locus-tag	class	description
AMS56_RS00015	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMS56_RS00020	COG4221	oxidoreductase activity
AMS56_RS00025	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS00040	COG0747	negative chemotaxis
AMS56_RS00045	COG0488	(ABC) transporter
AMS56_RS00060	COG0288	reversible hydration of carbon dioxide
AMS56_RS00065	COG0183	Belongs to the thiolase family
AMS56_RS00075	COG3012	SEC-C Motif Domain Protein
AMS56_RS00095	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AMS56_RS00120	COG1785	Belongs to the alkaline phosphatase family
AMS56_RS00130	COG2199	diguanylate cyclase activity
AMS56_RS00130	COG2200	EAL domain
AMS56_RS00135	COG0025	NhaP-type Na H and K H
AMS56_RS00170	COG4650	regulator
AMS56_RS00195	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMS56_RS00210	COG1999	signal sequence binding
AMS56_RS00240	COG3511	phospholipase C
AMS56_RS00260	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMS56_RS00290	COG0596	Alpha beta hydrolase
AMS56_RS00300	COG0583	DNA-binding transcription factor activity
AMS56_RS00305	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AMS56_RS00320	COG0840	transmembrane signaling receptor activity
AMS56_RS00325	COG1609	Transcriptional regulator
AMS56_RS00380	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMS56_RS00400	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMS56_RS00405	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMS56_RS00425	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AMS56_RS00430	COG1704	LemA family
AMS56_RS00520	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AMS56_RS00530	COG2824	Alkylphosphonate utilization operon protein PhnA
AMS56_RS00550	COG0583	DNA-binding transcription factor activity
AMS56_RS00555	COG2233	PERMEase
AMS56_RS00560	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMS56_RS00570	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
AMS56_RS00580	COG1706	bacterial-type flagellum-dependent cell motility
AMS56_RS00585	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AMS56_RS00600	COG1749	Flagellar hook protein flgE
AMS56_RS00605	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AMS56_RS00610	COG1558	bacterial-type flagellum-dependent cell motility
AMS56_RS00615	COG1815	bacterial-type flagellum-dependent cell motility
AMS56_RS00625	COG2747	anti-sigma28 factor FlgM
AMS56_RS00655	COG0741	lytic transglycosylase activity
AMS56_RS00660	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMS56_RS00670	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AMS56_RS00675	COG1984	allophanate hydrolase subunit 2
AMS56_RS00705	COG4608	Belongs to the ABC transporter superfamily
AMS56_RS00710	COG0444	Belongs to the ABC transporter superfamily
AMS56_RS00715	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMS56_RS00720	COG0601	transmembrane transport
AMS56_RS00725	COG0747	negative chemotaxis
AMS56_RS00740	COG0579	oxidoreductase
AMS56_RS00760	COG3568	Endonuclease Exonuclease Phosphatase
AMS56_RS00765	COG1280	lysine exporter protein (LysE YggA)
AMS56_RS00785	COG0531	amino acid
AMS56_RS00800	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMS56_RS00860	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS00875	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AMS56_RS00885	COG2814	Major facilitator Superfamily
AMS56_RS00900	COG0667	Aldo Keto reductase
AMS56_RS00925	COG1560	Kdo2-lipid A biosynthetic process
AMS56_RS00940	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AMS56_RS00950	COG0523	cobalamin synthesis protein
AMS56_RS00970	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AMS56_RS00995	COG1309	transcriptional regulator
AMS56_RS01010	COG2814	Major facilitator Superfamily
AMS56_RS01020	COG2207	Transcriptional regulator
AMS56_RS01025	COG1064	alcohol dehydrogenase
AMS56_RS01030	COG0708	Exodeoxyribonuclease III
AMS56_RS01035	COG2326	polyphosphate kinase activity
AMS56_RS01055	COG1077	Cell shape determining protein MreB Mrl
AMS56_RS01070	COG0768	penicillin binding
AMS56_RS01075	COG0772	Belongs to the SEDS family
AMS56_RS01090	COG0720	synthase
AMS56_RS01095	COG0602	queuosine metabolic process
AMS56_RS01125	COG4695	Portal protein
AMS56_RS01355	COG2204	response regulator
AMS56_RS01360	COG5000	phosphorelay sensor kinase activity
AMS56_RS01370	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMS56_RS01370	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMS56_RS01395	COG0242	peptide deformylase activity
AMS56_RS01400	COG0758	DNA mediated transformation
AMS56_RS01415	COG0583	DNA-binding transcription factor activity
AMS56_RS01420	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMS56_RS01455	COG4695	Portal protein
AMS56_RS01460	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMS56_RS01475	COG0583	DNA-binding transcription factor activity
AMS56_RS01495	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMS56_RS01510	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AMS56_RS01510	COG2169	Transcriptional regulator
AMS56_RS01530	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AMS56_RS01615	COG0582	viral genome integration into host DNA
AMS56_RS01655	COG0592	DNA-directed DNA polymerase activity
AMS56_RS01665	COG2801	Transposase and inactivated derivatives
AMS56_RS01670	COG2963	transposase activity
AMS56_RS01685	COG0753	catalase activity
AMS56_RS01725	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMS56_RS01730	COG1024	Enoyl-CoA hydratase
AMS56_RS01730	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMS56_RS01735	COG0183	Belongs to the thiolase family
AMS56_RS01740	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS01765	COG1695	Transcriptional regulator
AMS56_RS01830	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AMS56_RS01850	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AMS56_RS01865	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMS56_RS01875	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMS56_RS01885	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AMS56_RS01885	COG4106	trans-aconitate 2-methyltransferase activity
AMS56_RS01890	COG0789	Transcriptional regulator
AMS56_RS01900	COG1987	bacterial-type flagellum assembly
AMS56_RS01915	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AMS56_RS01930	COG1346	cytolysis
AMS56_RS01940	COG0583	DNA-binding transcription factor activity
AMS56_RS01945	COG2814	Major facilitator Superfamily
AMS56_RS01950	COG1846	Transcriptional regulator
AMS56_RS01995	COG2165	general secretion pathway protein
AMS56_RS02030	COG0523	cobalamin synthesis protein
AMS56_RS02040	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMS56_RS02040	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AMS56_RS02060	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMS56_RS02060	COG0519	Catalyzes the synthesis of GMP from XMP
AMS56_RS02065	COG1902	pentaerythritol trinitrate reductase activity
AMS56_RS02080	COG0642	Histidine kinase
AMS56_RS02100	COG3186	Phenylalanine-4-hydroxylase
AMS56_RS02105	COG1522	sequence-specific DNA binding
AMS56_RS02115	COG0583	DNA-binding transcription factor activity
AMS56_RS02125	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
AMS56_RS02145	COG0559	Belongs to the binding-protein-dependent transport system permease family
AMS56_RS02190	COG1192	Involved in chromosome partitioning
AMS56_RS02195	COG1475	DNA binding
AMS56_RS02200	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AMS56_RS02210	COG0356	it plays a direct role in the translocation of protons across the membrane
AMS56_RS02250	COG0318	PFAM AMP-dependent synthetase and ligase
AMS56_RS02255	COG1832	CoA-binding protein
AMS56_RS02270	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AMS56_RS02280	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMS56_RS02280	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMS56_RS02280	COG0506	proline dehydrogenase activity
AMS56_RS02295	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS02305	COG0436	Aminotransferase
AMS56_RS02320	COG0277	FAD linked oxidase domain protein
AMS56_RS02330	COG0789	Transcriptional regulator
AMS56_RS02350	COG0668	transmembrane transport
AMS56_RS02370	COG0531	amino acid
AMS56_RS02375	COG4303	Ethanolamine ammonia lyase large subunit
AMS56_RS02380	COG4302	ethanolamine ammonia-lyase activity
AMS56_RS02390	COG1012	belongs to the aldehyde dehydrogenase family
AMS56_RS02405	COG0028	Belongs to the TPP enzyme family
AMS56_RS02415	COG1760	l-serine dehydratase
AMS56_RS02430	COG0509	glycine decarboxylation via glycine cleavage system
AMS56_RS02445	COG0673	inositol 2-dehydrogenase activity
AMS56_RS02460	COG0210	DNA helicase
AMS56_RS02465	COG3245	cytochrome
AMS56_RS02530	COG5377	YqaJ viral recombinase family
AMS56_RS02575	COG2189	Belongs to the N(4) N(6)-methyltransferase family
AMS56_RS02640	COG0582	viral genome integration into host DNA
AMS56_RS02665	COG3397	chitin binding
AMS56_RS02685	COG2267	carboxylic ester hydrolase activity
AMS56_RS02745	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS02760	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMS56_RS02795	COG0519	Catalyzes the synthesis of GMP from XMP
AMS56_RS02805	COG0561	phosphatase activity
AMS56_RS02810	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMS56_RS02820	COG0438	transferase activity, transferring glycosyl groups
AMS56_RS02840	COG1360	Flagellar Motor Protein
AMS56_RS02845	COG2201	protein-glutamate methylesterase activity
AMS56_RS02865	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMS56_RS02875	COG2201	protein-glutamate methylesterase activity
AMS56_RS02880	COG0745	RESPONSE REGULATOR receiver
AMS56_RS02885	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AMS56_RS02905	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMS56_RS02910	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMS56_RS02935	COG1950	PFAM Membrane protein of
AMS56_RS02940	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMS56_RS02955	COG2070	2-Nitropropane dioxygenase
AMS56_RS02980	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AMS56_RS02985	COG1522	sequence-specific DNA binding
AMS56_RS02995	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMS56_RS03015	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AMS56_RS03020	COG2823	Periplasmic or secreted lipoprotein
AMS56_RS03035	COG1113	amino acid transport
AMS56_RS03065	COG2084	Dehydrogenase
AMS56_RS03070	COG1280	lysine exporter protein (LysE YggA)
AMS56_RS03075	COG2814	Major facilitator Superfamily
AMS56_RS03080	COG0583	DNA-binding transcription factor activity
AMS56_RS03090	COG3047	cAMP biosynthetic process
AMS56_RS03105	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AMS56_RS03115	COG1881	PFAM PEBP family protein
AMS56_RS03120	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AMS56_RS03125	COG0280	phosphate acetyltransferase
AMS56_RS03125	COG0281	malic enzyme
AMS56_RS03145	COG1522	sequence-specific DNA binding
AMS56_RS03165	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMS56_RS03170	COG2151	metal-sulfur cluster biosynthetic enzyme
AMS56_RS03175	COG3396	Phenylacetate-CoA oxygenase
AMS56_RS03180	COG3460	Phenylacetate-CoA oxygenase
AMS56_RS03185	COG3396	Phenylacetate-CoA oxygenase
AMS56_RS03245	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AMS56_RS03285	COG0514	ATP-dependent DNA helicase (RecQ)
AMS56_RS03415	COG0201	protein transport
AMS56_RS03460	COG4232	protein-disulfide reductase activity
AMS56_RS03480	COG1333	cytochrome c biogenesis protein
AMS56_RS03485	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMS56_RS03490	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AMS56_RS03495	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AMS56_RS03550	COG0232	Belongs to the dGTPase family. Type 2 subfamily
AMS56_RS03560	COG1175	transmembrane transport
AMS56_RS03565	COG0395	ABC-type sugar transport system, permease component
AMS56_RS03570	COG3842	ATPase activity
AMS56_RS03575	COG0584	glycerophosphoryl diester phosphodiesterase
AMS56_RS03590	COG0067	glutamate synthase
AMS56_RS03590	COG0070	glutamate synthase
AMS56_RS03590	COG0069	glutamate synthase activity
AMS56_RS03600	COG1115	amino acid carrier protein
AMS56_RS03610	COG4178	(ABC) transporter
AMS56_RS03635	COG1127	ABC transporter
AMS56_RS03640	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMS56_RS03645	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMS56_RS03665	COG1131	(ABC) transporter
AMS56_RS03670	COG0842	Transport permease protein
AMS56_RS03675	COG5007	Belongs to the BolA IbaG family
AMS56_RS03695	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMS56_RS03705	COG2095	MarC family integral membrane protein
AMS56_RS03755	COG0805	protein transport
AMS56_RS03760	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMS56_RS03765	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AMS56_RS03770	COG0723	plastoquinol--plastocyanin reductase activity
AMS56_RS03775	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMS56_RS03780	COG2857	Cytochrome c1
AMS56_RS03785	COG0625	glutathione transferase activity
AMS56_RS03790	COG2969	positive regulation of protein catabolic process
AMS56_RS03820	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AMS56_RS03825	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AMS56_RS03840	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
AMS56_RS03980	COG0308	aminopeptidase N
AMS56_RS04035	COG2801	Transposase and inactivated derivatives
AMS56_RS04045	COG1278	Cold shock
AMS56_RS04050	COG0531	amino acid
AMS56_RS04055	COG3384	dioxygenase
AMS56_RS04065	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMS56_RS04070	COG2890	protein-(glutamine-N5) methyltransferase activity
AMS56_RS04095	COG0006	proline dipeptidase activity
AMS56_RS04105	COG1335	isochorismatase
AMS56_RS04115	COG0488	(ABC) transporter
AMS56_RS04130	COG0584	glycerophosphoryl diester phosphodiesterase
AMS56_RS04155	COG0012	GTP binding
AMS56_RS04170	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMS56_RS04175	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMS56_RS04190	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMS56_RS04210	COG0512	Glutamine amidotransferase of anthranilate synthase
AMS56_RS04220	COG0546	phosphoglycolate phosphatase activity
AMS56_RS04225	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AMS56_RS04230	COG2967	ApaG domain
AMS56_RS04235	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
AMS56_RS04245	COG2050	protein possibly involved in aromatic compounds catabolism
AMS56_RS04250	COG1024	Enoyl-CoA hydratase
AMS56_RS04255	COG0183	Belongs to the thiolase family
AMS56_RS04265	COG1024	Enoyl-CoA hydratase
AMS56_RS04295	COG0243	molybdopterin cofactor binding
AMS56_RS04300	COG0318	PFAM AMP-dependent synthetase and ligase
AMS56_RS04305	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AMS56_RS04325	COG3116	cell division
AMS56_RS04335	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMS56_RS04340	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMS56_RS04375	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AMS56_RS04390	COG0678	peroxiredoxin activity
AMS56_RS04410	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AMS56_RS04420	COG0494	nUDIX hydrolase
AMS56_RS04425	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AMS56_RS04450	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMS56_RS04455	COG4536	flavin adenine dinucleotide binding
AMS56_RS04465	COG0142	geranyltranstransferase activity
AMS56_RS04505	COG2095	MarC family integral membrane protein
AMS56_RS04510	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
AMS56_RS04515	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMS56_RS04555	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMS56_RS04560	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
AMS56_RS04575	COG0439	Biotin carboxylase
AMS56_RS04580	COG0511	ligase activity, forming carbon-carbon bonds
AMS56_RS04585	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AMS56_RS04590	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMS56_RS04600	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMS56_RS04605	COG3150	esterase
AMS56_RS04610	COG0557	exoribonuclease II activity
AMS56_RS04615	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AMS56_RS04620	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMS56_RS04635	COG1414	Transcriptional regulator
AMS56_RS04640	COG3734	2-keto-3-deoxy-galactonokinase
AMS56_RS04650	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS04665	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMS56_RS04670	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS04680	COG0284	orotidine-5'-phosphate decarboxylase activity
AMS56_RS04685	COG1546	Belongs to the CinA family
AMS56_RS04690	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AMS56_RS04720	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMS56_RS04730	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AMS56_RS04735	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AMS56_RS04740	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AMS56_RS04745	COG2814	Major facilitator Superfamily
AMS56_RS04760	COG0583	DNA-binding transcription factor activity
AMS56_RS04770	COG1301	dicarboxylic acid transport
AMS56_RS04775	COG4266	Belongs to the allantoicase family
AMS56_RS04780	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
AMS56_RS04785	COG0735	belongs to the Fur family
AMS56_RS04790	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMS56_RS04820	COG1466	dna polymerase III delta subunit
AMS56_RS04825	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AMS56_RS04830	COG1981	membrane
AMS56_RS04835	COG1737	Transcriptional regulator
AMS56_RS04835	COG0837	glucose binding
AMS56_RS04845	COG0800	Aldolase
AMS56_RS04865	COG2223	nitrite transmembrane transporter activity
AMS56_RS04870	COG0583	DNA-binding transcription factor activity
AMS56_RS04875	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AMS56_RS04880	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMS56_RS04885	COG0765	amino acid transport
AMS56_RS04890	COG0765	amino acid transport
AMS56_RS04895	COG1126	abc transporter atp-binding protein
AMS56_RS04925	COG0121	glutamine amidotransferase
AMS56_RS04930	COG0418	dihydroorotase activity
AMS56_RS04960	COG1917	Cupin 2, conserved barrel domain protein
AMS56_RS04960	COG4977	sequence-specific DNA binding
AMS56_RS04965	COG0625	glutathione transferase activity
AMS56_RS04970	COG0625	glutathione transferase activity
AMS56_RS04980	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AMS56_RS04990	COG0588	phosphoglycerate mutase activity
AMS56_RS05030	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AMS56_RS05035	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMS56_RS05040	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMS56_RS05045	COG0006	proline dipeptidase activity
AMS56_RS05050	COG0625	glutathione transferase activity
AMS56_RS05060	COG0069	glutamate synthase activity
AMS56_RS05130	COG3008	intermembrane lipid transfer
AMS56_RS05130	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMS56_RS05135	COG2995	paraquat-inducible protein a
AMS56_RS05150	COG2353	YceI-like domain
AMS56_RS05155	COG2353	YceI-like domain
AMS56_RS05165	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AMS56_RS05170	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AMS56_RS05175	COG1862	Preprotein translocase
AMS56_RS05180	COG0343	queuine tRNA-ribosyltransferase activity
AMS56_RS05190	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMS56_RS05210	COG0783	Belongs to the Dps family
AMS56_RS05230	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
AMS56_RS05235	COG2188	Transcriptional regulator
AMS56_RS05240	COG3624	Phosphonate C-P lyase system protein PhnG
AMS56_RS05250	COG3626	phosphonate metabolism
AMS56_RS05255	COG3627	carbon phosphorus lyase activity
AMS56_RS05260	COG4107	phosphonate C-P lyase system protein PhnK
AMS56_RS05265	COG4778	phosphonate C-P lyase system protein PhnL
AMS56_RS05270	COG3454	Phosphonate metabolism
AMS56_RS05280	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
AMS56_RS05285	COG3639	organic phosphonate transmembrane transporter activity
AMS56_RS05300	COG0247	lactate metabolic process
AMS56_RS05305	COG0277	FAD linked oxidase domain protein
AMS56_RS05310	COG0277	FAD linked oxidase domain protein
AMS56_RS05315	COG0277	FAD linked oxidase domain protein
AMS56_RS05320	COG2096	Adenosyltransferase
AMS56_RS05325	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMS56_RS05325	COG1017	nitric oxide dioxygenase activity
AMS56_RS05330	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AMS56_RS05335	COG0312	modulator of DNA gyrase
AMS56_RS05340	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMS56_RS05345	COG3164	Protein of unknown function
AMS56_RS05350	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AMS56_RS05355	COG0497	DNA recombination
AMS56_RS05360	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMS56_RS05400	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AMS56_RS05410	COG1428	Deoxynucleoside kinase
AMS56_RS05415	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AMS56_RS05420	COG0617	tRNA 3'-terminal CCA addition
AMS56_RS05430	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AMS56_RS05450	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMS56_RS05455	COG0586	Pfam SNARE associated Golgi protein
AMS56_RS05560	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMS56_RS05575	COG1368	sulfuric ester hydrolase activity
AMS56_RS05580	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS05580	COG0604	alcohol dehydrogenase
AMS56_RS05580	COG3321	synthase
AMS56_RS05585	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AMS56_RS05590	COG0156	8-amino-7-oxononanoate synthase activity
AMS56_RS05630	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMS56_RS05635	COG3206	protein involved in exopolysaccharide biosynthesis
AMS56_RS05635	COG0489	protein tyrosine kinase activity
AMS56_RS05645	COG3562	capsule polysaccharide
AMS56_RS05650	COG1045	serine acetyltransferase
AMS56_RS05665	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AMS56_RS05670	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AMS56_RS05675	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AMS56_RS05675	COG0517	IMP dehydrogenase activity
AMS56_RS05705	COG2885	chlorophyll binding
AMS56_RS05730	COG0824	Thioesterase
AMS56_RS05735	COG4221	oxidoreductase activity
AMS56_RS05790	COG0450	alkyl hydroperoxide reductase
AMS56_RS05800	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS05825	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMS56_RS05835	COG2814	Major facilitator Superfamily
AMS56_RS05860	COG2814	Major facilitator Superfamily
AMS56_RS05865	COG0778	Nitroreductase
AMS56_RS05870	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMS56_RS05875	COG0583	DNA-binding transcription factor activity
AMS56_RS05880	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AMS56_RS05905	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMS56_RS05920	COG4774	siderophore transport
AMS56_RS05925	COG1120	ATPase activity
AMS56_RS05935	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMS56_RS05970	COG0730	response to heat
AMS56_RS05980	COG0584	glycerophosphoryl diester phosphodiesterase
AMS56_RS05985	COG1280	lysine exporter protein (LysE YggA)
AMS56_RS06035	COG0604	alcohol dehydrogenase
AMS56_RS06040	COG1733	regulation of RNA biosynthetic process
AMS56_RS06050	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AMS56_RS06065	COG1773	rubredoxin
AMS56_RS06085	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
AMS56_RS06160	COG1215	transferase activity, transferring glycosyl groups
AMS56_RS06175	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMS56_RS06190	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMS56_RS06215	COG0859	PFAM glycosyl transferase family 9
AMS56_RS06245	COG0804	urea catabolic process
AMS56_RS06270	COG1129	ABC transporter
AMS56_RS06280	COG0559	Belongs to the binding-protein-dependent transport system permease family
AMS56_RS06290	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMS56_RS06300	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMS56_RS06310	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMS56_RS06340	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AMS56_RS06345	COG2226	methyltransferase
AMS56_RS06365	COG0762	integral membrane protein
AMS56_RS06400	COG0436	Aminotransferase
AMS56_RS06425	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMS56_RS06425	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMS56_RS06445	COG2814	Major facilitator Superfamily
AMS56_RS06460	COG1126	abc transporter atp-binding protein
AMS56_RS06465	COG0765	amino acid transport
AMS56_RS06470	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMS56_RS06480	COG0363	glucosamine-6-phosphate deaminase activity
AMS56_RS06485	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMS56_RS06495	COG1175	transmembrane transport
AMS56_RS06500	COG0395	ABC-type sugar transport system, permease component
AMS56_RS06505	COG3842	ATPase activity
AMS56_RS06510	COG2860	membrane
AMS56_RS06515	COG1193	negative regulation of DNA recombination
AMS56_RS06520	COG0492	ferredoxin-NADP+ reductase activity
AMS56_RS06525	COG1674	ftsk spoiiie
AMS56_RS06530	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AMS56_RS06535	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMS56_RS06570	COG2894	cell division
AMS56_RS06590	COG0859	PFAM glycosyl transferase family 9
AMS56_RS06600	COG0477	Major facilitator Superfamily
AMS56_RS06630	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMS56_RS06635	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AMS56_RS06645	COG1561	YicC-like family, N-terminal region
AMS56_RS06660	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMS56_RS06680	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AMS56_RS06690	COG1278	Cold shock
AMS56_RS06695	COG2176	DNA-directed DNA polymerase activity
AMS56_RS06710	COG4772	TonB-dependent receptor
AMS56_RS06760	COG0583	DNA-binding transcription factor activity
AMS56_RS06770	COG0308	aminopeptidase N
AMS56_RS06780	COG2119	membrane
AMS56_RS06785	COG0402	S-adenosylhomocysteine deaminase activity
AMS56_RS06790	COG2252	PERMEase
AMS56_RS06795	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AMS56_RS06815	COG0154	amidase activity
AMS56_RS06820	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AMS56_RS06845	COG3383	formate dehydrogenase (NAD+) activity
AMS56_RS06860	COG1910	domain protein
AMS56_RS06870	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMS56_RS06875	COG0546	phosphoglycolate phosphatase activity
AMS56_RS06900	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMS56_RS06905	COG0077	Prephenate dehydratase
AMS56_RS06905	COG1605	Chorismate mutase
AMS56_RS06910	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMS56_RS06935	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AMS56_RS06945	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
AMS56_RS06970	COG2951	lytic endotransglycosylase activity
AMS56_RS06975	COG0123	including yeast histone deacetylase and acetoin utilization protein
AMS56_RS06980	COG2267	carboxylic ester hydrolase activity
AMS56_RS06990	COG2011	ABC-type metal ion transport system permease component
AMS56_RS07010	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS07070	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AMS56_RS07085	COG0501	Belongs to the peptidase M48B family
AMS56_RS07095	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMS56_RS07100	COG3028	Belongs to the UPF0307 family
AMS56_RS07105	COG0312	modulator of DNA gyrase
AMS56_RS07115	COG2204	response regulator
AMS56_RS07150	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMS56_RS07160	COG0640	Transcriptional regulator
AMS56_RS07180	COG0114	fumarate hydratase activity
AMS56_RS07190	COG0534	Mate efflux family protein
AMS56_RS07195	COG2501	S4 domain
AMS56_RS07210	COG3045	CreA protein
AMS56_RS07225	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AMS56_RS07230	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AMS56_RS07250	COG1322	Protein conserved in bacteria
AMS56_RS07265	COG0303	'Molybdopterin
AMS56_RS07275	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMS56_RS07280	COG1530	ribonuclease E activity
AMS56_RS07290	COG0546	phosphoglycolate phosphatase activity
AMS56_RS07315	COG1399	metal-binding, possibly nucleic acid-binding protein
AMS56_RS07350	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMS56_RS07370	COG3026	antisigma factor binding
AMS56_RS07375	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMS56_RS07390	COG0681	Belongs to the peptidase S26 family
AMS56_RS07395	COG0571	ribonuclease III activity
AMS56_RS07400	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AMS56_RS07425	COG2204	response regulator
AMS56_RS07445	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMS56_RS07465	COG1956	GAF domain-containing protein
AMS56_RS07470	COG0583	DNA-binding transcription factor activity
AMS56_RS07480	COG2153	protein acetylation
AMS56_RS07495	COG1999	signal sequence binding
AMS56_RS07505	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
AMS56_RS07510	COG1132	(ABC) transporter
AMS56_RS07515	COG0438	transferase activity, transferring glycosyl groups
AMS56_RS07530	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMS56_RS07535	COG0683	leucine binding
AMS56_RS07540	COG3511	phospholipase C
AMS56_RS07555	COG0596	Alpha beta hydrolase
AMS56_RS07560	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMS56_RS07575	COG3394	polysaccharide catabolic process
AMS56_RS07600	COG4598	ABC transporter
AMS56_RS07610	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMS56_RS07645	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMS56_RS07655	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AMS56_RS07680	COG1959	2 iron, 2 sulfur cluster binding
AMS56_RS07690	COG2151	metal-sulfur cluster biosynthetic enzyme
AMS56_RS07695	COG0822	iron-sulfur transferase activity
AMS56_RS07700	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AMS56_RS07710	COG0396	ATPase activity
AMS56_RS07715	COG0719	Fe-S assembly protein
AMS56_RS07725	COG0840	transmembrane signaling receptor activity
AMS56_RS07730	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMS56_RS07735	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMS56_RS07750	COG0826	peptidase U32
AMS56_RS07755	COG0826	peptidase U32
AMS56_RS07760	COG3154	lipid carrier protein
AMS56_RS07800	COG2151	metal-sulfur cluster biosynthetic enzyme
AMS56_RS07815	COG0415	Belongs to the DNA photolyase family
AMS56_RS07820	COG0529	Catalyzes the synthesis of activated sulfate
AMS56_RS07855	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AMS56_RS07870	COG0402	S-adenosylhomocysteine deaminase activity
AMS56_RS07895	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AMS56_RS07900	COG0174	glutamine synthetase
AMS56_RS07915	COG3668	Plasmid stabilization system
AMS56_RS07925	COG2801	Transposase and inactivated derivatives
AMS56_RS07940	COG0583	DNA-binding transcription factor activity
AMS56_RS07945	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS07955	COG0477	Major facilitator Superfamily
AMS56_RS07965	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AMS56_RS07965	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMS56_RS07970	COG1643	Atp-dependent helicase
AMS56_RS07990	COG1058	Belongs to the CinA family
AMS56_RS07990	COG1546	Belongs to the CinA family
AMS56_RS08000	COG0174	glutamine synthetase
AMS56_RS08020	COG2197	response regulator
AMS56_RS08025	COG4585	Histidine kinase
AMS56_RS08030	COG2181	nitrate reductase activity
AMS56_RS08035	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
AMS56_RS08040	COG1140	nitrate reductase beta subunit
AMS56_RS08045	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
AMS56_RS08050	COG2223	nitrite transmembrane transporter activity
AMS56_RS08065	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMS56_RS08070	COG0339	signal peptide processing
AMS56_RS08080	COG4566	intracellular signal transduction
AMS56_RS08090	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
AMS56_RS08095	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMS56_RS08100	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMS56_RS08115	COG1414	Transcriptional regulator
AMS56_RS08135	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMS56_RS08145	COG1104	cysteine desulfurase activity
AMS56_RS08150	COG0822	iron-sulfur transferase activity
AMS56_RS08155	COG0316	Belongs to the HesB IscA family
AMS56_RS08175	COG2975	iron-sulfur cluster assembly
AMS56_RS08195	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AMS56_RS08210	COG1136	(ABC) transporter
AMS56_RS08215	COG0084	hydrolase, TatD family'
AMS56_RS08220	COG0658	competence protein
AMS56_RS08220	COG2333	competence protein COMEC
AMS56_RS08225	COG2267	carboxylic ester hydrolase activity
AMS56_RS08245	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AMS56_RS08255	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AMS56_RS08265	COG2833	Protein of unknown function (DUF455)
AMS56_RS08270	COG0596	Alpha beta hydrolase
AMS56_RS08275	COG0613	PHP domain protein
AMS56_RS08280	COG0009	L-threonylcarbamoyladenylate synthase
AMS56_RS08285	COG1994	Peptidase M50
AMS56_RS08290	COG0180	Tryptophanyl-tRNA synthetase
AMS56_RS08300	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMS56_RS08305	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
AMS56_RS08310	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMS56_RS08315	COG2850	peptidyl-arginine hydroxylation
AMS56_RS08345	COG0483	inositol monophosphate 1-phosphatase activity
AMS56_RS08355	COG1045	serine acetyltransferase
AMS56_RS08360	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMS56_RS08370	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMS56_RS08395	COG0037	tRNA processing
AMS56_RS08400	COG0527	aspartate kinase activity
AMS56_RS08445	COG2895	sulfate adenylyltransferase (ATP) activity
AMS56_RS08445	COG0529	Catalyzes the synthesis of activated sulfate
AMS56_RS08450	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMS56_RS08475	COG2175	clavaminate synthase activity
AMS56_RS08495	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AMS56_RS08500	COG3958	Transketolase
AMS56_RS08515	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMS56_RS08535	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMS56_RS08550	COG0024	Methionine aminopeptidase
AMS56_RS08565	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMS56_RS08575	COG0243	molybdopterin cofactor binding
AMS56_RS08595	COG4166	transmembrane transport
AMS56_RS08600	COG4174	ABC transporter (Permease)
AMS56_RS08605	COG4239	(ABC) transporter, permease
AMS56_RS08610	COG4172	Belongs to the ABC transporter superfamily
AMS56_RS08615	COG0791	NLP P60 protein
AMS56_RS08620	COG1752	Esterase of the alpha-beta hydrolase superfamily
AMS56_RS08680	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AMS56_RS08690	COG0583	DNA-binding transcription factor activity
AMS56_RS08700	COG2224	Isocitrate lyase
AMS56_RS08705	COG0513	Belongs to the DEAD box helicase family
AMS56_RS08715	COG1214	PFAM Peptidase M22, glycoprotease
AMS56_RS08725	COG1573	uracil-dna glycosylase
AMS56_RS08740	COG0351	phosphomethylpyrimidine kinase
AMS56_RS08745	COG0477	Major facilitator Superfamily
AMS56_RS08765	COG0488	(ABC) transporter
AMS56_RS08770	COG0386	Belongs to the glutathione peroxidase family
AMS56_RS08785	COG2890	protein-(glutamine-N5) methyltransferase activity
AMS56_RS08795	COG1393	Belongs to the ArsC family
AMS56_RS08835	COG0242	peptide deformylase activity
AMS56_RS08840	COG1187	pseudouridine synthase activity
AMS56_RS08850	COG0024	Methionine aminopeptidase
AMS56_RS08880	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AMS56_RS08895	COG0750	zinc metalloprotease
AMS56_RS08935	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMS56_RS08970	COG0330	HflC and HflK could
AMS56_RS08980	COG2867	negative regulation of translational initiation
AMS56_RS08990	COG0697	spore germination
AMS56_RS09050	COG1196	nuclear chromosome segregation
AMS56_RS09060	COG2814	Major facilitator Superfamily
AMS56_RS09080	COG1619	proteins homologs of microcin C7 resistance protein MccF
AMS56_RS09090	COG1953	Uracil, thiamine, allantoin
AMS56_RS09105	COG3648	Uricase
AMS56_RS09105	COG3195	allantoin biosynthetic process
AMS56_RS09110	COG4266	Belongs to the allantoicase family
AMS56_RS09125	COG2351	hydroxyisourate hydrolase activity
AMS56_RS09135	COG0583	DNA-binding transcription factor activity
AMS56_RS09140	COG3360	Dodecin
AMS56_RS09200	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMS56_RS09215	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMS56_RS09325	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMS56_RS09330	COG1846	Transcriptional regulator
AMS56_RS09335	COG1929	Belongs to the glycerate kinase type-1 family
AMS56_RS09355	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AMS56_RS09410	COG4181	ATPase activity
AMS56_RS09425	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMS56_RS09435	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMS56_RS09435	COG0047	phosphoribosylformylglycinamidine synthase activity
AMS56_RS09445	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMS56_RS09470	COG0318	PFAM AMP-dependent synthetase and ligase
AMS56_RS09475	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMS56_RS09475	COG1024	Enoyl-CoA hydratase
AMS56_RS09480	COG1335	isochorismatase
AMS56_RS09485	COG0183	Belongs to the thiolase family
AMS56_RS09505	COG2130	NADP-dependent
AMS56_RS09510	COG0657	acetylesterase activity
AMS56_RS09525	COG0354	folic acid binding
AMS56_RS09530	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMS56_RS09545	COG1247	-acetyltransferase
AMS56_RS09550	COG0084	hydrolase, TatD family'
AMS56_RS09575	COG0438	transferase activity, transferring glycosyl groups
AMS56_RS09595	COG0252	asparaginase activity
AMS56_RS09605	COG1652	LysM domain
AMS56_RS09615	COG2084	Dehydrogenase
AMS56_RS09620	COG3622	Belongs to the hyi family
AMS56_RS09625	COG3960	tartronate-semialdehyde synthase activity
AMS56_RS09630	COG0583	DNA-binding transcription factor activity
AMS56_RS09685	COG0306	phosphate transporter
AMS56_RS09690	COG0791	NLP P60 protein
AMS56_RS09695	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AMS56_RS09700	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMS56_RS09705	COG0726	polysaccharide deacetylase
AMS56_RS09710	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMS56_RS09710	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AMS56_RS09720	COG0463	Glycosyl transferase, family 2
AMS56_RS09725	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AMS56_RS09730	COG2076	Multidrug Resistance protein
AMS56_RS09735	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMS56_RS09745	COG0436	Aminotransferase
AMS56_RS09765	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AMS56_RS09770	COG0314	molybdopterin synthase activity
AMS56_RS09775	COG2346	COG2346, Truncated hemoglobins
AMS56_RS09780	COG1959	2 iron, 2 sulfur cluster binding
AMS56_RS09785	COG0542	response to heat
AMS56_RS09810	COG0534	Mate efflux family protein
AMS56_RS09825	COG3228	Belongs to the MtfA family
AMS56_RS09830	COG0477	Major facilitator Superfamily
AMS56_RS09835	COG0789	Transcriptional regulator
AMS56_RS09840	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMS56_RS09855	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AMS56_RS09870	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMS56_RS09915	COG0670	Belongs to the BI1 family
AMS56_RS09950	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMS56_RS09965	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AMS56_RS09970	COG0330	HflC and HflK could
AMS56_RS09975	COG0330	HflC and HflK could
AMS56_RS09995	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
AMS56_RS10015	COG2183	response to ionizing radiation
AMS56_RS10030	COG1199	ATP-dependent helicase activity
AMS56_RS10040	COG0564	pseudouridine synthase activity
AMS56_RS10050	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMS56_RS10055	COG0183	Belongs to the thiolase family
AMS56_RS10060	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS10080	COG0183	Belongs to the thiolase family
AMS56_RS10090	COG0626	cystathionine gamma-synthase activity
AMS56_RS10095	COG0560	Phosphoserine phosphatase
AMS56_RS10105	COG0390	transport system, permease component
AMS56_RS10110	COG1122	ATPase activity
AMS56_RS10115	COG2982	Protein involved in outer membrane biogenesis
AMS56_RS10120	COG0488	(ABC) transporter
AMS56_RS10135	COG2070	2-Nitropropane dioxygenase
AMS56_RS10140	COG3047	cAMP biosynthetic process
AMS56_RS10150	COG1914	H( )-stimulated, divalent metal cation uptake system
AMS56_RS10155	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AMS56_RS10160	COG3842	ATPase activity
AMS56_RS10165	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMS56_RS10170	COG1177	transmembrane transport
AMS56_RS10175	COG0730	response to heat
AMS56_RS10175	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMS56_RS10200	COG3655	Transcriptional regulator
AMS56_RS10220	COG1538	Outer membrane efflux protein
AMS56_RS10225	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMS56_RS10240	COG0038	chloride channel
AMS56_RS10245	COG2855	membrane
AMS56_RS10265	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMS56_RS10275	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMS56_RS10280	COG1609	Transcriptional regulator
AMS56_RS10375	COG0598	Magnesium transport protein CorA
AMS56_RS10410	COG3264	Mechanosensitive ion channel
AMS56_RS10410	COG1196	nuclear chromosome segregation
AMS56_RS10440	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
AMS56_RS10455	COG4263	nitrous-oxide reductase activity
AMS56_RS10475	COG0840	transmembrane signaling receptor activity
AMS56_RS10485	COG2376	Dihydroxyacetone kinase
AMS56_RS10500	COG0475	glutathione-regulated potassium exporter activity
AMS56_RS10555	COG3121	Chaperone
AMS56_RS10560	COG3188	usher protein
AMS56_RS10590	COG5295	Hep Hag repeat protein
AMS56_RS10605	COG2197	response regulator
AMS56_RS10635	COG3328	transposase activity
AMS56_RS10670	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMS56_RS10675	COG1012	belongs to the aldehyde dehydrogenase family
AMS56_RS10690	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMS56_RS10700	COG3842	ATPase activity
AMS56_RS10715	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AMS56_RS10725	COG2916	Histone family protein nucleoid-structuring protein H-NS
AMS56_RS10755	COG2274	protein secretion by the type I secretion system
AMS56_RS10760	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMS56_RS10770	COG0457	Tetratricopeptide repeat
AMS56_RS10770	COG0859	PFAM glycosyl transferase family 9
AMS56_RS10775	COG0529	Catalyzes the synthesis of activated sulfate
AMS56_RS10780	COG0745	RESPONSE REGULATOR receiver
AMS56_RS10805	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AMS56_RS10815	COG2986	histidine ammonia-lyase
AMS56_RS10825	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AMS56_RS10840	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AMS56_RS10860	COG1595	DNA-templated transcription, initiation
AMS56_RS10865	COG4944	Protein of unknown function (DUF1109)
AMS56_RS10885	COG3220	belongs to the UPF0276 family
AMS56_RS10905	COG2192	nodulation
AMS56_RS10930	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMS56_RS10950	COG0165	Argininosuccinate lyase
AMS56_RS10955	COG0137	argininosuccinate synthase activity
AMS56_RS10970	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMS56_RS10980	COG3251	PFAM MbtH domain protein
AMS56_RS10995	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AMS56_RS11000	COG2207	Transcriptional regulator
AMS56_RS11005	COG0697	spore germination
AMS56_RS11010	COG0835	chemotaxis
AMS56_RS11030	COG0318	PFAM AMP-dependent synthetase and ligase
AMS56_RS11035	COG0477	Major facilitator Superfamily
AMS56_RS11045	COG1732	Glycine betaine
AMS56_RS11050	COG1174	glycine betaine transport
AMS56_RS11055	COG1125	glycine betaine transport
AMS56_RS11060	COG1174	glycine betaine transport
AMS56_RS11075	COG2235	arginine
AMS56_RS11080	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMS56_RS11090	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS11100	COG0583	DNA-binding transcription factor activity
AMS56_RS11105	COG0625	glutathione transferase activity
AMS56_RS11125	COG1846	Transcriptional regulator
AMS56_RS11130	COG2807	transmembrane transport
AMS56_RS11135	COG1649	PFAM Uncharacterised BCR, COG1649
AMS56_RS11150	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
AMS56_RS11160	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMS56_RS11180	COG3979	chitinase
AMS56_RS11190	COG0400	carboxylic ester hydrolase activity
AMS56_RS11220	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
AMS56_RS11245	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMS56_RS11250	COG4774	siderophore transport
AMS56_RS11255	COG3486	L-lysine 6-monooxygenase (NADPH) activity
AMS56_RS11295	COG1120	ATPase activity
AMS56_RS11325	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS11335	COG1063	alcohol dehydrogenase
AMS56_RS11340	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMS56_RS11350	COG1879	ABC-type sugar transport system periplasmic component
AMS56_RS11370	COG2375	cellular response to nickel ion
AMS56_RS11370	COG1132	(ABC) transporter
AMS56_RS11380	COG3121	Chaperone
AMS56_RS11390	COG3539	Fimbrial protein
AMS56_RS11400	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMS56_RS11410	COG1309	transcriptional regulator
AMS56_RS11415	COG0739	heme binding
AMS56_RS11420	COG0765	amino acid transport
AMS56_RS11425	COG4597	amino acid ABC transporter
AMS56_RS11435	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMS56_RS11480	COG4964	Belongs to the GSP D family
AMS56_RS11500	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMS56_RS11505	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AMS56_RS11520	COG0477	Major facilitator Superfamily
AMS56_RS11525	COG2719	SpoVR family
AMS56_RS11530	COG2718	Belongs to the UPF0229 family
AMS56_RS11535	COG2766	serine protein kinase
AMS56_RS11540	COG0840	transmembrane signaling receptor activity
AMS56_RS11545	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMS56_RS11550	COG1609	Transcriptional regulator
AMS56_RS11555	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMS56_RS11560	COG1129	ABC transporter
AMS56_RS11565	COG1879	ABC-type sugar transport system periplasmic component
AMS56_RS11570	COG0583	DNA-binding transcription factor activity
AMS56_RS11575	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AMS56_RS11580	COG4208	sulfate ABC transporter
AMS56_RS11585	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AMS56_RS11590	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AMS56_RS11630	COG0701	Predicted permease
AMS56_RS11635	COG0667	Aldo Keto reductase
AMS56_RS11660	COG1301	dicarboxylic acid transport
AMS56_RS11690	COG1116	anion transmembrane transporter activity
AMS56_RS11695	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMS56_RS11750	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMS56_RS11755	COG0765	amino acid transport
AMS56_RS11760	COG0673	inositol 2-dehydrogenase activity
AMS56_RS11765	COG1802	Transcriptional regulator
AMS56_RS11775	COG3023	N-Acetylmuramoyl-L-alanine amidase
AMS56_RS11785	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMS56_RS11790	COG0557	exoribonuclease II activity
AMS56_RS11805	COG0840	transmembrane signaling receptor activity
AMS56_RS11815	COG3547	Transposase (IS116 IS110 IS902 family)
AMS56_RS11835	COG0519	Catalyzes the synthesis of GMP from XMP
AMS56_RS11845	COG2814	Major facilitator Superfamily
AMS56_RS11855	COG0318	PFAM AMP-dependent synthetase and ligase
AMS56_RS11925	COG4964	Belongs to the GSP D family
AMS56_RS11980	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMS56_RS11985	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMS56_RS11990	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMS56_RS11995	COG0567	Dehydrogenase, E1 component
AMS56_RS12000	COG1217	gtp-binding protein TYPA
AMS56_RS12005	COG1846	Transcriptional regulator
AMS56_RS12015	COG1566	PFAM secretion protein HlyD family protein
AMS56_RS12020	COG2814	Major facilitator Superfamily
AMS56_RS12025	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMS56_RS12040	COG2251	uridine kinase activity
AMS56_RS12040	COG0195	Participates in both transcription termination and antitermination
AMS56_RS12050	COG1187	pseudouridine synthase activity
AMS56_RS12055	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AMS56_RS12060	COG0583	DNA-binding transcription factor activity
AMS56_RS12100	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
AMS56_RS12120	COG2755	lipolytic protein G-D-S-L family
AMS56_RS12120	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMS56_RS12135	COG0776	regulation of translation
AMS56_RS12140	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMS56_RS12140	COG0072	phenylalanine-tRNA ligase activity
AMS56_RS12160	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMS56_RS12175	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMS56_RS12180	COG0251	oxidation-reduction process
AMS56_RS12185	COG2267	carboxylic ester hydrolase activity
AMS56_RS12195	COG0583	DNA-binding transcription factor activity
AMS56_RS12210	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS12245	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS12260	COG2801	Transposase and inactivated derivatives
AMS56_RS12275	COG0477	Major facilitator Superfamily
AMS56_RS12290	COG1295	ribonuclease BN
AMS56_RS12305	COG0277	FAD linked oxidase domain protein
AMS56_RS12320	COG0583	DNA-binding transcription factor activity
AMS56_RS12345	COG0840	transmembrane signaling receptor activity
AMS56_RS12350	COG2223	nitrite transmembrane transporter activity
AMS56_RS12355	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AMS56_RS12360	COG0210	DNA helicase
AMS56_RS12365	COG0525	valine-tRNA ligase activity
AMS56_RS12370	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMS56_RS12380	COG5002	protein histidine kinase activity
AMS56_RS12390	COG0745	RESPONSE REGULATOR receiver
AMS56_RS12400	COG0425	Belongs to the sulfur carrier protein TusA family
AMS56_RS12405	COG0673	inositol 2-dehydrogenase activity
AMS56_RS12410	COG0673	inositol 2-dehydrogenase activity
AMS56_RS12425	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMS56_RS12440	COG3962	Belongs to the TPP enzyme family
AMS56_RS12450	COG3718	enzyme involved in inositol metabolism
AMS56_RS12460	COG0411	ABC transporter
AMS56_RS12470	COG0824	Thioesterase
AMS56_RS12485	COG2816	NAD+ diphosphatase activity
AMS56_RS12495	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMS56_RS12505	COG0477	Major facilitator Superfamily
AMS56_RS12520	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMS56_RS12530	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMS56_RS12535	COG0494	nUDIX hydrolase
AMS56_RS12555	COG1858	cytochrome C peroxidase
AMS56_RS12560	COG3511	phospholipase C
AMS56_RS12570	COG1566	PFAM secretion protein HlyD family protein
AMS56_RS12580	COG2814	Major facilitator Superfamily
AMS56_RS12585	COG1538	Outer membrane efflux protein
AMS56_RS12590	COG2197	response regulator
AMS56_RS12630	COG0583	DNA-binding transcription factor activity
AMS56_RS12635	COG2814	Major facilitator Superfamily
AMS56_RS12785	COG0457	Tetratricopeptide repeat
AMS56_RS12785	COG0859	PFAM glycosyl transferase family 9
AMS56_RS12830	COG0745	RESPONSE REGULATOR receiver
AMS56_RS12835	COG0583	DNA-binding transcription factor activity
AMS56_RS12870	COG0366	Alpha amylase catalytic
AMS56_RS12875	COG0366	Alpha amylase catalytic
AMS56_RS12880	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMS56_RS12920	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
AMS56_RS13040	COG4942	peptidase
AMS56_RS13045	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMS56_RS13055	COG0534	Mate efflux family protein
AMS56_RS13120	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AMS56_RS13135	COG0745	RESPONSE REGULATOR receiver
AMS56_RS13150	COG0581	inorganic phosphate transmembrane transporter activity
AMS56_RS13155	COG0573	inorganic phosphate transmembrane transporter activity
AMS56_RS13160	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AMS56_RS13170	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AMS56_RS13175	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMS56_RS13185	COG1534	Rna-binding protein
AMS56_RS13195	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMS56_RS13200	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AMS56_RS13210	COG0505	Belongs to the CarA family
AMS56_RS13240	COG1388	LysM domain
AMS56_RS13240	COG0741	lytic transglycosylase activity
AMS56_RS13245	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMS56_RS13250	COG2226	methyltransferase
AMS56_RS13255	COG0328	RNA-DNA hybrid ribonuclease activity
AMS56_RS13260	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMS56_RS13270	COG0477	Major facilitator Superfamily
AMS56_RS13290	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMS56_RS13300	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
AMS56_RS13320	COG3052	prosthetic group binding
AMS56_RS13340	COG0583	DNA-binding transcription factor activity
AMS56_RS13345	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMS56_RS13350	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
AMS56_RS13385	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMS56_RS13415	COG0583	DNA-binding transcription factor activity
AMS56_RS13435	COG1522	sequence-specific DNA binding
AMS56_RS13480	COG0582	viral genome integration into host DNA
AMS56_RS13515	COG1484	DNA-dependent DNA replication
AMS56_RS13565	COG2801	Transposase and inactivated derivatives
AMS56_RS13585	COG1609	Transcriptional regulator
AMS56_RS13590	COG1840	ABC-type Fe3 transport system, periplasmic component
AMS56_RS13595	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AMS56_RS13610	COG1177	transmembrane transport
AMS56_RS13615	COG3842	ATPase activity
AMS56_RS13620	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AMS56_RS13640	COG2814	Major facilitator Superfamily
AMS56_RS13645	COG0697	spore germination
AMS56_RS13655	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AMS56_RS13660	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
AMS56_RS13700	COG2200	EAL domain
AMS56_RS13710	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AMS56_RS13715	COG1074	ATP-dependent DNA helicase activity
AMS56_RS13720	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AMS56_RS13730	COG1289	transmembrane transporter activity
AMS56_RS13745	COG1840	ABC-type Fe3 transport system, periplasmic component
AMS56_RS13750	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMS56_RS13755	COG3842	ATPase activity
AMS56_RS13760	COG1522	sequence-specific DNA binding
AMS56_RS13775	COG1959	2 iron, 2 sulfur cluster binding
AMS56_RS13800	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMS56_RS13805	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMS56_RS13840	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMS56_RS13855	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMS56_RS13855	COG2010	Cytochrome c
AMS56_RS13860	COG2863	cytochrome
AMS56_RS13880	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMS56_RS13890	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMS56_RS13910	COG0006	proline dipeptidase activity
AMS56_RS13960	COG2866	Carboxypeptidase
AMS56_RS13975	COG0436	Aminotransferase
AMS56_RS13985	COG1024	Enoyl-CoA hydratase
AMS56_RS13990	COG0588	phosphoglycerate mutase activity
AMS56_RS14000	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS14015	COG1012	belongs to the aldehyde dehydrogenase family
AMS56_RS14015	COG2030	dehydratase
AMS56_RS14020	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS14025	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS14045	COG1007	ATP synthesis coupled electron transport
AMS56_RS14080	COG1034	ATP synthesis coupled electron transport
AMS56_RS14090	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AMS56_RS14125	COG0149	triose-phosphate isomerase activity
AMS56_RS14130	COG4221	oxidoreductase activity
AMS56_RS14130	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMS56_RS14130	COG3321	synthase
AMS56_RS14130	COG0604	alcohol dehydrogenase
AMS56_RS14145	COG0683	leucine binding
AMS56_RS14160	COG0288	reversible hydration of carbon dioxide
AMS56_RS14165	COG0659	secondary active sulfate transmembrane transporter activity
AMS56_RS14175	COG1183	phosphatidylcholine synthase activity
AMS56_RS14195	COG0028	Belongs to the TPP enzyme family
AMS56_RS14225	COG0438	transferase activity, transferring glycosyl groups
AMS56_RS14245	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS14250	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMS56_RS14260	COG0154	amidase activity
AMS56_RS14270	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMS56_RS14300	COG3547	Transposase (IS116 IS110 IS902 family)
AMS56_RS14305	COG0745	RESPONSE REGULATOR receiver
AMS56_RS14310	COG2205	protein histidine kinase activity
AMS56_RS14325	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AMS56_RS14330	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AMS56_RS14350	COG1028	Short-chain dehydrogenase reductase Sdr
AMS56_RS14365	COG0151	Belongs to the GarS family
AMS56_RS14380	COG0799	negative regulation of ribosome biogenesis
AMS56_RS14400	COG2233	PERMEase
AMS56_RS14430	COG1595	DNA-templated transcription, initiation
AMS56_RS14435	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMS56_RS14465	COG0859	PFAM glycosyl transferase family 9
AMS56_RS14470	COG0438	transferase activity, transferring glycosyl groups
AMS56_RS14510	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMS56_RS14515	COG0513	Belongs to the DEAD box helicase family
AMS56_RS14545	COG1674	ftsk spoiiie
AMS56_RS14550	COG2706	6-phosphogluconolactonase activity
AMS56_RS14555	COG3387	PFAM Glycoside hydrolase 15-related
AMS56_RS14565	COG1309	transcriptional regulator
AMS56_RS14570	COG2878	Part of a membrane complex involved in electron transport
AMS56_RS14575	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AMS56_RS14610	COG3135	benzoate transporter
AMS56_RS14625	COG2764	glyoxalase bleomycin resistance protein dioxygenase
AMS56_RS14640	COG4106	trans-aconitate 2-methyltransferase activity
AMS56_RS14660	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMS56_RS14670	COG0697	spore germination
AMS56_RS14675	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMS56_RS14710	COG0477	Major facilitator Superfamily
AMS56_RS14715	COG0583	DNA-binding transcription factor activity
AMS56_RS14725	COG0583	DNA-binding transcription factor activity
AMS56_RS14750	COG0488	(ABC) transporter
AMS56_RS14760	COG1773	rubredoxin
AMS56_RS14840	COG1881	PFAM PEBP family protein
AMS56_RS14845	COG2814	Major facilitator Superfamily
AMS56_RS14865	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
AMS56_RS14885	COG1116	anion transmembrane transporter activity
AMS56_RS14890	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMS56_RS14915	COG1741	Belongs to the pirin family
AMS56_RS14925	COG4215	(ABC) transporter
AMS56_RS14945	COG0347	Belongs to the P(II) protein family
AMS56_RS14970	COG2827	Endonuclease containing a URI domain
AMS56_RS14975	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMS56_RS14990	COG2271	Major facilitator Superfamily
AMS56_RS15020	COG2226	methyltransferase
AMS56_RS15055	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMS56_RS15080	COG0489	protein tyrosine kinase activity
AMS56_RS15085	COG3047	cAMP biosynthetic process
AMS56_RS15085	COG2885	chlorophyll binding
AMS56_RS15105	COG2911	Protein conserved in bacteria
AMS56_RS15110	COG0729	surface antigen
AMS56_RS15120	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AMS56_RS15135	COG0489	protein tyrosine kinase activity
AMS56_RS15140	COG2259	Doxx family
AMS56_RS15145	COG1492	cobalamin metabolic process
AMS56_RS15155	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AMS56_RS15165	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AMS56_RS15180	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
AMS56_RS15185	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AMS56_RS15190	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
AMS56_RS15200	COG4206	TonB-dependent receptor
AMS56_RS15230	COG0583	DNA-binding transcription factor activity
AMS56_RS15240	COG4654	Cytochrome c, class I
AMS56_RS15260	COG0795	lipopolysaccharide-transporting ATPase activity
AMS56_RS15275	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AMS56_RS15275	COG1648	precorrin-2 dehydrogenase activity
AMS56_RS15280	COG2895	sulfate adenylyltransferase (ATP) activity
AMS56_RS15290	COG0175	sulfate reduction
AMS56_RS15305	COG0583	DNA-binding transcription factor activity
AMS56_RS15320	COG1396	sequence-specific DNA binding
AMS56_RS15330	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMS56_RS15335	COG2258	MOSC domain
AMS56_RS15340	COG2267	carboxylic ester hydrolase activity
AMS56_RS15350	COG0583	DNA-binding transcription factor activity
AMS56_RS15360	COG1187	pseudouridine synthase activity
AMS56_RS15375	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMS56_RS15375	COG0543	2 iron, 2 sulfur cluster binding
AMS56_RS15380	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMS56_RS15385	COG0456	acetyltransferase
AMS56_RS15425	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AMS56_RS15430	COG1047	Peptidyl-prolyl cis-trans
AMS56_RS15450	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
AMS56_RS15470	COG1511	domain protein
AMS56_RS15470	COG3264	Mechanosensitive ion channel
AMS56_RS15475	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMS56_RS15475	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMS56_RS15480	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMS56_RS15485	COG0196	riboflavin kinase activity
AMS56_RS15490	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AMS56_RS15520	COG1113	amino acid transport
AMS56_RS15525	COG0542	response to heat
AMS56_RS15535	COG1278	Cold shock
AMS56_RS15560	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMS56_RS15580	COG0656	L-ascorbic acid biosynthetic process
AMS56_RS15585	COG2188	Transcriptional regulator
AMS56_RS15605	COG2814	Major facilitator Superfamily
AMS56_RS15650	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMS56_RS15655	COG1570	exodeoxyribonuclease VII activity
AMS56_RS15660	COG1663	tetraacyldisaccharide 4'-kinase activity
AMS56_RS15690	COG0728	peptidoglycan biosynthetic process
AMS56_RS15705	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMS56_RS15710	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMS56_RS15725	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AMS56_RS15730	COG0318	PFAM AMP-dependent synthetase and ligase
AMS56_RS15735	COG4974	Belongs to the 'phage' integrase family
AMS56_RS15745	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMS56_RS15750	COG0802	atpase or kinase
AMS56_RS15755	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMS56_RS15765	COG1741	Belongs to the pirin family
AMS56_RS15770	COG3118	belongs to the thioredoxin family
AMS56_RS15775	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AMS56_RS15785	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMS56_RS15800	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMS56_RS15810	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMS56_RS15815	COG1522	sequence-specific DNA binding
AMS56_RS15835	COG2271	Major facilitator Superfamily
AMS56_RS15850	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMS56_RS15855	COG1012	belongs to the aldehyde dehydrogenase family
AMS56_RS15865	COG0583	DNA-binding transcription factor activity
AMS56_RS15870	COG0246	Mannitol dehydrogenase
AMS56_RS15875	COG1070	Carbohydrate kinase
AMS56_RS15880	COG2390	Transcriptional regulator
AMS56_RS15895	COG0583	DNA-binding transcription factor activity
AMS56_RS15905	COG3842	ATPase activity
AMS56_RS15910	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMS56_RS15920	COG1175	transmembrane transport
AMS56_RS15935	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMS56_RS15945	COG0735	belongs to the Fur family
AMS56_RS15955	COG1121	(ABC) transporter
AMS56_RS15960	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AMS56_RS15965	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AMS56_RS15980	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AMS56_RS15985	COG2233	PERMEase
AMS56_RS15995	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMS56_RS16000	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMS56_RS16025	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMS56_RS16060	COG0009	L-threonylcarbamoyladenylate synthase
AMS56_RS16065	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AMS56_RS16070	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AMS56_RS16075	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AMS56_RS16085	COG0469	pyruvate kinase activity
AMS56_RS16090	COG0126	phosphoglycerate kinase activity
AMS56_RS16115	COG0859	PFAM glycosyl transferase family 9
AMS56_RS16125	COG0429	hydrolase of the alpha beta-hydrolase fold
AMS56_RS16135	COG4783	chaperone-mediated protein folding
AMS56_RS16155	COG3307	-O-antigen
AMS56_RS16160	COG4969	Belongs to the N-Me-Phe pilin family
AMS56_RS16165	COG0861	Integral membrane protein TerC family
AMS56_RS16170	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AMS56_RS16185	COG2137	regulation of response to DNA damage stimulus
AMS56_RS16190	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMS56_RS16265	COG2801	Transposase and inactivated derivatives
AMS56_RS16290	COG5002	protein histidine kinase activity
AMS56_RS16290	COG0784	Response regulator, receiver
AMS56_RS16295	COG0583	DNA-binding transcription factor activity
AMS56_RS16335	COG0028	Belongs to the TPP enzyme family
AMS56_RS16340	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMS56_RS16345	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMS56_RS16415	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
AMS56_RS16420	COG0583	DNA-binding transcription factor activity
AMS56_RS16440	COG0840	transmembrane signaling receptor activity
AMS56_RS16480	COG3547	Transposase (IS116 IS110 IS902 family)
AMS56_RS16485	COG4948	Mandelate Racemase Muconate Lactonizing
AMS56_RS16505	COG0513	Belongs to the DEAD box helicase family
AMS56_RS16545	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AMS56_RS16550	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMS56_RS16560	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMS56_RS16565	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMS56_RS16570	COG0367	asparagine synthase
AMS56_RS16585	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMS56_RS16595	COG1396	sequence-specific DNA binding
AMS56_RS16600	COG2814	Major facilitator Superfamily
AMS56_RS16605	COG0583	DNA-binding transcription factor activity
AMS56_RS16615	COG1702	phosphate starvation-inducible protein PhoH
AMS56_RS16625	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
AMS56_RS16635	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AMS56_RS16640	COG0752	glycyl-tRNA synthetase alpha subunit
AMS56_RS16645	COG0751	glycine-tRNA ligase activity
AMS56_RS16650	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMS56_RS16655	COG0204	Acyl-transferase
AMS56_RS16680	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AMS56_RS16700	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMS56_RS16710	COG5265	(ABC) transporter
AMS56_RS16725	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AMS56_RS16730	COG1024	Enoyl-CoA hydratase
AMS56_RS16735	COG0183	Belongs to the thiolase family
AMS56_RS16740	COG1024	Enoyl-CoA hydratase
AMS56_RS16740	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMS56_RS16745	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS16760	COG0494	nUDIX hydrolase
AMS56_RS16825	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMS56_RS16835	COG0251	oxidation-reduction process
AMS56_RS16840	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
AMS56_RS16865	COG0477	Major facilitator Superfamily
AMS56_RS16895	COG1596	polysaccharide export
AMS56_RS16900	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AMS56_RS16915	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMS56_RS16925	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AMS56_RS16945	COG2204	response regulator
AMS56_RS16980	COG5002	protein histidine kinase activity
AMS56_RS16980	COG5001	Diguanylate cyclase
AMS56_RS16985	COG0235	Class ii aldolase
AMS56_RS17120	COG2801	Transposase and inactivated derivatives
AMS56_RS17135	COG2963	transposase activity
AMS56_RS17140	COG2801	Transposase and inactivated derivatives
AMS56_RS17145	COG0629	single-stranded DNA binding
AMS56_RS17150	COG2814	Major facilitator Superfamily
AMS56_RS17175	COG1280	lysine exporter protein (LysE YggA)
AMS56_RS17195	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AMS56_RS17210	COG1137	ATPase activity
AMS56_RS17215	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AMS56_RS17220	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AMS56_RS17245	COG1194	a g-specific adenine glycosylase
AMS56_RS17260	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AMS56_RS17275	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMS56_RS17295	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AMS56_RS17305	COG0742	ribosomal rna small subunit methyltransferase
AMS56_RS17315	COG0625	glutathione transferase activity
AMS56_RS17325	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMS56_RS17335	COG0243	molybdopterin cofactor binding
AMS56_RS17340	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMS56_RS17350	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMS56_RS17360	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AMS56_RS17365	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMS56_RS17380	COG1294	oxidase, subunit
AMS56_RS17400	COG1263	PTS System
AMS56_RS17400	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AMS56_RS17400	COG2190	(PTS) system
AMS56_RS17405	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMS56_RS17405	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMS56_RS17410	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMS56_RS17415	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AMS56_RS17420	COG2188	Transcriptional regulator
AMS56_RS17425	COG0583	DNA-binding transcription factor activity
AMS56_RS17470	COG0318	PFAM AMP-dependent synthetase and ligase
AMS56_RS17480	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS17490	COG2226	methyltransferase
AMS56_RS17500	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
AMS56_RS17525	COG2814	Major facilitator Superfamily
AMS56_RS17535	COG0587	DNA-directed DNA polymerase activity
AMS56_RS17550	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
AMS56_RS17570	COG0840	transmembrane signaling receptor activity
AMS56_RS17580	COG1999	signal sequence binding
AMS56_RS17590	COG1612	heme a metabolic process
AMS56_RS17620	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AMS56_RS17630	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMS56_RS17645	COG2226	methyltransferase
AMS56_RS17650	COG1040	competence protein
AMS56_RS17660	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
AMS56_RS17680	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMS56_RS17690	COG0793	Belongs to the peptidase S41A family
AMS56_RS17695	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMS56_RS17700	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMS56_RS17705	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMS56_RS17715	COG0189	ligase activity
AMS56_RS17725	COG0004	ammonium transporteR
AMS56_RS17735	COG2960	long-chain fatty acid transporting porin activity
AMS56_RS17765	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMS56_RS17775	COG4191	Histidine kinase
AMS56_RS17785	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMS56_RS17795	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMS56_RS17800	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS17805	COG1960	acyl-CoA dehydrogenase activity
AMS56_RS17810	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMS56_RS17810	COG1024	Enoyl-CoA hydratase
AMS56_RS17815	COG0583	DNA-binding transcription factor activity
AMS56_RS17855	COG0583	DNA-binding transcription factor activity
AMS56_RS17860	COG2921	Belongs to the UPF0250 family
AMS56_RS17870	COG1686	Belongs to the peptidase S11 family
AMS56_RS17900	COG1127	ABC transporter
AMS56_RS17905	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMS56_RS17910	COG0737	Belongs to the 5'-nucleotidase family
AMS56_RS17925	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AMS56_RS17935	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AMS56_RS17955	COG1024	Enoyl-CoA hydratase
AMS56_RS18340	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMS56_RS18945	COG4695	Portal protein
AMS56_RS19100	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMS56_RS19190	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMS56_RS19925	COG0436	Aminotransferase
AMS56_RS19990	COG4303	Ethanolamine ammonia lyase large subunit
AMS56_RS20405	COG0643	Histidine kinase
AMS56_RS20405	COG2198	Histidine kinase
AMS56_RS20975	COG0067	glutamate synthase
AMS56_RS20975	COG0069	glutamate synthase activity
AMS56_RS20975	COG0070	glutamate synthase
AMS56_RS20980	COG0067	glutamate synthase
AMS56_RS20980	COG0070	glutamate synthase
AMS56_RS20980	COG0069	glutamate synthase activity
AMS56_RS21155	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMS56_RS21160	COG2857	Cytochrome c1
AMS56_RS21460	COG0006	proline dipeptidase activity
AMS56_RS21570	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AMS56_RS22545	COG3627	carbon phosphorus lyase activity
AMS56_RS22565	COG3639	organic phosphonate transmembrane transporter activity
AMS56_RS22580	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AMS56_RS24065	COG0546	phosphoglycolate phosphatase activity
AMS56_RS24105	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMS56_RS24350	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMS56_RS24585	COG3829	transcription factor binding
AMS56_RS24700	COG0596	Alpha beta hydrolase
AMS56_RS24960	COG0415	Belongs to the DNA photolyase family
AMS56_RS25160	COG1643	Atp-dependent helicase
AMS56_RS25175	COG1643	Atp-dependent helicase
AMS56_RS25190	COG1643	Atp-dependent helicase
AMS56_RS25400	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMS56_RS25565	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMS56_RS25760	COG0243	molybdopterin cofactor binding
AMS56_RS25875	COG0477	Major facilitator Superfamily
AMS56_RS26050	COG0750	zinc metalloprotease
AMS56_RS26540	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMS56_RS26540	COG0047	phosphoribosylformylglycinamidine synthase activity
AMS56_RS26680	COG3960	tartronate-semialdehyde synthase activity
AMS56_RS26685	COG3960	tartronate-semialdehyde synthase activity
AMS56_RS26755	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AMS56_RS26855	COG0534	Mate efflux family protein
AMS56_RS27070	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMS56_RS27115	COG0183	Belongs to the thiolase family
AMS56_RS27165	COG0488	(ABC) transporter
AMS56_RS27185	COG2070	2-Nitropropane dioxygenase
AMS56_RS27210	COG3842	ATPase activity
AMS56_RS27385	COG1196	nuclear chromosome segregation
AMS56_RS27385	COG3264	Mechanosensitive ion channel
AMS56_RS27560	COG1012	belongs to the aldehyde dehydrogenase family
AMS56_RS27590	COG3842	ATPase activity
AMS56_RS27875	COG0318	PFAM AMP-dependent synthetase and ligase
AMS56_RS27985	COG1174	glycine betaine transport
AMS56_RS28440	COG1122	ATPase activity
AMS56_RS28815	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMS56_RS28815	COG2755	lipolytic protein G-D-S-L family
AMS56_RS29020	COG0210	DNA helicase
AMS56_RS29030	COG0525	valine-tRNA ligase activity
AMS56_RS29105	COG3962	Belongs to the TPP enzyme family
AMS56_RS29805	COG0534	Mate efflux family protein
AMS56_RS29925	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AMS56_RS29930	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AMS56_RS29955	COG0505	Belongs to the CarA family
AMS56_RS30070	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
AMS56_RS30140	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMS56_RS30250	COG1840	ABC-type Fe3 transport system, periplasmic component
AMS56_RS30350	COG2200	EAL domain
AMS56_RS30370	COG1074	ATP-dependent DNA helicase activity