56_RS10930 PF00291 Pyridoxal-phosphate dependent enzyme AMS56_RS10950 PF00206 Lyase AMS56_RS10950 PF14698 Argininosuccinate lyase C-terminal AMS56_RS10955 PF00764 Arginosuccinate synthase AMS56_RS10960 PF18216 N-formyltransferase dimerization C-terminal domain AMS56_RS10960 PF00551 Formyl transferase AMS56_RS10970 PF00155 Aminotransferase class I and II AMS56_RS10980 PF03621 MbtH-like protein AMS56_RS10995 PF13609 Gram-negative porin AMS56_RS11000 PF12833 Helix-turn-helix domain AMS56_RS11000 PF12852 Cupin AMS56_RS11005 PF00892 EamA-like transporter family AMS56_RS11010 PF01584 CheW-like domain AMS56_RS11015 PF02203 Tar ligand binding domain homologue AMS56_RS11015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS11015 PF00672 HAMP domain AMS56_RS11030 PF00501 AMP-binding enzyme AMS56_RS11030 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS11035 PF07690 Major Facilitator Superfamily AMS56_RS11040 PF13649 Methyltransferase domain AMS56_RS11045 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMS56_RS11050 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS11055 PF00005 ABC transporter AMS56_RS11060 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS11070 PF13520 Amino acid permease AMS56_RS11080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMS56_RS11080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMS56_RS11085 PF00696 Amino acid kinase family AMS56_RS11095 PF03928 Haem-degrading AMS56_RS11100 PF03466 LysR substrate binding domain AMS56_RS11100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS11105 PF02798 Glutathione S-transferase, N-terminal domain AMS56_RS11105 PF00043 Glutathione S-transferase, C-terminal domain AMS56_RS11120 PF13458 Periplasmic binding protein AMS56_RS11125 PF01047 MarR family AMS56_RS11130 PF07690 Major Facilitator Superfamily AMS56_RS11135 PF02638 Glycosyl hydrolase-like 10 AMS56_RS11140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS56_RS11145 PF02571 Precorrin-6x reductase CbiJ/CobK AMS56_RS11150 PF01888 CbiD AMS56_RS11155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS56_RS11160 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMS56_RS11160 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMS56_RS11165 PF02570 Precorrin-8X methylmutase AMS56_RS11170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS56_RS11175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS56_RS11180 PF02839 Carbohydrate binding domain AMS56_RS11190 PF02230 Phospholipase/Carboxylesterase AMS56_RS11200 PF07728 AAA domain (dynein-related subfamily) AMS56_RS11200 PF17863 AAA lid domain AMS56_RS11200 PF13519 von Willebrand factor type A domain AMS56_RS11210 PF02514 CobN/Magnesium Chelatase AMS56_RS11215 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMS56_RS11215 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMS56_RS11220 PF03824 High-affinity nickel-transport protein AMS56_RS11225 PF01890 Cobalamin synthesis G C-terminus AMS56_RS11230 PF12557 Cob(I)alamin adenosyltransferase N terminal AMS56_RS11230 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMS56_RS11235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMS56_RS11235 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMS56_RS11245 PF00551 Formyl transferase AMS56_RS11250 PF07715 TonB-dependent Receptor Plug Domain AMS56_RS11250 PF00593 TonB dependent receptor AMS56_RS11255 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMS56_RS11260 PF00668 Condensation domain AMS56_RS11260 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS11260 PF00501 AMP-binding enzyme AMS56_RS11260 PF00550 Phosphopantetheine attachment site AMS56_RS11265 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS11265 PF00550 Phosphopantetheine attachment site AMS56_RS11265 PF00668 Condensation domain AMS56_RS11265 PF00501 AMP-binding enzyme AMS56_RS11270 PF00664 ABC transporter transmembrane region AMS56_RS11270 PF00005 ABC transporter AMS56_RS11280 PF01497 Periplasmic binding protein AMS56_RS11290 PF01032 FecCD transport family AMS56_RS11295 PF00005 ABC transporter AMS56_RS11300 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMS56_RS11305 PF03621 MbtH-like protein AMS56_RS11330 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMS56_RS11330 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMS56_RS11335 PF08240 Alcohol dehydrogenase GroES-like domain AMS56_RS11335 PF00107 Zinc-binding dehydrogenase AMS56_RS11340 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS11345 PF00005 ABC transporter AMS56_RS11350 PF13407 Periplasmic binding protein domain AMS56_RS11370 PF00664 ABC transporter transmembrane region AMS56_RS11370 PF00005 ABC transporter AMS56_RS11370 PF08021 Siderophore-interacting FAD-binding domain AMS56_RS11370 PF04954 Siderophore-interacting protein AMS56_RS11380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AMS56_RS11380 PF02753 Pili assembly chaperone PapD, C-terminal domain AMS56_RS11385 PF00577 Outer membrane usher protein AMS56_RS11385 PF13954 PapC N-terminal domain AMS56_RS11385 PF13953 PapC C-terminal domain AMS56_RS11390 PF00419 Fimbrial protein AMS56_RS11395 PF02321 Outer membrane efflux protein AMS56_RS11400 PF00873 AcrB/AcrD/AcrF family AMS56_RS11405 PF00529 HlyD membrane-fusion protein of T1SS AMS56_RS11405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS11410 PF00440 Bacterial regulatory proteins, tetR family AMS56_RS11410 PF08361 MAATS-type transcriptional repressor, C-terminal region AMS56_RS11415 PF01551 Peptidase family M23 AMS56_RS11415 PF01476 LysM domain AMS56_RS11415 PF08525 Opacity-associated protein A N-terminal motif AMS56_RS11420 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS11425 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS11435 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS56_RS11465 PF00437 Type II/IV secretion system protein AMS56_RS11480 PF00263 Bacterial type II and III secretion system protein AMS56_RS11480 PF04972 BON domain AMS56_RS11480 PF13629 Pilus formation protein N terminal region AMS56_RS11500 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS11505 PF00005 ABC transporter AMS56_RS11520 PF00083 Sugar (and other) transporter AMS56_RS11525 PF04293 SpoVR like protein AMS56_RS11530 PF04285 Protein of unknown function (DUF444) AMS56_RS11535 PF08298 PrkA AAA domain AMS56_RS11535 PF06798 PrkA serine protein kinase C-terminal domain AMS56_RS11540 PF00672 HAMP domain AMS56_RS11540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS11540 PF02203 Tar ligand binding domain homologue AMS56_RS11545 PF00294 pfkB family carbohydrate kinase AMS56_RS11550 PF00356 Bacterial regulatory proteins, lacI family AMS56_RS11555 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS11560 PF00005 ABC transporter AMS56_RS11565 PF13407 Periplasmic binding protein domain AMS56_RS11570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS11570 PF03466 LysR substrate binding domain AMS56_RS11575 PF00005 ABC transporter AMS56_RS11575 PF12857 TOBE-like domain AMS56_RS11580 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS11585 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS11595 PF00717 Peptidase S24-like AMS56_RS11595 PF01726 LexA DNA binding domain AMS56_RS11615 PF00005 ABC transporter AMS56_RS11620 PF01061 ABC-2 type transporter AMS56_RS11630 PF03773 Predicted permease AMS56_RS11635 PF00248 Aldo/keto reductase family AMS56_RS11645 PF01638 HxlR-like helix-turn-helix AMS56_RS11660 PF00375 Sodium:dicarboxylate symporter family AMS56_RS11665 PF01207 Dihydrouridine synthase (Dus) AMS56_RS11685 PF03459 TOBE domain AMS56_RS11690 PF00005 ABC transporter AMS56_RS11695 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS11700 PF00296 Luciferase-like monooxygenase AMS56_RS11710 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS11715 PF00893 Small Multidrug Resistance protein AMS56_RS11720 PF03928 Haem-degrading AMS56_RS11730 PF00293 NUDIX domain AMS56_RS11730 PF09297 NADH pyrophosphatase zinc ribbon domain AMS56_RS11735 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMS56_RS11740 PF04376 Arginine-tRNA-protein transferase, N terminus AMS56_RS11740 PF04377 Arginine-tRNA-protein transferase, C terminus AMS56_RS11745 PF01180 Dihydroorotate dehydrogenase AMS56_RS11750 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS56_RS11755 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS11760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMS56_RS11760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMS56_RS11765 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS11765 PF07729 FCD domain AMS56_RS11770 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMS56_RS11775 PF01510 N-acetylmuramoyl-L-alanine amidase AMS56_RS11785 PF00588 SpoU rRNA Methylase family AMS56_RS11785 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMS56_RS11790 PF08461 Ribonuclease R winged-helix domain AMS56_RS11790 PF00773 RNB domain AMS56_RS11790 PF08206 Ribonuclease B OB domain AMS56_RS11790 PF00575 S1 RNA binding domain AMS56_RS11790 PF17876 Cold shock domain AMS56_RS11805 PF02203 Tar ligand binding domain homologue AMS56_RS11805 PF00672 HAMP domain AMS56_RS11805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS11810 PF04185 Phosphoesterase family AMS56_RS11815 PF02371 Transposase IS116/IS110/IS902 family AMS56_RS11815 PF01548 Transposase AMS56_RS11825 PF00916 Sulfate permease family AMS56_RS11825 PF01740 STAS domain AMS56_RS11835 PF00117 Glutamine amidotransferase class-I AMS56_RS11835 PF13302 Acetyltransferase (GNAT) domain AMS56_RS11835 PF00958 GMP synthase C terminal domain AMS56_RS11835 PF13673 Acetyltransferase (GNAT) domain AMS56_RS11835 PF03352 Methyladenine glycosylase AMS56_RS11845 PF07690 Major Facilitator Superfamily AMS56_RS11850 PF00440 Bacterial regulatory proteins, tetR family AMS56_RS11855 PF00501 AMP-binding enzyme AMS56_RS11855 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS11875 PF17209 Hfq protein AMS56_RS11885 PF02954 Bacterial regulatory protein, Fis family AMS56_RS11885 PF00158 Sigma-54 interaction domain AMS56_RS11885 PF00072 Response regulator receiver domain AMS56_RS11915 PF00437 Type II/IV secretion system protein AMS56_RS11925 PF13629 Pilus formation protein N terminal region AMS56_RS11925 PF04972 BON domain AMS56_RS11925 PF00263 Bacterial type II and III secretion system protein AMS56_RS11980 PF03969 AFG1-like ATPase AMS56_RS11985 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS56_RS11985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMS56_RS11990 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMS56_RS11990 PF00364 Biotin-requiring enzyme AMS56_RS11990 PF02817 e3 binding domain AMS56_RS11995 PF16870 2-oxoglutarate dehydrogenase C-terminal AMS56_RS11995 PF02779 Transketolase, pyrimidine binding domain AMS56_RS11995 PF16078 2-oxoglutarate dehydrogenase N-terminus AMS56_RS11995 PF00676 Dehydrogenase E1 component AMS56_RS12000 PF03144 Elongation factor Tu domain 2 AMS56_RS12000 PF00679 Elongation factor G C-terminus AMS56_RS12000 PF00009 Elongation factor Tu GTP binding domain AMS56_RS12005 PF01047 MarR family AMS56_RS12010 PF02321 Outer membrane efflux protein AMS56_RS12015 PF00529 HlyD membrane-fusion protein of T1SS AMS56_RS12015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS12020 PF07690 Major Facilitator Superfamily AMS56_RS12025 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMS56_RS12025 PF09157 Pseudouridine synthase II TruB, C-terminal AMS56_RS12025 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMS56_RS12030 PF02033 Ribosome-binding factor A AMS56_RS12035 PF08364 Bacterial translation initiation factor IF-2 associated region AMS56_RS12035 PF11987 Translation-initiation factor 2 AMS56_RS12035 PF00009 Elongation factor Tu GTP binding domain AMS56_RS12035 PF04760 Translation initiation factor IF-2, N-terminal region AMS56_RS12040 PF13184 NusA-like KH domain AMS56_RS12040 PF08529 NusA N-terminal domain AMS56_RS12045 PF02576 RimP N-terminal domain AMS56_RS12045 PF17384 RimP C-terminal SH3 domain AMS56_RS12050 PF00849 RNA pseudouridylate synthase AMS56_RS12050 PF01479 S4 domain AMS56_RS12055 PF04079 Segregation and condensation complex subunit ScpB AMS56_RS12060 PF03466 LysR substrate binding domain AMS56_RS12060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS12100 PF06804 NlpB/DapX lipoprotein AMS56_RS12120 PF01757 Acyltransferase family AMS56_RS12135 PF00216 Bacterial DNA-binding protein AMS56_RS12140 PF03147 Ferredoxin-fold anticodon binding domain AMS56_RS12140 PF01588 Putative tRNA binding domain AMS56_RS12140 PF03484 tRNA synthetase B5 domain AMS56_RS12140 PF03483 B3/4 domain AMS56_RS12140 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMS56_RS12145 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMS56_RS12145 PF01409 tRNA synthetases class II core domain (F) AMS56_RS12150 PF00453 Ribosomal protein L20 AMS56_RS12155 PF01632 Ribosomal protein L35 AMS56_RS12160 PF00707 Translation initiation factor IF-3, C-terminal domain AMS56_RS12160 PF05198 Translation initiation factor IF-3, N-terminal domain AMS56_RS12165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMS56_RS12165 PF03129 Anticodon binding domain AMS56_RS12165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMS56_RS12165 PF02824 TGS domain AMS56_RS12175 PF13291 ACT domain AMS56_RS12175 PF04607 Region found in RelA / SpoT proteins AMS56_RS12175 PF02824 TGS domain AMS56_RS12180 PF01042 Endoribonuclease L-PSP AMS56_RS12185 PF12146 Serine aminopeptidase, S33 AMS56_RS12195 PF03466 LysR substrate binding domain AMS56_RS12195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS12215 PF01144 Coenzyme A transferase AMS56_RS12220 PF01144 Coenzyme A transferase AMS56_RS12260 PF13276 HTH-like domain AMS56_RS12260 PF00665 Integrase core domain AMS56_RS12260 PF13333 Integrase core domain AMS56_RS12265 PF01264 Chorismate synthase AMS56_RS12275 PF07690 Major Facilitator Superfamily AMS56_RS12290 PF03631 Virulence factor BrkB AMS56_RS12295 PF03358 NADPH-dependent FMN reductase AMS56_RS12305 PF02913 FAD linked oxidases, C-terminal domain AMS56_RS12305 PF01565 FAD binding domain AMS56_RS12320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS12320 PF03466 LysR substrate binding domain AMS56_RS12325 PF02321 Outer membrane efflux protein AMS56_RS12330 PF04632 Fusaric acid resistance protein family AMS56_RS12340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS12345 PF02203 Tar ligand binding domain homologue AMS56_RS12345 PF00672 HAMP domain AMS56_RS12345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS12350 PF07690 Major Facilitator Superfamily AMS56_RS12355 PF01048 Phosphorylase superfamily AMS56_RS12360 PF00580 UvrD/REP helicase N-terminal domain AMS56_RS12360 PF13361 UvrD-like helicase C-terminal domain AMS56_RS12365 PF08264 Anticodon-binding domain of tRNA AMS56_RS12365 PF10458 Valyl tRNA synthetase tRNA binding arm AMS56_RS12365 PF00133 tRNA synthetases class I (I, L, M and V) AMS56_RS12370 PF00483 Nucleotidyl transferase AMS56_RS12380 PF00672 HAMP domain AMS56_RS12380 PF14827 Double sensory domain of two-component sensor kinase AMS56_RS12380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS12380 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS12380 PF13426 PAS domain AMS56_RS12390 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS12390 PF00072 Response regulator receiver domain AMS56_RS12400 PF01206 Sulfurtransferase TusA AMS56_RS12405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMS56_RS12405 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMS56_RS12410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMS56_RS12410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMS56_RS12415 PF01418 Helix-turn-helix domain, rpiR family AMS56_RS12415 PF01380 SIS domain AMS56_RS12425 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS12430 PF00005 ABC transporter AMS56_RS12435 PF00294 pfkB family carbohydrate kinase AMS56_RS12440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS56_RS12440 PF00205 Thiamine pyrophosphate enzyme, central domain AMS56_RS12440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS56_RS12445 PF01261 Xylose isomerase-like TIM barrel AMS56_RS12450 PF04962 KduI/IolB family AMS56_RS12455 PF00005 ABC transporter AMS56_RS12460 PF00005 ABC transporter AMS56_RS12460 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMS56_RS12465 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS12470 PF03061 Thioesterase superfamily AMS56_RS12475 PF00465 Iron-containing alcohol dehydrogenase AMS56_RS12480 PF01906 Putative heavy-metal-binding AMS56_RS12485 PF00293 NUDIX domain AMS56_RS12485 PF09297 NADH pyrophosphatase zinc ribbon domain AMS56_RS12495 PF13180 PDZ domain AMS56_RS12505 PF06779 Uncharacterised MFS-type transporter YbfB AMS56_RS12510 PF03466 LysR substrate binding domain AMS56_RS12510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS12515 PF02272 DHHA1 domain AMS56_RS12515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMS56_RS12515 PF01411 tRNA synthetases class II (A) AMS56_RS12520 PF02515 CoA-transferase family III AMS56_RS12530 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMS56_RS12530 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMS56_RS12535 PF00293 NUDIX domain AMS56_RS12545 PF00933 Glycosyl hydrolase family 3 N terminal domain AMS56_RS12555 PF00034 Cytochrome c AMS56_RS12555 PF03150 Di-haem cytochrome c peroxidase AMS56_RS12560 PF04185 Phosphoesterase family AMS56_RS12560 PF05506 Domain of unknown function (DUF756) AMS56_RS12565 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMS56_RS12565 PF07055 Enoyl reductase FAD binding domain AMS56_RS12565 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMS56_RS12570 PF00529 HlyD membrane-fusion protein of T1SS AMS56_RS12570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS12580 PF07690 Major Facilitator Superfamily AMS56_RS12585 PF02321 Outer membrane efflux protein AMS56_RS12590 PF00196 Bacterial regulatory proteins, luxR family AMS56_RS12590 PF00072 Response regulator receiver domain AMS56_RS12595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS12595 PF00072 Response regulator receiver domain AMS56_RS12595 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMS56_RS12595 PF01627 Hpt domain AMS56_RS12595 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS12595 PF00672 HAMP domain AMS56_RS12630 PF03466 LysR substrate binding domain AMS56_RS12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS12635 PF07690 Major Facilitator Superfamily AMS56_RS12640 PF04909 Amidohydrolase AMS56_RS12675 PF04717 Type VI secretion system, phage-baseplate injector AMS56_RS12705 PF13296 Putative type VI secretion system Rhs element Vgr AMS56_RS12705 PF04717 Type VI secretion system, phage-baseplate injector AMS56_RS12705 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AMS56_RS12730 PF04717 Type VI secretion system, phage-baseplate injector AMS56_RS12790 PF01389 OmpA-like transmembrane domain AMS56_RS12790 PF00691 OmpA family AMS56_RS12795 PF05662 Coiled stalk of trimeric autotransporter adhesin AMS56_RS12795 PF05658 Head domain of trimeric autotransporter adhesin AMS56_RS12795 PF03895 YadA-like membrane anchor domain AMS56_RS12805 PF00072 Response regulator receiver domain AMS56_RS12805 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS12820 PF05666 Fels-1 Prophage Protein-like AMS56_RS12830 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS12830 PF00072 Response regulator receiver domain AMS56_RS12835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS12835 PF03466 LysR substrate binding domain AMS56_RS12860 PF10503 Esterase PHB depolymerase AMS56_RS12870 PF11896 Domain of unknown function (DUF3416) AMS56_RS12870 PF00128 Alpha amylase, catalytic domain AMS56_RS12875 PF00128 Alpha amylase, catalytic domain AMS56_RS12875 PF16657 Maltogenic Amylase, C-terminal domain AMS56_RS12880 PF02806 Alpha amylase, C-terminal all-beta domain AMS56_RS12880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMS56_RS12885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMS56_RS12885 PF00128 Alpha amylase, catalytic domain AMS56_RS12890 PF11941 Domain of unknown function (DUF3459) AMS56_RS12890 PF00128 Alpha amylase, catalytic domain AMS56_RS12895 PF02446 4-alpha-glucanotransferase AMS56_RS12900 PF00128 Alpha amylase, catalytic domain AMS56_RS12915 PF00155 Aminotransferase class I and II AMS56_RS12915 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS12920 PF04072 Leucine carboxyl methyltransferase AMS56_RS12960 PF00589 Phage integrase family AMS56_RS12975 PF01527 Transposase AMS56_RS12980 PF00665 Integrase core domain AMS56_RS12980 PF13276 HTH-like domain AMS56_RS13025 PF02673 Bacitracin resistance protein BacA AMS56_RS13040 PF01551 Peptidase family M23 AMS56_RS13040 PF01476 LysM domain AMS56_RS13045 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS13045 PF00501 AMP-binding enzyme AMS56_RS13055 PF01554 MatE AMS56_RS13115 PF02541 Ppx/GppA phosphatase family AMS56_RS13120 PF13090 Polyphosphate kinase C-terminal domain 2 AMS56_RS13120 PF17941 Polyphosphate kinase C-terminal domain 1 AMS56_RS13120 PF13089 Polyphosphate kinase N-terminal domain AMS56_RS13120 PF02503 Polyphosphate kinase middle domain AMS56_RS13130 PF11808 Phosphate regulon sensor protein PhoR AMS56_RS13130 PF00989 PAS fold AMS56_RS13130 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS13130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS13135 PF00072 Response regulator receiver domain AMS56_RS13135 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS13140 PF01895 PhoU domain AMS56_RS13145 PF00005 ABC transporter AMS56_RS13150 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS13155 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS13160 PF12849 PBP superfamily domain AMS56_RS13165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMS56_RS13165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMS56_RS13165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMS56_RS13165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMS56_RS13170 PF00809 Pterin binding enzyme AMS56_RS13175 PF00004 ATPase family associated with various cellular activities (AAA) AMS56_RS13175 PF17862 AAA+ lid domain AMS56_RS13175 PF01434 Peptidase family M41 AMS56_RS13175 PF06480 FtsH Extracellular AMS56_RS13180 PF01728 FtsJ-like methyltransferase AMS56_RS13185 PF01985 CRS1 / YhbY (CRM) domain AMS56_RS13195 PF01272 Transcription elongation factor, GreA/GreB, C-term AMS56_RS13195 PF03449 Transcription elongation factor, N-terminal AMS56_RS13200 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMS56_RS13200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMS56_RS13200 PF02142 MGS-like domain AMS56_RS13205 PF01810 LysE type translocator AMS56_RS13210 PF00117 Glutamine amidotransferase class-I AMS56_RS13210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMS56_RS13220 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMS56_RS13220 PF12833 Helix-turn-helix domain AMS56_RS13240 PF01476 LysM domain AMS56_RS13240 PF01464 Transglycosylase SLT domain AMS56_RS13245 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMS56_RS13245 PF00753 Metallo-beta-lactamase superfamily AMS56_RS13250 PF08241 Methyltransferase domain AMS56_RS13255 PF00075 RNase H AMS56_RS13260 PF00929 Exonuclease AMS56_RS13265 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMS56_RS13270 PF08946 Osmosensory transporter coiled coil AMS56_RS13270 PF00083 Sugar (and other) transporter AMS56_RS13290 PF13091 PLD-like domain AMS56_RS13295 PF00698 Acyl transferase domain AMS56_RS13300 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AMS56_RS13305 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AMS56_RS13315 PF01039 Carboxyl transferase domain AMS56_RS13320 PF06857 Malonate decarboxylase delta subunit (MdcD) AMS56_RS13325 PF16957 Malonate decarboxylase, alpha subunit, transporter AMS56_RS13340 PF03466 LysR substrate binding domain AMS56_RS13340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS13345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMS56_RS13345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMS56_RS13350 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AMS56_RS13350 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AMS56_RS13370 PF00011 Hsp20/alpha crystallin family AMS56_RS13385 PF00155 Aminotransferase class I and II AMS56_RS13385 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS13415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS13415 PF03466 LysR substrate binding domain AMS56_RS13425 PF03055 Retinal pigment epithelial membrane protein AMS56_RS13430 PF01380 SIS domain AMS56_RS13435 PF01037 Lrp/AsnC ligand binding domain AMS56_RS13440 PF00155 Aminotransferase class I and II AMS56_RS13440 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS13460 PF00990 Diguanylate cyclase, GGDEF domain AMS56_RS13460 PF00072 Response regulator receiver domain AMS56_RS13480 PF00589 Phage integrase family AMS56_RS13480 PF13356 Arm DNA-binding domain AMS56_RS13515 PF01695 IstB-like ATP binding protein AMS56_RS13560 PF01527 Transposase AMS56_RS13565 PF13683 Integrase core domain AMS56_RS13565 PF13276 HTH-like domain AMS56_RS13585 PF00356 Bacterial regulatory proteins, lacI family AMS56_RS13595 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS13610 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS13615 PF00005 ABC transporter AMS56_RS13615 PF08402 TOBE domain AMS56_RS13620 PF00149 Calcineurin-like phosphoesterase AMS56_RS13640 PF07690 Major Facilitator Superfamily AMS56_RS13645 PF00892 EamA-like transporter family AMS56_RS13655 PF00174 Oxidoreductase molybdopterin binding domain AMS56_RS13660 PF01292 Prokaryotic cytochrome b561 AMS56_RS13675 PF13667 ThiC-associated domain AMS56_RS13675 PF01964 Radical SAM ThiC family AMS56_RS13700 PF00563 EAL domain AMS56_RS13700 PF12792 CSS motif domain associated with EAL AMS56_RS13705 PF00472 RF-1 domain AMS56_RS13710 PF13538 UvrD-like helicase C-terminal domain AMS56_RS13715 PF12705 PD-(D/E)XK nuclease superfamily AMS56_RS13715 PF00580 UvrD/REP helicase N-terminal domain AMS56_RS13715 PF13361 UvrD-like helicase C-terminal domain AMS56_RS13720 PF17946 RecC C-terminal domain AMS56_RS13730 PF12805 FUSC-like inner membrane protein yccS AMS56_RS13735 PF00324 Amino acid permease AMS56_RS13745 PF13416 Bacterial extracellular solute-binding protein AMS56_RS13750 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS13755 PF00005 ABC transporter AMS56_RS13755 PF08402 TOBE domain AMS56_RS13760 PF01037 Lrp/AsnC ligand binding domain AMS56_RS13760 PF13404 AsnC-type helix-turn-helix domain AMS56_RS13775 PF02082 Transcriptional regulator AMS56_RS13795 PF13533 Biotin-lipoyl like AMS56_RS13800 PF00873 AcrB/AcrD/AcrF family AMS56_RS13805 PF00873 AcrB/AcrD/AcrF family AMS56_RS13820 PF00578 AhpC/TSA family AMS56_RS13825 PF03707 Bacterial signalling protein N terminal repeat AMS56_RS13825 PF00563 EAL domain AMS56_RS13825 PF00990 Diguanylate cyclase, GGDEF domain AMS56_RS13835 PF00034 Cytochrome c AMS56_RS13840 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMS56_RS13855 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMS56_RS13855 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMS56_RS13855 PF00034 Cytochrome c AMS56_RS13860 PF00034 Cytochrome c AMS56_RS13875 PF17200 Single Cache domain 2 AMS56_RS13875 PF07730 Histidine kinase AMS56_RS13880 PF09084 NMT1/THI5 like AMS56_RS13890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS56_RS13890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS56_RS13890 PF01842 ACT domain AMS56_RS13895 PF02311 AraC-like ligand binding domain AMS56_RS13895 PF12833 Helix-turn-helix domain AMS56_RS13910 PF01321 Creatinase/Prolidase N-terminal domain AMS56_RS13910 PF00557 Metallopeptidase family M24 AMS56_RS13945 PF00196 Bacterial regulatory proteins, luxR family AMS56_RS13945 PF00072 Response regulator receiver domain AMS56_RS13960 PF18027 Cytosolic carboxypeptidase N-terminal domain AMS56_RS13960 PF00246 Zinc carboxypeptidase AMS56_RS13965 PF03883 Peroxide stress protein YaaA AMS56_RS13975 PF00155 Aminotransferase class I and II AMS56_RS13985 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS13990 PF00300 Histidine phosphatase superfamily (branch 1) AMS56_RS14000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS14000 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS14000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS14010 PF01575 MaoC like domain AMS56_RS14015 PF00171 Aldehyde dehydrogenase family AMS56_RS14015 PF01575 MaoC like domain AMS56_RS14020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS14020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS14020 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS14025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS14025 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS14025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS14035 PF00293 NUDIX domain AMS56_RS14045 PF00361 Proton-conducting membrane transporter AMS56_RS14050 PF00361 Proton-conducting membrane transporter AMS56_RS14050 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMS56_RS14055 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMS56_RS14055 PF00361 Proton-conducting membrane transporter AMS56_RS14060 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMS56_RS14065 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMS56_RS14070 PF12838 4Fe-4S dicluster domain AMS56_RS14075 PF00146 NADH dehydrogenase AMS56_RS14080 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMS56_RS14080 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMS56_RS14080 PF00384 Molybdopterin oxidoreductase AMS56_RS14085 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMS56_RS14085 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMS56_RS14085 PF10531 SLBB domain AMS56_RS14095 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMS56_RS14100 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMS56_RS14105 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMS56_RS14110 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMS56_RS14120 PF03840 Preprotein translocase SecG subunit AMS56_RS14125 PF00121 Triosephosphate isomerase AMS56_RS14130 PF00698 Acyl transferase domain AMS56_RS14130 PF08659 KR domain AMS56_RS14130 PF08240 Alcohol dehydrogenase GroES-like domain AMS56_RS14130 PF00550 Phosphopantetheine attachment site AMS56_RS14130 PF14765 Polyketide synthase dehydratase AMS56_RS14135 PF00575 S1 RNA binding domain AMS56_RS14135 PF00013 KH domain AMS56_RS14135 PF01138 3' exoribonuclease family, domain 1 AMS56_RS14135 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMS56_RS14135 PF03725 3' exoribonuclease family, domain 2 AMS56_RS14140 PF00312 Ribosomal protein S15 AMS56_RS14145 PF13458 Periplasmic binding protein AMS56_RS14160 PF00484 Carbonic anhydrase AMS56_RS14165 PF00916 Sulfate permease family AMS56_RS14165 PF01740 STAS domain AMS56_RS14170 PF00682 HMGL-like AMS56_RS14170 PF08502 LeuA allosteric (dimerisation) domain AMS56_RS14175 PF01066 CDP-alcohol phosphatidyltransferase AMS56_RS14180 PF02666 Phosphatidylserine decarboxylase AMS56_RS14185 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMS56_RS14185 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMS56_RS14190 PF10369 Small subunit of acetolactate synthase AMS56_RS14195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS56_RS14195 PF00205 Thiamine pyrophosphate enzyme, central domain AMS56_RS14195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS56_RS14225 PF00534 Glycosyl transferases group 1 AMS56_RS14225 PF13439 Glycosyltransferase Family 4 AMS56_RS14230 PF01219 Prokaryotic diacylglycerol kinase AMS56_RS14235 PF08360 QacR-like protein, C-terminal region AMS56_RS14235 PF00440 Bacterial regulatory proteins, tetR family AMS56_RS14240 PF03641 Possible lysine decarboxylase AMS56_RS14250 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AMS56_RS14255 PF07690 Major Facilitator Superfamily AMS56_RS14260 PF01425 Amidase AMS56_RS14270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMS56_RS14270 PF02272 DHHA1 domain AMS56_RS14270 PF01411 tRNA synthetases class II (A) AMS56_RS14290 PF00893 Small Multidrug Resistance protein AMS56_RS14300 PF02371 Transposase IS116/IS110/IS902 family AMS56_RS14300 PF01548 Transposase AMS56_RS14305 PF00072 Response regulator receiver domain AMS56_RS14305 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS14310 PF13492 GAF domain AMS56_RS14310 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS14310 PF13493 Domain of unknown function (DUF4118) AMS56_RS14310 PF02702 Osmosensitive K+ channel His kinase sensor domain AMS56_RS14310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS14320 PF02669 K+-transporting ATPase, c chain AMS56_RS14330 PF03814 Potassium-transporting ATPase A subunit AMS56_RS14340 PF08240 Alcohol dehydrogenase GroES-like domain AMS56_RS14340 PF00107 Zinc-binding dehydrogenase AMS56_RS14345 PF02142 MGS-like domain AMS56_RS14360 PF01709 Transcriptional regulator AMS56_RS14365 PF02843 Phosphoribosylglycinamide synthetase, C domain AMS56_RS14365 PF02844 Phosphoribosylglycinamide synthetase, N domain AMS56_RS14365 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMS56_RS14370 PF01218 Coproporphyrinogen III oxidase AMS56_RS14375 PF01467 Cytidylyltransferase-like AMS56_RS14385 PF02590 Predicted SPOUT methyltransferase AMS56_RS14390 PF02545 Maf-like protein AMS56_RS14395 PF00575 S1 RNA binding domain AMS56_RS14395 PF10150 Ribonuclease E/G family AMS56_RS14400 PF00860 Permease family AMS56_RS14430 PF04542 Sigma-70 region 2 AMS56_RS14430 PF08281 Sigma-70, region 4 AMS56_RS14430 PF12680 SnoaL-like domain AMS56_RS14435 PF02627 Carboxymuconolactone decarboxylase family AMS56_RS14445 PF07690 Major Facilitator Superfamily AMS56_RS14460 PF00535 Glycosyl transferase family 2 AMS56_RS14465 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMS56_RS14470 PF13439 Glycosyltransferase Family 4 AMS56_RS14470 PF00534 Glycosyl transferases group 1 AMS56_RS14485 PF13439 Glycosyltransferase Family 4 AMS56_RS14485 PF00534 Glycosyl transferases group 1 AMS56_RS14490 PF00664 ABC transporter transmembrane region AMS56_RS14490 PF00005 ABC transporter AMS56_RS14495 PF14579 Helix-hairpin-helix motif AMS56_RS14495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMS56_RS14495 PF01336 OB-fold nucleic acid binding domain AMS56_RS14495 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMS56_RS14495 PF02811 PHP domain AMS56_RS14505 PF17773 UPF0176 acylphosphatase like domain AMS56_RS14510 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMS56_RS14515 PF00270 DEAD/DEAH box helicase AMS56_RS14515 PF00271 Helicase conserved C-terminal domain AMS56_RS14520 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme AMS56_RS14530 PF02222 ATP-grasp domain AMS56_RS14530 PF01370 NAD dependent epimerase/dehydratase family AMS56_RS14545 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMS56_RS14545 PF17854 FtsK alpha domain AMS56_RS14545 PF09397 Ftsk gamma domain AMS56_RS14545 PF01580 FtsK/SpoIIIE family AMS56_RS14550 PF10282 Lactonase, 7-bladed beta-propeller AMS56_RS14555 PF00723 Glycosyl hydrolases family 15 AMS56_RS14565 PF17938 Tetracyclin repressor-like, C-terminal domain AMS56_RS14565 PF00440 Bacterial regulatory proteins, tetR family AMS56_RS14570 PF04060 Putative Fe-S cluster AMS56_RS14575 PF00730 HhH-GPD superfamily base excision DNA repair protein AMS56_RS14575 PF00633 Helix-hairpin-helix motif AMS56_RS14575 PF10576 Iron-sulfur binding domain of endonuclease III AMS56_RS14580 PF00892 EamA-like transporter family AMS56_RS14590 PF00034 Cytochrome c AMS56_RS14595 PF00034 Cytochrome c AMS56_RS14600 PF10431 C-terminal, D2-small domain, of ClpB protein AMS56_RS14600 PF17871 AAA lid domain AMS56_RS14600 PF02861 Clp amino terminal domain, pathogenicity island component AMS56_RS14600 PF00004 ATPase family associated with various cellular activities (AAA) AMS56_RS14600 PF07724 AAA domain (Cdc48 subfamily) AMS56_RS14610 PF03594 Benzoate membrane transport protein AMS56_RS14615 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMS56_RS14625 PF06983 3-demethylubiquinone-9 3-methyltransferase AMS56_RS14630 PF00474 Sodium:solute symporter family AMS56_RS14640 PF13847 Methyltransferase domain AMS56_RS14650 PF04345 Chorismate lyase AMS56_RS14655 PF00183 Hsp90 protein AMS56_RS14655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS14660 PF00155 Aminotransferase class I and II AMS56_RS14670 PF00892 EamA-like transporter family AMS56_RS14675 PF00155 Aminotransferase class I and II AMS56_RS14685 PF02567 Phenazine biosynthesis-like protein AMS56_RS14690 PF00990 Diguanylate cyclase, GGDEF domain AMS56_RS14690 PF03707 Bacterial signalling protein N terminal repeat AMS56_RS14690 PF00563 EAL domain AMS56_RS14700 PF00850 Histone deacetylase domain AMS56_RS14705 PF01546 Peptidase family M20/M25/M40 AMS56_RS14705 PF07687 Peptidase dimerisation domain AMS56_RS14710 PF07690 Major Facilitator Superfamily AMS56_RS14710 PF00083 Sugar (and other) transporter AMS56_RS14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS14715 PF03466 LysR substrate binding domain AMS56_RS14725 PF03466 LysR substrate binding domain AMS56_RS14725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS14740 PF00521 DNA gyrase/topoisomerase IV, subunit A AMS56_RS14745 PF00204 DNA gyrase B AMS56_RS14745 PF00986 DNA gyrase B subunit, carboxyl terminus AMS56_RS14745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS14745 PF01751 Toprim domain AMS56_RS14750 PF16326 ABC transporter C-terminal domain AMS56_RS14750 PF00005 ABC transporter AMS56_RS14750 PF12848 ABC transporter AMS56_RS14760 PF00301 Rubredoxin AMS56_RS14780 PF01176 Translation initiation factor 1A / IF-1 AMS56_RS14815 PF00768 D-alanyl-D-alanine carboxypeptidase AMS56_RS14820 PF03974 Ecotin AMS56_RS14840 PF01161 Phosphatidylethanolamine-binding protein AMS56_RS14845 PF07690 Major Facilitator Superfamily AMS56_RS14865 PF00982 Glycosyltransferase family 20 AMS56_RS14885 PF00005 ABC transporter AMS56_RS14890 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS14900 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS14900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS14900 PF00672 HAMP domain AMS56_RS14905 PF00072 Response regulator receiver domain AMS56_RS14905 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS14915 PF17954 Quercetinase C-terminal cupin domain AMS56_RS14915 PF02678 Pirin AMS56_RS14920 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS56_RS14925 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS14930 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS14935 PF00005 ABC transporter AMS56_RS14940 PF13609 Gram-negative porin AMS56_RS14945 PF00543 Nitrogen regulatory protein P-II AMS56_RS14950 PF02540 NAD synthase AMS56_RS14950 PF00795 Carbon-nitrogen hydrolase AMS56_RS14960 PF00933 Glycosyl hydrolase family 3 N terminal domain AMS56_RS14960 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMS56_RS14960 PF14310 Fibronectin type III-like domain AMS56_RS14970 PF01541 GIY-YIG catalytic domain AMS56_RS14975 PF00719 Inorganic pyrophosphatase AMS56_RS14980 PF00171 Aldehyde dehydrogenase family AMS56_RS14990 PF07690 Major Facilitator Superfamily AMS56_RS15000 PF02602 Uroporphyrinogen-III synthase HemD AMS56_RS15005 PF03900 Porphobilinogen deaminase, C-terminal domain AMS56_RS15005 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMS56_RS15015 PF00311 Phosphoenolpyruvate carboxylase AMS56_RS15020 PF08241 Methyltransferase domain AMS56_RS15050 PF00206 Lyase AMS56_RS15050 PF14698 Argininosuccinate lyase C-terminal AMS56_RS15055 PF13419 Haloacid dehalogenase-like hydrolase AMS56_RS15065 PF01276 Orn/Lys/Arg decarboxylase, major domain AMS56_RS15065 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AMS56_RS15065 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AMS56_RS15070 PF00692 dUTPase AMS56_RS15080 PF10609 NUBPL iron-transfer P-loop NTPase AMS56_RS15085 PF05736 OprF membrane domain AMS56_RS15085 PF00691 OmpA family AMS56_RS15090 PF09334 tRNA synthetases class I (M) AMS56_RS15090 PF01588 Putative tRNA binding domain AMS56_RS15095 PF16864 Dimerisation domain AMS56_RS15095 PF00891 O-methyltransferase domain AMS56_RS15105 PF04357 TamB, inner membrane protein subunit of TAM complex AMS56_RS15110 PF17243 POTRA domain TamA domain 1 AMS56_RS15110 PF07244 Surface antigen variable number repeat AMS56_RS15110 PF01103 Surface antigen AMS56_RS15120 PF02616 Segregation and condensation protein ScpA AMS56_RS15125 PF02569 Pantoate-beta-alanine ligase AMS56_RS15130 PF02261 Aspartate decarboxylase AMS56_RS15135 PF10609 NUBPL iron-transfer P-loop NTPase AMS56_RS15140 PF07681 DoxX AMS56_RS15145 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMS56_RS15145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMS56_RS15150 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMS56_RS15155 PF03186 CobD/Cbib protein AMS56_RS15155 PF17113 Regulatory signalling modulator protein AmpE AMS56_RS15160 PF00155 Aminotransferase class I and II AMS56_RS15165 PF01497 Periplasmic binding protein AMS56_RS15180 PF02654 Cobalamin-5-phosphate synthase AMS56_RS15185 PF02277 Phosphoribosyltransferase AMS56_RS15190 PF00005 ABC transporter AMS56_RS15195 PF01032 FecCD transport family AMS56_RS15200 PF07715 TonB-dependent Receptor Plug Domain AMS56_RS15200 PF00593 TonB dependent receptor AMS56_RS15210 PF05164 Cell division protein ZapA AMS56_RS15225 PF01790 Prolipoprotein diacylglyceryl transferase AMS56_RS15230 PF03466 LysR substrate binding domain AMS56_RS15230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS15235 PF00920 Dehydratase family AMS56_RS15240 PF00034 Cytochrome c AMS56_RS15250 PF04364 DNA polymerase III chi subunit, HolC AMS56_RS15255 PF02789 Cytosol aminopeptidase family, N-terminal domain AMS56_RS15255 PF00883 Cytosol aminopeptidase family, catalytic domain AMS56_RS15260 PF03739 Lipopolysaccharide export system permease LptF/LptG AMS56_RS15275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS56_RS15275 PF14824 Sirohaem biosynthesis protein central AMS56_RS15275 PF10414 Sirohaem synthase dimerisation region AMS56_RS15280 PF00009 Elongation factor Tu GTP binding domain AMS56_RS15285 PF01507 Phosphoadenosine phosphosulfate reductase family AMS56_RS15290 PF01507 Phosphoadenosine phosphosulfate reductase family AMS56_RS15305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS15305 PF03466 LysR substrate binding domain AMS56_RS15320 PF08671 Anti-repressor SinI AMS56_RS15320 PF01381 Helix-turn-helix AMS56_RS15325 PF00596 Class II Aldolase and Adducin N-terminal domain AMS56_RS15330 PF00701 Dihydrodipicolinate synthetase family AMS56_RS15335 PF03475 3-alpha domain AMS56_RS15335 PF03473 MOSC domain AMS56_RS15340 PF00561 alpha/beta hydrolase fold AMS56_RS15345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS15345 PF03466 LysR substrate binding domain AMS56_RS15350 PF03466 LysR substrate binding domain AMS56_RS15350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS15360 PF00849 RNA pseudouridylate synthase AMS56_RS15360 PF01479 S4 domain AMS56_RS15375 PF00970 Oxidoreductase FAD-binding domain AMS56_RS15375 PF00175 Oxidoreductase NAD-binding domain AMS56_RS15375 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS56_RS15380 PF00202 Aminotransferase class-III AMS56_RS15385 PF00583 Acetyltransferase (GNAT) family AMS56_RS15395 PF00005 ABC transporter AMS56_RS15400 PF00005 ABC transporter AMS56_RS15400 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMS56_RS15405 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS15405 PF11862 Domain of unknown function (DUF3382) AMS56_RS15410 PF02653 Branched-chain amino acid transport system / permease component AMS56_RS15425 PF02401 LytB protein AMS56_RS15430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMS56_RS15435 PF04002 RadC-like JAB domain AMS56_RS15440 PF00830 Ribosomal L28 family AMS56_RS15445 PF00471 Ribosomal protein L33 AMS56_RS15450 PF00890 FAD binding domain AMS56_RS15450 PF02910 Fumarate reductase flavoprotein C-term AMS56_RS15455 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMS56_RS15455 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMS56_RS15460 PF02445 Quinolinate synthetase A protein AMS56_RS15470 PF12795 Mechanosensitive ion channel porin domain AMS56_RS15470 PF00924 Mechanosensitive ion channel AMS56_RS15470 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMS56_RS15475 PF01189 16S rRNA methyltransferase RsmB/F AMS56_RS15475 PF01029 NusB family AMS56_RS15480 PF00551 Formyl transferase AMS56_RS15485 PF01687 Riboflavin kinase AMS56_RS15485 PF06574 FAD synthetase AMS56_RS15490 PF06827 Zinc finger found in FPG and IleRS AMS56_RS15490 PF00133 tRNA synthetases class I (I, L, M and V) AMS56_RS15490 PF08264 Anticodon-binding domain of tRNA AMS56_RS15495 PF01252 Signal peptidase (SPase) II AMS56_RS15500 PF04127 DNA / pantothenate metabolism flavoprotein AMS56_RS15500 PF02441 Flavoprotein AMS56_RS15505 PF00692 dUTPase AMS56_RS15520 PF00324 Amino acid permease AMS56_RS15525 PF17871 AAA lid domain AMS56_RS15525 PF02861 Clp amino terminal domain, pathogenicity island component AMS56_RS15525 PF00004 ATPase family associated with various cellular activities (AAA) AMS56_RS15525 PF10431 C-terminal, D2-small domain, of ClpB protein AMS56_RS15525 PF07724 AAA domain (Cdc48 subfamily) AMS56_RS15530 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMS56_RS15535 PF00313 'Cold-shock' DNA-binding domain AMS56_RS15540 PF07731 Multicopper oxidase AMS56_RS15540 PF07732 Multicopper oxidase AMS56_RS15545 PF00180 Isocitrate/isopropylmalate dehydrogenase AMS56_RS15550 PF00849 RNA pseudouridylate synthase AMS56_RS15560 PF00679 Elongation factor G C-terminus AMS56_RS15560 PF03764 Elongation factor G, domain IV AMS56_RS15560 PF00009 Elongation factor Tu GTP binding domain AMS56_RS15560 PF03144 Elongation factor Tu domain 2 AMS56_RS15560 PF14492 Elongation Factor G, domain II AMS56_RS15580 PF00248 Aldo/keto reductase family AMS56_RS15585 PF07702 UTRA domain AMS56_RS15585 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS15595 PF00285 Citrate synthase, C-terminal domain AMS56_RS15605 PF07690 Major Facilitator Superfamily AMS56_RS15650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMS56_RS15650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMS56_RS15655 PF02601 Exonuclease VII, large subunit AMS56_RS15655 PF13742 OB-fold nucleic acid binding domain AMS56_RS15660 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMS56_RS15665 PF03966 Trm112p-like protein AMS56_RS15670 PF02348 Cytidylyltransferase AMS56_RS15675 PF05191 Adenylate kinase, active site lid AMS56_RS15680 PF00106 short chain dehydrogenase AMS56_RS15685 PF13369 Transglutaminase-like superfamily AMS56_RS15690 PF03023 Lipid II flippase MurJ AMS56_RS15695 PF01649 Ribosomal protein S20 AMS56_RS15705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMS56_RS15705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMS56_RS15710 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMS56_RS15710 PF01565 FAD binding domain AMS56_RS15715 PF04461 Protein of unknown function (DUF520) AMS56_RS15720 PF02660 Glycerol-3-phosphate acyltransferase AMS56_RS15725 PF04073 Aminoacyl-tRNA editing domain AMS56_RS15730 PF00501 AMP-binding enzyme AMS56_RS15730 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS15735 PF02899 Phage integrase, N-terminal SAM-like domain AMS56_RS15735 PF00589 Phage integrase family AMS56_RS15745 PF08331 Domain of unknown function (DUF1730) AMS56_RS15750 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMS56_RS15755 PF01520 N-acetylmuramoyl-L-alanine amidase AMS56_RS15755 PF11741 AMIN domain AMS56_RS15760 PF00892 EamA-like transporter family AMS56_RS15765 PF02678 Pirin AMS56_RS15765 PF05726 Pirin C-terminal cupin domain AMS56_RS15770 PF00085 Thioredoxin AMS56_RS15775 PF00899 ThiF family AMS56_RS15780 PF01243 Pyridoxamine 5'-phosphate oxidase AMS56_RS15780 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMS56_RS15800 PF01625 Peptide methionine sulfoxide reductase AMS56_RS15810 PF01613 Flavin reductase like domain AMS56_RS15815 PF01037 Lrp/AsnC ligand binding domain AMS56_RS15820 PF04199 Putative cyclase AMS56_RS15825 PF00266 Aminotransferase class-V AMS56_RS15830 PF03301 Tryptophan 2,3-dioxygenase AMS56_RS15835 PF07690 Major Facilitator Superfamily AMS56_RS15850 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMS56_RS15850 PF02558 Ketopantoate reductase PanE/ApbA AMS56_RS15855 PF00171 Aldehyde dehydrogenase family AMS56_RS15860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS56_RS15860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS56_RS15860 PF00205 Thiamine pyrophosphate enzyme, central domain AMS56_RS15865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS15865 PF03466 LysR substrate binding domain AMS56_RS15870 PF08125 Mannitol dehydrogenase C-terminal domain AMS56_RS15870 PF01232 Mannitol dehydrogenase Rossmann domain AMS56_RS15875 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMS56_RS15875 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMS56_RS15880 PF04198 Putative sugar-binding domain AMS56_RS15885 PF07690 Major Facilitator Superfamily AMS56_RS15890 PF00144 Beta-lactamase AMS56_RS15895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS15895 PF03466 LysR substrate binding domain AMS56_RS15905 PF08402 TOBE domain AMS56_RS15905 PF00005 ABC transporter AMS56_RS15910 PF13419 Haloacid dehalogenase-like hydrolase AMS56_RS15915 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS15920 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS15930 PF08013 Tagatose 6 phosphate kinase AMS56_RS15935 PF00294 pfkB family carbohydrate kinase AMS56_RS15945 PF01475 Ferric uptake regulator family AMS56_RS15955 PF00005 ABC transporter AMS56_RS15960 PF00950 ABC 3 transport family AMS56_RS15965 PF00756 Putative esterase AMS56_RS15970 PF08240 Alcohol dehydrogenase GroES-like domain AMS56_RS15970 PF00107 Zinc-binding dehydrogenase AMS56_RS15975 PF12833 Helix-turn-helix domain AMS56_RS15975 PF01965 DJ-1/PfpI family AMS56_RS15980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMS56_RS15980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMS56_RS15985 PF00860 Permease family AMS56_RS15990 PF02321 Outer membrane efflux protein AMS56_RS15995 PF00873 AcrB/AcrD/AcrF family AMS56_RS16000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS16000 PF00529 HlyD membrane-fusion protein of T1SS AMS56_RS16005 PF00440 Bacterial regulatory proteins, tetR family AMS56_RS16005 PF08361 MAATS-type transcriptional repressor, C-terminal region AMS56_RS16025 PF13180 PDZ domain AMS56_RS16035 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS16035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS16040 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS16040 PF00072 Response regulator receiver domain AMS56_RS16045 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AMS56_RS16050 PF04116 Fatty acid hydroxylase superfamily AMS56_RS16060 PF01300 Telomere recombination AMS56_RS16060 PF03481 Putative GTP-binding controlling metal-binding AMS56_RS16065 PF02222 ATP-grasp domain AMS56_RS16065 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMS56_RS16070 PF00731 AIR carboxylase AMS56_RS16075 PF01259 SAICAR synthetase AMS56_RS16080 PF01116 Fructose-bisphosphate aldolase class-II AMS56_RS16085 PF00224 Pyruvate kinase, barrel domain AMS56_RS16085 PF02887 Pyruvate kinase, alpha/beta domain AMS56_RS16090 PF00162 Phosphoglycerate kinase AMS56_RS16105 PF01063 Amino-transferase class IV AMS56_RS16115 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMS56_RS16125 PF00561 alpha/beta hydrolase fold AMS56_RS16135 PF01435 Peptidase family M48 AMS56_RS16135 PF13181 Tetratricopeptide repeat AMS56_RS16140 PF01967 MoaC family AMS56_RS16155 PF11846 Virulence factor membrane-bound polymerase, C-terminal AMS56_RS16155 PF04932 O-Antigen ligase AMS56_RS16155 PF15864 Protein glycosylation ligase AMS56_RS16160 PF07963 Prokaryotic N-terminal methylation motif AMS56_RS16160 PF00114 Pilin (bacterial filament) AMS56_RS16165 PF03741 Integral membrane protein TerC family AMS56_RS16170 PF00549 CoA-ligase AMS56_RS16170 PF02629 CoA binding domain AMS56_RS16175 PF00549 CoA-ligase AMS56_RS16175 PF08442 ATP-grasp domain AMS56_RS16185 PF02631 RecX family AMS56_RS16190 PF00154 recA bacterial DNA recombination protein AMS56_RS16195 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS16195 PF00072 Response regulator receiver domain AMS56_RS16200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS16200 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS16205 PF00083 Sugar (and other) transporter AMS56_RS16205 PF08946 Osmosensory transporter coiled coil AMS56_RS16260 PF01527 Transposase AMS56_RS16265 PF13276 HTH-like domain AMS56_RS16265 PF13683 Integrase core domain AMS56_RS16290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS16290 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS16290 PF09308 LuxQ, periplasmic AMS56_RS16290 PF00072 Response regulator receiver domain AMS56_RS16295 PF03466 LysR substrate binding domain AMS56_RS16295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS16300 PF01804 Penicillin amidase AMS56_RS16315 PF05199 GMC oxidoreductase AMS56_RS16315 PF00732 GMC oxidoreductase AMS56_RS16330 PF13378 Enolase C-terminal domain-like AMS56_RS16330 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMS56_RS16335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS56_RS16335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS56_RS16335 PF00205 Thiamine pyrophosphate enzyme, central domain AMS56_RS16340 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMS56_RS16345 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMS56_RS16355 PF00034 Cytochrome c AMS56_RS16355 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMS56_RS16365 PF00156 Phosphoribosyl transferase domain AMS56_RS16365 PF05139 Erythromycin esterase AMS56_RS16370 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMS56_RS16370 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMS56_RS16375 PF00156 Phosphoribosyl transferase domain AMS56_RS16375 PF01738 Dienelactone hydrolase family AMS56_RS16380 PF00156 Phosphoribosyl transferase domain AMS56_RS16380 PF05139 Erythromycin esterase AMS56_RS16400 PF00005 ABC transporter AMS56_RS16415 PF00581 Rhodanese-like domain AMS56_RS16420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS16420 PF03466 LysR substrate binding domain AMS56_RS16440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS16440 PF08447 PAS fold AMS56_RS16455 PF00158 Sigma-54 interaction domain AMS56_RS16455 PF00072 Response regulator receiver domain AMS56_RS16455 PF02954 Bacterial regulatory protein, Fis family AMS56_RS16460 PF00563 EAL domain AMS56_RS16460 PF03707 Bacterial signalling protein N terminal repeat AMS56_RS16460 PF00990 Diguanylate cyclase, GGDEF domain AMS56_RS16465 PF00149 Calcineurin-like phosphoesterase AMS56_RS16465 PF16656 Purple acid Phosphatase, N-terminal domain AMS56_RS16480 PF02371 Transposase IS116/IS110/IS902 family AMS56_RS16480 PF01548 Transposase AMS56_RS16485 PF13378 Enolase C-terminal domain-like AMS56_RS16485 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMS56_RS16500 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMS56_RS16500 PF00034 Cytochrome c AMS56_RS16505 PF00271 Helicase conserved C-terminal domain AMS56_RS16505 PF00270 DEAD/DEAH box helicase AMS56_RS16525 PF08220 DeoR-like helix-turn-helix domain AMS56_RS16525 PF00455 DeoR C terminal sensor domain AMS56_RS16540 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMS56_RS16540 PF01266 FAD dependent oxidoreductase AMS56_RS16545 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMS56_RS16545 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMS56_RS16550 PF00230 Major intrinsic protein AMS56_RS16560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMS56_RS16565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMS56_RS16570 PF00733 Asparagine synthase AMS56_RS16570 PF13537 Glutamine amidotransferase domain AMS56_RS16575 PF02655 ATP-grasp domain AMS56_RS16575 PF00206 Lyase AMS56_RS16585 PF13419 Haloacid dehalogenase-like hydrolase AMS56_RS16590 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMS56_RS16595 PF07883 Cupin domain AMS56_RS16595 PF01381 Helix-turn-helix AMS56_RS16600 PF07690 Major Facilitator Superfamily AMS56_RS16605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS16605 PF03466 LysR substrate binding domain AMS56_RS16610 PF01938 TRAM domain AMS56_RS16610 PF04055 Radical SAM superfamily AMS56_RS16610 PF00919 Uncharacterized protein family UPF0004 AMS56_RS16615 PF02562 PhoH-like protein AMS56_RS16620 PF02130 Uncharacterized protein family UPF0054 AMS56_RS16625 PF04752 ChaC-like protein AMS56_RS16630 PF03471 Transporter associated domain AMS56_RS16630 PF00571 CBS domain AMS56_RS16635 PF00795 Carbon-nitrogen hydrolase AMS56_RS16640 PF02091 Glycyl-tRNA synthetase alpha subunit AMS56_RS16645 PF05746 DALR anticodon binding domain AMS56_RS16645 PF02092 Glycyl-tRNA synthetase beta subunit AMS56_RS16655 PF01553 Acyltransferase AMS56_RS16665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMS56_RS16675 PF00398 Ribosomal RNA adenine dimethylase AMS56_RS16680 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMS56_RS16685 PF00639 PPIC-type PPIASE domain AMS56_RS16685 PF09312 SurA N-terminal domain AMS56_RS16690 PF04453 LPS transport system D AMS56_RS16695 PF01636 Phosphotransferase enzyme family AMS56_RS16700 PF00483 Nucleotidyl transferase AMS56_RS16710 PF00664 ABC transporter transmembrane region AMS56_RS16710 PF00005 ABC transporter AMS56_RS16715 PF03061 Thioesterase superfamily AMS56_RS16725 PF02634 FdhD/NarQ family AMS56_RS16730 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS16735 PF02803 Thiolase, C-terminal domain AMS56_RS16735 PF00108 Thiolase, N-terminal domain AMS56_RS16740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMS56_RS16740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMS56_RS16740 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS16745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS16745 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS16745 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMS56_RS16745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS16755 PF13091 PLD-like domain AMS56_RS16760 PF00293 NUDIX domain AMS56_RS16765 PF00152 tRNA synthetases class II (D, K and N) AMS56_RS16765 PF02938 GAD domain AMS56_RS16765 PF01336 OB-fold nucleic acid binding domain AMS56_RS16785 PF03109 ABC1 family AMS56_RS16800 PF01209 ubiE/COQ5 methyltransferase family AMS56_RS16825 PF00585 C-terminal regulatory domain of Threonine dehydratase AMS56_RS16825 PF00291 Pyridoxal-phosphate dependent enzyme AMS56_RS16830 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMS56_RS16830 PF14489 QueF-like protein AMS56_RS16835 PF01042 Endoribonuclease L-PSP AMS56_RS16840 PF07969 Amidohydrolase family AMS56_RS16845 PF01418 Helix-turn-helix domain, rpiR family AMS56_RS16845 PF01380 SIS domain AMS56_RS16865 PF07690 Major Facilitator Superfamily AMS56_RS16875 PF07859 alpha/beta hydrolase fold AMS56_RS16890 PF00534 Glycosyl transferases group 1 AMS56_RS16890 PF13439 Glycosyltransferase Family 4 AMS56_RS16895 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AMS56_RS16895 PF10531 SLBB domain AMS56_RS16895 PF02563 Polysaccharide biosynthesis/export protein AMS56_RS16900 PF02397 Bacterial sugar transferase AMS56_RS16915 PF00550 Phosphopantetheine attachment site AMS56_RS16945 PF00158 Sigma-54 interaction domain AMS56_RS16945 PF02954 Bacterial regulatory protein, Fis family AMS56_RS16945 PF00072 Response regulator receiver domain AMS56_RS16955 PF13439 Glycosyltransferase Family 4 AMS56_RS16955 PF00534 Glycosyl transferases group 1 AMS56_RS16965 PF00483 Nucleotidyl transferase AMS56_RS16965 PF01050 Mannose-6-phosphate isomerase AMS56_RS16980 PF00563 EAL domain AMS56_RS16980 PF08448 PAS fold AMS56_RS16980 PF00990 Diguanylate cyclase, GGDEF domain AMS56_RS16985 PF00596 Class II Aldolase and Adducin N-terminal domain AMS56_RS17005 PF00069 Protein kinase domain AMS56_RS17045 PF02627 Carboxymuconolactone decarboxylase family AMS56_RS17105 PF00145 C-5 cytosine-specific DNA methylase AMS56_RS17120 PF13683 Integrase core domain AMS56_RS17120 PF13276 HTH-like domain AMS56_RS17125 PF01527 Transposase AMS56_RS17135 PF01527 Transposase AMS56_RS17140 PF13683 Integrase core domain AMS56_RS17140 PF13276 HTH-like domain AMS56_RS17145 PF00436 Single-strand binding protein family AMS56_RS17150 PF07690 Major Facilitator Superfamily AMS56_RS17155 PF17760 UvrA interaction domain AMS56_RS17155 PF17755 UvrA DNA-binding domain AMS56_RS17165 PF00551 Formyl transferase AMS56_RS17175 PF01810 LysE type translocator AMS56_RS17180 PF00156 Phosphoribosyl transferase domain AMS56_RS17185 PF02254 TrkA-N domain AMS56_RS17185 PF02080 TrkA-C domain AMS56_RS17185 PF00999 Sodium/hydrogen exchanger family AMS56_RS17190 PF01380 SIS domain AMS56_RS17190 PF00571 CBS domain AMS56_RS17210 PF00005 ABC transporter AMS56_RS17210 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMS56_RS17215 PF04963 Sigma-54 factor, core binding domain AMS56_RS17215 PF04552 Sigma-54, DNA binding domain AMS56_RS17215 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMS56_RS17220 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMS56_RS17225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMS56_RS17230 PF02603 HPr Serine kinase N terminus AMS56_RS17230 PF07475 HPr Serine kinase C-terminal domain AMS56_RS17235 PF03668 P-loop ATPase protein family AMS56_RS17245 PF00730 HhH-GPD superfamily base excision DNA repair protein AMS56_RS17245 PF00633 Helix-hairpin-helix motif AMS56_RS17245 PF10576 Iron-sulfur binding domain of endonuclease III AMS56_RS17245 PF14815 NUDIX domain AMS56_RS17250 PF06827 Zinc finger found in FPG and IleRS AMS56_RS17250 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMS56_RS17250 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMS56_RS17260 PF03550 Outer membrane lipoprotein LolB AMS56_RS17265 PF00288 GHMP kinases N terminal domain AMS56_RS17265 PF08544 GHMP kinases C terminal AMS56_RS17275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMS56_RS17275 PF14572 Phosphoribosyl synthetase-associated domain AMS56_RS17280 PF01386 Ribosomal L25p family AMS56_RS17280 PF14693 Ribosomal protein TL5, C-terminal domain AMS56_RS17285 PF01195 Peptidyl-tRNA hydrolase AMS56_RS17290 PF00155 Aminotransferase class I and II AMS56_RS17295 PF00037 4Fe-4S binding domain AMS56_RS17300 PF01467 Cytidylyltransferase-like AMS56_RS17310 PF00448 SRP54-type protein, GTPase domain AMS56_RS17310 PF02881 SRP54-type protein, helical bundle domain AMS56_RS17315 PF14497 Glutathione S-transferase, C-terminal domain AMS56_RS17315 PF02798 Glutathione S-transferase, N-terminal domain AMS56_RS17325 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMS56_RS17325 PF04324 BFD-like [2Fe-2S] binding domain AMS56_RS17325 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMS56_RS17325 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS56_RS17325 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMS56_RS17330 PF00355 Rieske [2Fe-2S] domain AMS56_RS17335 PF01568 Molydopterin dinucleotide binding domain AMS56_RS17335 PF00384 Molybdopterin oxidoreductase AMS56_RS17335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS56_RS17340 PF02885 Glycosyl transferase family, helical bundle domain AMS56_RS17350 PF00682 HMGL-like AMS56_RS17350 PF08502 LeuA allosteric (dimerisation) domain AMS56_RS17360 PF09411 Lipid A 3-O-deacylase (PagL) AMS56_RS17365 PF00140 Sigma-70 factor, region 1.2 AMS56_RS17365 PF04542 Sigma-70 region 2 AMS56_RS17365 PF04545 Sigma-70, region 4 AMS56_RS17375 PF01654 Cytochrome bd terminal oxidase subunit I AMS56_RS17380 PF02322 Cytochrome bd terminal oxidase subunit II AMS56_RS17385 PF08173 Membrane bound YbgT-like protein AMS56_RS17395 PF00728 Glycosyl hydrolase family 20, catalytic domain AMS56_RS17395 PF02838 Glycosyl hydrolase family 20, domain 2 AMS56_RS17395 PF03173 Putative carbohydrate binding domain AMS56_RS17395 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AMS56_RS17400 PF02378 Phosphotransferase system, EIIC AMS56_RS17400 PF00367 phosphotransferase system, EIIB AMS56_RS17400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMS56_RS17405 PF02896 PEP-utilising enzyme, TIM barrel domain AMS56_RS17405 PF05524 PEP-utilising enzyme, N-terminal AMS56_RS17405 PF00391 PEP-utilising enzyme, mobile domain AMS56_RS17405 PF00381 PTS HPr component phosphorylation site AMS56_RS17405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMS56_RS17410 PF01380 SIS domain AMS56_RS17415 PF01979 Amidohydrolase family AMS56_RS17420 PF00392 Bacterial regulatory proteins, gntR family AMS56_RS17420 PF07702 UTRA domain AMS56_RS17425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS17425 PF03466 LysR substrate binding domain AMS56_RS17430 PF00501 AMP-binding enzyme AMS56_RS17470 PF00501 AMP-binding enzyme AMS56_RS17470 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS17480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS17480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS17480 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS17480 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMS56_RS17490 PF13649 Methyltransferase domain AMS56_RS17500 PF00005 ABC transporter AMS56_RS17515 PF00202 Aminotransferase class-III AMS56_RS17525 PF07690 Major Facilitator Superfamily AMS56_RS17535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMS56_RS17535 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMS56_RS17535 PF14579 Helix-hairpin-helix motif AMS56_RS17535 PF02811 PHP domain AMS56_RS17545 PF03846 Cell division inhibitor SulA AMS56_RS17550 PF00005 ABC transporter AMS56_RS17565 PF03180 NLPA lipoprotein AMS56_RS17570 PF00672 HAMP domain AMS56_RS17570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS56_RS17570 PF02203 Tar ligand binding domain homologue AMS56_RS17580 PF02630 SCO1/SenC AMS56_RS17585 PF01040 UbiA prenyltransferase family AMS56_RS17590 PF02628 Cytochrome oxidase assembly protein AMS56_RS17610 PF00510 Cytochrome c oxidase subunit III AMS56_RS17620 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMS56_RS17630 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMS56_RS17635 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMS56_RS17635 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMS56_RS17645 PF08241 Methyltransferase domain AMS56_RS17650 PF00156 Phosphoribosyl transferase domain AMS56_RS17655 PF00588 SpoU rRNA Methylase family AMS56_RS17660 PF01661 Macro domain AMS56_RS17665 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMS56_RS17665 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMS56_RS17670 PF02556 Preprotein translocase subunit SecB AMS56_RS17675 PF00462 Glutaredoxin AMS56_RS17680 PF00581 Rhodanese-like domain AMS56_RS17685 PF00300 Histidine phosphatase superfamily (branch 1) AMS56_RS17690 PF03572 Peptidase family S41 AMS56_RS17690 PF13180 PDZ domain AMS56_RS17695 PF00899 ThiF family AMS56_RS17700 PF00391 PEP-utilising enzyme, mobile domain AMS56_RS17700 PF05524 PEP-utilising enzyme, N-terminal AMS56_RS17700 PF02896 PEP-utilising enzyme, TIM barrel domain AMS56_RS17705 PF00381 PTS HPr component phosphorylation site AMS56_RS17715 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMS56_RS17715 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMS56_RS17725 PF00909 Ammonium Transporter Family AMS56_RS17730 PF00543 Nitrogen regulatory protein P-II AMS56_RS17735 PF04380 Membrane fusogenic activity AMS56_RS17740 PF01078 Magnesium chelatase, subunit ChlI AMS56_RS17740 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMS56_RS17755 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS17755 PF00668 Condensation domain AMS56_RS17755 PF00550 Phosphopantetheine attachment site AMS56_RS17755 PF00501 AMP-binding enzyme AMS56_RS17755 PF00975 Thioesterase domain AMS56_RS17765 PF00578 AhpC/TSA family AMS56_RS17770 PF02954 Bacterial regulatory protein, Fis family AMS56_RS17770 PF00158 Sigma-54 interaction domain AMS56_RS17770 PF00072 Response regulator receiver domain AMS56_RS17775 PF00512 His Kinase A (phospho-acceptor) domain AMS56_RS17775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS17775 PF02743 Cache domain AMS56_RS17780 PF00375 Sodium:dicarboxylate symporter family AMS56_RS17785 PF00474 Sodium:solute symporter family AMS56_RS17795 PF02515 CoA-transferase family III AMS56_RS17800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS17800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS17800 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS17805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS56_RS17805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS56_RS17805 PF02770 Acyl-CoA dehydrogenase, middle domain AMS56_RS17810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMS56_RS17810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMS56_RS17810 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS17815 PF03466 LysR substrate binding domain AMS56_RS17815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS17840 PF04055 Radical SAM superfamily AMS56_RS17840 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMS56_RS17845 PF03099 Biotin/lipoate A/B protein ligase family AMS56_RS17855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS56_RS17855 PF03466 LysR substrate binding domain AMS56_RS17860 PF04359 Protein of unknown function (DUF493) AMS56_RS17865 PF01063 Amino-transferase class IV AMS56_RS17870 PF07943 Penicillin-binding protein 5, C-terminal domain AMS56_RS17870 PF00768 D-alanyl-D-alanine carboxypeptidase AMS56_RS17900 PF00005 ABC transporter AMS56_RS17905 PF02405 Permease MlaE AMS56_RS17910 PF02872 5'-nucleotidase, C-terminal domain AMS56_RS17910 PF00149 Calcineurin-like phosphoesterase AMS56_RS17925 PF03309 Type III pantothenate kinase AMS56_RS17935 PF01467 Cytidylyltransferase-like AMS56_RS17955 PF00378 Enoyl-CoA hydratase/isomerase AMS56_RS17975 PF12091 Protein of unknown function (DUF3567) AMS56_RS17980 PF02574 Homocysteine S-methyltransferase AMS56_RS17980 PF00809 Pterin binding enzyme AMS56_RS17980 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMS56_RS17980 PF02607 B12 binding domain AMS56_RS17980 PF02310 B12 binding domain AMS56_RS17985 PF02574 Homocysteine S-methyltransferase AMS56_RS17985 PF00809 Pterin binding enzyme AMS56_RS17985 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMS56_RS17985 PF02607 B12 binding domain AMS56_RS17985 PF02310 B12 binding domain AMS56_RS18340 PF00529 HlyD membrane-fusion protein of T1SS AMS56_RS18340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS18860 PF01425 Amidase AMS56_RS19055 PF02911 Formyl transferase, C-terminal domain AMS56_RS19055 PF00551 Formyl transferase AMS56_RS19100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS56_RS19100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS56_RS19190 PF03979 Sigma-70 factor, region 1.1 AMS56_RS19190 PF04545 Sigma-70, region 4 AMS56_RS19190 PF04546 Sigma-70, non-essential region AMS56_RS19190 PF04542 Sigma-70 region 2 AMS56_RS19190 PF04539 Sigma-70 region 3 AMS56_RS19190 PF00140 Sigma-70 factor, region 1.2 AMS56_RS19805 PF00306 ATP synthase alpha/beta chain, C terminal domain AMS56_RS19805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS56_RS19805 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMS56_RS19810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS56_RS19810 PF00306 ATP synthase alpha/beta chain, C terminal domain AMS56_RS19810 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMS56_RS19925 PF00155 Aminotransferase class I and II AMS56_RS19930 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS56_RS19990 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMS56_RS20045 PF01597 Glycine cleavage H-protein AMS56_RS20405 PF02895 Signal transducing histidine kinase, homodimeric domain AMS56_RS20405 PF09078 CheY binding AMS56_RS20405 PF01627 Hpt domain AMS56_RS20405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS56_RS20405 PF01584 CheW-like domain AMS56_RS20795 PF00297 Ribosomal protein L3 AMS56_RS20975 PF04898 Glutamate synthase central domain AMS56_RS20975 PF01645 Conserved region in glutamate synthase AMS56_RS20975 PF01493 GXGXG motif AMS56_RS20975 PF00310 Glutamine amidotransferases class-II AMS56_RS20980 PF01493 GXGXG motif AMS56_RS20980 PF01645 Conserved region in glutamate synthase AMS56_RS20980 PF04898 Glutamate synthase central domain AMS56_RS20980 PF00310 Glutamine amidotransferases class-II AMS56_RS20985 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS56_RS20985 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMS56_RS21155 PF00032 Cytochrome b(C-terminal)/b6/petD AMS56_RS21155 PF00033 Cytochrome b/b6/petB AMS56_RS21160 PF02167 Cytochrome C1 family AMS56_RS21450 PF01488 Shikimate / quinate 5-dehydrogenase AMS56_RS21450 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMS56_RS21450 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMS56_RS21460 PF01321 Creatinase/Prolidase N-terminal domain AMS56_RS21460 PF00557 Metallopeptidase family M24 AMS56_RS21570 PF00834 Ribulose-phosphate 3 epimerase family AMS56_RS21665 PF00905 Penicillin binding protein transpeptidase domain AMS56_RS21715 PF02491 SHS2 domain inserted in FTSA AMS56_RS21740 PF01043 SecA preprotein cross-linking domain AMS56_RS21740 PF02810 SEC-C motif AMS56_RS21740 PF07516 SecA Wing and Scaffold domain AMS56_RS21740 PF07517 SecA DEAD-like domain AMS56_RS22545 PF06007 Phosphonate metabolism protein PhnJ AMS56_RS22565 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS22580 PF03807 NADP oxidoreductase coenzyme F420-dependent AMS56_RS22580 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMS56_RS22800 PF14765 Polyketide synthase dehydratase AMS56_RS22800 PF00550 Phosphopantetheine attachment site AMS56_RS22800 PF08659 KR domain AMS56_RS22800 PF02801 Beta-ketoacyl synthase, C-terminal domain AMS56_RS22800 PF00109 Beta-ketoacyl synthase, N-terminal domain AMS56_RS22800 PF16197 Ketoacyl-synthetase C-terminal extension AMS56_RS22800 PF00698 Acyl transferase domain AMS56_RS23560 PF02390 Putative methyltransferase AMS56_RS23930 PF01717 Cobalamin-independent synthase, Catalytic domain AMS56_RS23930 PF08267 Cobalamin-independent synthase, N-terminal domain AMS56_RS24065 PF13419 Haloacid dehalogenase-like hydrolase AMS56_RS24080 PF03989 DNA gyrase C-terminal domain, beta-propeller AMS56_RS24080 PF00521 DNA gyrase/topoisomerase IV, subunit A AMS56_RS24105 PF00266 Aminotransferase class-V AMS56_RS24250 PF07995 Glucose / Sorbosone dehydrogenase AMS56_RS24300 PF03193 RsgA GTPase AMS56_RS24335 PF02954 Bacterial regulatory protein, Fis family AMS56_RS24335 PF00158 Sigma-54 interaction domain AMS56_RS24335 PF00072 Response regulator receiver domain AMS56_RS24350 PF00303 Thymidylate synthase AMS56_RS24425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS56_RS24425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS56_RS24585 PF00158 Sigma-54 interaction domain AMS56_RS24585 PF13426 PAS domain AMS56_RS24585 PF02954 Bacterial regulatory protein, Fis family AMS56_RS24700 PF00561 alpha/beta hydrolase fold AMS56_RS24765 PF00202 Aminotransferase class-III AMS56_RS24775 PF04958 Arginine N-succinyltransferase beta subunit AMS56_RS24960 PF03441 FAD binding domain of DNA photolyase AMS56_RS24960 PF00875 DNA photolyase AMS56_RS25160 PF00270 DEAD/DEAH box helicase AMS56_RS25160 PF11898 Domain of unknown function (DUF3418) AMS56_RS25160 PF04408 Helicase associated domain (HA2) AMS56_RS25160 PF00271 Helicase conserved C-terminal domain AMS56_RS25160 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMS56_RS25175 PF00270 DEAD/DEAH box helicase AMS56_RS25175 PF11898 Domain of unknown function (DUF3418) AMS56_RS25175 PF04408 Helicase associated domain (HA2) AMS56_RS25175 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMS56_RS25175 PF00271 Helicase conserved C-terminal domain AMS56_RS25190 PF04408 Helicase associated domain (HA2) AMS56_RS25190 PF00271 Helicase conserved C-terminal domain AMS56_RS25190 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMS56_RS25190 PF11898 Domain of unknown function (DUF3418) AMS56_RS25190 PF00270 DEAD/DEAH box helicase AMS56_RS25360 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMS56_RS25360 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMS56_RS25400 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS56_RS25400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMS56_RS25555 PF00873 AcrB/AcrD/AcrF family AMS56_RS25565 PF00873 AcrB/AcrD/AcrF family AMS56_RS25590 PF00550 Phosphopantetheine attachment site AMS56_RS25590 PF00668 Condensation domain AMS56_RS25590 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS25590 PF00501 AMP-binding enzyme AMS56_RS25625 PF00550 Phosphopantetheine attachment site AMS56_RS25625 PF00668 Condensation domain AMS56_RS25625 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS25625 PF00501 AMP-binding enzyme AMS56_RS25650 PF07993 Male sterility protein AMS56_RS25650 PF00668 Condensation domain AMS56_RS25650 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS25650 PF00501 AMP-binding enzyme AMS56_RS25650 PF00550 Phosphopantetheine attachment site AMS56_RS25760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS56_RS25760 PF01568 Molydopterin dinucleotide binding domain AMS56_RS25760 PF00384 Molybdopterin oxidoreductase AMS56_RS25875 PF07690 Major Facilitator Superfamily AMS56_RS25920 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMS56_RS25920 PF00132 Bacterial transferase hexapeptide (six repeats) AMS56_RS25920 PF14602 Hexapeptide repeat of succinyl-transferase AMS56_RS25990 PF00849 RNA pseudouridylate synthase AMS56_RS25990 PF01479 S4 domain AMS56_RS26040 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMS56_RS26040 PF13288 DXP reductoisomerase C-terminal domain AMS56_RS26040 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMS56_RS26050 PF02163 Peptidase family M50 AMS56_RS26050 PF17820 PDZ domain AMS56_RS26345 PF01546 Peptidase family M20/M25/M40 AMS56_RS26345 PF07687 Peptidase dimerisation domain AMS56_RS26385 PF00072 Response regulator receiver domain AMS56_RS26385 PF00486 Transcriptional regulatory protein, C terminal AMS56_RS26540 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMS56_RS26540 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMS56_RS26540 PF02769 AIR synthase related protein, C-terminal domain AMS56_RS26680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS56_RS26680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS56_RS26680 PF00205 Thiamine pyrophosphate enzyme, central domain AMS56_RS26685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS56_RS26685 PF00205 Thiamine pyrophosphate enzyme, central domain AMS56_RS26685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS56_RS26755 PF02562 PhoH-like protein AMS56_RS26755 PF13638 PIN domain AMS56_RS26855 PF01554 MatE AMS56_RS26935 PF05958 tRNA (Uracil-5-)-methyltransferase AMS56_RS27070 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMS56_RS27115 PF02803 Thiolase, C-terminal domain AMS56_RS27115 PF00108 Thiolase, N-terminal domain AMS56_RS27165 PF00005 ABC transporter AMS56_RS27165 PF12848 ABC transporter AMS56_RS27185 PF03060 Nitronate monooxygenase AMS56_RS27210 PF00005 ABC transporter AMS56_RS27210 PF08402 TOBE domain AMS56_RS27385 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMS56_RS27385 PF12795 Mechanosensitive ion channel porin domain AMS56_RS27385 PF00924 Mechanosensitive ion channel AMS56_RS27395 PF12801 4Fe-4S binding domain AMS56_RS27395 PF04205 FMN-binding domain AMS56_RS27560 PF00171 Aldehyde dehydrogenase family AMS56_RS27590 PF00005 ABC transporter AMS56_RS27590 PF08402 TOBE domain AMS56_RS27860 PF13193 AMP-binding enzyme C-terminal domain AMS56_RS27860 PF00550 Phosphopantetheine attachment site AMS56_RS27860 PF00668 Condensation domain AMS56_RS27860 PF00501 AMP-binding enzyme AMS56_RS27875 PF00501 AMP-binding enzyme AMS56_RS27985 PF00528 Binding-protein-dependent transport system inner membrane component AMS56_RS28070 PF02514 CobN/Magnesium Chelatase AMS56_RS28080 PF02514 CobN/Magnesium Chelatase AMS56_RS28265 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMS56_RS28265 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMS56_RS28440 PF00005 ABC transporter AMS56_RS28640 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMS56_RS28710 PF13533 Biotin-lipoyl like AMS56_RS28815 PF01757 Acyltransferase family AMS56_RS28970 PF02321 Outer membrane efflux protein AMS56_RS28980 PF04632 Fusaric acid resistance protein family AMS56_RS28990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS56_RS29020 PF00580 UvrD/REP helicase N-terminal domain AMS56_RS29020 PF13361 UvrD-like helicase C-terminal domain AMS56_RS29030 PF08264 Anticodon-binding domain of tRNA AMS56_RS29030 PF00133 tRNA synthetases class I (I, L, M and V) AMS56_RS29030 PF10458 Valyl tRNA synthetase tRNA binding arm AMS56_RS29105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS56_RS29105 PF00205 Thiamine pyrophosphate enzyme, central domain AMS56_RS29105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS56_RS29185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMS56_RS29185 PF01411 tRNA synthetases class II (A) AMS56_RS29185 PF02272 DHHA1 domain AMS56_RS29215 PF00933 Glycosyl hydrolase family 3 N terminal domain AMS56_RS29405 PF04717 Type VI secretion system, phage-baseplate injector AMS56_RS29530 PF05658 Head domain of trimeric autotransporter adhesin AMS56_RS29530 PF03895 YadA-like membrane anchor domain AMS56_RS29530 PF05662 Coiled stalk of trimeric autotransporter adhesin AMS56_RS29805 PF01554 MatE AMS56_RS29925 PF02142 MGS-like domain AMS56_RS29925 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMS56_RS29925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMS56_RS29930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMS56_RS29930 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMS56_RS29930 PF02142 MGS-like domain AMS56_RS29955 PF00117 Glutamine amidotransferase class-I AMS56_RS29955 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMS56_RS30070 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AMS56_RS30070 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AMS56_RS30140 PF01380 SIS domain AMS56_RS30350 PF12792 CSS motif domain associated with EAL AMS56_RS30350 PF00563 EAL domain AMS56_RS30370 PF12705 PD-(D/E)XK nuclease superfamily AMS56_RS30370 PF13361 UvrD-like helicase C-terminal domain AMS56_RS30370 PF00580 UvrD/REP helicase N-terminal domain AMS56_RS30565 PF07730 Histidine kinase AMS56_RS30565 PF17200 Single Cache domain 2