locus-tag class description JE55_RS00010 PF01053 Cys/Met metabolism PLP-dependent enzyme JE55_RS00020 PF02803 Thiolase, C-terminal domain JE55_RS00020 PF00108 Thiolase, N-terminal domain JE55_RS00025 PF00294 pfkB family carbohydrate kinase JE55_RS00030 PF04055 Radical SAM superfamily JE55_RS00030 PF18693 TRAM domain JE55_RS00030 PF00919 Uncharacterized protein family UPF0004 JE55_RS00035 PF05233 PHB accumulation regulatory domain JE55_RS00035 PF07879 PHB/PHA accumulation regulator DNA-binding domain JE55_RS00040 PF00106 short chain dehydrogenase JE55_RS00045 PF02803 Thiolase, C-terminal domain JE55_RS00045 PF00108 Thiolase, N-terminal domain JE55_RS00050 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JE55_RS00055 PF02578 Multi-copper polyphenol oxidoreductase laccase JE55_RS00060 PF01479 S4 domain JE55_RS00060 PF00849 RNA pseudouridylate synthase JE55_RS00065 PF13525 Outer membrane lipoprotein JE55_RS00070 PF13307 Helicase C-terminal domain JE55_RS00070 PF04851 Type III restriction enzyme, res subunit JE55_RS00085 PF16921 Tex protein YqgF-like domain JE55_RS00085 PF09371 Tex-like protein N-terminal domain JE55_RS00085 PF00575 S1 RNA binding domain JE55_RS00085 PF17674 HHH domain JE55_RS00090 PF02705 K+ potassium transporter JE55_RS00095 PF00156 Phosphoribosyl transferase domain JE55_RS00100 PF00709 Adenylosuccinate synthetase JE55_RS00105 PF13393 Histidyl-tRNA synthetase JE55_RS00115 PF01145 SPFH domain / Band 7 family JE55_RS00120 PF01145 SPFH domain / Band 7 family JE55_RS00120 PF12221 Bacterial membrane protein N terminal JE55_RS00125 PF13167 GTP-binding GTPase N-terminal JE55_RS00125 PF16360 GTP-binding GTPase Middle Region JE55_RS00125 PF01926 50S ribosome-binding GTPase JE55_RS00130 PF17209 Hfq protein JE55_RS00135 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JE55_RS00135 PF01926 50S ribosome-binding GTPase JE55_RS00140 PF13360 PQQ-like domain JE55_RS00145 PF09976 Tetratricopeptide repeat-like domain JE55_RS00150 PF13393 Histidyl-tRNA synthetase JE55_RS00150 PF03129 Anticodon binding domain JE55_RS00155 PF04551 GcpE protein JE55_RS00165 PF04055 Radical SAM superfamily JE55_RS00170 PF00334 Nucleoside diphosphate kinase JE55_RS00175 PF01027 Inhibitor of apoptosis-promoting Bax1 JE55_RS00180 PF05958 tRNA (Uracil-5-)-methyltransferase JE55_RS00200 PF04542 Sigma-70 region 2 JE55_RS00200 PF04545 Sigma-70, region 4 JE55_RS00200 PF04539 Sigma-70 region 3 JE55_RS00200 PF00140 Sigma-70 factor, region 1.2 JE55_RS00205 PF01476 LysM domain JE55_RS00205 PF01551 Peptidase family M23 JE55_RS00215 PF01975 Survival protein SurE JE55_RS00220 PF02515 CoA-transferase family III JE55_RS00225 PF02132 RecR protein JE55_RS00225 PF13662 Toprim domain JE55_RS00230 PF02575 YbaB/EbfC DNA-binding family JE55_RS00235 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JE55_RS00235 PF12170 DNA polymerase III tau subunit V interacting with alpha JE55_RS00235 PF12169 DNA polymerase III subunits gamma and tau domain III JE55_RS00240 PF00085 Thioredoxin JE55_RS00250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JE55_RS00250 PF07497 Rho termination factor, RNA-binding domain JE55_RS00250 PF07498 Rho termination factor, N-terminal domain JE55_RS00255 PF13411 MerR HTH family regulatory protein JE55_RS00260 PF07690 Major Facilitator Superfamily JE55_RS00265 PF06167 Glucose-regulated metallo-peptidase M90 JE55_RS00270 PF01197 Ribosomal protein L31 JE55_RS00280 PF01554 MatE JE55_RS00305 PF10431 C-terminal, D2-small domain, of ClpB protein JE55_RS00305 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS00305 PF07724 AAA domain (Cdc48 subfamily) JE55_RS00305 PF17871 AAA lid domain JE55_RS00305 PF02861 Clp amino terminal domain, pathogenicity island component JE55_RS00310 PF02082 Transcriptional regulator JE55_RS00315 PF01152 Bacterial-like globin JE55_RS00320 PF02391 MoaE protein JE55_RS00325 PF02597 ThiS family JE55_RS00330 PF03453 MoeA N-terminal region (domain I and II) JE55_RS00330 PF03454 MoeA C-terminal region (domain IV) JE55_RS00330 PF00994 Probable molybdopterin binding domain JE55_RS00335 PF00291 Pyridoxal-phosphate dependent enzyme JE55_RS00335 PF14821 Threonine synthase N terminus JE55_RS00340 PF01842 ACT domain JE55_RS00340 PF03447 Homoserine dehydrogenase, NAD binding domain JE55_RS00340 PF00742 Homoserine dehydrogenase JE55_RS00345 PF00155 Aminotransferase class I and II JE55_RS00355 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JE55_RS00365 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JE55_RS00370 PF00535 Glycosyl transferase family 2 JE55_RS00375 PF00551 Formyl transferase JE55_RS00375 PF02911 Formyl transferase, C-terminal domain JE55_RS00375 PF01370 NAD dependent epimerase/dehydratase family JE55_RS00380 PF01370 NAD dependent epimerase/dehydratase family JE55_RS00380 PF02911 Formyl transferase, C-terminal domain JE55_RS00380 PF00551 Formyl transferase JE55_RS00385 PF01522 Polysaccharide deacetylase JE55_RS00390 PF00578 AhpC/TSA family JE55_RS00395 PF13638 PIN domain JE55_RS00395 PF02562 PhoH-like protein JE55_RS00400 PF00877 NlpC/P60 family JE55_RS00405 PF01384 Phosphate transporter family JE55_RS00415 PF03796 DnaB-like helicase C terminal domain JE55_RS00415 PF00772 DnaB-like helicase N terminal domain JE55_RS00420 PF01281 Ribosomal protein L9, N-terminal domain JE55_RS00420 PF03948 Ribosomal protein L9, C-terminal domain JE55_RS00425 PF01084 Ribosomal protein S18 JE55_RS00435 PF01250 Ribosomal protein S6 JE55_RS00445 PF08281 Sigma-70, region 4 JE55_RS00445 PF04542 Sigma-70 region 2 JE55_RS00460 PF03466 LysR substrate binding domain JE55_RS00460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS00465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JE55_RS00465 PF00205 Thiamine pyrophosphate enzyme, central domain JE55_RS00465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JE55_RS00470 PF01261 Xylose isomerase-like TIM barrel JE55_RS00475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JE55_RS00475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JE55_RS00480 PF01476 LysM domain JE55_RS00480 PF04972 BON domain JE55_RS00490 PF17763 Glutaminase/Asparaginase C-terminal domain JE55_RS00490 PF00710 Asparaginase, N-terminal JE55_RS00515 PF00534 Glycosyl transferases group 1 JE55_RS00515 PF13439 Glycosyltransferase Family 4 JE55_RS00520 PF02463 RecF/RecN/SMC N terminal domain JE55_RS00540 PF01026 TatD related DNase JE55_RS00545 PF00583 Acetyltransferase (GNAT) family JE55_RS00550 PF09115 DNA polymerase III, delta subunit, C terminal JE55_RS00555 PF02223 Thymidylate kinase JE55_RS00560 PF02618 YceG-like family JE55_RS00565 PF01571 Aminomethyltransferase folate-binding domain JE55_RS00575 PF13673 Acetyltransferase (GNAT) domain JE55_RS00580 PF07859 alpha/beta hydrolase fold JE55_RS00585 PF00107 Zinc-binding dehydrogenase JE55_RS00585 PF16884 N-terminal domain of oxidoreductase JE55_RS00605 PF00108 Thiolase, N-terminal domain JE55_RS00605 PF02803 Thiolase, C-terminal domain JE55_RS00610 PF00857 Isochorismatase family JE55_RS00615 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JE55_RS00615 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS00615 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JE55_RS00620 PF00501 AMP-binding enzyme JE55_RS00620 PF13193 AMP-binding enzyme C-terminal domain JE55_RS00625 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JE55_RS00630 PF01641 SelR domain JE55_RS00635 PF04279 Intracellular septation protein A JE55_RS00640 PF01722 BolA-like protein JE55_RS00655 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JE55_RS00655 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JE55_RS00655 PF02769 AIR synthase related protein, C-terminal domain JE55_RS00665 PF01266 FAD dependent oxidoreductase JE55_RS00670 PF01256 Carbohydrate kinase JE55_RS00675 PF00342 Phosphoglucose isomerase JE55_RS00680 PF00005 ABC transporter JE55_RS00685 PF13472 GDSL-like Lipase/Acylhydrolase family JE55_RS00730 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS00730 PF02190 ATP-dependent protease La (LON) substrate-binding domain JE55_RS00730 PF05362 Lon protease (S16) C-terminal proteolytic domain JE55_RS00735 PF07724 AAA domain (Cdc48 subfamily) JE55_RS00735 PF10431 C-terminal, D2-small domain, of ClpB protein JE55_RS00735 PF06689 ClpX C4-type zinc finger JE55_RS00740 PF00574 Clp protease JE55_RS00745 PF05697 Bacterial trigger factor protein (TF) JE55_RS00745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JE55_RS00745 PF05698 Bacterial trigger factor protein (TF) C-terminus JE55_RS00750 PF02595 Glycerate kinase family JE55_RS00755 PF01047 MarR family JE55_RS00760 PF02558 Ketopantoate reductase PanE/ApbA JE55_RS00760 PF08546 Ketopantoate reductase PanE/ApbA C terminal JE55_RS00770 PF00267 Gram-negative porin JE55_RS00780 PF00850 Histone deacetylase domain JE55_RS00855 PF00486 Transcriptional regulatory protein, C terminal JE55_RS00855 PF00072 Response regulator receiver domain JE55_RS00860 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS00860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS00860 PF00672 HAMP domain JE55_RS00865 PF00578 AhpC/TSA family JE55_RS00870 PF02627 Carboxymuconolactone decarboxylase family JE55_RS00875 PF02542 YgbB family JE55_RS00880 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JE55_RS00885 PF03461 TRCF domain JE55_RS00885 PF02559 CarD-like/TRCF domain JE55_RS00885 PF00271 Helicase conserved C-terminal domain JE55_RS00885 PF00270 DEAD/DEAH box helicase JE55_RS00885 PF17757 UvrB interaction domain JE55_RS00900 PF01546 Peptidase family M20/M25/M40 JE55_RS00900 PF07687 Peptidase dimerisation domain JE55_RS00905 PF00291 Pyridoxal-phosphate dependent enzyme JE55_RS00920 PF00912 Transglycosylase JE55_RS00920 PF00905 Penicillin binding protein transpeptidase domain JE55_RS00920 PF17092 Penicillin-binding protein OB-like domain JE55_RS00935 PF01741 Large-conductance mechanosensitive channel, MscL JE55_RS00945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JE55_RS00945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JE55_RS00950 PF07311 Dodecin JE55_RS00955 PF03466 LysR substrate binding domain JE55_RS00955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS00960 PF01979 Amidohydrolase family JE55_RS00965 PF00576 HIUase/Transthyretin family JE55_RS00975 PF04115 Ureidoglycolate lyase JE55_RS00980 PF03561 Allantoicase repeat JE55_RS00985 PF01014 Uricase JE55_RS00985 PF09349 OHCU decarboxylase JE55_RS00995 PF01177 Asp/Glu/Hydantoin racemase JE55_RS01000 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JE55_RS01005 PF07729 FCD domain JE55_RS01005 PF00392 Bacterial regulatory proteins, gntR family JE55_RS01010 PF17676 LD-carboxypeptidase C-terminal domain JE55_RS01010 PF02016 LD-carboxypeptidase N-terminal domain JE55_RS01015 PF14437 MafB19-like deaminase JE55_RS01020 PF09350 Domain of unknown function (DUF1992) JE55_RS01030 PF07690 Major Facilitator Superfamily JE55_RS01035 PF00117 Glutamine amidotransferase class-I JE55_RS01035 PF02540 NAD synthase JE55_RS01035 PF00958 GMP synthase C terminal domain JE55_RS01045 PF00571 CBS domain JE55_RS01045 PF00478 IMP dehydrogenase / GMP reductase domain JE55_RS01065 PF00892 EamA-like transporter family JE55_RS01070 PF03658 RnfH family Ubiquitin JE55_RS01075 PF03364 Polyketide cyclase / dehydrase and lipid transport JE55_RS01080 PF01668 SmpB protein JE55_RS01085 PF16200 C-terminal region of band_7 JE55_RS01085 PF01145 SPFH domain / Band 7 family JE55_RS01095 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JE55_RS01095 PF00391 PEP-utilising enzyme, mobile domain JE55_RS01095 PF02896 PEP-utilising enzyme, TIM barrel domain JE55_RS01110 PF09286 Pro-kumamolisin, activation domain JE55_RS01110 PF00082 Subtilase family JE55_RS01115 PF03618 Kinase/pyrophosphorylase JE55_RS01120 PF08032 RNA 2'-O ribose methyltransferase substrate binding JE55_RS01120 PF00588 SpoU rRNA Methylase family JE55_RS01125 PF01351 Ribonuclease HII JE55_RS01130 PF02684 Lipid-A-disaccharide synthetase JE55_RS01135 PF00132 Bacterial transferase hexapeptide (six repeats) JE55_RS01135 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JE55_RS01140 PF07977 FabA-like domain JE55_RS01145 PF00132 Bacterial transferase hexapeptide (six repeats) JE55_RS01145 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JE55_RS01155 PF07244 Surface antigen variable number repeat JE55_RS01155 PF01103 Surface antigen JE55_RS01160 PF17820 PDZ domain JE55_RS01160 PF02163 Peptidase family M50 JE55_RS01165 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JE55_RS01165 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JE55_RS01165 PF13288 DXP reductoisomerase C-terminal domain JE55_RS01175 PF01255 Putative undecaprenyl diphosphate synthase JE55_RS01180 PF01765 Ribosome recycling factor JE55_RS01185 PF00696 Amino acid kinase family JE55_RS01190 PF00889 Elongation factor TS JE55_RS01195 PF00318 Ribosomal protein S2 JE55_RS01205 PF00557 Metallopeptidase family M24 JE55_RS01210 PF01966 HD domain JE55_RS01210 PF08335 GlnD PII-uridylyltransferase JE55_RS01210 PF01909 Nucleotidyltransferase domain JE55_RS01215 PF00849 RNA pseudouridylate synthase JE55_RS01215 PF01479 S4 domain JE55_RS01220 PF01327 Polypeptide deformylase JE55_RS01225 PF00533 BRCA1 C Terminus (BRCT) domain JE55_RS01225 PF01653 NAD-dependent DNA ligase adenylation domain JE55_RS01225 PF03120 NAD-dependent DNA ligase OB-fold domain JE55_RS01225 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JE55_RS01225 PF12826 Helix-hairpin-helix motif JE55_RS01240 PF06470 SMC proteins Flexible Hinge Domain JE55_RS01240 PF02463 RecF/RecN/SMC N terminal domain JE55_RS01250 PF00155 Aminotransferase class I and II JE55_RS01255 PF14602 Hexapeptide repeat of succinyl-transferase JE55_RS01255 PF00132 Bacterial transferase hexapeptide (six repeats) JE55_RS01255 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JE55_RS01260 PF03960 ArsC family JE55_RS01265 PF01546 Peptidase family M20/M25/M40 JE55_RS01265 PF07687 Peptidase dimerisation domain JE55_RS01270 PF05175 Methyltransferase small domain JE55_RS01280 PF13091 PLD-like domain JE55_RS01285 PF00255 Glutathione peroxidase JE55_RS01290 PF00005 ABC transporter JE55_RS01290 PF12848 ABC transporter JE55_RS01300 PF18073 Rubredoxin metal binding domain JE55_RS01305 PF00842 Alanine racemase, C-terminal domain JE55_RS01305 PF01168 Alanine racemase, N-terminal domain JE55_RS01310 PF07690 Major Facilitator Superfamily JE55_RS01315 PF08543 Phosphomethylpyrimidine kinase JE55_RS01330 PF03167 Uracil DNA glycosylase superfamily JE55_RS01340 PF00814 Glycoprotease family JE55_RS01350 PF00270 DEAD/DEAH box helicase JE55_RS01350 PF00271 Helicase conserved C-terminal domain JE55_RS01355 PF00463 Isocitrate lyase family JE55_RS01360 PF00582 Universal stress protein family JE55_RS01365 PF03466 LysR substrate binding domain JE55_RS01365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS01370 PF13419 Haloacid dehalogenase-like hydrolase JE55_RS01375 PF01274 Malate synthase JE55_RS01385 PF03737 Aldolase/RraA JE55_RS01390 PF12833 Helix-turn-helix domain JE55_RS01390 PF02311 AraC-like ligand binding domain JE55_RS01430 PF00749 tRNA synthetases class I (E and Q), catalytic domain JE55_RS01435 PF01734 Patatin-like phospholipase JE55_RS01440 PF00877 NlpC/P60 family JE55_RS01445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JE55_RS01445 PF00005 ABC transporter JE55_RS01450 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS01450 PF12911 N-terminal TM domain of oligopeptide transport permease C JE55_RS01455 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS01460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JE55_RS01480 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JE55_RS01480 PF00384 Molybdopterin oxidoreductase JE55_RS01480 PF01568 Molydopterin dinucleotide binding domain JE55_RS01490 PF00175 Oxidoreductase NAD-binding domain JE55_RS01490 PF00970 Oxidoreductase FAD-binding domain JE55_RS01495 PF06463 Molybdenum Cofactor Synthesis C JE55_RS01495 PF04055 Radical SAM superfamily JE55_RS01500 PF00037 4Fe-4S binding domain JE55_RS01500 PF11953 Domain of unknown function (DUF3470) JE55_RS01510 PF00557 Metallopeptidase family M24 JE55_RS01520 PF02655 ATP-grasp domain JE55_RS01520 PF00206 Lyase JE55_RS01525 PF00291 Pyridoxal-phosphate dependent enzyme JE55_RS01530 PF00009 Elongation factor Tu GTP binding domain JE55_RS01535 PF01507 Phosphoadenosine phosphosulfate reductase family JE55_RS01545 PF00266 Aminotransferase class-V JE55_RS01550 PF01757 Acyltransferase family JE55_RS01560 PF02780 Transketolase, C-terminal domain JE55_RS01560 PF02779 Transketolase, pyrimidine binding domain JE55_RS01565 PF00456 Transketolase, thiamine diphosphate binding domain JE55_RS01565 PF02779 Transketolase, pyrimidine binding domain JE55_RS01565 PF02780 Transketolase, C-terminal domain JE55_RS01585 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JE55_RS01595 PF00668 Condensation domain JE55_RS01595 PF00550 Phosphopantetheine attachment site JE55_RS01595 PF13193 AMP-binding enzyme C-terminal domain JE55_RS01595 PF00501 AMP-binding enzyme JE55_RS01610 PF00501 AMP-binding enzyme JE55_RS01610 PF13193 AMP-binding enzyme C-terminal domain JE55_RS01610 PF00668 Condensation domain JE55_RS01610 PF00975 Thioesterase domain JE55_RS01610 PF00550 Phosphopantetheine attachment site JE55_RS01615 PF00009 Elongation factor Tu GTP binding domain JE55_RS01625 PF13533 Biotin-lipoyl like JE55_RS01630 PF00873 AcrB/AcrD/AcrF family JE55_RS01660 PF01842 ACT domain JE55_RS01660 PF00696 Amino acid kinase family JE55_RS01660 PF13840 ACT domain JE55_RS01665 PF09179 TilS substrate binding domain JE55_RS01665 PF01171 PP-loop family JE55_RS01665 PF11734 TilS substrate C-terminal domain JE55_RS01670 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JE55_RS01680 PF01406 tRNA synthetases class I (C) catalytic domain JE55_RS01680 PF09190 DALR domain JE55_RS01690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JE55_RS01695 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JE55_RS01700 PF00149 Calcineurin-like phosphoesterase JE55_RS01705 PF00132 Bacterial transferase hexapeptide (six repeats) JE55_RS01710 PF00588 SpoU rRNA Methylase family JE55_RS01715 PF00459 Inositol monophosphatase family JE55_RS01735 PF12728 Helix-turn-helix domain JE55_RS01820 PF17482 Phage tail sheath C-terminal domain JE55_RS01820 PF04984 Phage tail sheath protein subtilisin-like domain JE55_RS01885 PF00574 Clp protease JE55_RS01985 PF01624 MutS domain I JE55_RS01985 PF05190 MutS family domain IV JE55_RS01985 PF05192 MutS domain III JE55_RS01985 PF00488 MutS domain V JE55_RS01985 PF05188 MutS domain II JE55_RS01995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JE55_RS02000 PF08007 Cupin superfamily protein JE55_RS02005 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JE55_RS02005 PF10996 Beta-Casp domain JE55_RS02005 PF00753 Metallo-beta-lactamase superfamily JE55_RS02010 PF06804 NlpB/DapX lipoprotein JE55_RS02015 PF00701 Dihydrodipicolinate synthetase family JE55_RS02025 PF00579 tRNA synthetases class I (W and Y) JE55_RS02030 PF02163 Peptidase family M50 JE55_RS02035 PF01300 Telomere recombination JE55_RS02040 PF02811 PHP domain JE55_RS02045 PF00561 alpha/beta hydrolase fold JE55_RS02050 PF04305 Protein of unknown function (DUF455) JE55_RS02055 PF00132 Bacterial transferase hexapeptide (six repeats) JE55_RS02060 PF01430 Hsp33 protein JE55_RS02070 PF04977 Septum formation initiator JE55_RS02075 PF03952 Enolase, N-terminal domain JE55_RS02075 PF00113 Enolase, C-terminal TIM barrel domain JE55_RS02080 PF00793 DAHP synthetase I family JE55_RS02085 PF06418 CTP synthase N-terminus JE55_RS02085 PF00117 Glutamine amidotransferase class-I JE55_RS02090 PF08386 TAP-like protein JE55_RS02090 PF00561 alpha/beta hydrolase fold JE55_RS02095 PF03772 Competence protein JE55_RS02095 PF00753 Metallo-beta-lactamase superfamily JE55_RS02100 PF01026 TatD related DNase JE55_RS02105 PF00005 ABC transporter JE55_RS02110 PF02687 FtsX-like permease family JE55_RS02110 PF12704 MacB-like periplasmic core domain JE55_RS02120 PF02272 DHHA1 domain JE55_RS02120 PF17768 RecJ OB domain JE55_RS02120 PF01368 DHH family JE55_RS02125 PF03462 PCRF domain JE55_RS02125 PF00472 RF-1 domain JE55_RS02130 PF00152 tRNA synthetases class II (D, K and N) JE55_RS02130 PF01336 OB-fold nucleic acid binding domain JE55_RS02140 PF04384 Iron-sulphur cluster assembly JE55_RS02145 PF00111 2Fe-2S iron-sulfur cluster binding domain JE55_RS02150 PF00012 Hsp70 protein JE55_RS02155 PF07743 HSCB C-terminal oligomerisation domain JE55_RS02160 PF01521 Iron-sulphur cluster biosynthesis JE55_RS02165 PF01592 NifU-like N terminal domain JE55_RS02170 PF00266 Aminotransferase class-V JE55_RS02175 PF02082 Transcriptional regulator JE55_RS02180 PF01451 Low molecular weight phosphotyrosine protein phosphatase JE55_RS02190 PF11870 Domain of unknown function (DUF3390) JE55_RS02190 PF13183 4Fe-4S dicluster domain JE55_RS02190 PF02589 LUD domain JE55_RS02195 PF02754 Cysteine-rich domain JE55_RS02200 PF09339 IclR helix-turn-helix domain JE55_RS02200 PF01614 Bacterial transcriptional regulator JE55_RS02205 PF00768 D-alanyl-D-alanine carboxypeptidase JE55_RS02210 PF09361 Phasin protein JE55_RS02215 PF07992 Pyridine nucleotide-disulphide oxidoreductase JE55_RS02215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JE55_RS02220 PF02817 e3 binding domain JE55_RS02220 PF00364 Biotin-requiring enzyme JE55_RS02220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JE55_RS02225 PF17831 Pyruvate dehydrogenase E1 component middle domain JE55_RS02225 PF00456 Transketolase, thiamine diphosphate binding domain JE55_RS02230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS02230 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS02230 PF00989 PAS fold JE55_RS02235 PF00196 Bacterial regulatory proteins, luxR family JE55_RS02235 PF00072 Response regulator receiver domain JE55_RS02240 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JE55_RS02240 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JE55_RS02245 PF01432 Peptidase family M3 JE55_RS02250 PF11799 impB/mucB/samB family C-terminal domain JE55_RS02250 PF00817 impB/mucB/samB family JE55_RS02260 PF07690 Major Facilitator Superfamily JE55_RS02265 PF07690 Major Facilitator Superfamily JE55_RS02270 PF14710 Respiratory nitrate reductase alpha N-terminal JE55_RS02270 PF00384 Molybdopterin oxidoreductase JE55_RS02270 PF01568 Molydopterin dinucleotide binding domain JE55_RS02275 PF14711 Respiratory nitrate reductase beta C-terminal JE55_RS02275 PF13247 4Fe-4S dicluster domain JE55_RS02280 PF02613 Nitrate reductase delta subunit JE55_RS02285 PF02665 Nitrate reductase gamma subunit JE55_RS02290 PF07730 Histidine kinase JE55_RS02295 PF00072 Response regulator receiver domain JE55_RS02295 PF00196 Bacterial regulatory proteins, luxR family JE55_RS02305 PF00072 Response regulator receiver domain JE55_RS02305 PF02954 Bacterial regulatory protein, Fis family JE55_RS02305 PF00158 Sigma-54 interaction domain JE55_RS02310 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS02310 PF00989 PAS fold JE55_RS02310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS02315 PF00120 Glutamine synthetase, catalytic domain JE55_RS02315 PF03951 Glutamine synthetase, beta-Grasp domain JE55_RS02325 PF02464 Competence-damaged protein JE55_RS02325 PF18146 Damage-inducible protein CinA KH domain JE55_RS02325 PF00994 Probable molybdopterin binding domain JE55_RS02345 PF11898 Domain of unknown function (DUF3418) JE55_RS02345 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JE55_RS02345 PF00270 DEAD/DEAH box helicase JE55_RS02345 PF00271 Helicase conserved C-terminal domain JE55_RS02345 PF04408 Helicase associated domain (HA2) JE55_RS02350 PF00583 Acetyltransferase (GNAT) family JE55_RS02350 PF00696 Amino acid kinase family JE55_RS02355 PF04362 Bacterial Fe(2+) trafficking JE55_RS02360 PF07690 Major Facilitator Superfamily JE55_RS02360 PF00083 Sugar (and other) transporter JE55_RS02365 PF02515 CoA-transferase family III JE55_RS02370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS02370 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS02370 PF18158 Adaptive response protein AidB N-terminal domain JE55_RS02375 PF03466 LysR substrate binding domain JE55_RS02375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS02395 PF00202 Aminotransferase class-III JE55_RS02400 PF00120 Glutamine synthetase, catalytic domain JE55_RS02405 PF07722 Peptidase C26 JE55_RS02430 PF01979 Amidohydrolase family JE55_RS02435 PF01979 Amidohydrolase family JE55_RS02445 PF17391 Urocanase N-terminal domain JE55_RS02445 PF17392 Urocanase C-terminal domain JE55_RS02445 PF01175 Urocanase Rossmann-like domain JE55_RS02450 PF07702 UTRA domain JE55_RS02450 PF00392 Bacterial regulatory proteins, gntR family JE55_RS02455 PF00221 Aromatic amino acid lyase JE55_RS02475 PF03472 Autoinducer binding domain JE55_RS02475 PF00196 Bacterial regulatory proteins, luxR family JE55_RS02485 PF00875 DNA photolyase JE55_RS02485 PF03441 FAD binding domain of DNA photolyase JE55_RS02490 PF00487 Fatty acid desaturase JE55_RS02495 PF00115 Cytochrome C and Quinol oxidase polypeptide I JE55_RS02500 PF01883 Iron-sulfur cluster assembly protein JE55_RS02530 PF08859 DGC domain JE55_RS02535 PF02036 SCP-2 sterol transfer family JE55_RS02540 PF01136 Peptidase family U32 JE55_RS02545 PF01136 Peptidase family U32 JE55_RS02560 PF00520 Ion transport protein JE55_RS02560 PF00027 Cyclic nucleotide-binding domain JE55_RS02565 PF04055 Radical SAM superfamily JE55_RS02565 PF06969 HemN C-terminal domain JE55_RS02570 PF02203 Tar ligand binding domain homologue JE55_RS02570 PF00672 HAMP domain JE55_RS02570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS02580 PF01458 Uncharacterized protein family (UPF0051) JE55_RS02585 PF00005 ABC transporter JE55_RS02595 PF00266 Aminotransferase class-V JE55_RS02600 PF01592 NifU-like N terminal domain JE55_RS02605 PF01883 Iron-sulfur cluster assembly protein JE55_RS02615 PF02082 Transcriptional regulator JE55_RS02630 PF06481 COX Aromatic Rich Motif JE55_RS02630 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JE55_RS02635 PF00115 Cytochrome C and Quinol oxidase polypeptide I JE55_RS02640 PF00510 Cytochrome c oxidase subunit III JE55_RS02645 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JE55_RS02655 PF00497 Bacterial extracellular solute-binding proteins, family 3 JE55_RS02665 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JE55_RS02670 PF04996 Succinylarginine dihydrolase JE55_RS02675 PF00171 Aldehyde dehydrogenase family JE55_RS02680 PF04958 Arginine N-succinyltransferase beta subunit JE55_RS02685 PF04958 Arginine N-succinyltransferase beta subunit JE55_RS02690 PF00202 Aminotransferase class-III JE55_RS02695 PF12833 Helix-turn-helix domain JE55_RS02700 PF00005 ABC transporter JE55_RS02705 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS02710 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS02725 PF04794 YdjC-like protein JE55_RS02740 PF00296 Luciferase-like monooxygenase JE55_RS02745 PF00561 alpha/beta hydrolase fold JE55_RS02750 PF08543 Phosphomethylpyrimidine kinase JE55_RS02760 PF05506 Domain of unknown function (DUF756) JE55_RS02760 PF04185 Phosphoesterase family JE55_RS02765 PF13458 Periplasmic binding protein JE55_RS02770 PF01266 FAD dependent oxidoreductase JE55_RS02785 PF13439 Glycosyltransferase Family 4 JE55_RS02785 PF00534 Glycosyl transferases group 1 JE55_RS02790 PF00005 ABC transporter JE55_RS02790 PF00664 ABC transporter transmembrane region JE55_RS02795 PF00982 Glycosyltransferase family 20 JE55_RS02800 PF02358 Trehalose-phosphatase JE55_RS02805 PF02630 SCO1/SenC JE55_RS02820 PF13673 Acetyltransferase (GNAT) domain JE55_RS02825 PF02678 Pirin JE55_RS02825 PF05726 Pirin C-terminal cupin domain JE55_RS02830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS02830 PF03466 LysR substrate binding domain JE55_RS02835 PF13185 GAF domain JE55_RS02985 PF09397 Ftsk gamma domain JE55_RS02985 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JE55_RS02985 PF01580 FtsK/SpoIIIE family JE55_RS02985 PF17854 FtsK alpha domain JE55_RS03070 PF01066 CDP-alcohol phosphatidyltransferase JE55_RS03075 PF08459 UvrC Helix-hairpin-helix N-terminal JE55_RS03075 PF02151 UvrB/uvrC motif JE55_RS03075 PF01541 GIY-YIG catalytic domain JE55_RS03085 PF08207 Elongation factor P (EF-P) KOW-like domain JE55_RS03085 PF09285 Elongation factor P, C-terminal JE55_RS03085 PF01132 Elongation factor P (EF-P) OB domain JE55_RS03090 PF00072 Response regulator receiver domain JE55_RS03090 PF00158 Sigma-54 interaction domain JE55_RS03090 PF02954 Bacterial regulatory protein, Fis family JE55_RS03095 PF00933 Glycosyl hydrolase family 3 N terminal domain JE55_RS03100 PF01648 4'-phosphopantetheinyl transferase superfamily JE55_RS03105 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JE55_RS03110 PF11967 Recombination protein O N terminal JE55_RS03110 PF02565 Recombination protein O C terminal JE55_RS03115 PF07650 KH domain JE55_RS03115 PF01926 50S ribosome-binding GTPase JE55_RS03120 PF14622 Ribonuclease-III-like JE55_RS03120 PF00035 Double-stranded RNA binding motif JE55_RS03125 PF10502 Signal peptidase, peptidase S26 JE55_RS03130 PF03144 Elongation factor Tu domain 2 JE55_RS03130 PF00009 Elongation factor Tu GTP binding domain JE55_RS03130 PF06421 GTP-binding protein LepA C-terminus JE55_RS03130 PF00679 Elongation factor G C-terminus JE55_RS03140 PF13180 PDZ domain JE55_RS03145 PF03888 MucB/RseB N-terminal domain JE55_RS03145 PF17188 MucB/RseB C-terminal domain JE55_RS03155 PF04542 Sigma-70 region 2 JE55_RS03155 PF08281 Sigma-70, region 4 JE55_RS03165 PF02801 Beta-ketoacyl synthase, C-terminal domain JE55_RS03165 PF00109 Beta-ketoacyl synthase, N-terminal domain JE55_RS03170 PF00550 Phosphopantetheine attachment site JE55_RS03180 PF00698 Acyl transferase domain JE55_RS03185 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JE55_RS03185 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JE55_RS03190 PF02504 Fatty acid synthesis protein JE55_RS03195 PF01783 Ribosomal L32p protein family JE55_RS03200 PF02620 Large ribosomal RNA subunit accumulation protein YceD JE55_RS03205 PF02545 Maf-like protein JE55_RS03210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JE55_RS03215 PF01343 Peptidase family S49 JE55_RS03225 PF13419 Haloacid dehalogenase-like hydrolase JE55_RS03230 PF01479 S4 domain JE55_RS03230 PF00849 RNA pseudouridylate synthase JE55_RS03235 PF00575 S1 RNA binding domain JE55_RS03235 PF12111 Polyribonucleotide phosphorylase C terminal JE55_RS03235 PF10150 Ribonuclease E/G family JE55_RS03240 PF06463 Molybdenum Cofactor Synthesis C JE55_RS03240 PF04055 Radical SAM superfamily JE55_RS03245 PF12804 MobA-like NTP transferase domain JE55_RS03250 PF03453 MoeA N-terminal region (domain I and II) JE55_RS03250 PF00994 Probable molybdopterin binding domain JE55_RS03250 PF03454 MoeA C-terminal region (domain IV) JE55_RS03265 PF02646 RmuC family JE55_RS03270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JE55_RS03270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JE55_RS03285 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JE55_RS03285 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JE55_RS03290 PF00037 4Fe-4S binding domain JE55_RS03290 PF11953 Domain of unknown function (DUF3470) JE55_RS03305 PF05981 CreA protein JE55_RS03325 PF01554 MatE JE55_RS03335 PF10415 Fumarase C C-terminus JE55_RS03335 PF00206 Lyase JE55_RS03340 PF03061 Thioesterase superfamily JE55_RS03360 PF00303 Thymidylate synthase JE55_RS03365 PF00072 Response regulator receiver domain JE55_RS03365 PF00158 Sigma-54 interaction domain JE55_RS03365 PF02954 Bacterial regulatory protein, Fis family JE55_RS03395 PF02954 Bacterial regulatory protein, Fis family JE55_RS03395 PF00158 Sigma-54 interaction domain JE55_RS03395 PF00072 Response regulator receiver domain JE55_RS03400 PF00186 Dihydrofolate reductase JE55_RS03410 PF01523 Putative modulator of DNA gyrase JE55_RS03415 PF04751 Protein of unknown function (DUF615) JE55_RS03420 PF00994 Probable molybdopterin binding domain JE55_RS03425 PF00929 Exonuclease JE55_RS03430 PF01435 Peptidase family M48 JE55_RS03435 PF03193 RsgA GTPase JE55_RS03445 PF17113 Regulatory signalling modulator protein AmpE JE55_RS03445 PF03186 CobD/Cbib protein JE55_RS03450 PF00293 NUDIX domain JE55_RS03460 PF01245 Ribosomal protein L19 JE55_RS03465 PF01746 tRNA (Guanine-1)-methyltransferase JE55_RS03470 PF05239 PRC-barrel domain JE55_RS03470 PF01782 RimM N-terminal domain JE55_RS03475 PF00886 Ribosomal protein S16 JE55_RS03480 PF07995 Glucose / Sorbosone dehydrogenase JE55_RS03495 PF01037 Lrp/AsnC ligand binding domain JE55_RS03500 PF01266 FAD dependent oxidoreductase JE55_RS03505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS03505 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS03505 PF12806 Acetyl-CoA dehydrogenase C-terminal like JE55_RS03505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS03510 PF00766 Electron transfer flavoprotein FAD-binding domain JE55_RS03510 PF01012 Electron transfer flavoprotein domain JE55_RS03515 PF01012 Electron transfer flavoprotein domain JE55_RS03520 PF03180 NLPA lipoprotein JE55_RS03525 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS03530 PF00005 ABC transporter JE55_RS03530 PF09383 NIL domain JE55_RS03535 PF12146 Serine aminopeptidase, S33 JE55_RS03540 PF00850 Histone deacetylase domain JE55_RS03545 PF13406 Transglycosylase SLT domain JE55_RS03550 PF00291 Pyridoxal-phosphate dependent enzyme JE55_RS03565 PF01370 NAD dependent epimerase/dehydratase family JE55_RS03570 PF00294 pfkB family carbohydrate kinase JE55_RS03575 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JE55_RS03575 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JE55_RS03575 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JE55_RS03580 PF18073 Rubredoxin metal binding domain JE55_RS03590 PF00216 Bacterial DNA-binding protein JE55_RS03595 PF00575 S1 RNA binding domain JE55_RS03600 PF02224 Cytidylate kinase JE55_RS03605 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JE55_RS03610 PF01817 Chorismate mutase type II JE55_RS03610 PF00800 Prephenate dehydratase JE55_RS03610 PF01842 ACT domain JE55_RS03615 PF00266 Aminotransferase class-V JE55_RS03625 PF03989 DNA gyrase C-terminal domain, beta-propeller JE55_RS03625 PF00521 DNA gyrase/topoisomerase IV, subunit A JE55_RS03630 PF00691 OmpA family JE55_RS03640 PF13419 Haloacid dehalogenase-like hydrolase JE55_RS03645 PF00398 Ribosomal RNA adenine dimethylase JE55_RS03655 PF12727 PBP superfamily domain JE55_RS03655 PF12728 Helix-turn-helix domain JE55_RS03665 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JE55_RS03665 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JE55_RS03665 PF10531 SLBB domain JE55_RS03670 PF00384 Molybdopterin oxidoreductase JE55_RS03670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JE55_RS03670 PF00037 4Fe-4S binding domain JE55_RS03670 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JE55_RS03670 PF01568 Molydopterin dinucleotide binding domain JE55_RS03680 PF01494 FAD binding domain JE55_RS03690 PF07690 Major Facilitator Superfamily JE55_RS03695 PF07722 Peptidase C26 JE55_RS03700 PF01425 Amidase JE55_RS03705 PF02600 Disulfide bond formation protein DsbB JE55_RS03715 PF00962 Adenosine/AMP deaminase JE55_RS03720 PF00860 Permease family JE55_RS03725 PF01979 Amidohydrolase family JE55_RS03735 PF01169 Uncharacterized protein family UPF0016 JE55_RS03745 PF01433 Peptidase family M1 domain JE55_RS03745 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JE55_RS03745 PF11940 Domain of unknown function (DUF3458) Ig-like fold JE55_RS03750 PF01717 Cobalamin-independent synthase, Catalytic domain JE55_RS03750 PF08267 Cobalamin-independent synthase, N-terminal domain JE55_RS03755 PF03466 LysR substrate binding domain JE55_RS03755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS03760 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JE55_RS03805 PF07715 TonB-dependent Receptor Plug Domain JE55_RS03805 PF00593 TonB dependent receptor JE55_RS03825 PF11490 DNA polymerase III polC-type N-terminus II JE55_RS03825 PF07733 Bacterial DNA polymerase III alpha NTPase domain JE55_RS03825 PF00929 Exonuclease JE55_RS03825 PF14480 DNA polymerase III polC-type N-terminus I JE55_RS03825 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JE55_RS03825 PF14579 Helix-hairpin-helix motif JE55_RS03825 PF02811 PHP domain JE55_RS03830 PF00313 'Cold-shock' DNA-binding domain JE55_RS03840 PF13609 Gram-negative porin JE55_RS03845 PF01272 Transcription elongation factor, GreA/GreB, C-term JE55_RS03845 PF03449 Transcription elongation factor, N-terminal JE55_RS03860 PF13291 ACT domain JE55_RS03860 PF04607 Region found in RelA / SpoT proteins JE55_RS03860 PF02824 TGS domain JE55_RS03865 PF01192 RNA polymerase Rpb6 JE55_RS03870 PF00625 Guanylate kinase JE55_RS03875 PF08340 Domain of unknown function (DUF1732) JE55_RS03875 PF03755 YicC-like family, N-terminal region JE55_RS03880 PF01138 3' exoribonuclease family, domain 1 JE55_RS03880 PF03725 3' exoribonuclease family, domain 2 JE55_RS03885 PF01725 Ham1 family JE55_RS03890 PF06969 HemN C-terminal domain JE55_RS03890 PF04055 Radical SAM superfamily JE55_RS03920 PF07690 Major Facilitator Superfamily JE55_RS03920 PF00083 Sugar (and other) transporter JE55_RS03930 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JE55_RS03935 PF00654 Voltage gated chloride channel JE55_RS03950 PF03776 Septum formation topological specificity factor MinE JE55_RS03955 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JE55_RS03960 PF05209 Septum formation inhibitor MinC, N-terminal domain JE55_RS03960 PF03775 Septum formation inhibitor MinC, C-terminal domain JE55_RS03985 PF02403 Seryl-tRNA synthetase N-terminal domain JE55_RS03985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JE55_RS03995 PF12002 MgsA AAA+ ATPase C terminal JE55_RS03995 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS03995 PF16193 AAA C-terminal domain JE55_RS04000 PF03548 Outer membrane lipoprotein carrier protein LolA JE55_RS04005 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JE55_RS04005 PF17854 FtsK alpha domain JE55_RS04005 PF09397 Ftsk gamma domain JE55_RS04005 PF01580 FtsK/SpoIIIE family JE55_RS04010 PF07992 Pyridine nucleotide-disulphide oxidoreductase JE55_RS04015 PF01713 Smr domain JE55_RS04015 PF00488 MutS domain V JE55_RS04020 PF03458 UPF0126 domain JE55_RS04025 PF00005 ABC transporter JE55_RS04025 PF17912 MalK OB fold domain JE55_RS04030 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS04035 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS04040 PF01547 Bacterial extracellular solute-binding protein JE55_RS04045 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JE55_RS04045 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JE55_RS04050 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JE55_RS04055 PF01418 Helix-turn-helix domain, rpiR family JE55_RS04055 PF02685 Glucokinase JE55_RS04055 PF01380 SIS domain JE55_RS04060 PF00497 Bacterial extracellular solute-binding proteins, family 3 JE55_RS04065 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS04070 PF00005 ABC transporter JE55_RS04075 PF00291 Pyridoxal-phosphate dependent enzyme JE55_RS04085 PF07690 Major Facilitator Superfamily JE55_RS04100 PF00202 Aminotransferase class-III JE55_RS04105 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JE55_RS04105 PF01872 RibD C-terminal domain JE55_RS04110 PF00677 Lumazine binding domain JE55_RS04115 PF02810 SEC-C motif JE55_RS04115 PF07516 SecA Wing and Scaffold domain JE55_RS04115 PF07517 SecA DEAD-like domain JE55_RS04115 PF01043 SecA preprotein cross-linking domain JE55_RS04120 PF00925 GTP cyclohydrolase II JE55_RS04120 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JE55_RS04125 PF00885 6,7-dimethyl-8-ribityllumazine synthase JE55_RS04130 PF01029 NusB family JE55_RS04135 PF00155 Aminotransferase class I and II JE55_RS04140 PF01464 Transglycosylase SLT domain JE55_RS04145 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JE55_RS04155 PF00291 Pyridoxal-phosphate dependent enzyme JE55_RS04170 PF02325 YGGT family JE55_RS04180 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JE55_RS04185 PF00082 Subtilase family JE55_RS04185 PF09286 Pro-kumamolisin, activation domain JE55_RS04190 PF08241 Methyltransferase domain JE55_RS04195 PF02146 Sir2 family JE55_RS04210 PF02390 Putative methyltransferase JE55_RS04215 PF02673 Bacitracin resistance protein BacA JE55_RS04225 PF03692 Putative zinc- or iron-chelating domain JE55_RS04230 PF06969 HemN C-terminal domain JE55_RS04230 PF04055 Radical SAM superfamily JE55_RS04245 PF00581 Rhodanese-like domain JE55_RS04250 PF00202 Aminotransferase class-III JE55_RS04260 PF02653 Branched-chain amino acid transport system / permease component JE55_RS04265 PF02653 Branched-chain amino acid transport system / permease component JE55_RS04270 PF00005 ABC transporter JE55_RS04275 PF00005 ABC transporter JE55_RS04280 PF01774 UreD urease accessory protein JE55_RS04285 PF00547 Urease, gamma subunit JE55_RS04290 PF00699 Urease beta subunit JE55_RS04295 PF01979 Amidohydrolase family JE55_RS04295 PF00449 Urease alpha-subunit, N-terminal domain JE55_RS04300 PF05194 UreE urease accessory protein, C-terminal domain JE55_RS04300 PF02814 UreE urease accessory protein, N-terminal domain JE55_RS04305 PF01730 UreF JE55_RS04310 PF02492 CobW/HypB/UreG, nucleotide-binding domain JE55_RS04315 PF00534 Glycosyl transferases group 1 JE55_RS04315 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JE55_RS04325 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JE55_RS04330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JE55_RS04330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JE55_RS04330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JE55_RS04330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JE55_RS04345 PF13439 Glycosyltransferase Family 4 JE55_RS04345 PF00534 Glycosyl transferases group 1 JE55_RS04350 PF16363 GDP-mannose 4,6 dehydratase JE55_RS04360 PF02719 Polysaccharide biosynthesis protein JE55_RS04365 PF00953 Glycosyl transferase family 4 JE55_RS04370 PF01370 NAD dependent epimerase/dehydratase family JE55_RS04380 PF00535 Glycosyl transferase family 2 JE55_RS04395 PF01370 NAD dependent epimerase/dehydratase family JE55_RS04405 PF00005 ABC transporter JE55_RS04415 PF04321 RmlD substrate binding domain JE55_RS04420 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JE55_RS04425 PF00483 Nucleotidyl transferase JE55_RS04430 PF16363 GDP-mannose 4,6 dehydratase JE55_RS04435 PF00149 Calcineurin-like phosphoesterase JE55_RS04445 PF01979 Amidohydrolase family JE55_RS04450 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JE55_RS04450 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JE55_RS04455 PF00156 Phosphoribosyl transferase domain JE55_RS04460 PF03652 Holliday junction resolvase JE55_RS04465 PF02622 Uncharacterized ACR, COG1678 JE55_RS04475 PF00301 Rubredoxin JE55_RS04485 PF00118 TCP-1/cpn60 chaperonin family JE55_RS04490 PF00166 Chaperonin 10 Kd subunit JE55_RS04500 PF01638 HxlR-like helix-turn-helix JE55_RS04505 PF00107 Zinc-binding dehydrogenase JE55_RS04505 PF08240 Alcohol dehydrogenase GroES-like domain JE55_RS04555 PF01810 LysE type translocator JE55_RS04565 PF03009 Glycerophosphoryl diester phosphodiesterase family JE55_RS04570 PF07690 Major Facilitator Superfamily JE55_RS04575 PF01925 Sulfite exporter TauE/SafE JE55_RS04585 PF10605 3HB-oligomer hydrolase (3HBOH) JE55_RS04610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS04610 PF03466 LysR substrate binding domain JE55_RS04615 PF01032 FecCD transport family JE55_RS04625 PF00005 ABC transporter JE55_RS04630 PF00593 TonB dependent receptor JE55_RS04630 PF07715 TonB-dependent Receptor Plug Domain JE55_RS04650 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JE55_RS04650 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JE55_RS04655 PF01799 [2Fe-2S] binding domain JE55_RS04655 PF00111 2Fe-2S iron-sulfur cluster binding domain JE55_RS04660 PF07690 Major Facilitator Superfamily JE55_RS04665 PF00892 EamA-like transporter family JE55_RS04675 PF00266 Aminotransferase class-V JE55_RS04680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS04680 PF03466 LysR substrate binding domain JE55_RS04685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JE55_RS04685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JE55_RS04690 PF00881 Nitroreductase family JE55_RS04695 PF07690 Major Facilitator Superfamily JE55_RS04715 PF04209 homogentisate 1,2-dioxygenase JE55_RS04720 PF07690 Major Facilitator Superfamily JE55_RS04730 PF01494 FAD binding domain JE55_RS04760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS04760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS04760 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS04770 PF00578 AhpC/TSA family JE55_RS04770 PF10417 C-terminal domain of 1-Cys peroxiredoxin JE55_RS04815 PF03477 ATP cone domain JE55_RS04820 PF00464 Serine hydroxymethyltransferase JE55_RS04825 PF00106 short chain dehydrogenase JE55_RS04830 PF03061 Thioesterase superfamily JE55_RS04835 PF01618 MotA/TolQ/ExbB proton channel family JE55_RS04840 PF02472 Biopolymer transport protein ExbD/TolR JE55_RS04850 PF04052 TolB amino-terminal domain JE55_RS04850 PF07676 WD40-like Beta Propeller Repeat JE55_RS04855 PF00691 OmpA family JE55_RS04885 PF00483 Nucleotidyl transferase JE55_RS04890 PF00571 CBS domain JE55_RS04890 PF01380 SIS domain JE55_RS04900 PF00793 DAHP synthetase I family JE55_RS04905 PF00534 Glycosyl transferases group 1 JE55_RS04905 PF13439 Glycosyltransferase Family 4 JE55_RS04915 PF00132 Bacterial transferase hexapeptide (six repeats) JE55_RS04920 PF05159 Capsule polysaccharide biosynthesis protein JE55_RS04930 PF02706 Chain length determinant protein JE55_RS04930 PF13807 G-rich domain on putative tyrosine kinase JE55_RS04930 PF13614 AAA domain JE55_RS04935 PF01451 Low molecular weight phosphotyrosine protein phosphatase JE55_RS04940 PF02563 Polysaccharide biosynthesis/export protein JE55_RS04940 PF10531 SLBB domain JE55_RS04945 PF02397 Bacterial sugar transferase JE55_RS04950 PF02311 AraC-like ligand binding domain JE55_RS04950 PF12833 Helix-turn-helix domain JE55_RS04980 PF00155 Aminotransferase class I and II JE55_RS04985 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JE55_RS04990 PF02801 Beta-ketoacyl synthase, C-terminal domain JE55_RS04990 PF00698 Acyl transferase domain JE55_RS04990 PF00550 Phosphopantetheine attachment site JE55_RS04990 PF08240 Alcohol dehydrogenase GroES-like domain JE55_RS04990 PF16197 Ketoacyl-synthetase C-terminal extension JE55_RS04990 PF08659 KR domain JE55_RS04990 PF00109 Beta-ketoacyl synthase, N-terminal domain JE55_RS04990 PF14765 Polyketide synthase dehydratase JE55_RS04995 PF00884 Sulfatase JE55_RS05005 PF05159 Capsule polysaccharide biosynthesis protein JE55_RS05015 PF00483 Nucleotidyl transferase JE55_RS05020 PF13580 SIS domain JE55_RS05025 PF08544 GHMP kinases C terminal JE55_RS05025 PF00288 GHMP kinases N terminal domain JE55_RS05030 PF16363 GDP-mannose 4,6 dehydratase JE55_RS05065 PF00005 ABC transporter JE55_RS05070 PF01061 ABC-2 type transporter JE55_RS05080 PF02563 Polysaccharide biosynthesis/export protein JE55_RS05090 PF05159 Capsule polysaccharide biosynthesis protein JE55_RS05095 PF01050 Mannose-6-phosphate isomerase JE55_RS05095 PF00483 Nucleotidyl transferase JE55_RS05105 PF05552 Conserved TM helix JE55_RS05105 PF00924 Mechanosensitive ion channel JE55_RS05110 PF09335 SNARE associated Golgi protein JE55_RS05115 PF08676 MutL C terminal dimerisation domain JE55_RS05115 PF01119 DNA mismatch repair protein, C-terminal domain JE55_RS05130 PF00586 AIR synthase related protein, N-terminal domain JE55_RS05130 PF02769 AIR synthase related protein, C-terminal domain JE55_RS05135 PF00308 Bacterial dnaA protein JE55_RS05145 PF12627 Probable RNA and SrmB- binding site of polymerase A JE55_RS05145 PF12626 Polymerase A arginine-rich C-terminus JE55_RS05145 PF01743 Poly A polymerase head domain JE55_RS05150 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JE55_RS05155 PF01712 Deoxynucleoside kinase JE55_RS05160 PF02548 Ketopantoate hydroxymethyltransferase JE55_RS05165 PF04715 Anthranilate synthase component I, N terminal region JE55_RS05165 PF00425 chorismate binding enzyme JE55_RS05170 PF00226 DnaJ domain JE55_RS05170 PF01556 DnaJ C terminal domain JE55_RS05170 PF00684 DnaJ central domain JE55_RS05175 PF00012 Hsp70 protein JE55_RS05185 PF01025 GrpE JE55_RS05190 PF01479 S4 domain JE55_RS05195 PF00762 Ferrochelatase JE55_RS05200 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding JE55_RS05200 PF01628 HrcA protein C terminal domain JE55_RS05205 PF01513 ATP-NAD kinase JE55_RS05210 PF02463 RecF/RecN/SMC N terminal domain JE55_RS05215 PF03710 Glutamate-ammonia ligase adenylyltransferase JE55_RS05215 PF08335 GlnD PII-uridylyltransferase JE55_RS05220 PF13502 AsmA-like C-terminal region JE55_RS05220 PF13116 Protein of unknown function JE55_RS05225 PF00795 Carbon-nitrogen hydrolase JE55_RS05230 PF01523 Putative modulator of DNA gyrase JE55_RS05235 PF00793 DAHP synthetase I family JE55_RS05245 PF00970 Oxidoreductase FAD-binding domain JE55_RS05245 PF00175 Oxidoreductase NAD-binding domain JE55_RS05245 PF00042 Globin JE55_RS05250 PF01923 Cobalamin adenosyltransferase JE55_RS05255 PF01565 FAD binding domain JE55_RS05255 PF02913 FAD linked oxidases, C-terminal domain JE55_RS05260 PF02913 FAD linked oxidases, C-terminal domain JE55_RS05260 PF01565 FAD binding domain JE55_RS05265 PF01565 FAD binding domain JE55_RS05270 PF02754 Cysteine-rich domain JE55_RS05270 PF13183 4Fe-4S dicluster domain JE55_RS05275 PF01168 Alanine racemase, N-terminal domain JE55_RS05280 PF14748 Pyrroline-5-carboxylate reductase dimerisation JE55_RS05280 PF03807 NADP oxidoreductase coenzyme F420-dependent JE55_RS05285 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS05295 PF00005 ABC transporter JE55_RS05300 PF07969 Amidohydrolase family JE55_RS05305 PF00005 ABC transporter JE55_RS05310 PF00005 ABC transporter JE55_RS05315 PF06007 Phosphonate metabolism protein PhnJ JE55_RS05320 PF05861 Bacterial phosphonate metabolism protein (PhnI) JE55_RS05330 PF06754 Phosphonate metabolism protein PhnG JE55_RS05335 PF07702 UTRA domain JE55_RS05335 PF00392 Bacterial regulatory proteins, gntR family JE55_RS05340 PF06299 Protein of unknown function (DUF1045) JE55_RS05350 PF01040 UbiA prenyltransferase family JE55_RS05355 PF01638 HxlR-like helix-turn-helix JE55_RS05365 PF00210 Ferritin-like domain JE55_RS05375 PF00141 Peroxidase JE55_RS05380 PF03466 LysR substrate binding domain JE55_RS05380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS05385 PF00271 Helicase conserved C-terminal domain JE55_RS05385 PF17191 RecG wedge domain JE55_RS05385 PF00270 DEAD/DEAH box helicase JE55_RS05390 PF02547 Queuosine biosynthesis protein JE55_RS05395 PF01702 Queuine tRNA-ribosyltransferase JE55_RS05400 PF02699 Preprotein translocase subunit JE55_RS05405 PF13721 SecD export protein N-terminal TM region JE55_RS05405 PF02355 Protein export membrane protein JE55_RS05405 PF07549 SecD/SecF GG Motif JE55_RS05410 PF07549 SecD/SecF GG Motif JE55_RS05410 PF02355 Protein export membrane protein JE55_RS05415 PF07690 Major Facilitator Superfamily JE55_RS05420 PF04264 YceI-like domain JE55_RS05425 PF04264 YceI-like domain JE55_RS05445 PF04403 Paraquat-inducible protein A JE55_RS05450 PF02470 MlaD protein JE55_RS05465 PF02926 THUMP domain JE55_RS05465 PF01170 Putative RNA methylase family UPF0020 JE55_RS05495 PF02233 NAD(P) transhydrogenase beta subunit JE55_RS05500 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JE55_RS05505 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JE55_RS05505 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JE55_RS05510 PF00293 NUDIX domain JE55_RS05520 PF01645 Conserved region in glutamate synthase JE55_RS05525 PF00043 Glutathione S-transferase, C-terminal domain JE55_RS05525 PF13417 Glutathione S-transferase, N-terminal domain JE55_RS05530 PF05195 Aminopeptidase P, N-terminal domain JE55_RS05530 PF00557 Metallopeptidase family M24 JE55_RS05535 PF01494 FAD binding domain JE55_RS05540 PF01207 Dihydrouridine synthase (Dus) JE55_RS05545 PF02954 Bacterial regulatory protein, Fis family JE55_RS05550 PF02142 MGS-like domain JE55_RS05550 PF01808 AICARFT/IMPCHase bienzyme JE55_RS05560 PF02075 Crossover junction endodeoxyribonuclease RuvC JE55_RS05565 PF01330 RuvA N terminal domain JE55_RS05565 PF07499 RuvA, C-terminal domain JE55_RS05570 PF17864 RuvB AAA lid domain JE55_RS05570 PF05491 RuvB C-terminal winged helix domain JE55_RS05570 PF05496 Holliday junction DNA helicase RuvB P-loop domain JE55_RS05585 PF00300 Histidine phosphatase superfamily (branch 1) JE55_RS05590 PF02580 D-Tyr-tRNA(Tyr) deacylase JE55_RS05595 PF01479 S4 domain JE55_RS05595 PF00579 tRNA synthetases class I (W and Y) JE55_RS05600 PF03702 Anhydro-N-acetylmuramic acid kinase JE55_RS05605 PF00043 Glutathione S-transferase, C-terminal domain JE55_RS05605 PF02798 Glutathione S-transferase, N-terminal domain JE55_RS05610 PF02798 Glutathione S-transferase, N-terminal domain JE55_RS05615 PF02311 AraC-like ligand binding domain JE55_RS05615 PF12833 Helix-turn-helix domain JE55_RS05620 PF01521 Iron-sulphur cluster biosynthesis JE55_RS05625 PF00380 Ribosomal protein S9/S16 JE55_RS05630 PF00572 Ribosomal protein L13 JE55_RS05645 PF01979 Amidohydrolase family JE55_RS05650 PF13230 Glutamine amidotransferases class-II JE55_RS05660 PF00011 Hsp20/alpha crystallin family JE55_RS05665 PF00011 Hsp20/alpha crystallin family JE55_RS05670 PF00166 Chaperonin 10 Kd subunit JE55_RS05675 PF00118 TCP-1/cpn60 chaperonin family JE55_RS05685 PF13542 Helix-turn-helix domain of transposase family ISL3 JE55_RS05685 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JE55_RS05685 PF01610 Transposase JE55_RS05690 PF00005 ABC transporter JE55_RS05695 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS05700 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS05705 PF00497 Bacterial extracellular solute-binding proteins, family 3 JE55_RS05710 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JE55_RS05710 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JE55_RS05715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS05715 PF03466 LysR substrate binding domain JE55_RS05720 PF07690 Major Facilitator Superfamily JE55_RS05725 PF08328 Adenylosuccinate lyase C-terminal JE55_RS05725 PF00206 Lyase JE55_RS05735 PF02447 GntP family permease JE55_RS05740 PF01081 KDPG and KHG aldolase JE55_RS05745 PF00920 Dehydratase family JE55_RS05750 PF01418 Helix-turn-helix domain, rpiR family JE55_RS05750 PF01380 SIS domain JE55_RS05750 PF02685 Glucokinase JE55_RS05755 PF03653 Uncharacterised protein family (UPF0093) JE55_RS05760 PF00171 Aldehyde dehydrogenase family JE55_RS05765 PF14840 Processivity clamp loader gamma complex DNA pol III C-term JE55_RS05765 PF06144 DNA polymerase III, delta subunit JE55_RS05775 PF13603 Leucyl-tRNA synthetase, Domain 2 JE55_RS05775 PF00133 tRNA synthetases class I (I, L, M and V) JE55_RS05775 PF09334 tRNA synthetases class I (M) JE55_RS05775 PF08264 Anticodon-binding domain of tRNA JE55_RS05780 PF02472 Biopolymer transport protein ExbD/TolR JE55_RS05785 PF01618 MotA/TolQ/ExbB proton channel family JE55_RS05790 PF01113 Dihydrodipicolinate reductase, N-terminus JE55_RS05790 PF05173 Dihydrodipicolinate reductase, C-terminus JE55_RS05795 PF04355 SmpA / OmlA family JE55_RS05800 PF01475 Ferric uptake regulator family JE55_RS05805 PF04115 Ureidoglycolate lyase JE55_RS05810 PF03561 Allantoicase repeat JE55_RS05815 PF00375 Sodium:dicarboxylate symporter family JE55_RS05820 PF07729 FCD domain JE55_RS05820 PF00392 Bacterial regulatory proteins, gntR family JE55_RS05825 PF03466 LysR substrate binding domain JE55_RS05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS05830 PF00484 Carbonic anhydrase JE55_RS05835 PF02560 Cyanate lyase C-terminal domain JE55_RS05840 PF07690 Major Facilitator Superfamily JE55_RS05845 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JE55_RS05845 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JE55_RS05850 PF02779 Transketolase, pyrimidine binding domain JE55_RS05850 PF02780 Transketolase, C-terminal domain JE55_RS05850 PF00456 Transketolase, thiamine diphosphate binding domain JE55_RS05855 PF17284 Spermidine synthase tetramerisation domain JE55_RS05865 PF04452 RNA methyltransferase JE55_RS05885 PF01515 Phosphate acetyl/butaryl transferase JE55_RS05885 PF00390 Malic enzyme, N-terminal domain JE55_RS05885 PF03949 Malic enzyme, NAD binding domain JE55_RS05890 PF00586 AIR synthase related protein, N-terminal domain JE55_RS05890 PF02769 AIR synthase related protein, C-terminal domain JE55_RS05895 PF04608 Phosphatidylglycerophosphatase A JE55_RS05900 PF02464 Competence-damaged protein JE55_RS05905 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JE55_RS05920 PF02653 Branched-chain amino acid transport system / permease component JE55_RS05925 PF00005 ABC transporter JE55_RS05930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JE55_RS05945 PF05035 2-keto-3-deoxy-galactonokinase JE55_RS05950 PF01614 Bacterial transcriptional regulator JE55_RS05950 PF09339 IclR helix-turn-helix domain JE55_RS05965 PF00912 Transglycosylase JE55_RS05970 PF08501 Shikimate dehydrogenase substrate binding domain JE55_RS05970 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JE55_RS05970 PF01488 Shikimate / quinate 5-dehydrogenase JE55_RS05975 PF00773 RNB domain JE55_RS05980 PF05728 Uncharacterised protein family (UPF0227) JE55_RS05985 PF01225 Mur ligase family, catalytic domain JE55_RS05985 PF02875 Mur ligase family, glutamate ligase domain JE55_RS05985 PF08245 Mur ligase middle domain JE55_RS05995 PF00578 AhpC/TSA family JE55_RS06000 PF01220 Dehydroquinase class II JE55_RS06005 PF00364 Biotin-requiring enzyme JE55_RS06010 PF00289 Biotin carboxylase, N-terminal domain JE55_RS06010 PF02785 Biotin carboxylase C-terminal domain JE55_RS06010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JE55_RS06025 PF08534 Redoxin JE55_RS06030 PF00294 pfkB family carbohydrate kinase JE55_RS06045 PF00268 Ribonucleotide reductase, small chain JE55_RS06050 PF02867 Ribonucleotide reductase, barrel domain JE55_RS06050 PF00317 Ribonucleotide reductase, all-alpha domain JE55_RS06050 PF03477 ATP cone domain JE55_RS06055 PF01510 N-acetylmuramoyl-L-alanine amidase JE55_RS06065 PF01578 Cytochrome C assembly protein JE55_RS06070 PF02978 Signal peptide binding domain JE55_RS06070 PF02881 SRP54-type protein, helical bundle domain JE55_RS06070 PF00448 SRP54-type protein, GTPase domain JE55_RS06075 PF00156 Phosphoribosyl transferase domain JE55_RS06080 PF01914 MarC family integral membrane protein JE55_RS06085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JE55_RS06085 PF03129 Anticodon binding domain JE55_RS06085 PF04073 Aminoacyl-tRNA editing domain JE55_RS06090 PF00293 NUDIX domain JE55_RS06100 PF00696 Amino acid kinase family JE55_RS06100 PF01472 PUA domain JE55_RS06105 PF01926 50S ribosome-binding GTPase JE55_RS06105 PF01018 GTP1/OBG JE55_RS06110 PF01016 Ribosomal L27 protein JE55_RS06115 PF00829 Ribosomal prokaryotic L21 protein JE55_RS06120 PF00348 Polyprenyl synthetase JE55_RS06175 PF14850 DNA-binding domain of Proline dehydrogenase JE55_RS06175 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JE55_RS06175 PF01619 Proline dehydrogenase JE55_RS06175 PF00171 Aldehyde dehydrogenase family JE55_RS06180 PF03432 Relaxase/Mobilisation nuclease domain JE55_RS06180 PF18821 Large polyvalent protein-associated domain 7 JE55_RS06195 PF00589 Phage integrase family JE55_RS06200 PF00571 CBS domain JE55_RS06200 PF03471 Transporter associated domain JE55_RS06200 PF01595 Cyclin M transmembrane N-terminal domain JE55_RS06205 PF00437 Type II/IV secretion system protein JE55_RS06205 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JE55_RS06210 PF00482 Type II secretion system (T2SS), protein F JE55_RS06215 PF06750 Bacterial Peptidase A24 N-terminal domain JE55_RS06215 PF01478 Type IV leader peptidase family JE55_RS06220 PF01121 Dephospho-CoA kinase JE55_RS06225 PF07072 Cell division protein JE55_RS06230 PF03884 DNA gyrase inhibitor YacG JE55_RS06235 PF00293 NUDIX domain JE55_RS06245 PF01960 ArgJ family JE55_RS06250 PF07517 SecA DEAD-like domain JE55_RS06250 PF02810 SEC-C motif JE55_RS06250 PF07516 SecA Wing and Scaffold domain JE55_RS06250 PF01043 SecA preprotein cross-linking domain JE55_RS06265 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JE55_RS06270 PF08534 Redoxin JE55_RS06275 PF12327 FtsZ family, C-terminal domain JE55_RS06275 PF00091 Tubulin/FtsZ family, GTPase domain JE55_RS06280 PF02491 SHS2 domain inserted in FTSA JE55_RS06285 PF08478 POTRA domain, FtsQ-type JE55_RS06285 PF03799 Cell division protein FtsQ JE55_RS06290 PF01820 D-ala D-ala ligase N-terminus JE55_RS06290 PF07478 D-ala D-ala ligase C-terminus JE55_RS06295 PF02875 Mur ligase family, glutamate ligase domain JE55_RS06295 PF01225 Mur ligase family, catalytic domain JE55_RS06295 PF08245 Mur ligase middle domain JE55_RS06300 PF04101 Glycosyltransferase family 28 C-terminal domain JE55_RS06300 PF03033 Glycosyltransferase family 28 N-terminal domain JE55_RS06305 PF01098 Cell cycle protein JE55_RS06310 PF02875 Mur ligase family, glutamate ligase domain JE55_RS06310 PF08245 Mur ligase middle domain JE55_RS06315 PF00953 Glycosyl transferase family 4 JE55_RS06315 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JE55_RS06320 PF01225 Mur ligase family, catalytic domain JE55_RS06320 PF02875 Mur ligase family, glutamate ligase domain JE55_RS06320 PF08245 Mur ligase middle domain JE55_RS06325 PF08245 Mur ligase middle domain JE55_RS06325 PF02875 Mur ligase family, glutamate ligase domain JE55_RS06330 PF03717 Penicillin-binding Protein dimerisation domain JE55_RS06330 PF00905 Penicillin binding protein transpeptidase domain JE55_RS06335 PF04999 Cell division protein FtsL JE55_RS06340 PF01795 MraW methylase family JE55_RS06345 PF02381 MraZ protein, putative antitoxin-like JE55_RS06350 PF03232 Ubiquinone biosynthesis protein COQ7 JE55_RS06355 PF13609 Gram-negative porin JE55_RS06360 PF13193 AMP-binding enzyme C-terminal domain JE55_RS06360 PF00501 AMP-binding enzyme JE55_RS06365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JE55_RS06365 PF00384 Molybdopterin oxidoreductase JE55_RS06365 PF01568 Molydopterin dinucleotide binding domain JE55_RS06395 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS06405 PF00108 Thiolase, N-terminal domain JE55_RS06405 PF02803 Thiolase, C-terminal domain JE55_RS06410 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS06415 PF03061 Thioesterase superfamily JE55_RS06420 PF14535 AMP-binding enzyme C-terminal domain JE55_RS06420 PF00501 AMP-binding enzyme JE55_RS06425 PF06725 3D domain JE55_RS06425 PF03562 MltA specific insert domain JE55_RS06435 PF04379 ApaG domain JE55_RS06440 PF00834 Ribulose-phosphate 3 epimerase family JE55_RS06445 PF13419 Haloacid dehalogenase-like hydrolase JE55_RS06450 PF00425 chorismate binding enzyme JE55_RS06450 PF04715 Anthranilate synthase component I, N terminal region JE55_RS06455 PF00117 Glutamine amidotransferase class-I JE55_RS06460 PF02885 Glycosyl transferase family, helical bundle domain JE55_RS06460 PF00591 Glycosyl transferase family, a/b domain JE55_RS06465 PF00218 Indole-3-glycerol phosphate synthase JE55_RS06475 PF03167 Uracil DNA glycosylase superfamily JE55_RS06480 PF02525 Flavodoxin-like fold JE55_RS06490 PF13098 Thioredoxin-like domain JE55_RS06490 PF10411 Disulfide bond isomerase protein N-terminus JE55_RS06495 PF01494 FAD binding domain JE55_RS06510 PF06071 Protein of unknown function (DUF933) JE55_RS06510 PF01926 50S ribosome-binding GTPase JE55_RS06525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JE55_RS06535 PF00324 Amino acid permease JE55_RS06545 PF03009 Glycerophosphoryl diester phosphodiesterase family JE55_RS06560 PF12848 ABC transporter JE55_RS06560 PF00005 ABC transporter JE55_RS06570 PF00857 Isochorismatase family JE55_RS06580 PF01321 Creatinase/Prolidase N-terminal domain JE55_RS06580 PF00557 Metallopeptidase family M24 JE55_RS06600 PF01488 Shikimate / quinate 5-dehydrogenase JE55_RS06600 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JE55_RS06600 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JE55_RS06605 PF03462 PCRF domain JE55_RS06605 PF00472 RF-1 domain JE55_RS06610 PF17827 PrmC N-terminal domain JE55_RS06610 PF05175 Methyltransferase small domain JE55_RS06615 PF00462 Glutaredoxin JE55_RS06620 PF02441 Flavoprotein JE55_RS06625 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JE55_RS06630 PF13520 Amino acid permease JE55_RS06635 PF00313 'Cold-shock' DNA-binding domain JE55_RS06640 PF00012 Hsp70 protein JE55_RS06690 PF11838 ERAP1-like C-terminal domain JE55_RS06690 PF01433 Peptidase family M1 domain JE55_RS06705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JE55_RS06705 PF00529 HlyD membrane-fusion protein of T1SS JE55_RS06710 PF00664 ABC transporter transmembrane region JE55_RS06710 PF00005 ABC transporter JE55_RS06710 PF03412 Peptidase C39 family JE55_RS06730 PF06744 Type VI secretion protein IcmF C-terminal JE55_RS06730 PF14331 ImcF-related N-terminal domain JE55_RS06730 PF06761 Intracellular multiplication and human macrophage-killing JE55_RS06740 PF00691 OmpA family JE55_RS06750 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS06750 PF07724 AAA domain (Cdc48 subfamily) JE55_RS06750 PF10431 C-terminal, D2-small domain, of ClpB protein JE55_RS06750 PF17871 AAA lid domain JE55_RS06760 PF05947 Type VI secretion system, TssF JE55_RS06775 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JE55_RS06780 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 JE55_RS06795 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JE55_RS06845 PF18272 single-stranded DNA binding TraI N-terminal subdomain JE55_RS06845 PF18340 DNA relaxase TraI 2B/2B-like domain JE55_RS06845 PF08751 TrwC relaxase JE55_RS06845 PF07057 DNA helicase TraI JE55_RS06890 PF00589 Phage integrase family JE55_RS06900 PF04386 Stringent starvation protein B JE55_RS06905 PF02798 Glutathione S-transferase, N-terminal domain JE55_RS06905 PF00043 Glutathione S-transferase, C-terminal domain JE55_RS06910 PF02167 Cytochrome C1 family JE55_RS06915 PF00032 Cytochrome b(C-terminal)/b6/petD JE55_RS06915 PF00033 Cytochrome b/b6/petB JE55_RS06920 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JE55_RS06920 PF00355 Rieske [2Fe-2S] domain JE55_RS06925 PF01784 NIF3 (NGG1p interacting factor 3) JE55_RS06930 PF17820 PDZ domain JE55_RS06930 PF13180 PDZ domain JE55_RS06940 PF00902 Sec-independent protein translocase protein (TatC) JE55_RS06945 PF02416 mttA/Hcf106 family JE55_RS06950 PF02416 mttA/Hcf106 family JE55_RS06965 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JE55_RS06970 PF01502 Phosphoribosyl-AMP cyclohydrolase JE55_RS06975 PF00977 Histidine biosynthesis protein JE55_RS06980 PF00977 Histidine biosynthesis protein JE55_RS06985 PF00117 Glutamine amidotransferase class-I JE55_RS06990 PF01914 MarC family integral membrane protein JE55_RS06995 PF00475 Imidazoleglycerol-phosphate dehydratase JE55_RS07000 PF00155 Aminotransferase class I and II JE55_RS07005 PF00815 Histidinol dehydrogenase JE55_RS07010 PF01634 ATP phosphoribosyltransferase JE55_RS07015 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JE55_RS07025 PF01061 ABC-2 type transporter JE55_RS07030 PF00005 ABC transporter JE55_RS07050 PF02470 MlaD protein JE55_RS07055 PF02405 Permease MlaE JE55_RS07060 PF00005 ABC transporter JE55_RS07065 PF02581 Thiamine monophosphate synthase JE55_RS07070 PF05690 Thiazole biosynthesis protein ThiG JE55_RS07080 PF01266 FAD dependent oxidoreductase JE55_RS07085 PF06472 ABC transporter transmembrane region 2 JE55_RS07085 PF00005 ABC transporter JE55_RS07100 PF01235 Sodium:alanine symporter family JE55_RS07105 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JE55_RS07105 PF07992 Pyridine nucleotide-disulphide oxidoreductase JE55_RS07110 PF04898 Glutamate synthase central domain JE55_RS07110 PF00310 Glutamine amidotransferases class-II JE55_RS07110 PF01645 Conserved region in glutamate synthase JE55_RS07110 PF01493 GXGXG motif JE55_RS07125 PF03009 Glycerophosphoryl diester phosphodiesterase family JE55_RS07130 PF17912 MalK OB fold domain JE55_RS07130 PF00005 ABC transporter JE55_RS07135 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS07140 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS07145 PF13416 Bacterial extracellular solute-binding protein JE55_RS07150 PF13286 Phosphohydrolase-associated domain JE55_RS07150 PF01966 HD domain JE55_RS07155 PF01761 3-dehydroquinate synthase JE55_RS07160 PF01202 Shikimate kinase JE55_RS07165 PF03958 Bacterial type II/III secretion system short domain JE55_RS07165 PF07660 Secretin and TonB N terminus short domain JE55_RS07165 PF11741 AMIN domain JE55_RS07165 PF00263 Bacterial type II and III secretion system protein JE55_RS07185 PF00905 Penicillin binding protein transpeptidase domain JE55_RS07185 PF17092 Penicillin-binding protein OB-like domain JE55_RS07185 PF00912 Transglycosylase JE55_RS07190 PF01491 Frataxin-like domain JE55_RS07200 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JE55_RS07200 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JE55_RS07205 PF01794 Ferric reductase like transmembrane component JE55_RS07210 PF00174 Oxidoreductase molybdopterin binding domain JE55_RS07215 PF01578 Cytochrome C assembly protein JE55_RS07220 PF05140 ResB-like family JE55_RS07225 PF00034 Cytochrome c JE55_RS07230 PF01926 50S ribosome-binding GTPase JE55_RS07235 PF00490 Delta-aminolevulinic acid dehydratase JE55_RS07240 PF11412 Disulphide bond corrector protein DsbC JE55_RS07240 PF02683 Cytochrome C biogenesis protein transmembrane region JE55_RS07250 PF01196 Ribosomal protein L17 JE55_RS07255 PF01000 RNA polymerase Rpb3/RpoA insert domain JE55_RS07255 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JE55_RS07255 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JE55_RS07260 PF00163 Ribosomal protein S4/S9 N-terminal domain JE55_RS07260 PF01479 S4 domain JE55_RS07265 PF00411 Ribosomal protein S11 JE55_RS07270 PF00416 Ribosomal protein S13/S18 JE55_RS07275 PF00444 Ribosomal protein L36 JE55_RS07280 PF01176 Translation initiation factor 1A / IF-1 JE55_RS07285 PF00344 SecY translocase JE55_RS07290 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JE55_RS07295 PF00327 Ribosomal protein L30p/L7e JE55_RS07300 PF03719 Ribosomal protein S5, C-terminal domain JE55_RS07300 PF00333 Ribosomal protein S5, N-terminal domain JE55_RS07305 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JE55_RS07310 PF00347 Ribosomal protein L6 JE55_RS07315 PF00410 Ribosomal protein S8 JE55_RS07320 PF00253 Ribosomal protein S14p/S29e JE55_RS07325 PF00673 ribosomal L5P family C-terminus JE55_RS07325 PF00281 Ribosomal protein L5 JE55_RS07330 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JE55_RS07335 PF00238 Ribosomal protein L14p/L23e JE55_RS07340 PF00366 Ribosomal protein S17 JE55_RS07345 PF00831 Ribosomal L29 protein JE55_RS07350 PF00252 Ribosomal protein L16p/L10e JE55_RS07355 PF07650 KH domain JE55_RS07355 PF00189 Ribosomal protein S3, C-terminal domain JE55_RS07360 PF00237 Ribosomal protein L22p/L17e JE55_RS07365 PF00203 Ribosomal protein S19 JE55_RS07370 PF00181 Ribosomal Proteins L2, RNA binding domain JE55_RS07370 PF03947 Ribosomal Proteins L2, C-terminal domain JE55_RS07375 PF00276 Ribosomal protein L23 JE55_RS07380 PF00573 Ribosomal protein L4/L1 family JE55_RS07385 PF00297 Ribosomal protein L3 JE55_RS07390 PF00338 Ribosomal protein S10p/S20e JE55_RS07395 PF03143 Elongation factor Tu C-terminal domain JE55_RS07395 PF03144 Elongation factor Tu domain 2 JE55_RS07395 PF00009 Elongation factor Tu GTP binding domain JE55_RS07400 PF14492 Elongation Factor G, domain II JE55_RS07400 PF00679 Elongation factor G C-terminus JE55_RS07400 PF03144 Elongation factor Tu domain 2 JE55_RS07400 PF03764 Elongation factor G, domain IV JE55_RS07400 PF00009 Elongation factor Tu GTP binding domain JE55_RS07405 PF00177 Ribosomal protein S7p/S5e JE55_RS07410 PF00164 Ribosomal protein S12/S23 JE55_RS07415 PF00570 HRDC domain JE55_RS07415 PF16124 RecQ zinc-binding JE55_RS07415 PF00271 Helicase conserved C-terminal domain JE55_RS07415 PF00270 DEAD/DEAH box helicase JE55_RS07415 PF09382 RQC domain JE55_RS07420 PF01610 Transposase JE55_RS07420 PF13542 Helix-turn-helix domain of transposase family ISL3 JE55_RS07420 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JE55_RS07425 PF05000 RNA polymerase Rpb1, domain 4 JE55_RS07425 PF04997 RNA polymerase Rpb1, domain 1 JE55_RS07425 PF00623 RNA polymerase Rpb1, domain 2 JE55_RS07425 PF04998 RNA polymerase Rpb1, domain 5 JE55_RS07425 PF04983 RNA polymerase Rpb1, domain 3 JE55_RS07430 PF04565 RNA polymerase Rpb2, domain 3 JE55_RS07430 PF04563 RNA polymerase beta subunit JE55_RS07430 PF10385 RNA polymerase beta subunit external 1 domain JE55_RS07430 PF04561 RNA polymerase Rpb2, domain 2 JE55_RS07430 PF00562 RNA polymerase Rpb2, domain 6 JE55_RS07430 PF04560 RNA polymerase Rpb2, domain 7 JE55_RS07435 PF16320 Ribosomal protein L7/L12 dimerisation domain JE55_RS07435 PF00542 Ribosomal protein L7/L12 C-terminal domain JE55_RS07440 PF00466 Ribosomal protein L10 JE55_RS07445 PF00687 Ribosomal protein L1p/L10e family JE55_RS07450 PF03946 Ribosomal protein L11, N-terminal domain JE55_RS07450 PF00298 Ribosomal protein L11, RNA binding domain JE55_RS07455 PF02357 Transcription termination factor nusG JE55_RS07455 PF00467 KOW motif JE55_RS07460 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JE55_RS07470 PF00009 Elongation factor Tu GTP binding domain JE55_RS07470 PF03143 Elongation factor Tu C-terminal domain JE55_RS07470 PF03144 Elongation factor Tu domain 2 JE55_RS07520 PF05138 Phenylacetic acid catabolic protein JE55_RS07525 PF06243 Phenylacetic acid degradation B JE55_RS07530 PF05138 Phenylacetic acid catabolic protein JE55_RS07535 PF01883 Iron-sulfur cluster assembly protein JE55_RS07540 PF00970 Oxidoreductase FAD-binding domain JE55_RS07540 PF00111 2Fe-2S iron-sulfur cluster binding domain JE55_RS07540 PF00175 Oxidoreductase NAD-binding domain JE55_RS07550 PF17932 Tetracyclin repressor-like, C-terminal domain JE55_RS07550 PF00440 Bacterial regulatory proteins, tetR family JE55_RS07560 PF13404 AsnC-type helix-turn-helix domain JE55_RS07560 PF01037 Lrp/AsnC ligand binding domain JE55_RS07565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JE55_RS07580 PF03949 Malic enzyme, NAD binding domain JE55_RS07580 PF01515 Phosphate acetyl/butaryl transferase JE55_RS07580 PF00390 Malic enzyme, N-terminal domain JE55_RS07585 PF00156 Phosphoribosyl transferase domain JE55_RS07590 PF01161 Phosphatidylethanolamine-binding protein JE55_RS07595 PF03358 NADPH-dependent FMN reductase JE55_RS07600 PF01118 Semialdehyde dehydrogenase, NAD binding domain JE55_RS07605 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JE55_RS07605 PF13542 Helix-turn-helix domain of transposase family ISL3 JE55_RS07605 PF01610 Transposase JE55_RS07620 PF03922 OmpW family JE55_RS07625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS07625 PF03466 LysR substrate binding domain JE55_RS07630 PF07690 Major Facilitator Superfamily JE55_RS07635 PF01810 LysE type translocator JE55_RS07640 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JE55_RS07640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JE55_RS07670 PF00324 Amino acid permease JE55_RS07675 PF00589 Phage integrase family JE55_RS07690 PF10544 T5orf172 domain JE55_RS07720 PF14455 Predicted metal binding domain JE55_RS07730 PF14459 Prokaryotic E2 family C JE55_RS07730 PF00899 ThiF family JE55_RS07740 PF12728 Helix-turn-helix domain JE55_RS07760 PF01527 Transposase JE55_RS07765 PF13683 Integrase core domain JE55_RS07765 PF13276 HTH-like domain JE55_RS07780 PF00034 Cytochrome c JE55_RS07785 PF04972 BON domain JE55_RS07790 PF13580 SIS domain JE55_RS07795 PF02021 Uncharacterised protein family UPF0102 JE55_RS07800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JE55_RS07805 PF05036 Sporulation related domain JE55_RS07805 PF03330 Lytic transglycolase JE55_RS07810 PF00753 Metallo-beta-lactamase superfamily JE55_RS07820 PF01037 Lrp/AsnC ligand binding domain JE55_RS07825 PF16916 Dimerisation domain of Zinc Transporter JE55_RS07825 PF01545 Cation efflux family JE55_RS07840 PF07690 Major Facilitator Superfamily JE55_RS07845 PF13458 Periplasmic binding protein JE55_RS07850 PF03060 Nitronate monooxygenase JE55_RS07855 PF01738 Dienelactone hydrolase family JE55_RS07860 PF01425 Amidase JE55_RS07865 PF02219 Methylenetetrahydrofolate reductase JE55_RS07870 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV JE55_RS07875 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JE55_RS07875 PF05221 S-adenosyl-L-homocysteine hydrolase JE55_RS07880 PF04545 Sigma-70, region 4 JE55_RS07880 PF04539 Sigma-70 region 3 JE55_RS07880 PF04542 Sigma-70 region 2 JE55_RS07890 PF00448 SRP54-type protein, GTPase domain JE55_RS07890 PF00448 SRP54-type protein, GTPase domain JE55_RS07895 PF00771 FHIPEP family JE55_RS07900 PF01312 FlhB HrpN YscU SpaS Family JE55_RS07920 PF04344 Chemotaxis phosphatase, CheZ JE55_RS07925 PF00072 Response regulator receiver domain JE55_RS07930 PF01339 CheB methylesterase JE55_RS07930 PF00072 Response regulator receiver domain JE55_RS07935 PF03975 CheD chemotactic sensory transduction JE55_RS07940 PF01739 CheR methyltransferase, SAM binding domain JE55_RS07940 PF03705 CheR methyltransferase, all-alpha domain JE55_RS07945 PF00672 HAMP domain JE55_RS07945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS07945 PF02203 Tar ligand binding domain homologue JE55_RS07950 PF01584 CheW-like domain JE55_RS07955 PF01584 CheW-like domain JE55_RS07955 PF09078 CheY binding JE55_RS07955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS07955 PF02895 Signal transducing histidine kinase, homodimeric domain JE55_RS07955 PF01627 Hpt domain JE55_RS07960 PF01339 CheB methylesterase JE55_RS07960 PF00072 Response regulator receiver domain JE55_RS07965 PF13677 Membrane MotB of proton-channel complex MotA/MotB JE55_RS07965 PF00691 OmpA family JE55_RS07970 PF01618 MotA/TolQ/ExbB proton channel family JE55_RS07975 PF05280 Flagellar transcriptional activator (FlhC) JE55_RS07980 PF05247 Flagellar transcriptional activator (FlhD) JE55_RS07985 PF13439 Glycosyltransferase Family 4 JE55_RS07995 PF00230 Major intrinsic protein JE55_RS08010 PF00958 GMP synthase C terminal domain JE55_RS08010 PF00117 Glutamine amidotransferase class-I JE55_RS08010 PF03352 Methyladenine glycosylase JE55_RS08010 PF13302 Acetyltransferase (GNAT) domain JE55_RS08010 PF13673 Acetyltransferase (GNAT) domain JE55_RS08015 PF01165 Ribosomal protein S21 JE55_RS08020 PF00700 Bacterial flagellin C-terminal helical region JE55_RS08020 PF00669 Bacterial flagellin N-terminal helical region JE55_RS08040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JE55_RS08045 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JE55_RS08045 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JE55_RS08055 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JE55_RS08055 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JE55_RS08070 PF00355 Rieske [2Fe-2S] domain JE55_RS08070 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JE55_RS08095 PF04185 Phosphoesterase family JE55_RS08105 PF05643 Putative bacterial lipoprotein (DUF799) JE55_RS08115 PF03783 Curli production assembly/transport component CsgG JE55_RS08125 PF00561 alpha/beta hydrolase fold JE55_RS08130 PF02203 Tar ligand binding domain homologue JE55_RS08130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS08130 PF00672 HAMP domain JE55_RS08140 PF08031 Berberine and berberine like JE55_RS08140 PF01565 FAD binding domain JE55_RS08145 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JE55_RS08145 PF18416 N-acetylglucosamine binding protein domain 2 JE55_RS08180 PF00589 Phage integrase family JE55_RS08190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JE55_RS08195 PF00580 UvrD/REP helicase N-terminal domain JE55_RS08195 PF13361 UvrD-like helicase C-terminal domain JE55_RS08210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JE55_RS08210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JE55_RS08220 PF08669 Glycine cleavage T-protein C-terminal barrel domain JE55_RS08220 PF01571 Aminomethyltransferase folate-binding domain JE55_RS08225 PF01597 Glycine cleavage H-protein JE55_RS08230 PF02347 Glycine cleavage system P-protein JE55_RS08240 PF03313 Serine dehydratase alpha chain JE55_RS08240 PF03315 Serine dehydratase beta chain JE55_RS08250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JE55_RS08250 PF00205 Thiamine pyrophosphate enzyme, central domain JE55_RS08250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JE55_RS08260 PF12833 Helix-turn-helix domain JE55_RS08265 PF00171 Aldehyde dehydrogenase family JE55_RS08275 PF05985 Ethanolamine ammonia-lyase light chain (EutC) JE55_RS08280 PF06751 Ethanolamine ammonia lyase large subunit (EutB) JE55_RS08285 PF13520 Amino acid permease JE55_RS08305 PF05552 Conserved TM helix JE55_RS08320 PF00403 Heavy-metal-associated domain JE55_RS08325 PF13411 MerR HTH family regulatory protein JE55_RS08335 PF02913 FAD linked oxidases, C-terminal domain JE55_RS08335 PF01565 FAD binding domain JE55_RS08345 PF00497 Bacterial extracellular solute-binding proteins, family 3 JE55_RS08350 PF00155 Aminotransferase class I and II JE55_RS08360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS08360 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS08360 PF18158 Adaptive response protein AidB N-terminal domain JE55_RS08365 PF13193 AMP-binding enzyme C-terminal domain JE55_RS08365 PF00501 AMP-binding enzyme JE55_RS08370 PF13458 Periplasmic binding protein JE55_RS08375 PF01619 Proline dehydrogenase JE55_RS08375 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JE55_RS08375 PF00171 Aldehyde dehydrogenase family JE55_RS08375 PF14850 DNA-binding domain of Proline dehydrogenase JE55_RS08385 PF00270 DEAD/DEAH box helicase JE55_RS08385 PF00271 Helicase conserved C-terminal domain JE55_RS08385 PF17764 3′ DNA-binding domain (3′BD) JE55_RS08385 PF18074 Primosomal protein N C-terminal domain JE55_RS08385 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JE55_RS08390 PF01208 Uroporphyrinogen decarboxylase (URO-D) JE55_RS08395 PF00497 Bacterial extracellular solute-binding proteins, family 3 JE55_RS08400 PF13380 CoA binding domain JE55_RS08405 PF13193 AMP-binding enzyme C-terminal domain JE55_RS08405 PF00501 AMP-binding enzyme JE55_RS08415 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JE55_RS08415 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JE55_RS08420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JE55_RS08420 PF02874 ATP synthase alpha/beta family, beta-barrel domain JE55_RS08425 PF00231 ATP synthase JE55_RS08430 PF02874 ATP synthase alpha/beta family, beta-barrel domain JE55_RS08430 PF00306 ATP synthase alpha/beta chain, C terminal domain JE55_RS08430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JE55_RS08435 PF00213 ATP synthase delta (OSCP) subunit JE55_RS08440 PF00430 ATP synthase B/B' CF(0) JE55_RS08445 PF00137 ATP synthase subunit C JE55_RS08450 PF00119 ATP synthase A chain JE55_RS08460 PF03600 Citrate transporter JE55_RS08465 PF17762 HTH domain found in ParB protein JE55_RS08465 PF02195 ParB-like nuclease domain JE55_RS08470 PF13614 AAA domain JE55_RS08475 PF02527 rRNA small subunit methyltransferase G JE55_RS08480 PF13932 GidA associated domain JE55_RS08480 PF01134 Glucose inhibited division protein A JE55_RS08485 PF00005 ABC transporter JE55_RS08490 PF12399 Branched-chain amino acid ATP-binding cassette transporter JE55_RS08490 PF00005 ABC transporter JE55_RS08515 PF02653 Branched-chain amino acid transport system / permease component JE55_RS08525 PF00005 ABC transporter JE55_RS08530 PF00005 ABC transporter JE55_RS08530 PF12399 Branched-chain amino acid ATP-binding cassette transporter JE55_RS08535 PF00732 GMC oxidoreductase JE55_RS08535 PF05199 GMC oxidoreductase JE55_RS08540 PF00171 Aldehyde dehydrogenase family JE55_RS08545 PF03466 LysR substrate binding domain JE55_RS08545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS08555 PF01037 Lrp/AsnC ligand binding domain JE55_RS08560 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JE55_RS08565 PF01329 Pterin 4 alpha carbinolamine dehydratase JE55_RS08575 PF00486 Transcriptional regulatory protein, C terminal JE55_RS08575 PF00072 Response regulator receiver domain JE55_RS08580 PF08521 Two-component sensor kinase N-terminal JE55_RS08580 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS08580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS08595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JE55_RS08600 PF00958 GMP synthase C terminal domain JE55_RS08600 PF02540 NAD synthase JE55_RS08600 PF00117 Glutamine amidotransferase class-I JE55_RS08610 PF04107 Glutamate-cysteine ligase family 2(GCS2) JE55_RS08620 PF01266 FAD dependent oxidoreductase JE55_RS08620 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JE55_RS08625 PF00216 Bacterial DNA-binding protein JE55_RS08630 PF02492 CobW/HypB/UreG, nucleotide-binding domain JE55_RS08630 PF07683 Cobalamin synthesis protein cobW C-terminal domain JE55_RS08635 PF01464 Transglycosylase SLT domain JE55_RS08640 PF03958 Bacterial type II/III secretion system short domain JE55_RS08640 PF00263 Bacterial type II and III secretion system protein JE55_RS08645 PF00437 Type II/IV secretion system protein JE55_RS08650 PF00482 Type II secretion system (T2SS), protein F JE55_RS08660 PF08334 Type II secretion system (T2SS), protein G JE55_RS08660 PF07963 Prokaryotic N-terminal methylation motif JE55_RS08665 PF12019 Type II transport protein GspH JE55_RS08665 PF07963 Prokaryotic N-terminal methylation motif JE55_RS08670 PF07963 Prokaryotic N-terminal methylation motif JE55_RS08670 PF02501 Type II secretion system (T2SS), protein I JE55_RS08680 PF03934 Type II secretion system (T2SS), protein K JE55_RS08700 PF02321 Outer membrane efflux protein JE55_RS08710 PF01047 MarR family JE55_RS08715 PF07690 Major Facilitator Superfamily JE55_RS08720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS08720 PF03466 LysR substrate binding domain JE55_RS08725 PF03788 LrgA family JE55_RS08730 PF04172 LrgB-like family JE55_RS08740 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JE55_RS08740 PF02154 Flagellar motor switch protein FliM JE55_RS08745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JE55_RS08745 PF16973 Flagellar motor switch protein FliN N-terminal JE55_RS08750 PF04347 Flagellar biosynthesis protein, FliO JE55_RS08755 PF00813 FliP family JE55_RS08760 PF01313 Bacterial export proteins, family 3 JE55_RS08765 PF01311 Bacterial export proteins, family 1 JE55_RS08770 PF09278 MerR, DNA binding JE55_RS08770 PF00376 MerR family regulatory protein JE55_RS08790 PF00005 ABC transporter JE55_RS08795 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS08800 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS08800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS08805 PF00486 Transcriptional regulatory protein, C terminal JE55_RS08805 PF00072 Response regulator receiver domain JE55_RS08810 PF13609 Gram-negative porin JE55_RS08815 PF18273 Type III R-M EcoP15I C-terminal domain JE55_RS08815 PF01555 DNA methylase JE55_RS08820 PF04851 Type III restriction enzyme, res subunit JE55_RS08820 PF08774 VRR-NUC domain JE55_RS08825 PF13609 Gram-negative porin JE55_RS08835 PF00005 ABC transporter JE55_RS08840 PF00005 ABC transporter JE55_RS08840 PF12399 Branched-chain amino acid ATP-binding cassette transporter JE55_RS08845 PF11862 Domain of unknown function (DUF3382) JE55_RS08845 PF02653 Branched-chain amino acid transport system / permease component JE55_RS08860 PF00171 Aldehyde dehydrogenase family JE55_RS08870 PF10703 MoaF N-terminal domain JE55_RS08870 PF17409 MoaF C-terminal domain JE55_RS08880 PF05199 GMC oxidoreductase JE55_RS08880 PF00732 GMC oxidoreductase JE55_RS08885 PF03551 Transcriptional regulator PadR-like family JE55_RS08910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS08910 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS08910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS08915 PF02803 Thiolase, C-terminal domain JE55_RS08915 PF00108 Thiolase, N-terminal domain JE55_RS08920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JE55_RS08920 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS08920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JE55_RS08925 PF02515 CoA-transferase family III JE55_RS08960 PF08281 Sigma-70, region 4 JE55_RS08960 PF04542 Sigma-70 region 2 JE55_RS08965 PF00199 Catalase JE55_RS08975 PF00204 DNA gyrase B JE55_RS08975 PF01751 Toprim domain JE55_RS08975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS08975 PF18053 DNA gyrase B subunit insert domain JE55_RS08975 PF00986 DNA gyrase B subunit, carboxyl terminus JE55_RS08980 PF02768 DNA polymerase III beta subunit, C-terminal domain JE55_RS08980 PF02767 DNA polymerase III beta subunit, central domain JE55_RS08980 PF00712 DNA polymerase III beta subunit, N-terminal domain JE55_RS08985 PF00308 Bacterial dnaA protein JE55_RS08985 PF08299 Bacterial dnaA protein helix-turn-helix JE55_RS08985 PF11638 DnaA N-terminal domain JE55_RS08990 PF00468 Ribosomal protein L34 JE55_RS08995 PF00825 Ribonuclease P JE55_RS09000 PF01809 Putative membrane protein insertion efficiency factor JE55_RS09005 PF14849 YidC periplasmic domain JE55_RS09005 PF02096 60Kd inner membrane protein JE55_RS09015 PF01926 50S ribosome-binding GTPase JE55_RS09015 PF12631 MnmE helical domain JE55_RS09015 PF10396 GTP-binding protein TrmE N-terminus JE55_RS09020 PF13356 Arm DNA-binding domain JE55_RS09020 PF00589 Phage integrase family JE55_RS09050 PF00239 Resolvase, N terminal domain JE55_RS09050 PF02796 Helix-turn-helix domain of resolvase JE55_RS09080 PF13302 Acetyltransferase (GNAT) domain JE55_RS09090 PF07152 YaeQ protein JE55_RS09100 PF02805 Metal binding domain of Ada JE55_RS09100 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JE55_RS09100 PF12833 Helix-turn-helix domain JE55_RS09100 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JE55_RS09105 PF00730 HhH-GPD superfamily base excision DNA repair protein JE55_RS09105 PF12833 Helix-turn-helix domain JE55_RS09105 PF02805 Metal binding domain of Ada JE55_RS09105 PF06029 AlkA N-terminal domain JE55_RS09110 PF04262 Glutamate-cysteine ligase JE55_RS09115 PF04546 Sigma-70, non-essential region JE55_RS09115 PF04542 Sigma-70 region 2 JE55_RS09115 PF04539 Sigma-70 region 3 JE55_RS09115 PF00140 Sigma-70 factor, region 1.2 JE55_RS09115 PF03979 Sigma-70 factor, region 1.1 JE55_RS09115 PF04545 Sigma-70, region 4 JE55_RS09135 PF03466 LysR substrate binding domain JE55_RS09135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS09140 PF13416 Bacterial extracellular solute-binding protein JE55_RS09145 PF00850 Histone deacetylase domain JE55_RS09150 PF00795 Carbon-nitrogen hydrolase JE55_RS09190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JE55_RS09190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JE55_RS09195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS09195 PF03466 LysR substrate binding domain JE55_RS09200 PF01751 Toprim domain JE55_RS09200 PF01131 DNA topoisomerase JE55_RS09210 PF02481 DNA recombination-mediator protein A JE55_RS09210 PF17782 DprA winged helix domain JE55_RS09215 PF01327 Polypeptide deformylase JE55_RS09220 PF00551 Formyl transferase JE55_RS09220 PF02911 Formyl transferase, C-terminal domain JE55_RS09225 PF01810 LysE type translocator JE55_RS09230 PF01435 Peptidase family M48 JE55_RS09240 PF01189 16S rRNA methyltransferase RsmB/F JE55_RS09240 PF01029 NusB family JE55_RS09250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS09250 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS09250 PF00672 HAMP domain JE55_RS09250 PF00989 PAS fold JE55_RS09255 PF00072 Response regulator receiver domain JE55_RS09255 PF02954 Bacterial regulatory protein, Fis family JE55_RS09255 PF00158 Sigma-54 interaction domain JE55_RS09265 PF06508 Queuosine biosynthesis protein QueC JE55_RS09275 PF01242 6-pyruvoyl tetrahydropterin synthase JE55_RS09280 PF03328 HpcH/HpaI aldolase/citrate lyase family JE55_RS09290 PF01098 Cell cycle protein JE55_RS09295 PF03717 Penicillin-binding Protein dimerisation domain JE55_RS09295 PF00905 Penicillin binding protein transpeptidase domain JE55_RS09315 PF02686 Glu-tRNAGln amidotransferase C subunit JE55_RS09320 PF01425 Amidase JE55_RS09325 PF02637 GatB domain JE55_RS09325 PF02934 GatB/GatE catalytic domain JE55_RS09330 PF03976 Polyphosphate kinase 2 (PPK2) JE55_RS09335 PF03372 Endonuclease/Exonuclease/phosphatase family JE55_RS09345 PF00107 Zinc-binding dehydrogenase JE55_RS09345 PF08240 Alcohol dehydrogenase GroES-like domain JE55_RS09350 PF06719 AraC-type transcriptional regulator N-terminus JE55_RS09350 PF12833 Helix-turn-helix domain JE55_RS09360 PF07690 Major Facilitator Superfamily JE55_RS09370 PF00561 alpha/beta hydrolase fold JE55_RS09375 PF00440 Bacterial regulatory proteins, tetR family JE55_RS09385 PF00696 Amino acid kinase family JE55_RS09395 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS09395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS09400 PF00072 Response regulator receiver domain JE55_RS09405 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS09405 PF07724 AAA domain (Cdc48 subfamily) JE55_RS09410 PF00227 Proteasome subunit JE55_RS09415 PF01258 Prokaryotic dksA/traR C4-type zinc finger JE55_RS09420 PF07683 Cobalamin synthesis protein cobW C-terminal domain JE55_RS09420 PF02492 CobW/HypB/UreG, nucleotide-binding domain JE55_RS09425 PF17785 PUA-like domain JE55_RS09425 PF10672 S-adenosylmethionine-dependent methyltransferase JE55_RS09430 PF02899 Phage integrase, N-terminal SAM-like domain JE55_RS09430 PF00589 Phage integrase family JE55_RS09440 PF01678 Diaminopimelate epimerase JE55_RS09445 PF03279 Bacterial lipid A biosynthesis acyltransferase JE55_RS09450 PF00438 S-adenosylmethionine synthetase, N-terminal domain JE55_RS09450 PF02773 S-adenosylmethionine synthetase, C-terminal domain JE55_RS09450 PF02772 S-adenosylmethionine synthetase, central domain JE55_RS09475 PF00248 Aldo/keto reductase family JE55_RS09485 PF00892 EamA-like transporter family JE55_RS09500 PF01636 Phosphotransferase enzyme family JE55_RS09510 PF00171 Aldehyde dehydrogenase family JE55_RS09515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS09515 PF18158 Adaptive response protein AidB N-terminal domain JE55_RS09515 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS09520 PF00732 GMC oxidoreductase JE55_RS09520 PF05199 GMC oxidoreductase JE55_RS09535 PF18269 T3SS EscN ATPase C-terminal domain JE55_RS09535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JE55_RS09545 PF01706 FliG C-terminal domain JE55_RS09545 PF14841 FliG middle domain JE55_RS09545 PF14842 FliG N-terminal domain JE55_RS09550 PF08345 Flagellar M-ring protein C-terminal JE55_RS09550 PF01514 Secretory protein of YscJ/FliF family JE55_RS09555 PF02049 Flagellar hook-basal body complex protein FliE JE55_RS09560 PF02561 Flagellar protein FliS JE55_RS09575 PF01312 FlhB HrpN YscU SpaS Family JE55_RS09590 PF13520 Amino acid permease JE55_RS09595 PF00072 Response regulator receiver domain JE55_RS09595 PF00196 Bacterial regulatory proteins, luxR family JE55_RS09605 PF00175 Oxidoreductase NAD-binding domain JE55_RS09605 PF00970 Oxidoreductase FAD-binding domain JE55_RS09610 PF01810 LysE type translocator JE55_RS09615 PF03372 Endonuclease/Exonuclease/phosphatase family JE55_RS09630 PF05362 Lon protease (S16) C-terminal proteolytic domain JE55_RS09630 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS09635 PF01266 FAD dependent oxidoreductase JE55_RS09640 PF01355 High potential iron-sulfur protein JE55_RS09645 PF07690 Major Facilitator Superfamily JE55_RS09650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JE55_RS09655 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS09660 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS09660 PF12911 N-terminal TM domain of oligopeptide transport permease C JE55_RS09665 PF00005 ABC transporter JE55_RS09665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JE55_RS09670 PF00005 ABC transporter JE55_RS09670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JE55_RS09695 PF03746 LamB/YcsF family JE55_RS09700 PF02626 Carboxyltransferase domain, subdomain A and B JE55_RS09705 PF02682 Carboxyltransferase domain, subdomain C and D JE55_RS09715 PF01812 5-formyltetrahydrofolate cyclo-ligase family JE55_RS09720 PF14718 Soluble lytic murein transglycosylase L domain JE55_RS09720 PF01464 Transglycosylase SLT domain JE55_RS09735 PF01966 HD domain JE55_RS09735 PF12627 Probable RNA and SrmB- binding site of polymerase A JE55_RS09735 PF01743 Poly A polymerase head domain JE55_RS09750 PF04316 Anti-sigma-28 factor, FlgM JE55_RS09755 PF17656 FlgA N-terminal domain JE55_RS09755 PF13144 Chaperone for flagella basal body P-ring formation JE55_RS09760 PF00460 Flagella basal body rod protein JE55_RS09765 PF00460 Flagella basal body rod protein JE55_RS09765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JE55_RS09770 PF13860 FlgD Ig-like domain JE55_RS09770 PF03963 Flagellar hook capping protein - N-terminal region JE55_RS09770 PF13861 FlgD Tudor-like domain JE55_RS09775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JE55_RS09775 PF00460 Flagella basal body rod protein JE55_RS09775 PF07559 Flagellar basal body protein FlaE JE55_RS09780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JE55_RS09780 PF00460 Flagella basal body rod protein JE55_RS09785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JE55_RS09785 PF00460 Flagella basal body rod protein JE55_RS09790 PF02107 Flagellar L-ring protein JE55_RS09795 PF02119 Flagellar P-ring protein JE55_RS09800 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JE55_RS09800 PF10135 Rod binding protein JE55_RS09805 PF07238 PilZ domain JE55_RS09805 PF07317 Flagellar regulator YcgR JE55_RS09810 PF00460 Flagella basal body rod protein JE55_RS09810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JE55_RS09815 PF00669 Bacterial flagellin N-terminal helical region JE55_RS09820 PF00860 Permease family JE55_RS09825 PF03466 LysR substrate binding domain JE55_RS09825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS09845 PF03831 PhnA domain JE55_RS09845 PF08274 PhnA Zinc-Ribbon JE55_RS09855 PF13609 Gram-negative porin JE55_RS09915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JE55_RS09915 PF07992 Pyridine nucleotide-disulphide oxidoreductase JE55_RS09920 PF00764 Arginosuccinate synthase JE55_RS09945 PF04945 YHS domain JE55_RS09950 PF04011 LemA family JE55_RS09955 PF04536 TPM domain JE55_RS09975 PF00529 HlyD membrane-fusion protein of T1SS JE55_RS09975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JE55_RS09980 PF00873 AcrB/AcrD/AcrF family JE55_RS10000 PF01380 SIS domain JE55_RS10005 PF12804 MobA-like NTP transferase domain JE55_RS10005 PF00132 Bacterial transferase hexapeptide (six repeats) JE55_RS10010 PF01171 PP-loop family JE55_RS10040 PF00294 pfkB family carbohydrate kinase JE55_RS10050 PF00356 Bacterial regulatory proteins, lacI family JE55_RS10055 PF02203 Tar ligand binding domain homologue JE55_RS10055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS10055 PF00672 HAMP domain JE55_RS10065 PF13593 SBF-like CPA transporter family (DUF4137) JE55_RS10075 PF13609 Gram-negative porin JE55_RS10080 PF03466 LysR substrate binding domain JE55_RS10080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS10090 PF00561 alpha/beta hydrolase fold JE55_RS10095 PF01037 Lrp/AsnC ligand binding domain JE55_RS10095 PF13404 AsnC-type helix-turn-helix domain JE55_RS10115 PF00682 HMGL-like JE55_RS10120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JE55_RS10140 PF04185 Phosphoesterase family JE55_RS10140 PF05506 Domain of unknown function (DUF756) JE55_RS10150 PF01037 Lrp/AsnC ligand binding domain JE55_RS10175 PF02630 SCO1/SenC JE55_RS10190 PF00701 Dihydrodipicolinate synthetase family JE55_RS10200 PF13340 Putative transposase of IS4/5 family (DUF4096) JE55_RS10220 PF02954 Bacterial regulatory protein, Fis family JE55_RS10220 PF00158 Sigma-54 interaction domain JE55_RS10220 PF00072 Response regulator receiver domain JE55_RS10240 PF07885 Ion channel JE55_RS10240 PF17655 Inward rectifier potassium channel C-terminal domain JE55_RS10250 PF00999 Sodium/hydrogen exchanger family JE55_RS10255 PF05231 MASE1 JE55_RS10255 PF00563 EAL domain JE55_RS10265 PF00245 Alkaline phosphatase JE55_RS10270 PF00245 Alkaline phosphatase JE55_RS10285 PF03932 CutC family JE55_RS10290 PF04055 Radical SAM superfamily JE55_RS10290 PF06968 Biotin and Thiamin Synthesis associated domain JE55_RS10300 PF00155 Aminotransferase class I and II JE55_RS10305 PF00202 Aminotransferase class-III JE55_RS10325 PF02803 Thiolase, C-terminal domain JE55_RS10325 PF00108 Thiolase, N-terminal domain JE55_RS10330 PF00484 Carbonic anhydrase JE55_RS10335 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) JE55_RS10345 PF00005 ABC transporter JE55_RS10345 PF12848 ABC transporter JE55_RS10345 PF16326 ABC transporter C-terminal domain JE55_RS10350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JE55_RS10365 PF00106 short chain dehydrogenase JE55_RS10370 PF13462 Thioredoxin JE55_RS10380 PF00750 tRNA synthetases class I (R) JE55_RS10380 PF05746 DALR anticodon binding domain JE55_RS10380 PF03485 Arginyl tRNA synthetase N terminal domain JE55_RS10390 PF02965 Vitamin B12 dependent methionine synthase, activation domain JE55_RS10390 PF02310 B12 binding domain JE55_RS10390 PF02574 Homocysteine S-methyltransferase JE55_RS10390 PF00809 Pterin binding enzyme JE55_RS10390 PF02607 B12 binding domain JE55_RS10395 PF02310 B12 binding domain JE55_RS10395 PF02965 Vitamin B12 dependent methionine synthase, activation domain JE55_RS10395 PF00809 Pterin binding enzyme JE55_RS10395 PF02574 Homocysteine S-methyltransferase JE55_RS10395 PF02607 B12 binding domain JE55_RS10400 PF12091 Protein of unknown function (DUF3567) JE55_RS10420 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS10440 PF01467 Cytidylyltransferase-like JE55_RS10450 PF03309 Type III pantothenate kinase JE55_RS10465 PF00149 Calcineurin-like phosphoesterase JE55_RS10465 PF02872 5'-nucleotidase, C-terminal domain JE55_RS10470 PF02405 Permease MlaE JE55_RS10475 PF00005 ABC transporter JE55_RS10505 PF00768 D-alanyl-D-alanine carboxypeptidase JE55_RS10505 PF07943 Penicillin-binding protein 5, C-terminal domain JE55_RS10510 PF01063 Amino-transferase class IV JE55_RS10515 PF04359 Protein of unknown function (DUF493) JE55_RS10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS10520 PF03466 LysR substrate binding domain JE55_RS10530 PF03099 Biotin/lipoate A/B protein ligase family JE55_RS10535 PF04055 Radical SAM superfamily JE55_RS10535 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JE55_RS10560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS10560 PF03466 LysR substrate binding domain JE55_RS10565 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JE55_RS10565 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS10565 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JE55_RS10570 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS10570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS10570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS10575 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS10575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS10575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS10580 PF02515 CoA-transferase family III JE55_RS10590 PF00474 Sodium:solute symporter family JE55_RS10595 PF00375 Sodium:dicarboxylate symporter family JE55_RS10600 PF02743 Cache domain JE55_RS10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS10600 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS10605 PF00158 Sigma-54 interaction domain JE55_RS10605 PF00072 Response regulator receiver domain JE55_RS10605 PF02954 Bacterial regulatory protein, Fis family JE55_RS10610 PF00578 AhpC/TSA family JE55_RS10620 PF00550 Phosphopantetheine attachment site JE55_RS10620 PF00975 Thioesterase domain JE55_RS10620 PF13193 AMP-binding enzyme C-terminal domain JE55_RS10620 PF00501 AMP-binding enzyme JE55_RS10620 PF00668 Condensation domain JE55_RS10635 PF13335 Magnesium chelatase, subunit ChlI C-terminal JE55_RS10635 PF01078 Magnesium chelatase, subunit ChlI JE55_RS10640 PF04380 Membrane fusogenic activity JE55_RS10645 PF00543 Nitrogen regulatory protein P-II JE55_RS10650 PF00909 Ammonium Transporter Family JE55_RS10660 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JE55_RS10660 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JE55_RS10670 PF00381 PTS HPr component phosphorylation site JE55_RS10675 PF02896 PEP-utilising enzyme, TIM barrel domain JE55_RS10675 PF00391 PEP-utilising enzyme, mobile domain JE55_RS10675 PF05524 PEP-utilising enzyme, N-terminal JE55_RS10680 PF00899 ThiF family JE55_RS10685 PF13180 PDZ domain JE55_RS10685 PF03572 Peptidase family S41 JE55_RS10690 PF00300 Histidine phosphatase superfamily (branch 1) JE55_RS10695 PF00581 Rhodanese-like domain JE55_RS10700 PF00462 Glutaredoxin JE55_RS10705 PF02556 Preprotein translocase subunit SecB JE55_RS10710 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JE55_RS10710 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JE55_RS10715 PF01661 Macro domain JE55_RS10720 PF00588 SpoU rRNA Methylase family JE55_RS10725 PF00156 Phosphoribosyl transferase domain JE55_RS10730 PF08241 Methyltransferase domain JE55_RS10740 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JE55_RS10740 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JE55_RS10745 PF00115 Cytochrome C and Quinol oxidase polypeptide I JE55_RS10755 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JE55_RS10765 PF00510 Cytochrome c oxidase subunit III JE55_RS10785 PF02628 Cytochrome oxidase assembly protein JE55_RS10790 PF01040 UbiA prenyltransferase family JE55_RS10795 PF02630 SCO1/SenC JE55_RS10805 PF02203 Tar ligand binding domain homologue JE55_RS10805 PF00672 HAMP domain JE55_RS10805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS10810 PF03180 NLPA lipoprotein JE55_RS10830 PF00005 ABC transporter JE55_RS10835 PF03846 Cell division inhibitor SulA JE55_RS10845 PF07733 Bacterial DNA polymerase III alpha NTPase domain JE55_RS10845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JE55_RS10845 PF14579 Helix-hairpin-helix motif JE55_RS10845 PF02811 PHP domain JE55_RS10855 PF07690 Major Facilitator Superfamily JE55_RS10865 PF00202 Aminotransferase class-III JE55_RS10880 PF00005 ABC transporter JE55_RS10880 PF12857 TOBE-like domain JE55_RS10890 PF13649 Methyltransferase domain JE55_RS10900 PF12806 Acetyl-CoA dehydrogenase C-terminal like JE55_RS10900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS10900 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS10900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS10910 PF00501 AMP-binding enzyme JE55_RS10910 PF13193 AMP-binding enzyme C-terminal domain JE55_RS10950 PF00501 AMP-binding enzyme JE55_RS10955 PF03466 LysR substrate binding domain JE55_RS10955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS10960 PF00392 Bacterial regulatory proteins, gntR family JE55_RS10960 PF07702 UTRA domain JE55_RS10965 PF01979 Amidohydrolase family JE55_RS10970 PF01380 SIS domain JE55_RS10975 PF02896 PEP-utilising enzyme, TIM barrel domain JE55_RS10975 PF00381 PTS HPr component phosphorylation site JE55_RS10975 PF05524 PEP-utilising enzyme, N-terminal JE55_RS10975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JE55_RS10975 PF00391 PEP-utilising enzyme, mobile domain JE55_RS10980 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JE55_RS10980 PF02378 Phosphotransferase system, EIIC JE55_RS10980 PF00367 phosphotransferase system, EIIB JE55_RS10985 PF03173 Putative carbohydrate binding domain JE55_RS10985 PF00728 Glycosyl hydrolase family 20, catalytic domain JE55_RS10985 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JE55_RS10985 PF02838 Glycosyl hydrolase family 20, domain 2 JE55_RS10995 PF08173 Membrane bound YbgT-like protein JE55_RS11000 PF02322 Cytochrome bd terminal oxidase subunit II JE55_RS11005 PF01654 Cytochrome bd terminal oxidase subunit I JE55_RS11015 PF13542 Helix-turn-helix domain of transposase family ISL3 JE55_RS11015 PF01610 Transposase JE55_RS11015 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JE55_RS11020 PF00140 Sigma-70 factor, region 1.2 JE55_RS11020 PF04542 Sigma-70 region 2 JE55_RS11020 PF04545 Sigma-70, region 4 JE55_RS11025 PF09411 Lipid A 3-O-deacylase (PagL) JE55_RS11035 PF00682 HMGL-like JE55_RS11035 PF08502 LeuA allosteric (dimerisation) domain JE55_RS11045 PF02885 Glycosyl transferase family, helical bundle domain JE55_RS11050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JE55_RS11050 PF00384 Molybdopterin oxidoreductase JE55_RS11050 PF01568 Molydopterin dinucleotide binding domain JE55_RS11055 PF00355 Rieske [2Fe-2S] domain JE55_RS11060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JE55_RS11060 PF07992 Pyridine nucleotide-disulphide oxidoreductase JE55_RS11060 PF18267 Rubredoxin NAD+ reductase C-terminal domain JE55_RS11060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JE55_RS11060 PF04324 BFD-like [2Fe-2S] binding domain JE55_RS11070 PF02798 Glutathione S-transferase, N-terminal domain JE55_RS11070 PF14497 Glutathione S-transferase, C-terminal domain JE55_RS11075 PF02881 SRP54-type protein, helical bundle domain JE55_RS11075 PF00448 SRP54-type protein, GTPase domain JE55_RS11085 PF01467 Cytidylyltransferase-like JE55_RS11090 PF00037 4Fe-4S binding domain JE55_RS11095 PF00155 Aminotransferase class I and II JE55_RS11100 PF01195 Peptidyl-tRNA hydrolase JE55_RS11105 PF14693 Ribosomal protein TL5, C-terminal domain JE55_RS11105 PF01386 Ribosomal L25p family JE55_RS11110 PF14572 Phosphoribosyl synthetase-associated domain JE55_RS11110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JE55_RS11120 PF00288 GHMP kinases N terminal domain JE55_RS11120 PF08544 GHMP kinases C terminal JE55_RS11125 PF03550 Outer membrane lipoprotein LolB JE55_RS11135 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JE55_RS11135 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JE55_RS11135 PF06827 Zinc finger found in FPG and IleRS JE55_RS11140 PF10576 Iron-sulfur binding domain of endonuclease III JE55_RS11140 PF00730 HhH-GPD superfamily base excision DNA repair protein JE55_RS11140 PF14815 NUDIX domain JE55_RS11140 PF00633 Helix-hairpin-helix motif JE55_RS11150 PF03668 P-loop ATPase protein family JE55_RS11155 PF02603 HPr Serine kinase N terminus JE55_RS11155 PF07475 HPr Serine kinase C-terminal domain JE55_RS11160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JE55_RS11165 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JE55_RS11170 PF04552 Sigma-54, DNA binding domain JE55_RS11170 PF00309 Sigma-54 factor, Activator interacting domain (AID) JE55_RS11170 PF04963 Sigma-54 factor, core binding domain JE55_RS11175 PF00005 ABC transporter JE55_RS11175 PF12399 Branched-chain amino acid ATP-binding cassette transporter JE55_RS11195 PF01380 SIS domain JE55_RS11195 PF00571 CBS domain JE55_RS11200 PF00999 Sodium/hydrogen exchanger family JE55_RS11200 PF02080 TrkA-C domain JE55_RS11200 PF02254 TrkA-N domain JE55_RS11205 PF00156 Phosphoribosyl transferase domain JE55_RS11210 PF01810 LysE type translocator JE55_RS11220 PF00551 Formyl transferase JE55_RS11230 PF17760 UvrA interaction domain JE55_RS11230 PF17755 UvrA DNA-binding domain JE55_RS11235 PF07690 Major Facilitator Superfamily JE55_RS11240 PF00436 Single-strand binding protein family JE55_RS11270 PF13333 Integrase core domain JE55_RS11270 PF00665 Integrase core domain JE55_RS11270 PF13276 HTH-like domain JE55_RS11280 PF02627 Carboxymuconolactone decarboxylase family JE55_RS11315 PF00348 Polyprenyl synthetase JE55_RS11350 PF00069 Protein kinase domain JE55_RS11370 PF00596 Class II Aldolase and Adducin N-terminal domain JE55_RS11375 PF08448 PAS fold JE55_RS11375 PF00563 EAL domain JE55_RS11375 PF00990 Diguanylate cyclase, GGDEF domain JE55_RS11390 PF00483 Nucleotidyl transferase JE55_RS11390 PF01050 Mannose-6-phosphate isomerase JE55_RS11400 PF00534 Glycosyl transferases group 1 JE55_RS11400 PF13439 Glycosyltransferase Family 4 JE55_RS11410 PF02954 Bacterial regulatory protein, Fis family JE55_RS11410 PF00158 Sigma-54 interaction domain JE55_RS11410 PF00072 Response regulator receiver domain JE55_RS11440 PF00550 Phosphopantetheine attachment site JE55_RS11455 PF02397 Bacterial sugar transferase JE55_RS11460 PF02563 Polysaccharide biosynthesis/export protein JE55_RS11460 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JE55_RS11460 PF10531 SLBB domain JE55_RS11465 PF00534 Glycosyl transferases group 1 JE55_RS11465 PF13439 Glycosyltransferase Family 4 JE55_RS11485 PF07859 alpha/beta hydrolase fold JE55_RS11495 PF07690 Major Facilitator Superfamily JE55_RS11515 PF01380 SIS domain JE55_RS11515 PF01418 Helix-turn-helix domain, rpiR family JE55_RS11520 PF07969 Amidohydrolase family JE55_RS11525 PF01042 Endoribonuclease L-PSP JE55_RS11530 PF14489 QueF-like protein JE55_RS11530 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JE55_RS11535 PF00291 Pyridoxal-phosphate dependent enzyme JE55_RS11535 PF00585 C-terminal regulatory domain of Threonine dehydratase JE55_RS11560 PF01209 ubiE/COQ5 methyltransferase family JE55_RS11575 PF03109 ABC1 family JE55_RS11595 PF01336 OB-fold nucleic acid binding domain JE55_RS11595 PF02938 GAD domain JE55_RS11595 PF00152 tRNA synthetases class II (D, K and N) JE55_RS11600 PF00293 NUDIX domain JE55_RS11605 PF13091 PLD-like domain JE55_RS11615 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS11615 PF12806 Acetyl-CoA dehydrogenase C-terminal like JE55_RS11615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS11615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS11620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JE55_RS11620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JE55_RS11620 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS11625 PF00108 Thiolase, N-terminal domain JE55_RS11625 PF02803 Thiolase, C-terminal domain JE55_RS11630 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS11635 PF02634 FdhD/NarQ family JE55_RS11645 PF03061 Thioesterase superfamily JE55_RS11650 PF00005 ABC transporter JE55_RS11650 PF00664 ABC transporter transmembrane region JE55_RS11660 PF00483 Nucleotidyl transferase JE55_RS11665 PF01636 Phosphotransferase enzyme family JE55_RS11670 PF04453 LPS transport system D JE55_RS11675 PF09312 SurA N-terminal domain JE55_RS11675 PF00639 PPIC-type PPIASE domain JE55_RS11680 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JE55_RS11685 PF00398 Ribosomal RNA adenine dimethylase JE55_RS11695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JE55_RS11705 PF01553 Acyltransferase JE55_RS11715 PF05746 DALR anticodon binding domain JE55_RS11715 PF02092 Glycyl-tRNA synthetase beta subunit JE55_RS11720 PF02091 Glycyl-tRNA synthetase alpha subunit JE55_RS11725 PF00795 Carbon-nitrogen hydrolase JE55_RS11730 PF00571 CBS domain JE55_RS11730 PF03471 Transporter associated domain JE55_RS11740 PF04752 ChaC-like protein JE55_RS11745 PF02130 Uncharacterized protein family UPF0054 JE55_RS11750 PF02562 PhoH-like protein JE55_RS11755 PF01938 TRAM domain JE55_RS11755 PF00919 Uncharacterized protein family UPF0004 JE55_RS11755 PF04055 Radical SAM superfamily JE55_RS11760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS11760 PF03466 LysR substrate binding domain JE55_RS11765 PF07690 Major Facilitator Superfamily JE55_RS11770 PF07883 Cupin domain JE55_RS11770 PF01381 Helix-turn-helix JE55_RS11775 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JE55_RS11780 PF13419 Haloacid dehalogenase-like hydrolase JE55_RS11790 PF00206 Lyase JE55_RS11790 PF02655 ATP-grasp domain JE55_RS11795 PF13537 Glutamine amidotransferase domain JE55_RS11795 PF00733 Asparagine synthase JE55_RS11800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JE55_RS11805 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JE55_RS11815 PF00230 Major intrinsic protein JE55_RS11820 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JE55_RS11820 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JE55_RS11825 PF01266 FAD dependent oxidoreductase JE55_RS11825 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JE55_RS11840 PF08220 DeoR-like helix-turn-helix domain JE55_RS11840 PF00455 DeoR C terminal sensor domain JE55_RS11860 PF00271 Helicase conserved C-terminal domain JE55_RS11860 PF00270 DEAD/DEAH box helicase JE55_RS11865 PF00034 Cytochrome c JE55_RS11865 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JE55_RS11880 PF13378 Enolase C-terminal domain-like JE55_RS11880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JE55_RS11895 PF00149 Calcineurin-like phosphoesterase JE55_RS11895 PF16656 Purple acid Phosphatase, N-terminal domain JE55_RS11900 PF00990 Diguanylate cyclase, GGDEF domain JE55_RS11900 PF00563 EAL domain JE55_RS11900 PF03707 Bacterial signalling protein N terminal repeat JE55_RS11905 PF00158 Sigma-54 interaction domain JE55_RS11905 PF00072 Response regulator receiver domain JE55_RS11905 PF02954 Bacterial regulatory protein, Fis family JE55_RS11920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS11920 PF08447 PAS fold JE55_RS11940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS11940 PF03466 LysR substrate binding domain JE55_RS11945 PF00581 Rhodanese-like domain JE55_RS11960 PF00005 ABC transporter JE55_RS11980 PF05139 Erythromycin esterase JE55_RS11980 PF00156 Phosphoribosyl transferase domain JE55_RS11985 PF00156 Phosphoribosyl transferase domain JE55_RS11985 PF01738 Dienelactone hydrolase family JE55_RS11990 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JE55_RS11990 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JE55_RS11995 PF05139 Erythromycin esterase JE55_RS11995 PF00156 Phosphoribosyl transferase domain JE55_RS12010 PF00034 Cytochrome c JE55_RS12010 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JE55_RS12020 PF00115 Cytochrome C and Quinol oxidase polypeptide I JE55_RS12025 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JE55_RS12030 PF00205 Thiamine pyrophosphate enzyme, central domain JE55_RS12030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JE55_RS12030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JE55_RS12035 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JE55_RS12035 PF13378 Enolase C-terminal domain-like JE55_RS12050 PF00732 GMC oxidoreductase JE55_RS12050 PF05199 GMC oxidoreductase JE55_RS12065 PF01804 Penicillin amidase JE55_RS12070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS12070 PF03466 LysR substrate binding domain JE55_RS12075 PF09308 LuxQ, periplasmic JE55_RS12075 PF00072 Response regulator receiver domain JE55_RS12075 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS12075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS12120 PF01527 Transposase JE55_RS12125 PF01548 Transposase JE55_RS12125 PF02371 Transposase IS116/IS110/IS902 family JE55_RS12130 PF13683 Integrase core domain JE55_RS12130 PF13276 HTH-like domain JE55_RS12150 PF08946 Osmosensory transporter coiled coil JE55_RS12150 PF00083 Sugar (and other) transporter JE55_RS12155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS12155 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS12160 PF00072 Response regulator receiver domain JE55_RS12160 PF00486 Transcriptional regulatory protein, C terminal JE55_RS12165 PF00154 recA bacterial DNA recombination protein JE55_RS12170 PF02631 RecX family JE55_RS12180 PF08442 ATP-grasp domain JE55_RS12180 PF00549 CoA-ligase JE55_RS12185 PF02629 CoA binding domain JE55_RS12185 PF00549 CoA-ligase JE55_RS12190 PF03741 Integral membrane protein TerC family JE55_RS12195 PF00114 Pilin (bacterial filament) JE55_RS12195 PF07963 Prokaryotic N-terminal methylation motif JE55_RS12200 PF11846 Virulence factor membrane-bound polymerase, C-terminal JE55_RS12200 PF15864 Protein glycosylation ligase JE55_RS12200 PF04932 O-Antigen ligase JE55_RS12220 PF01967 MoaC family JE55_RS12225 PF13181 Tetratricopeptide repeat JE55_RS12225 PF01435 Peptidase family M48 JE55_RS12235 PF00561 alpha/beta hydrolase fold JE55_RS12245 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JE55_RS12255 PF01063 Amino-transferase class IV JE55_RS12270 PF00162 Phosphoglycerate kinase JE55_RS12275 PF02887 Pyruvate kinase, alpha/beta domain JE55_RS12275 PF00224 Pyruvate kinase, barrel domain JE55_RS12280 PF01116 Fructose-bisphosphate aldolase class-II JE55_RS12285 PF01259 SAICAR synthetase JE55_RS12290 PF00731 AIR carboxylase JE55_RS12295 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JE55_RS12295 PF02222 ATP-grasp domain JE55_RS12300 PF03481 Putative GTP-binding controlling metal-binding JE55_RS12300 PF01300 Telomere recombination JE55_RS12310 PF04116 Fatty acid hydroxylase superfamily JE55_RS12315 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JE55_RS12320 PF00072 Response regulator receiver domain JE55_RS12320 PF00486 Transcriptional regulatory protein, C terminal JE55_RS12325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS12325 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS12335 PF13180 PDZ domain JE55_RS12355 PF00440 Bacterial regulatory proteins, tetR family JE55_RS12355 PF08361 MAATS-type transcriptional repressor, C-terminal region JE55_RS12360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JE55_RS12360 PF00529 HlyD membrane-fusion protein of T1SS JE55_RS12365 PF00873 AcrB/AcrD/AcrF family JE55_RS12370 PF02321 Outer membrane efflux protein JE55_RS12380 PF00860 Permease family JE55_RS12385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JE55_RS12385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JE55_RS12390 PF12833 Helix-turn-helix domain JE55_RS12390 PF01965 DJ-1/PfpI family JE55_RS12395 PF08240 Alcohol dehydrogenase GroES-like domain JE55_RS12395 PF00107 Zinc-binding dehydrogenase JE55_RS12400 PF00756 Putative esterase JE55_RS12405 PF00950 ABC 3 transport family JE55_RS12410 PF00005 ABC transporter JE55_RS12420 PF01475 Ferric uptake regulator family JE55_RS12430 PF00294 pfkB family carbohydrate kinase JE55_RS12435 PF08013 Tagatose 6 phosphate kinase JE55_RS12445 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS12450 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS12455 PF13419 Haloacid dehalogenase-like hydrolase JE55_RS12460 PF08402 TOBE domain JE55_RS12460 PF00005 ABC transporter JE55_RS12470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS12470 PF03466 LysR substrate binding domain JE55_RS12475 PF00144 Beta-lactamase JE55_RS12480 PF07690 Major Facilitator Superfamily JE55_RS12485 PF04198 Putative sugar-binding domain JE55_RS12490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JE55_RS12490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JE55_RS12495 PF01232 Mannitol dehydrogenase Rossmann domain JE55_RS12495 PF08125 Mannitol dehydrogenase C-terminal domain JE55_RS12500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS12500 PF03466 LysR substrate binding domain JE55_RS12505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JE55_RS12505 PF00205 Thiamine pyrophosphate enzyme, central domain JE55_RS12505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JE55_RS12510 PF00171 Aldehyde dehydrogenase family JE55_RS12515 PF02558 Ketopantoate reductase PanE/ApbA JE55_RS12515 PF08546 Ketopantoate reductase PanE/ApbA C terminal JE55_RS12530 PF03301 Tryptophan 2,3-dioxygenase JE55_RS12535 PF00266 Aminotransferase class-V JE55_RS12540 PF04199 Putative cyclase JE55_RS12545 PF01037 Lrp/AsnC ligand binding domain JE55_RS12550 PF01613 Flavin reductase like domain JE55_RS12560 PF01625 Peptide methionine sulfoxide reductase JE55_RS12580 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JE55_RS12580 PF01243 Pyridoxamine 5'-phosphate oxidase JE55_RS12585 PF00899 ThiF family JE55_RS12590 PF00085 Thioredoxin JE55_RS12595 PF05726 Pirin C-terminal cupin domain JE55_RS12595 PF02678 Pirin JE55_RS12600 PF00892 EamA-like transporter family JE55_RS12605 PF11741 AMIN domain JE55_RS12605 PF01520 N-acetylmuramoyl-L-alanine amidase JE55_RS12610 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JE55_RS12615 PF08331 Domain of unknown function (DUF1730) JE55_RS12625 PF00589 Phage integrase family JE55_RS12625 PF02899 Phage integrase, N-terminal SAM-like domain JE55_RS12630 PF00501 AMP-binding enzyme JE55_RS12630 PF13193 AMP-binding enzyme C-terminal domain JE55_RS12635 PF04073 Aminoacyl-tRNA editing domain JE55_RS12640 PF02660 Glycerol-3-phosphate acyltransferase JE55_RS12645 PF04461 Protein of unknown function (DUF520) JE55_RS12650 PF01565 FAD binding domain JE55_RS12650 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JE55_RS12655 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JE55_RS12655 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JE55_RS12665 PF01649 Ribosomal protein S20 JE55_RS12670 PF03023 Lipid II flippase MurJ JE55_RS12675 PF13369 Transglutaminase-like superfamily JE55_RS12680 PF00106 short chain dehydrogenase JE55_RS12685 PF05191 Adenylate kinase, active site lid JE55_RS12690 PF02348 Cytidylyltransferase JE55_RS12695 PF03966 Trm112p-like protein JE55_RS12700 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JE55_RS12705 PF13742 OB-fold nucleic acid binding domain JE55_RS12705 PF02601 Exonuclease VII, large subunit JE55_RS12710 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JE55_RS12710 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JE55_RS12755 PF07690 Major Facilitator Superfamily JE55_RS12765 PF00285 Citrate synthase, C-terminal domain JE55_RS12775 PF07702 UTRA domain JE55_RS12775 PF00392 Bacterial regulatory proteins, gntR family JE55_RS12780 PF00248 Aldo/keto reductase family JE55_RS12800 PF00009 Elongation factor Tu GTP binding domain JE55_RS12800 PF03764 Elongation factor G, domain IV JE55_RS12800 PF14492 Elongation Factor G, domain II JE55_RS12800 PF03144 Elongation factor Tu domain 2 JE55_RS12800 PF00679 Elongation factor G C-terminus JE55_RS12810 PF00849 RNA pseudouridylate synthase JE55_RS12815 PF00180 Isocitrate/isopropylmalate dehydrogenase JE55_RS12820 PF07731 Multicopper oxidase JE55_RS12820 PF07732 Multicopper oxidase JE55_RS12825 PF00313 'Cold-shock' DNA-binding domain JE55_RS12830 PF02617 ATP-dependent Clp protease adaptor protein ClpS JE55_RS12835 PF07724 AAA domain (Cdc48 subfamily) JE55_RS12835 PF17871 AAA lid domain JE55_RS12835 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS12835 PF10431 C-terminal, D2-small domain, of ClpB protein JE55_RS12835 PF02861 Clp amino terminal domain, pathogenicity island component JE55_RS12840 PF00324 Amino acid permease JE55_RS12855 PF00692 dUTPase JE55_RS12860 PF04127 DNA / pantothenate metabolism flavoprotein JE55_RS12860 PF02441 Flavoprotein JE55_RS12865 PF01252 Signal peptidase (SPase) II JE55_RS12870 PF08264 Anticodon-binding domain of tRNA JE55_RS12870 PF00133 tRNA synthetases class I (I, L, M and V) JE55_RS12870 PF06827 Zinc finger found in FPG and IleRS JE55_RS12875 PF01687 Riboflavin kinase JE55_RS12875 PF06574 FAD synthetase JE55_RS12880 PF00551 Formyl transferase JE55_RS12885 PF01189 16S rRNA methyltransferase RsmB/F JE55_RS12885 PF01029 NusB family JE55_RS12890 PF12794 Mechanosensitive ion channel inner membrane domain 1 JE55_RS12890 PF00924 Mechanosensitive ion channel JE55_RS12890 PF12795 Mechanosensitive ion channel porin domain JE55_RS12900 PF02445 Quinolinate synthetase A protein JE55_RS12905 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JE55_RS12905 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JE55_RS12915 PF02910 Fumarate reductase flavoprotein C-term JE55_RS12915 PF00890 FAD binding domain JE55_RS12920 PF00471 Ribosomal protein L33 JE55_RS12925 PF00830 Ribosomal L28 family JE55_RS12930 PF04002 RadC-like JAB domain JE55_RS12935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JE55_RS12940 PF02401 LytB protein JE55_RS12950 PF02653 Branched-chain amino acid transport system / permease component JE55_RS12955 PF02653 Branched-chain amino acid transport system / permease component JE55_RS12955 PF11862 Domain of unknown function (DUF3382) JE55_RS12960 PF00005 ABC transporter JE55_RS12960 PF12399 Branched-chain amino acid ATP-binding cassette transporter JE55_RS12965 PF00005 ABC transporter JE55_RS12975 PF00583 Acetyltransferase (GNAT) family JE55_RS12980 PF00202 Aminotransferase class-III JE55_RS12985 PF00970 Oxidoreductase FAD-binding domain JE55_RS12985 PF00111 2Fe-2S iron-sulfur cluster binding domain JE55_RS12985 PF00175 Oxidoreductase NAD-binding domain JE55_RS13000 PF00849 RNA pseudouridylate synthase JE55_RS13000 PF01479 S4 domain JE55_RS13010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS13010 PF03466 LysR substrate binding domain JE55_RS13015 PF03466 LysR substrate binding domain JE55_RS13015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS13020 PF00561 alpha/beta hydrolase fold JE55_RS13025 PF03473 MOSC domain JE55_RS13025 PF03475 3-alpha domain JE55_RS13030 PF00701 Dihydrodipicolinate synthetase family JE55_RS13035 PF00596 Class II Aldolase and Adducin N-terminal domain JE55_RS13040 PF01381 Helix-turn-helix JE55_RS13040 PF08671 Anti-repressor SinI JE55_RS13060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS13060 PF03466 LysR substrate binding domain JE55_RS13075 PF01507 Phosphoadenosine phosphosulfate reductase family JE55_RS13080 PF01507 Phosphoadenosine phosphosulfate reductase family JE55_RS13085 PF00009 Elongation factor Tu GTP binding domain JE55_RS13090 PF10414 Sirohaem synthase dimerisation region JE55_RS13090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JE55_RS13090 PF14824 Sirohaem biosynthesis protein central JE55_RS13110 PF03739 Lipopolysaccharide export system permease LptF/LptG JE55_RS13115 PF00883 Cytosol aminopeptidase family, catalytic domain JE55_RS13115 PF02789 Cytosol aminopeptidase family, N-terminal domain JE55_RS13120 PF04364 DNA polymerase III chi subunit, HolC JE55_RS13130 PF00034 Cytochrome c JE55_RS13135 PF00920 Dehydratase family JE55_RS13140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS13140 PF03466 LysR substrate binding domain JE55_RS13145 PF01790 Prolipoprotein diacylglyceryl transferase JE55_RS13160 PF05164 Cell division protein ZapA JE55_RS13170 PF00593 TonB dependent receptor JE55_RS13170 PF07715 TonB-dependent Receptor Plug Domain JE55_RS13175 PF01032 FecCD transport family JE55_RS13180 PF00005 ABC transporter JE55_RS13185 PF02277 Phosphoribosyltransferase JE55_RS13190 PF02654 Cobalamin-5-phosphate synthase JE55_RS13205 PF01497 Periplasmic binding protein JE55_RS13210 PF00155 Aminotransferase class I and II JE55_RS13215 PF17113 Regulatory signalling modulator protein AmpE JE55_RS13215 PF03186 CobD/Cbib protein JE55_RS13220 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JE55_RS13225 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JE55_RS13225 PF07685 CobB/CobQ-like glutamine amidotransferase domain JE55_RS13230 PF07681 DoxX JE55_RS13235 PF10609 NUBPL iron-transfer P-loop NTPase JE55_RS13240 PF02261 Aspartate decarboxylase JE55_RS13245 PF02569 Pantoate-beta-alanine ligase JE55_RS13250 PF02616 Segregation and condensation protein ScpA JE55_RS13260 PF17243 POTRA domain TamA domain 1 JE55_RS13260 PF07244 Surface antigen variable number repeat JE55_RS13260 PF01103 Surface antigen JE55_RS13265 PF04357 TamB, inner membrane protein subunit of TAM complex JE55_RS13275 PF00891 O-methyltransferase domain JE55_RS13275 PF16864 Dimerisation domain JE55_RS13280 PF01588 Putative tRNA binding domain JE55_RS13280 PF09334 tRNA synthetases class I (M) JE55_RS13285 PF00691 OmpA family JE55_RS13285 PF05736 OprF membrane domain JE55_RS13290 PF10609 NUBPL iron-transfer P-loop NTPase JE55_RS13300 PF00692 dUTPase JE55_RS13305 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JE55_RS13305 PF01276 Orn/Lys/Arg decarboxylase, major domain JE55_RS13305 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JE55_RS13315 PF13419 Haloacid dehalogenase-like hydrolase JE55_RS13320 PF14698 Argininosuccinate lyase C-terminal JE55_RS13320 PF00206 Lyase JE55_RS13350 PF08241 Methyltransferase domain JE55_RS13360 PF00311 Phosphoenolpyruvate carboxylase JE55_RS13370 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JE55_RS13370 PF03900 Porphobilinogen deaminase, C-terminal domain JE55_RS13375 PF02602 Uroporphyrinogen-III synthase HemD JE55_RS13385 PF07690 Major Facilitator Superfamily JE55_RS13395 PF00171 Aldehyde dehydrogenase family JE55_RS13400 PF00719 Inorganic pyrophosphatase JE55_RS13405 PF01541 GIY-YIG catalytic domain JE55_RS13410 PF14310 Fibronectin type III-like domain JE55_RS13410 PF00933 Glycosyl hydrolase family 3 N terminal domain JE55_RS13410 PF01915 Glycosyl hydrolase family 3 C-terminal domain JE55_RS13420 PF00795 Carbon-nitrogen hydrolase JE55_RS13420 PF02540 NAD synthase JE55_RS13425 PF00543 Nitrogen regulatory protein P-II JE55_RS13430 PF13609 Gram-negative porin JE55_RS13435 PF00005 ABC transporter JE55_RS13440 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS13445 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS13450 PF00497 Bacterial extracellular solute-binding proteins, family 3 JE55_RS13460 PF02678 Pirin JE55_RS13460 PF17954 Quercetinase C-terminal cupin domain JE55_RS13470 PF00072 Response regulator receiver domain JE55_RS13470 PF00486 Transcriptional regulatory protein, C terminal JE55_RS13475 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS13475 PF00672 HAMP domain JE55_RS13475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS13485 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS13490 PF00005 ABC transporter JE55_RS13510 PF00982 Glycosyltransferase family 20 JE55_RS13525 PF07690 Major Facilitator Superfamily JE55_RS13530 PF01161 Phosphatidylethanolamine-binding protein JE55_RS13550 PF03974 Ecotin JE55_RS13555 PF00768 D-alanyl-D-alanine carboxypeptidase JE55_RS13570 PF05860 haemagglutination activity domain JE55_RS13570 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain JE55_RS13570 PF13018 Extended Signal Peptide of Type V secretion system JE55_RS13570 PF05594 Haemagluttinin repeat JE55_RS13570 PF13332 Hemagglutinin repeat JE55_RS13575 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB JE55_RS13575 PF08479 POTRA domain, ShlB-type JE55_RS13575 PF17287 POTRA domain JE55_RS13620 PF01176 Translation initiation factor 1A / IF-1 JE55_RS13640 PF00301 Rubredoxin JE55_RS13650 PF12848 ABC transporter JE55_RS13650 PF16326 ABC transporter C-terminal domain JE55_RS13650 PF00005 ABC transporter JE55_RS13655 PF00204 DNA gyrase B JE55_RS13655 PF00986 DNA gyrase B subunit, carboxyl terminus JE55_RS13655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS13655 PF01751 Toprim domain JE55_RS13660 PF00521 DNA gyrase/topoisomerase IV, subunit A JE55_RS13675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS13675 PF03466 LysR substrate binding domain JE55_RS13685 PF03466 LysR substrate binding domain JE55_RS13685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS13690 PF00083 Sugar (and other) transporter JE55_RS13690 PF07690 Major Facilitator Superfamily JE55_RS13695 PF01546 Peptidase family M20/M25/M40 JE55_RS13695 PF07687 Peptidase dimerisation domain JE55_RS13700 PF00850 Histone deacetylase domain JE55_RS13715 PF00990 Diguanylate cyclase, GGDEF domain JE55_RS13715 PF03707 Bacterial signalling protein N terminal repeat JE55_RS13715 PF00563 EAL domain JE55_RS13720 PF02567 Phenazine biosynthesis-like protein JE55_RS13730 PF00155 Aminotransferase class I and II JE55_RS13735 PF00892 EamA-like transporter family JE55_RS13745 PF00155 Aminotransferase class I and II JE55_RS13750 PF00183 Hsp90 protein JE55_RS13750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS13755 PF04345 Chorismate lyase JE55_RS13765 PF13847 Methyltransferase domain JE55_RS13775 PF00474 Sodium:solute symporter family JE55_RS13780 PF06983 3-demethylubiquinone-9 3-methyltransferase JE55_RS13785 PF00923 Transaldolase/Fructose-6-phosphate aldolase JE55_RS13790 PF03594 Benzoate membrane transport protein JE55_RS13800 PF02861 Clp amino terminal domain, pathogenicity island component JE55_RS13800 PF07724 AAA domain (Cdc48 subfamily) JE55_RS13800 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS13800 PF10431 C-terminal, D2-small domain, of ClpB protein JE55_RS13800 PF17871 AAA lid domain JE55_RS13805 PF00034 Cytochrome c JE55_RS13810 PF00034 Cytochrome c JE55_RS13820 PF00892 EamA-like transporter family JE55_RS13825 PF10576 Iron-sulfur binding domain of endonuclease III JE55_RS13825 PF00633 Helix-hairpin-helix motif JE55_RS13825 PF00730 HhH-GPD superfamily base excision DNA repair protein JE55_RS13830 PF04060 Putative Fe-S cluster JE55_RS13835 PF17938 Tetracyclin repressor-like, C-terminal domain JE55_RS13835 PF00440 Bacterial regulatory proteins, tetR family JE55_RS13845 PF00723 Glycosyl hydrolases family 15 JE55_RS13850 PF10282 Lactonase, 7-bladed beta-propeller JE55_RS13855 PF01580 FtsK/SpoIIIE family JE55_RS13855 PF09397 Ftsk gamma domain JE55_RS13855 PF17854 FtsK alpha domain JE55_RS13855 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JE55_RS13870 PF01370 NAD dependent epimerase/dehydratase family JE55_RS13870 PF02222 ATP-grasp domain JE55_RS13880 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme JE55_RS13885 PF00271 Helicase conserved C-terminal domain JE55_RS13885 PF00270 DEAD/DEAH box helicase JE55_RS13890 PF00749 tRNA synthetases class I (E and Q), catalytic domain JE55_RS13895 PF17773 UPF0176 acylphosphatase like domain JE55_RS13905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JE55_RS13905 PF14579 Helix-hairpin-helix motif JE55_RS13905 PF07733 Bacterial DNA polymerase III alpha NTPase domain JE55_RS13905 PF02811 PHP domain JE55_RS13905 PF01336 OB-fold nucleic acid binding domain JE55_RS13910 PF00664 ABC transporter transmembrane region JE55_RS13910 PF00005 ABC transporter JE55_RS13915 PF13439 Glycosyltransferase Family 4 JE55_RS13915 PF00534 Glycosyl transferases group 1 JE55_RS13930 PF00534 Glycosyl transferases group 1 JE55_RS13930 PF13439 Glycosyltransferase Family 4 JE55_RS13935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JE55_RS13940 PF00535 Glycosyl transferase family 2 JE55_RS13955 PF07690 Major Facilitator Superfamily JE55_RS13965 PF02627 Carboxymuconolactone decarboxylase family JE55_RS13970 PF12680 SnoaL-like domain JE55_RS13970 PF04542 Sigma-70 region 2 JE55_RS13970 PF08281 Sigma-70, region 4 JE55_RS14010 PF00860 Permease family JE55_RS14115 PF00575 S1 RNA binding domain JE55_RS14115 PF10150 Ribonuclease E/G family JE55_RS14120 PF02545 Maf-like protein JE55_RS14125 PF02590 Predicted SPOUT methyltransferase JE55_RS14135 PF01467 Cytidylyltransferase-like JE55_RS14140 PF01218 Coproporphyrinogen III oxidase JE55_RS14145 PF02843 Phosphoribosylglycinamide synthetase, C domain JE55_RS14145 PF02844 Phosphoribosylglycinamide synthetase, N domain JE55_RS14145 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JE55_RS14150 PF01709 Transcriptional regulator JE55_RS14165 PF02142 MGS-like domain JE55_RS14170 PF00107 Zinc-binding dehydrogenase JE55_RS14170 PF08240 Alcohol dehydrogenase GroES-like domain JE55_RS14180 PF03814 Potassium-transporting ATPase A subunit JE55_RS14190 PF02669 K+-transporting ATPase, c chain JE55_RS14200 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS14200 PF02702 Osmosensitive K+ channel His kinase sensor domain JE55_RS14200 PF13492 GAF domain JE55_RS14200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS14200 PF13493 Domain of unknown function (DUF4118) JE55_RS14205 PF00486 Transcriptional regulatory protein, C terminal JE55_RS14205 PF00072 Response regulator receiver domain JE55_RS14215 PF00893 Small Multidrug Resistance protein JE55_RS14235 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JE55_RS14235 PF02272 DHHA1 domain JE55_RS14235 PF01411 tRNA synthetases class II (A) JE55_RS14245 PF01425 Amidase JE55_RS14250 PF07690 Major Facilitator Superfamily JE55_RS14255 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JE55_RS14265 PF03641 Possible lysine decarboxylase JE55_RS14270 PF08360 QacR-like protein, C-terminal region JE55_RS14270 PF00440 Bacterial regulatory proteins, tetR family JE55_RS14275 PF01219 Prokaryotic diacylglycerol kinase JE55_RS14280 PF00534 Glycosyl transferases group 1 JE55_RS14280 PF13439 Glycosyltransferase Family 4 JE55_RS14310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JE55_RS14310 PF00205 Thiamine pyrophosphate enzyme, central domain JE55_RS14310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JE55_RS14315 PF10369 Small subunit of acetolactate synthase JE55_RS14320 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JE55_RS14320 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JE55_RS14325 PF02666 Phosphatidylserine decarboxylase JE55_RS14330 PF01066 CDP-alcohol phosphatidyltransferase JE55_RS14335 PF08502 LeuA allosteric (dimerisation) domain JE55_RS14335 PF00682 HMGL-like JE55_RS14340 PF01740 STAS domain JE55_RS14340 PF00916 Sulfate permease family JE55_RS14345 PF00484 Carbonic anhydrase JE55_RS14360 PF13458 Periplasmic binding protein JE55_RS14365 PF00312 Ribosomal protein S15 JE55_RS14370 PF00575 S1 RNA binding domain JE55_RS14370 PF01138 3' exoribonuclease family, domain 1 JE55_RS14370 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JE55_RS14370 PF00013 KH domain JE55_RS14370 PF03725 3' exoribonuclease family, domain 2 JE55_RS14375 PF08659 KR domain JE55_RS14375 PF14765 Polyketide synthase dehydratase JE55_RS14375 PF00698 Acyl transferase domain JE55_RS14375 PF08240 Alcohol dehydrogenase GroES-like domain JE55_RS14375 PF00550 Phosphopantetheine attachment site JE55_RS14380 PF00121 Triosephosphate isomerase JE55_RS14385 PF03840 Preprotein translocase SecG subunit JE55_RS14395 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JE55_RS14400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JE55_RS14405 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JE55_RS14410 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JE55_RS14420 PF10531 SLBB domain JE55_RS14420 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JE55_RS14420 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JE55_RS14425 PF00384 Molybdopterin oxidoreductase JE55_RS14425 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JE55_RS14425 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal JE55_RS14430 PF00146 NADH dehydrogenase JE55_RS14435 PF12838 4Fe-4S dicluster domain JE55_RS14440 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JE55_RS14445 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JE55_RS14450 PF00361 Proton-conducting membrane transporter JE55_RS14450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JE55_RS14455 PF00361 Proton-conducting membrane transporter JE55_RS14455 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus JE55_RS14460 PF00361 Proton-conducting membrane transporter JE55_RS14470 PF00293 NUDIX domain JE55_RS14480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS14480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS14480 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS14485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS14485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS14485 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS14490 PF01575 MaoC like domain JE55_RS14490 PF00171 Aldehyde dehydrogenase family JE55_RS14495 PF01575 MaoC like domain JE55_RS14510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS14510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JE55_RS14510 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS14520 PF00300 Histidine phosphatase superfamily (branch 1) JE55_RS14525 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS14535 PF00155 Aminotransferase class I and II JE55_RS14545 PF03883 Peroxide stress protein YaaA JE55_RS14550 PF00246 Zinc carboxypeptidase JE55_RS14550 PF18027 Cytosolic carboxypeptidase N-terminal domain JE55_RS14565 PF00196 Bacterial regulatory proteins, luxR family JE55_RS14565 PF00072 Response regulator receiver domain JE55_RS14600 PF00557 Metallopeptidase family M24 JE55_RS14600 PF01321 Creatinase/Prolidase N-terminal domain JE55_RS14610 PF02311 AraC-like ligand binding domain JE55_RS14610 PF12833 Helix-turn-helix domain JE55_RS14615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JE55_RS14615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JE55_RS14615 PF01842 ACT domain JE55_RS14625 PF09084 NMT1/THI5 like JE55_RS14630 PF17200 Single Cache domain 2 JE55_RS14630 PF07730 Histidine kinase JE55_RS14645 PF00034 Cytochrome c JE55_RS14650 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JE55_RS14650 PF00034 Cytochrome c JE55_RS14650 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JE55_RS14665 PF00115 Cytochrome C and Quinol oxidase polypeptide I JE55_RS14670 PF00034 Cytochrome c JE55_RS14680 PF00563 EAL domain JE55_RS14680 PF03707 Bacterial signalling protein N terminal repeat JE55_RS14680 PF00990 Diguanylate cyclase, GGDEF domain JE55_RS14685 PF00578 AhpC/TSA family JE55_RS14700 PF00873 AcrB/AcrD/AcrF family JE55_RS14705 PF00873 AcrB/AcrD/AcrF family JE55_RS14710 PF13533 Biotin-lipoyl like JE55_RS14730 PF02082 Transcriptional regulator JE55_RS14735 PF01370 NAD dependent epimerase/dehydratase family JE55_RS14735 PF00391 PEP-utilising enzyme, mobile domain JE55_RS14745 PF01037 Lrp/AsnC ligand binding domain JE55_RS14745 PF13404 AsnC-type helix-turn-helix domain JE55_RS14750 PF08402 TOBE domain JE55_RS14750 PF00005 ABC transporter JE55_RS14755 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS14760 PF13416 Bacterial extracellular solute-binding protein JE55_RS14770 PF00324 Amino acid permease JE55_RS14775 PF12805 FUSC-like inner membrane protein yccS JE55_RS14785 PF17946 RecC C-terminal domain JE55_RS14790 PF00580 UvrD/REP helicase N-terminal domain JE55_RS14790 PF12705 PD-(D/E)XK nuclease superfamily JE55_RS14790 PF13361 UvrD-like helicase C-terminal domain JE55_RS14795 PF13538 UvrD-like helicase C-terminal domain JE55_RS14800 PF00472 RF-1 domain JE55_RS14805 PF12792 CSS motif domain associated with EAL JE55_RS14805 PF00563 EAL domain JE55_RS14830 PF01964 Radical SAM ThiC family JE55_RS14830 PF13667 ThiC-associated domain JE55_RS14850 PF01292 Prokaryotic cytochrome b561 JE55_RS14855 PF00174 Oxidoreductase molybdopterin binding domain JE55_RS14865 PF00892 EamA-like transporter family JE55_RS14870 PF07690 Major Facilitator Superfamily JE55_RS14890 PF00149 Calcineurin-like phosphoesterase JE55_RS14895 PF08402 TOBE domain JE55_RS14895 PF00005 ABC transporter JE55_RS14900 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS14915 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS14925 PF00356 Bacterial regulatory proteins, lacI family JE55_RS14945 PF00990 Diguanylate cyclase, GGDEF domain JE55_RS14945 PF00072 Response regulator receiver domain JE55_RS14965 PF00392 Bacterial regulatory proteins, gntR family JE55_RS14965 PF07702 UTRA domain JE55_RS14970 PF01037 Lrp/AsnC ligand binding domain JE55_RS14975 PF01380 SIS domain JE55_RS14980 PF03055 Retinal pigment epithelial membrane protein JE55_RS14990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS14990 PF03466 LysR substrate binding domain JE55_RS15020 PF00155 Aminotransferase class I and II JE55_RS15020 PF00392 Bacterial regulatory proteins, gntR family JE55_RS15035 PF00011 Hsp20/alpha crystallin family JE55_RS15055 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JE55_RS15055 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JE55_RS15060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JE55_RS15060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JE55_RS15065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS15065 PF03466 LysR substrate binding domain JE55_RS15085 PF16957 Malonate decarboxylase, alpha subunit, transporter JE55_RS15090 PF06857 Malonate decarboxylase delta subunit (MdcD) JE55_RS15095 PF01039 Carboxyl transferase domain JE55_RS15105 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG JE55_RS15110 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase JE55_RS15115 PF00698 Acyl transferase domain JE55_RS15120 PF13091 PLD-like domain JE55_RS15145 PF00083 Sugar (and other) transporter JE55_RS15145 PF08946 Osmosensory transporter coiled coil JE55_RS15150 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JE55_RS15155 PF00929 Exonuclease JE55_RS15160 PF00075 RNase H JE55_RS15165 PF08241 Methyltransferase domain JE55_RS15170 PF16123 Hydroxyacylglutathione hydrolase C-terminus JE55_RS15170 PF00753 Metallo-beta-lactamase superfamily JE55_RS15175 PF01464 Transglycosylase SLT domain JE55_RS15175 PF01476 LysM domain JE55_RS15190 PF12833 Helix-turn-helix domain JE55_RS15190 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JE55_RS15195 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JE55_RS15195 PF00117 Glutamine amidotransferase class-I JE55_RS15200 PF01810 LysE type translocator JE55_RS15205 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JE55_RS15205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JE55_RS15205 PF02142 MGS-like domain JE55_RS15210 PF01272 Transcription elongation factor, GreA/GreB, C-term JE55_RS15210 PF03449 Transcription elongation factor, N-terminal JE55_RS15220 PF01985 CRS1 / YhbY (CRM) domain JE55_RS15225 PF01728 FtsJ-like methyltransferase JE55_RS15230 PF01434 Peptidase family M41 JE55_RS15230 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS15230 PF06480 FtsH Extracellular JE55_RS15230 PF17862 AAA+ lid domain JE55_RS15235 PF00809 Pterin binding enzyme JE55_RS15240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JE55_RS15240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JE55_RS15240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JE55_RS15240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JE55_RS15245 PF12849 PBP superfamily domain JE55_RS15250 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS15255 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS15260 PF00005 ABC transporter JE55_RS15265 PF01895 PhoU domain JE55_RS15270 PF00486 Transcriptional regulatory protein, C terminal JE55_RS15270 PF00072 Response regulator receiver domain JE55_RS15275 PF11808 Phosphate regulon sensor protein PhoR JE55_RS15275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS15275 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS15275 PF00989 PAS fold JE55_RS15280 PF13089 Polyphosphate kinase N-terminal domain JE55_RS15280 PF17941 Polyphosphate kinase C-terminal domain 1 JE55_RS15280 PF02503 Polyphosphate kinase middle domain JE55_RS15280 PF13090 Polyphosphate kinase C-terminal domain 2 JE55_RS15285 PF02541 Ppx/GppA phosphatase family JE55_RS15350 PF01554 MatE JE55_RS15360 PF13193 AMP-binding enzyme C-terminal domain JE55_RS15360 PF00501 AMP-binding enzyme JE55_RS15365 PF01551 Peptidase family M23 JE55_RS15365 PF01476 LysM domain JE55_RS15380 PF02673 Bacitracin resistance protein BacA JE55_RS15390 PF00589 Phage integrase family JE55_RS15420 PF04072 Leucine carboxyl methyltransferase JE55_RS15425 PF00155 Aminotransferase class I and II JE55_RS15425 PF00392 Bacterial regulatory proteins, gntR family JE55_RS15440 PF00128 Alpha amylase, catalytic domain JE55_RS15445 PF02446 4-alpha-glucanotransferase JE55_RS15450 PF11941 Domain of unknown function (DUF3459) JE55_RS15450 PF00128 Alpha amylase, catalytic domain JE55_RS15455 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JE55_RS15455 PF00128 Alpha amylase, catalytic domain JE55_RS15460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JE55_RS15460 PF02806 Alpha amylase, C-terminal all-beta domain JE55_RS15465 PF16657 Maltogenic Amylase, C-terminal domain JE55_RS15465 PF00128 Alpha amylase, catalytic domain JE55_RS15470 PF00128 Alpha amylase, catalytic domain JE55_RS15470 PF11896 Domain of unknown function (DUF3416) JE55_RS15480 PF10503 Esterase PHB depolymerase JE55_RS15505 PF03466 LysR substrate binding domain JE55_RS15505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS15510 PF00072 Response regulator receiver domain JE55_RS15510 PF00486 Transcriptional regulatory protein, C terminal JE55_RS15520 PF05666 Fels-1 Prophage Protein-like JE55_RS15535 PF00486 Transcriptional regulatory protein, C terminal JE55_RS15535 PF00072 Response regulator receiver domain JE55_RS15545 PF05658 Head domain of trimeric autotransporter adhesin JE55_RS15545 PF05662 Coiled stalk of trimeric autotransporter adhesin JE55_RS15545 PF03895 YadA-like membrane anchor domain JE55_RS15550 PF00691 OmpA family JE55_RS15550 PF01389 OmpA-like transmembrane domain JE55_RS15615 PF04717 Type VI secretion system, phage-baseplate injector JE55_RS15640 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JE55_RS15640 PF04717 Type VI secretion system, phage-baseplate injector JE55_RS15640 PF13296 Putative type VI secretion system Rhs element Vgr JE55_RS15670 PF04717 Type VI secretion system, phage-baseplate injector JE55_RS15715 PF04909 Amidohydrolase JE55_RS15720 PF07690 Major Facilitator Superfamily JE55_RS15725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS15725 PF03466 LysR substrate binding domain JE55_RS15760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS15760 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS15760 PF00072 Response regulator receiver domain JE55_RS15760 PF00672 HAMP domain JE55_RS15760 PF01627 Hpt domain JE55_RS15760 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JE55_RS15765 PF00072 Response regulator receiver domain JE55_RS15765 PF00196 Bacterial regulatory proteins, luxR family JE55_RS15770 PF02321 Outer membrane efflux protein JE55_RS15775 PF07690 Major Facilitator Superfamily JE55_RS15780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JE55_RS15780 PF00529 HlyD membrane-fusion protein of T1SS JE55_RS15790 PF12241 Trans-2-enoyl-CoA reductase catalytic region JE55_RS15790 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JE55_RS15790 PF07055 Enoyl reductase FAD binding domain JE55_RS15795 PF05506 Domain of unknown function (DUF756) JE55_RS15795 PF04185 Phosphoesterase family JE55_RS15800 PF03150 Di-haem cytochrome c peroxidase JE55_RS15800 PF00034 Cytochrome c JE55_RS15810 PF00933 Glycosyl hydrolase family 3 N terminal domain JE55_RS15820 PF00293 NUDIX domain JE55_RS15825 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JE55_RS15825 PF00749 tRNA synthetases class I (E and Q), catalytic domain JE55_RS15835 PF02515 CoA-transferase family III JE55_RS15840 PF02272 DHHA1 domain JE55_RS15840 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JE55_RS15840 PF01411 tRNA synthetases class II (A) JE55_RS15845 PF03466 LysR substrate binding domain JE55_RS15845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS15850 PF06779 Uncharacterised MFS-type transporter YbfB JE55_RS15855 PF13180 PDZ domain JE55_RS15865 PF00293 NUDIX domain JE55_RS15865 PF09297 NADH pyrophosphatase zinc ribbon domain JE55_RS15870 PF01906 Putative heavy-metal-binding JE55_RS15875 PF00465 Iron-containing alcohol dehydrogenase JE55_RS15880 PF03061 Thioesterase superfamily JE55_RS15885 PF02653 Branched-chain amino acid transport system / permease component JE55_RS15890 PF00005 ABC transporter JE55_RS15890 PF12399 Branched-chain amino acid ATP-binding cassette transporter JE55_RS15895 PF00005 ABC transporter JE55_RS15900 PF04962 KduI/IolB family JE55_RS15905 PF01261 Xylose isomerase-like TIM barrel JE55_RS15910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JE55_RS15910 PF00205 Thiamine pyrophosphate enzyme, central domain JE55_RS15910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JE55_RS15915 PF00294 pfkB family carbohydrate kinase JE55_RS15920 PF00005 ABC transporter JE55_RS15925 PF02653 Branched-chain amino acid transport system / permease component JE55_RS15935 PF01418 Helix-turn-helix domain, rpiR family JE55_RS15935 PF01380 SIS domain JE55_RS15940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JE55_RS15940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JE55_RS15945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JE55_RS15945 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JE55_RS15950 PF01206 Sulfurtransferase TusA JE55_RS15960 PF00486 Transcriptional regulatory protein, C terminal JE55_RS15960 PF00072 Response regulator receiver domain JE55_RS15970 PF13426 PAS domain JE55_RS15970 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS15970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS15970 PF00672 HAMP domain JE55_RS15970 PF14827 Double sensory domain of two-component sensor kinase JE55_RS15980 PF00483 Nucleotidyl transferase JE55_RS15985 PF00133 tRNA synthetases class I (I, L, M and V) JE55_RS15985 PF10458 Valyl tRNA synthetase tRNA binding arm JE55_RS15985 PF08264 Anticodon-binding domain of tRNA JE55_RS15990 PF13361 UvrD-like helicase C-terminal domain JE55_RS15990 PF00580 UvrD/REP helicase N-terminal domain JE55_RS15995 PF01048 Phosphorylase superfamily JE55_RS16000 PF07690 Major Facilitator Superfamily JE55_RS16005 PF02203 Tar ligand binding domain homologue JE55_RS16005 PF00672 HAMP domain JE55_RS16005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS16015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JE55_RS16025 PF04632 Fusaric acid resistance protein family JE55_RS16030 PF02321 Outer membrane efflux protein JE55_RS16035 PF03466 LysR substrate binding domain JE55_RS16035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS16050 PF02913 FAD linked oxidases, C-terminal domain JE55_RS16050 PF01565 FAD binding domain JE55_RS16060 PF03358 NADPH-dependent FMN reductase JE55_RS16065 PF03631 Virulence factor BrkB JE55_RS16080 PF07690 Major Facilitator Superfamily JE55_RS16090 PF01264 Chorismate synthase JE55_RS16130 PF01144 Coenzyme A transferase JE55_RS16135 PF01144 Coenzyme A transferase JE55_RS16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS16155 PF03466 LysR substrate binding domain JE55_RS16165 PF12146 Serine aminopeptidase, S33 JE55_RS16170 PF01042 Endoribonuclease L-PSP JE55_RS16175 PF04607 Region found in RelA / SpoT proteins JE55_RS16175 PF02824 TGS domain JE55_RS16175 PF13291 ACT domain JE55_RS16185 PF03129 Anticodon binding domain JE55_RS16185 PF02824 TGS domain JE55_RS16185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JE55_RS16185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JE55_RS16190 PF00707 Translation initiation factor IF-3, C-terminal domain JE55_RS16190 PF05198 Translation initiation factor IF-3, N-terminal domain JE55_RS16195 PF01632 Ribosomal protein L35 JE55_RS16200 PF00453 Ribosomal protein L20 JE55_RS16205 PF01409 tRNA synthetases class II core domain (F) JE55_RS16205 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JE55_RS16210 PF03147 Ferredoxin-fold anticodon binding domain JE55_RS16210 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JE55_RS16210 PF03484 tRNA synthetase B5 domain JE55_RS16210 PF01588 Putative tRNA binding domain JE55_RS16210 PF03483 B3/4 domain JE55_RS16215 PF00216 Bacterial DNA-binding protein JE55_RS16230 PF01757 Acyltransferase family JE55_RS16250 PF06804 NlpB/DapX lipoprotein JE55_RS16290 PF03466 LysR substrate binding domain JE55_RS16290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS16295 PF04079 Segregation and condensation complex subunit ScpB JE55_RS16300 PF01479 S4 domain JE55_RS16300 PF00849 RNA pseudouridylate synthase JE55_RS16305 PF02576 RimP N-terminal domain JE55_RS16305 PF17384 RimP C-terminal SH3 domain JE55_RS16310 PF13184 NusA-like KH domain JE55_RS16310 PF08529 NusA N-terminal domain JE55_RS16315 PF00009 Elongation factor Tu GTP binding domain JE55_RS16315 PF04760 Translation initiation factor IF-2, N-terminal region JE55_RS16315 PF11987 Translation-initiation factor 2 JE55_RS16315 PF08364 Bacterial translation initiation factor IF-2 associated region JE55_RS16320 PF02033 Ribosome-binding factor A JE55_RS16325 PF16198 tRNA pseudouridylate synthase B C-terminal domain JE55_RS16325 PF09157 Pseudouridine synthase II TruB, C-terminal JE55_RS16325 PF01509 TruB family pseudouridylate synthase (N terminal domain) JE55_RS16330 PF07690 Major Facilitator Superfamily JE55_RS16335 PF00529 HlyD membrane-fusion protein of T1SS JE55_RS16335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JE55_RS16340 PF02321 Outer membrane efflux protein JE55_RS16345 PF01047 MarR family JE55_RS16350 PF00679 Elongation factor G C-terminus JE55_RS16350 PF00009 Elongation factor Tu GTP binding domain JE55_RS16350 PF03144 Elongation factor Tu domain 2 JE55_RS16365 PF16078 2-oxoglutarate dehydrogenase N-terminus JE55_RS16365 PF00676 Dehydrogenase E1 component JE55_RS16365 PF16870 2-oxoglutarate dehydrogenase C-terminal JE55_RS16365 PF02779 Transketolase, pyrimidine binding domain JE55_RS16370 PF00364 Biotin-requiring enzyme JE55_RS16370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JE55_RS16370 PF02817 e3 binding domain JE55_RS16375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JE55_RS16375 PF07992 Pyridine nucleotide-disulphide oxidoreductase JE55_RS16380 PF03969 AFG1-like ATPase JE55_RS16435 PF04972 BON domain JE55_RS16435 PF00263 Bacterial type II and III secretion system protein JE55_RS16435 PF13629 Pilus formation protein N terminal region JE55_RS16445 PF00437 Type II/IV secretion system protein JE55_RS16475 PF00158 Sigma-54 interaction domain JE55_RS16475 PF00072 Response regulator receiver domain JE55_RS16475 PF02954 Bacterial regulatory protein, Fis family JE55_RS16485 PF17209 Hfq protein JE55_RS16500 PF13193 AMP-binding enzyme C-terminal domain JE55_RS16500 PF00501 AMP-binding enzyme JE55_RS16505 PF00440 Bacterial regulatory proteins, tetR family JE55_RS16510 PF07690 Major Facilitator Superfamily JE55_RS16515 PF03352 Methyladenine glycosylase JE55_RS16515 PF00958 GMP synthase C terminal domain JE55_RS16515 PF13673 Acetyltransferase (GNAT) domain JE55_RS16515 PF13302 Acetyltransferase (GNAT) domain JE55_RS16515 PF00117 Glutamine amidotransferase class-I JE55_RS16525 PF01740 STAS domain JE55_RS16525 PF00916 Sulfate permease family JE55_RS16535 PF04185 Phosphoesterase family JE55_RS16540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS16540 PF00672 HAMP domain JE55_RS16540 PF02203 Tar ligand binding domain homologue JE55_RS16555 PF00773 RNB domain JE55_RS16555 PF00575 S1 RNA binding domain JE55_RS16555 PF08461 Ribonuclease R winged-helix domain JE55_RS16555 PF08206 Ribonuclease B OB domain JE55_RS16555 PF17876 Cold shock domain JE55_RS16560 PF08032 RNA 2'-O ribose methyltransferase substrate binding JE55_RS16560 PF00588 SpoU rRNA Methylase family JE55_RS16570 PF01510 N-acetylmuramoyl-L-alanine amidase JE55_RS16575 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JE55_RS16580 PF00392 Bacterial regulatory proteins, gntR family JE55_RS16580 PF07729 FCD domain JE55_RS16585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JE55_RS16585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JE55_RS16590 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS16595 PF00497 Bacterial extracellular solute-binding proteins, family 3 JE55_RS16600 PF01180 Dihydroorotate dehydrogenase JE55_RS16605 PF04377 Arginine-tRNA-protein transferase, C terminus JE55_RS16605 PF04376 Arginine-tRNA-protein transferase, N terminus JE55_RS16610 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JE55_RS16615 PF09297 NADH pyrophosphatase zinc ribbon domain JE55_RS16615 PF00293 NUDIX domain JE55_RS16625 PF03928 Haem-degrading JE55_RS16630 PF00893 Small Multidrug Resistance protein JE55_RS16635 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS16645 PF00296 Luciferase-like monooxygenase JE55_RS16650 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS16655 PF00005 ABC transporter JE55_RS16660 PF03459 TOBE domain JE55_RS16685 PF01207 Dihydrouridine synthase (Dus) JE55_RS16690 PF00375 Sodium:dicarboxylate symporter family JE55_RS16700 PF01638 HxlR-like helix-turn-helix JE55_RS16710 PF00248 Aldo/keto reductase family JE55_RS16715 PF03773 Predicted permease JE55_RS16725 PF01061 ABC-2 type transporter JE55_RS16730 PF00005 ABC transporter JE55_RS16750 PF00717 Peptidase S24-like JE55_RS16750 PF01726 LexA DNA binding domain JE55_RS16760 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS16765 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS16770 PF00005 ABC transporter JE55_RS16770 PF12857 TOBE-like domain JE55_RS16775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS16775 PF03466 LysR substrate binding domain JE55_RS16780 PF13407 Periplasmic binding protein domain JE55_RS16785 PF00005 ABC transporter JE55_RS16790 PF02653 Branched-chain amino acid transport system / permease component JE55_RS16795 PF00356 Bacterial regulatory proteins, lacI family JE55_RS16800 PF00294 pfkB family carbohydrate kinase JE55_RS16805 PF00672 HAMP domain JE55_RS16805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS16805 PF02203 Tar ligand binding domain homologue JE55_RS16810 PF06798 PrkA serine protein kinase C-terminal domain JE55_RS16810 PF08298 PrkA AAA domain JE55_RS16815 PF04285 Protein of unknown function (DUF444) JE55_RS16820 PF04293 SpoVR like protein JE55_RS16825 PF00083 Sugar (and other) transporter JE55_RS16840 PF00005 ABC transporter JE55_RS16845 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS16865 PF04972 BON domain JE55_RS16865 PF00263 Bacterial type II and III secretion system protein JE55_RS16865 PF13629 Pilus formation protein N terminal region JE55_RS16910 PF00497 Bacterial extracellular solute-binding proteins, family 3 JE55_RS16920 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS16925 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS16930 PF01551 Peptidase family M23 JE55_RS16930 PF01476 LysM domain JE55_RS16930 PF08525 Opacity-associated protein A N-terminal motif JE55_RS16935 PF00440 Bacterial regulatory proteins, tetR family JE55_RS16935 PF08361 MAATS-type transcriptional repressor, C-terminal region JE55_RS16940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JE55_RS16940 PF00529 HlyD membrane-fusion protein of T1SS JE55_RS16945 PF00873 AcrB/AcrD/AcrF family JE55_RS16960 PF00419 Fimbrial protein JE55_RS16965 PF13953 PapC C-terminal domain JE55_RS16965 PF13954 PapC N-terminal domain JE55_RS16965 PF00577 Outer membrane usher protein JE55_RS16970 PF02753 Pili assembly chaperone PapD, C-terminal domain JE55_RS16970 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain JE55_RS16980 PF00664 ABC transporter transmembrane region JE55_RS16980 PF04954 Siderophore-interacting protein JE55_RS16980 PF08021 Siderophore-interacting FAD-binding domain JE55_RS16980 PF00005 ABC transporter JE55_RS17000 PF13407 Periplasmic binding protein domain JE55_RS17005 PF00005 ABC transporter JE55_RS17010 PF02653 Branched-chain amino acid transport system / permease component JE55_RS17015 PF00107 Zinc-binding dehydrogenase JE55_RS17015 PF08240 Alcohol dehydrogenase GroES-like domain JE55_RS17020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JE55_RS17020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JE55_RS17040 PF03621 MbtH-like protein JE55_RS17045 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JE55_RS17050 PF00005 ABC transporter JE55_RS17055 PF01032 FecCD transport family JE55_RS17065 PF01497 Periplasmic binding protein JE55_RS17080 PF00005 ABC transporter JE55_RS17080 PF00664 ABC transporter transmembrane region JE55_RS17085 PF00668 Condensation domain JE55_RS17085 PF13193 AMP-binding enzyme C-terminal domain JE55_RS17085 PF00501 AMP-binding enzyme JE55_RS17085 PF00550 Phosphopantetheine attachment site JE55_RS17090 PF00550 Phosphopantetheine attachment site JE55_RS17090 PF13193 AMP-binding enzyme C-terminal domain JE55_RS17090 PF00501 AMP-binding enzyme JE55_RS17090 PF00668 Condensation domain JE55_RS17095 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JE55_RS17100 PF07715 TonB-dependent Receptor Plug Domain JE55_RS17100 PF00593 TonB dependent receptor JE55_RS17105 PF00551 Formyl transferase JE55_RS17115 PF07685 CobB/CobQ-like glutamine amidotransferase domain JE55_RS17115 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JE55_RS17120 PF12557 Cob(I)alamin adenosyltransferase N terminal JE55_RS17120 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JE55_RS17125 PF01890 Cobalamin synthesis G C-terminus JE55_RS17135 PF03824 High-affinity nickel-transport protein JE55_RS17140 PF07683 Cobalamin synthesis protein cobW C-terminal domain JE55_RS17140 PF02492 CobW/HypB/UreG, nucleotide-binding domain JE55_RS17145 PF02514 CobN/Magnesium Chelatase JE55_RS17155 PF13519 von Willebrand factor type A domain JE55_RS17155 PF17863 AAA lid domain JE55_RS17155 PF07728 AAA domain (dynein-related subfamily) JE55_RS17165 PF02230 Phospholipase/Carboxylesterase JE55_RS17175 PF02839 Carbohydrate binding domain JE55_RS17180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JE55_RS17185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JE55_RS17190 PF02570 Precorrin-8X methylmutase JE55_RS17195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JE55_RS17195 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JE55_RS17200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JE55_RS17205 PF01888 CbiD JE55_RS17210 PF02571 Precorrin-6x reductase CbiJ/CobK JE55_RS17220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JE55_RS17225 PF02638 Glycosyl hydrolase-like 10 JE55_RS17230 PF07690 Major Facilitator Superfamily JE55_RS17235 PF01047 MarR family JE55_RS17240 PF13458 Periplasmic binding protein JE55_RS17250 PF00043 Glutathione S-transferase, C-terminal domain JE55_RS17250 PF02798 Glutathione S-transferase, N-terminal domain JE55_RS17255 PF03466 LysR substrate binding domain JE55_RS17255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS17260 PF03928 Haem-degrading JE55_RS17265 PF00561 alpha/beta hydrolase fold JE55_RS17265 PF00106 short chain dehydrogenase JE55_RS17270 PF00696 Amino acid kinase family JE55_RS17275 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JE55_RS17275 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JE55_RS17285 PF13520 Amino acid permease JE55_RS17295 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS17300 PF00005 ABC transporter JE55_RS17305 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS17310 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JE55_RS17315 PF13649 Methyltransferase domain JE55_RS17320 PF07690 Major Facilitator Superfamily JE55_RS17325 PF13193 AMP-binding enzyme C-terminal domain JE55_RS17325 PF00501 AMP-binding enzyme JE55_RS17340 PF02203 Tar ligand binding domain homologue JE55_RS17340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS17340 PF00672 HAMP domain JE55_RS17345 PF01584 CheW-like domain JE55_RS17350 PF00892 EamA-like transporter family JE55_RS17355 PF12833 Helix-turn-helix domain JE55_RS17355 PF12852 Cupin JE55_RS17360 PF13609 Gram-negative porin JE55_RS17375 PF03621 MbtH-like protein JE55_RS17385 PF00155 Aminotransferase class I and II JE55_RS17395 PF00551 Formyl transferase JE55_RS17395 PF18216 N-formyltransferase dimerization C-terminal domain JE55_RS17400 PF00764 Arginosuccinate synthase JE55_RS17405 PF14698 Argininosuccinate lyase C-terminal JE55_RS17405 PF00206 Lyase JE55_RS17425 PF00291 Pyridoxal-phosphate dependent enzyme JE55_RS17430 PF02655 ATP-grasp domain JE55_RS17430 PF00206 Lyase JE55_RS17435 PF01212 Beta-eliminating lyase JE55_RS17445 PF00668 Condensation domain JE55_RS17445 PF00975 Thioesterase domain JE55_RS17445 PF00550 Phosphopantetheine attachment site JE55_RS17445 PF00501 AMP-binding enzyme JE55_RS17445 PF13193 AMP-binding enzyme C-terminal domain JE55_RS17450 PF16861 Carbamoyltransferase C-terminus JE55_RS17450 PF02543 Carbamoyltransferase N-terminus JE55_RS17455 PF01804 Penicillin amidase JE55_RS17475 PF05114 Protein of unknown function (DUF692) JE55_RS17495 PF06532 Negative regulator of sigma F JE55_RS17500 PF08281 Sigma-70, region 4 JE55_RS17500 PF04542 Sigma-70 region 2 JE55_RS17505 PF00872 Transposase, Mutator family JE55_RS17515 PF05717 IS66 Orf2 like protein JE55_RS17520 PF13276 HTH-like domain JE55_RS17520 PF13683 Integrase core domain JE55_RS17525 PF01527 Transposase JE55_RS17530 PF02371 Transposase IS116/IS110/IS902 family JE55_RS17530 PF01548 Transposase JE55_RS17550 PF13340 Putative transposase of IS4/5 family (DUF4096) JE55_RS17555 PF00072 Response regulator receiver domain JE55_RS17555 PF00486 Transcriptional regulatory protein, C terminal JE55_RS17580 PF00529 HlyD membrane-fusion protein of T1SS JE55_RS17580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JE55_RS17585 PF03412 Peptidase C39 family JE55_RS17585 PF00005 ABC transporter JE55_RS17585 PF00664 ABC transporter transmembrane region JE55_RS17610 PF00691 OmpA family JE55_RS17610 PF01389 OmpA-like transmembrane domain JE55_RS17615 PF00816 H-NS histone family JE55_RS17625 PF13609 Gram-negative porin JE55_RS17630 PF00171 Aldehyde dehydrogenase family JE55_RS17640 PF00005 ABC transporter JE55_RS17640 PF08402 TOBE domain JE55_RS17650 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS17665 PF00171 Aldehyde dehydrogenase family JE55_RS17670 PF00296 Luciferase-like monooxygenase JE55_RS17675 PF01613 Flavin reductase like domain JE55_RS17680 PF00561 alpha/beta hydrolase fold JE55_RS17700 PF00392 Bacterial regulatory proteins, gntR family JE55_RS17700 PF07729 FCD domain JE55_RS17715 PF00872 Transposase, Mutator family JE55_RS17740 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS17740 PF00072 Response regulator receiver domain JE55_RS17740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS17740 PF09456 RcsC Alpha-Beta-Loop (ABL) JE55_RS17745 PF00072 Response regulator receiver domain JE55_RS17745 PF00196 Bacterial regulatory proteins, luxR family JE55_RS17760 PF05658 Head domain of trimeric autotransporter adhesin JE55_RS17760 PF03895 YadA-like membrane anchor domain JE55_RS17760 PF05662 Coiled stalk of trimeric autotransporter adhesin JE55_RS17760 PF13018 Extended Signal Peptide of Type V secretion system JE55_RS17790 PF00577 Outer membrane usher protein JE55_RS17790 PF13954 PapC N-terminal domain JE55_RS17790 PF13953 PapC C-terminal domain JE55_RS17795 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain JE55_RS17795 PF02753 Pili assembly chaperone PapD, C-terminal domain JE55_RS17850 PF04820 Tryptophan halogenase JE55_RS17855 PF00999 Sodium/hydrogen exchanger family JE55_RS17860 PF00355 Rieske [2Fe-2S] domain JE55_RS17865 PF00355 Rieske [2Fe-2S] domain JE55_RS17875 PF02733 Dak1 domain JE55_RS17875 PF02734 DAK2 domain JE55_RS17885 PF02203 Tar ligand binding domain homologue JE55_RS17885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JE55_RS17885 PF00672 HAMP domain JE55_RS17895 PF00005 ABC transporter JE55_RS17900 PF02424 ApbE family JE55_RS17910 PF18793 Nitrous oxide reductase propeller repeat 2 JE55_RS17910 PF18764 Nitrous oxide reductase propeller repeat JE55_RS17910 PF13473 Cupredoxin-like domain JE55_RS17915 PF05048 Periplasmic copper-binding protein (NosD) JE55_RS17920 PF00005 ABC transporter JE55_RS17925 PF12679 ABC-2 family transporter protein JE55_RS17950 PF12801 4Fe-4S binding domain JE55_RS17950 PF04205 FMN-binding domain JE55_RS17955 PF12794 Mechanosensitive ion channel inner membrane domain 1 JE55_RS17955 PF00924 Mechanosensitive ion channel JE55_RS17955 PF12795 Mechanosensitive ion channel porin domain JE55_RS17985 PF01544 CorA-like Mg2+ transporter protein JE55_RS18065 PF00356 Bacterial regulatory proteins, lacI family JE55_RS18070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JE55_RS18070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JE55_RS18075 PF07690 Major Facilitator Superfamily JE55_RS18080 PF00294 pfkB family carbohydrate kinase JE55_RS18095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS18095 PF03466 LysR substrate binding domain JE55_RS18100 PF03601 Conserved hypothetical protein 698 JE55_RS18105 PF00654 Voltage gated chloride channel JE55_RS18110 PF08361 MAATS-type transcriptional repressor, C-terminal region JE55_RS18110 PF00440 Bacterial regulatory proteins, tetR family JE55_RS18115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JE55_RS18120 PF00873 AcrB/AcrD/AcrF family JE55_RS18125 PF02321 Outer membrane efflux protein JE55_RS18145 PF13443 Cro/C1-type HTH DNA-binding domain JE55_RS18155 PF02954 Bacterial regulatory protein, Fis family JE55_RS18155 PF00072 Response regulator receiver domain JE55_RS18155 PF00158 Sigma-54 interaction domain JE55_RS18160 PF00753 Metallo-beta-lactamase superfamily JE55_RS18170 PF01925 Sulfite exporter TauE/SafE JE55_RS18175 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS18180 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS18185 PF08402 TOBE domain JE55_RS18185 PF00005 ABC transporter JE55_RS18190 PF13416 Bacterial extracellular solute-binding protein JE55_RS18195 PF01566 Natural resistance-associated macrophage protein JE55_RS18205 PF03922 OmpW family JE55_RS18210 PF03060 Nitronate monooxygenase JE55_RS18215 PF00171 Aldehyde dehydrogenase family JE55_RS18225 PF00005 ABC transporter JE55_RS18225 PF12848 ABC transporter JE55_RS18235 PF05170 AsmA family JE55_RS18240 PF00005 ABC transporter JE55_RS18245 PF03649 Uncharacterised protein family (UPF0014) JE55_RS18370 PF02705 K+ potassium transporter JE55_RS18555 PF10431 C-terminal, D2-small domain, of ClpB protein JE55_RS18555 PF02861 Clp amino terminal domain, pathogenicity island component JE55_RS18555 PF17871 AAA lid domain JE55_RS18555 PF07724 AAA domain (Cdc48 subfamily) JE55_RS18555 PF00004 ATPase family associated with various cellular activities (AAA) JE55_RS18575 PF03454 MoeA C-terminal region (domain IV) JE55_RS18575 PF00994 Probable molybdopterin binding domain JE55_RS18575 PF03453 MoeA N-terminal region (domain I and II) JE55_RS18765 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS18795 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JE55_RS18795 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JE55_RS18795 PF02769 AIR synthase related protein, C-terminal domain JE55_RS18810 PF02769 AIR synthase related protein, C-terminal domain JE55_RS18810 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JE55_RS18810 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JE55_RS19100 PF17092 Penicillin-binding protein OB-like domain JE55_RS19100 PF00905 Penicillin binding protein transpeptidase domain JE55_RS19100 PF00912 Transglycosylase JE55_RS19185 PF14437 MafB19-like deaminase JE55_RS19265 PF00391 PEP-utilising enzyme, mobile domain JE55_RS19265 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JE55_RS19265 PF02896 PEP-utilising enzyme, TIM barrel domain JE55_RS19330 PF01103 Surface antigen JE55_RS19330 PF07244 Surface antigen variable number repeat JE55_RS19395 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JE55_RS19395 PF03120 NAD-dependent DNA ligase OB-fold domain JE55_RS19395 PF01653 NAD-dependent DNA ligase adenylation domain JE55_RS19395 PF00533 BRCA1 C Terminus (BRCT) domain JE55_RS19395 PF12826 Helix-hairpin-helix motif JE55_RS19485 PF07690 Major Facilitator Superfamily JE55_RS19525 PF00463 Isocitrate lyase family JE55_RS19700 PF00266 Aminotransferase class-V JE55_RS19760 PF00501 AMP-binding enzyme JE55_RS19760 PF08659 KR domain JE55_RS19760 PF14765 Polyketide synthase dehydratase JE55_RS19760 PF00550 Phosphopantetheine attachment site JE55_RS19760 PF16197 Ketoacyl-synthetase C-terminal extension JE55_RS19760 PF00109 Beta-ketoacyl synthase, N-terminal domain JE55_RS19760 PF02801 Beta-ketoacyl synthase, C-terminal domain JE55_RS19760 PF13193 AMP-binding enzyme C-terminal domain JE55_RS19760 PF00668 Condensation domain JE55_RS19800 PF00668 Condensation domain JE55_RS19800 PF13193 AMP-binding enzyme C-terminal domain JE55_RS19800 PF00550 Phosphopantetheine attachment site JE55_RS19800 PF00501 AMP-binding enzyme JE55_RS19825 PF00873 AcrB/AcrD/AcrF family JE55_RS19880 PF09179 TilS substrate binding domain JE55_RS19880 PF11734 TilS substrate C-terminal domain JE55_RS19880 PF01171 PP-loop family JE55_RS20155 PF02811 PHP domain JE55_RS20240 PF17768 RecJ OB domain JE55_RS20240 PF02272 DHHA1 domain JE55_RS20240 PF01368 DHH family JE55_RS20345 PF00989 PAS fold JE55_RS20345 PF00512 His Kinase A (phospho-acceptor) domain JE55_RS20345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JE55_RS20375 PF01432 Peptidase family M3 JE55_RS20395 PF07690 Major Facilitator Superfamily JE55_RS20460 PF00072 Response regulator receiver domain JE55_RS20460 PF00158 Sigma-54 interaction domain JE55_RS20460 PF02954 Bacterial regulatory protein, Fis family JE55_RS20540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JE55_RS20540 PF02770 Acyl-CoA dehydrogenase, middle domain JE55_RS20540 PF18158 Adaptive response protein AidB N-terminal domain JE55_RS20700 PF01136 Peptidase family U32 JE55_RS20840 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS20895 PF01266 FAD dependent oxidoreductase JE55_RS21265 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JE55_RS21265 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JE55_RS21405 PF00206 Lyase JE55_RS21405 PF10415 Fumarase C C-terminus JE55_RS21750 PF01494 FAD binding domain JE55_RS21875 PF01541 GIY-YIG catalytic domain JE55_RS21875 PF12826 Helix-hairpin-helix motif JE55_RS21875 PF02151 UvrB/uvrC motif JE55_RS21875 PF08459 UvrC Helix-hairpin-helix N-terminal JE55_RS21935 PF00083 Sugar (and other) transporter JE55_RS21935 PF07690 Major Facilitator Superfamily JE55_RS22050 PF02685 Glucokinase JE55_RS22050 PF01418 Helix-turn-helix domain, rpiR family JE55_RS22050 PF01380 SIS domain JE55_RS22155 PF02673 Bacitracin resistance protein BacA JE55_RS22220 PF00699 Urease beta subunit JE55_RS22565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS22565 PF03466 LysR substrate binding domain JE55_RS22740 PF00464 Serine hydroxymethyltransferase JE55_RS22845 PF00155 Aminotransferase class I and II JE55_RS22855 PF02801 Beta-ketoacyl synthase, C-terminal domain JE55_RS22855 PF08240 Alcohol dehydrogenase GroES-like domain JE55_RS22855 PF14765 Polyketide synthase dehydratase JE55_RS22855 PF00698 Acyl transferase domain JE55_RS22855 PF00550 Phosphopantetheine attachment site JE55_RS22855 PF08659 KR domain JE55_RS22855 PF00107 Zinc-binding dehydrogenase JE55_RS22855 PF00109 Beta-ketoacyl synthase, N-terminal domain JE55_RS22855 PF16197 Ketoacyl-synthetase C-terminal extension JE55_RS22965 PF00483 Nucleotidyl transferase JE55_RS22965 PF01050 Mannose-6-phosphate isomerase JE55_RS23015 PF00586 AIR synthase related protein, N-terminal domain JE55_RS23015 PF02769 AIR synthase related protein, C-terminal domain JE55_RS23120 PF02463 RecF/RecN/SMC N terminal domain JE55_RS23125 PF02463 RecF/RecN/SMC N terminal domain JE55_RS23175 PF01523 Putative modulator of DNA gyrase JE55_RS23265 PF05861 Bacterial phosphonate metabolism protein (PhnI) JE55_RS23310 PF00271 Helicase conserved C-terminal domain JE55_RS23310 PF00270 DEAD/DEAH box helicase JE55_RS23310 PF17191 RecG wedge domain JE55_RS23375 PF01170 Putative RNA methylase family UPF0020 JE55_RS23375 PF02926 THUMP domain JE55_RS23795 PF00912 Transglycosylase JE55_RS23870 PF03477 ATP cone domain JE55_RS23870 PF00317 Ribonucleotide reductase, all-alpha domain JE55_RS23870 PF02867 Ribonucleotide reductase, barrel domain JE55_RS24135 PF08245 Mur ligase middle domain JE55_RS24135 PF02875 Mur ligase family, glutamate ligase domain JE55_RS24425 PF00664 ABC transporter transmembrane region JE55_RS24425 PF00005 ABC transporter JE55_RS24425 PF03412 Peptidase C39 family JE55_RS24665 PF00033 Cytochrome b/b6/petB JE55_RS24665 PF00032 Cytochrome b(C-terminal)/b6/petD JE55_RS24865 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JE55_RS24865 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JE55_RS24900 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JE55_RS25035 PF04997 RNA polymerase Rpb1, domain 1 JE55_RS25035 PF00623 RNA polymerase Rpb1, domain 2 JE55_RS25035 PF04998 RNA polymerase Rpb1, domain 5 JE55_RS25035 PF04983 RNA polymerase Rpb1, domain 3 JE55_RS25035 PF05000 RNA polymerase Rpb1, domain 4 JE55_RS25050 PF00562 RNA polymerase Rpb2, domain 6 JE55_RS25050 PF04563 RNA polymerase beta subunit JE55_RS25050 PF04561 RNA polymerase Rpb2, domain 2 JE55_RS25050 PF04565 RNA polymerase Rpb2, domain 3 JE55_RS25050 PF10385 RNA polymerase beta subunit external 1 domain JE55_RS25050 PF04560 RNA polymerase Rpb2, domain 7 JE55_RS25055 PF04561 RNA polymerase Rpb2, domain 2 JE55_RS25055 PF04560 RNA polymerase Rpb2, domain 7 JE55_RS25055 PF10385 RNA polymerase beta subunit external 1 domain JE55_RS25055 PF00562 RNA polymerase Rpb2, domain 6 JE55_RS25055 PF04563 RNA polymerase beta subunit JE55_RS25055 PF04565 RNA polymerase Rpb2, domain 3 JE55_RS26355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JE55_RS26355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JE55_RS26355 PF00378 Enoyl-CoA hydratase/isomerase JE55_RS26490 PF13302 Acetyltransferase (GNAT) domain JE55_RS26535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JE55_RS26535 PF03466 LysR substrate binding domain JE55_RS27020 PF00005 ABC transporter JE55_RS27020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JE55_RS27050 PF02626 Carboxyltransferase domain, subdomain A and B JE55_RS27130 PF02119 Flagellar P-ring protein JE55_RS27170 PF00860 Permease family JE55_RS27430 PF00561 alpha/beta hydrolase fold JE55_RS27595 PF00999 Sodium/hydrogen exchanger family JE55_RS27750 PF02310 B12 binding domain JE55_RS27750 PF02965 Vitamin B12 dependent methionine synthase, activation domain JE55_RS27750 PF02574 Homocysteine S-methyltransferase JE55_RS27750 PF02607 B12 binding domain JE55_RS27750 PF00809 Pterin binding enzyme JE55_RS27820 PF02872 5'-nucleotidase, C-terminal domain JE55_RS27820 PF00149 Calcineurin-like phosphoesterase JE55_RS28080 PF02630 SCO1/SenC JE55_RS28130 PF00005 ABC transporter JE55_RS28155 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JE55_RS28155 PF14579 Helix-hairpin-helix motif JE55_RS28155 PF02811 PHP domain JE55_RS28155 PF07733 Bacterial DNA polymerase III alpha NTPase domain JE55_RS28515 PF08447 PAS fold JE55_RS28515 PF08448 PAS fold JE55_RS28515 PF00563 EAL domain JE55_RS28515 PF00990 Diguanylate cyclase, GGDEF domain JE55_RS28515 PF05231 MASE1 JE55_RS28515 PF13426 PAS domain JE55_RS28555 PF01050 Mannose-6-phosphate isomerase JE55_RS28555 PF00483 Nucleotidyl transferase JE55_RS28700 PF01380 SIS domain JE55_RS28700 PF01418 Helix-turn-helix domain, rpiR family JE55_RS28840 PF04453 LPS transport system D JE55_RS28845 PF04453 LPS transport system D JE55_RS29010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JE55_RS29010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JE55_RS29335 PF00162 Phosphoglycerate kinase JE55_RS29355 PF00731 AIR carboxylase JE55_RS29430 PF02321 Outer membrane efflux protein JE55_RS29500 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS29665 PF00106 short chain dehydrogenase JE55_RS29920 PF00005 ABC transporter JE55_RS29920 PF12399 Branched-chain amino acid ATP-binding cassette transporter JE55_RS29925 PF00005 ABC transporter JE55_RS30140 PF10609 NUBPL iron-transfer P-loop NTPase JE55_RS30145 PF02261 Aspartate decarboxylase JE55_RS30160 PF02616 Segregation and condensation protein ScpA JE55_RS30200 PF01588 Putative tRNA binding domain JE55_RS30200 PF09334 tRNA synthetases class I (M) JE55_RS30230 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JE55_RS30230 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JE55_RS30230 PF01276 Orn/Lys/Arg decarboxylase, major domain JE55_RS30445 PF00982 Glycosyltransferase family 20 JE55_RS30635 PF00563 EAL domain JE55_RS30635 PF00990 Diguanylate cyclase, GGDEF domain JE55_RS30635 PF03707 Bacterial signalling protein N terminal repeat JE55_RS30760 PF10282 Lactonase, 7-bladed beta-propeller JE55_RS31205 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JE55_RS31205 PF00205 Thiamine pyrophosphate enzyme, central domain JE55_RS31205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JE55_RS31410 PF18027 Cytosolic carboxypeptidase N-terminal domain JE55_RS31410 PF00246 Zinc carboxypeptidase JE55_RS31420 PF00196 Bacterial regulatory proteins, luxR family JE55_RS31565 PF00873 AcrB/AcrD/AcrF family JE55_RS31570 PF00873 AcrB/AcrD/AcrF family JE55_RS31580 PF00873 AcrB/AcrD/AcrF family JE55_RS31635 PF00528 Binding-protein-dependent transport system inner membrane component JE55_RS31650 PF00324 Amino acid permease JE55_RS31720 PF13538 UvrD-like helicase C-terminal domain JE55_RS31870 PF00083 Sugar (and other) transporter JE55_RS31870 PF08946 Osmosensory transporter coiled coil JE55_RS32150 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JE55_RS32150 PF02806 Alpha amylase, C-terminal all-beta domain JE55_RS32250 PF00795 Carbon-nitrogen hydrolase JE55_RS32250 PF02540 NAD synthase