JE55_RS00010	PWY-6936	seleno-amino acid biosynthesis
JE55_RS00040	PWY-5676	acetyl-CoA fermentation to butanoate II
JE55_RS00040	PWY-5741	ethylmalonyl-CoA pathway
JE55_RS00040	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
JE55_RS00100	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS00165	PWY-2201	folate transformations I
JE55_RS00170	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JE55_RS00170	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
JE55_RS00170	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS00170	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS00170	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
JE55_RS00170	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JE55_RS00170	PWY-7205	CMP phosphorylation
JE55_RS00170	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JE55_RS00170	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS00170	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS00170	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS00170	PWY-7224	purine deoxyribonucleosides salvage
JE55_RS00170	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS00170	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
JE55_RS00215	PWY-5381	pyridine nucleotide cycling (plants)
JE55_RS00215	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
JE55_RS00215	PWY-6596	adenosine nucleotides degradation I
JE55_RS00215	PWY-6606	guanosine nucleotides degradation II
JE55_RS00215	PWY-6607	guanosine nucleotides degradation I
JE55_RS00215	PWY-6608	guanosine nucleotides degradation III
JE55_RS00215	PWY-7185	UTP and CTP dephosphorylation I
JE55_RS00250	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS00320	PWY-6823	molybdenum cofactor biosynthesis
JE55_RS00330	PWY-6823	molybdenum cofactor biosynthesis
JE55_RS00555	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JE55_RS00555	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS00555	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS00555	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
JE55_RS00555	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JE55_RS00555	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JE55_RS00615	PWY-1361	benzoyl-CoA degradation I (aerobic)
JE55_RS00615	PWY-5109	2-methylbutanoate biosynthesis
JE55_RS00615	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
JE55_RS00615	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
JE55_RS00615	PWY-5177	glutaryl-CoA degradation
JE55_RS00615	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JE55_RS00615	PWY-6435	4-hydroxybenzoate biosynthesis V
JE55_RS00615	PWY-6583	pyruvate fermentation to butanol I
JE55_RS00615	PWY-6863	pyruvate fermentation to hexanol
JE55_RS00615	PWY-6883	pyruvate fermentation to butanol II
JE55_RS00615	PWY-6944	androstenedione degradation
JE55_RS00615	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
JE55_RS00615	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
JE55_RS00615	PWY-7007	methyl ketone biosynthesis
JE55_RS00615	PWY-7046	4-coumarate degradation (anaerobic)
JE55_RS00615	PWY-7094	fatty acid salvage
JE55_RS00615	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
JE55_RS00615	PWY-735	jasmonic acid biosynthesis
JE55_RS00615	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
JE55_RS00615	PWY-7606	docosahexaenoate biosynthesis III (mammals)
JE55_RS00615	PWY-7726	JE55_RS00615
JE55_RS00655	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JE55_RS00655	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
JE55_RS00655	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
JE55_RS00670	PWY-6938	NADH repair
JE55_RS00675	PWY-3801	sucrose degradation II (sucrose synthase)
JE55_RS00675	PWY-5054	sorbitol biosynthesis I
JE55_RS00675	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
JE55_RS00675	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
JE55_RS00675	PWY-5659	GDP-mannose biosynthesis
JE55_RS00675	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS00675	PWY-621	sucrose degradation III (sucrose invertase)
JE55_RS00675	PWY-622	starch biosynthesis
JE55_RS00675	PWY-6981	chitin biosynthesis
JE55_RS00675	PWY-6992	1,5-anhydrofructose degradation
JE55_RS00675	PWY-7238	sucrose biosynthesis II
JE55_RS00675	PWY-7347	sucrose biosynthesis III
JE55_RS00675	PWY-7385	1,3-propanediol biosynthesis (engineered)
JE55_RS00760	PWY-6654	phosphopantothenate biosynthesis III
JE55_RS00875	PWY-7560	methylerythritol phosphate pathway II
JE55_RS00880	PWY-7560	methylerythritol phosphate pathway II
JE55_RS00900	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS00965	PWY-5691	urate degradation to allantoin I
JE55_RS00965	PWY-7394	urate degradation to allantoin II
JE55_RS00975	PWY-5694	allantoin degradation to glyoxylate I
JE55_RS00975	PWY-5705	allantoin degradation to glyoxylate III
JE55_RS00980	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
JE55_RS00985	PWY-5691	urate degradation to allantoin I
JE55_RS00985	PWY-7394	urate degradation to allantoin II
JE55_RS00995	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JE55_RS00995	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JE55_RS01035	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS01045	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
JE55_RS01045	PWY-6596	adenosine nucleotides degradation I
JE55_RS01045	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS01095	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS01100	PWY-6745	phytochelatins biosynthesis
JE55_RS01130	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
JE55_RS01130	PWY-622	starch biosynthesis
JE55_RS01140	PWY-5971	palmitate biosynthesis II (bacteria and plants)
JE55_RS01140	PWY-5973	<i>cis</i>-vaccenate biosynthesis
JE55_RS01140	PWY-5989	stearate biosynthesis II (bacteria and plants)
JE55_RS01140	PWY-5994	palmitate biosynthesis I (animals and fungi)
JE55_RS01140	PWY-6113	superpathway of mycolate biosynthesis
JE55_RS01140	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
JE55_RS01140	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JE55_RS01140	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JE55_RS01140	PWY-7663	gondoate biosynthesis (anaerobic)
JE55_RS01140	PWY-7664	oleate biosynthesis IV (anaerobic)
JE55_RS01140	PWYG-321	mycolate biosynthesis
JE55_RS01165	PWY-7294	xylose degradation IV
JE55_RS01165	PWY-7295	L-arabinose degradation IV
JE55_RS01165	PWY-7560	methylerythritol phosphate pathway II
JE55_RS01170	PWY-5667	CDP-diacylglycerol biosynthesis I
JE55_RS01170	PWY-5981	CDP-diacylglycerol biosynthesis III
JE55_RS01305	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JE55_RS01315	PWY-6910	hydroxymethylpyrimidine salvage
JE55_RS01315	PWY-7356	thiamin salvage IV (yeast)
JE55_RS01315	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
JE55_RS01340	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
JE55_RS01340	PWY-5368	dimorphecolate biosynthesis
JE55_RS01340	PWY-5995	linoleate biosynthesis I (plants)
JE55_RS01340	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
JE55_RS01340	PWY-6803	phosphatidylcholine acyl editing
JE55_RS01340	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
JE55_RS01340	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
JE55_RS01340	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
JE55_RS01340	PWY-7470	phosphatidylcholine biosynthesis VII
JE55_RS01340	PWY-7618	ricinoleate biosynthesis
JE55_RS01355	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JE55_RS01370	PWY-7425	2-chloroacrylate degradation I
JE55_RS01375	PWY-6728	methylaspartate cycle
JE55_RS01375	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JE55_RS01375	PWY-7118	chitin degradation to ethanol
JE55_RS01375	PWY-7294	xylose degradation IV
JE55_RS01375	PWY-7295	L-arabinose degradation IV
JE55_RS01430	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JE55_RS01465	PWY-5971	palmitate biosynthesis II (bacteria and plants)
JE55_RS01465	PWY-5973	<i>cis</i>-vaccenate biosynthesis
JE55_RS01465	PWY-5989	stearate biosynthesis II (bacteria and plants)
JE55_RS01465	PWY-6113	superpathway of mycolate biosynthesis
JE55_RS01465	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
JE55_RS01465	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JE55_RS01465	PWY-7663	gondoate biosynthesis (anaerobic)
JE55_RS01465	PWY-7664	oleate biosynthesis IV (anaerobic)
JE55_RS01465	PWYG-321	mycolate biosynthesis
JE55_RS01495	PWY-6823	molybdenum cofactor biosynthesis
JE55_RS01520	PWY-4983	L-citrulline-nitric oxide cycle
JE55_RS01520	PWY-4984	urea cycle
JE55_RS01520	PWY-5	canavanine biosynthesis
JE55_RS01520	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS01520	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS01535	PWY-5278	sulfite oxidation III
JE55_RS01535	PWY-5340	sulfate activation for sulfonation
JE55_RS01535	PWY-6683	sulfate reduction III (assimilatory)
JE55_RS01535	PWY-6932	selenate reduction
JE55_RS01565	PWY-6891	thiazole biosynthesis II (Bacillus)
JE55_RS01565	PWY-6892	thiazole biosynthesis I (E. coli)
JE55_RS01565	PWY-7560	methylerythritol phosphate pathway II
JE55_RS01615	PWY-5340	sulfate activation for sulfonation
JE55_RS01660	PWY-2941	L-lysine biosynthesis II
JE55_RS01660	PWY-2942	L-lysine biosynthesis III
JE55_RS01660	PWY-5097	L-lysine biosynthesis VI
JE55_RS01660	PWY-6559	spermidine biosynthesis II
JE55_RS01660	PWY-6562	norspermidine biosynthesis
JE55_RS01660	PWY-7153	grixazone biosynthesis
JE55_RS01670	PWY-4381	fatty acid biosynthesis initiation I
JE55_RS01670	PWY-5743	3-hydroxypropanoate cycle
JE55_RS01670	PWY-5744	glyoxylate assimilation
JE55_RS01670	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JE55_RS01670	PWY-6679	jadomycin biosynthesis
JE55_RS01670	PWY-6722	candicidin biosynthesis
JE55_RS01670	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JE55_RS01705	PWY-6936	seleno-amino acid biosynthesis
JE55_RS01705	PWY-7274	D-cycloserine biosynthesis
JE55_RS01710	PWY-6004	glycine betaine biosynthesis V (from glycine)
JE55_RS01715	PWY-2301	<i>myo</i>-inositol biosynthesis
JE55_RS01715	PWY-4702	phytate degradation I
JE55_RS01715	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
JE55_RS02015	PWY-2941	L-lysine biosynthesis II
JE55_RS02015	PWY-2942	L-lysine biosynthesis III
JE55_RS02015	PWY-5097	L-lysine biosynthesis VI
JE55_RS02075	PWY-1042	glycolysis IV (plant cytosol)
JE55_RS02075	PWY-1622	formaldehyde assimilation I (serine pathway)
JE55_RS02075	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JE55_RS02075	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS02075	PWY-5723	Rubisco shunt
JE55_RS02075	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS02075	PWY-6886	1-butanol autotrophic biosynthesis
JE55_RS02075	PWY-6901	superpathway of glucose and xylose degradation
JE55_RS02075	PWY-7003	glycerol degradation to butanol
JE55_RS02075	PWY-7124	ethylene biosynthesis V (engineered)
JE55_RS02075	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
JE55_RS02080	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JE55_RS02080	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
JE55_RS02085	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
JE55_RS02085	PWY-7177	UTP and CTP dephosphorylation II
JE55_RS02085	PWY-7185	UTP and CTP dephosphorylation I
JE55_RS02170	PWY-6823	molybdenum cofactor biosynthesis
JE55_RS02170	PWY-6891	thiazole biosynthesis II (Bacillus)
JE55_RS02170	PWY-6892	thiazole biosynthesis I (E. coli)
JE55_RS02170	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
JE55_RS02215	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
JE55_RS02215	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
JE55_RS02225	PWY-6891	thiazole biosynthesis II (Bacillus)
JE55_RS02225	PWY-6892	thiazole biosynthesis I (E. coli)
JE55_RS02225	PWY-7560	methylerythritol phosphate pathway II
JE55_RS02240	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
JE55_RS02240	PWY-2201	folate transformations I
JE55_RS02240	PWY-3841	folate transformations II
JE55_RS02240	PWY-5030	L-histidine degradation III
JE55_RS02240	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS02240	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
JE55_RS02315	PWY-381	nitrate reduction II (assimilatory)
JE55_RS02315	PWY-5675	nitrate reduction V (assimilatory)
JE55_RS02315	PWY-6549	L-glutamine biosynthesis III
JE55_RS02315	PWY-6963	ammonia assimilation cycle I
JE55_RS02315	PWY-6964	ammonia assimilation cycle II
JE55_RS02350	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS02400	PWY-381	nitrate reduction II (assimilatory)
JE55_RS02400	PWY-5675	nitrate reduction V (assimilatory)
JE55_RS02400	PWY-6549	L-glutamine biosynthesis III
JE55_RS02400	PWY-6963	ammonia assimilation cycle I
JE55_RS02400	PWY-6964	ammonia assimilation cycle II
JE55_RS02435	PWY-5028	L-histidine degradation II
JE55_RS02435	PWY-5030	L-histidine degradation III
JE55_RS02445	PWY-5028	L-histidine degradation II
JE55_RS02445	PWY-5030	L-histidine degradation III
JE55_RS02455	PWY-5028	L-histidine degradation II
JE55_RS02455	PWY-5030	L-histidine degradation III
JE55_RS02460	PWY-6012	acyl carrier protein metabolism I
JE55_RS02460	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
JE55_RS02480	PWY-5340	sulfate activation for sulfonation
JE55_RS02495	PWY-3781	aerobic respiration I (cytochrome c)
JE55_RS02495	PWY-4521	arsenite oxidation I (respiratory)
JE55_RS02495	PWY-6692	Fe(II) oxidation
JE55_RS02495	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
JE55_RS02515	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS02515	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS02515	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS02520	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS02520	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS02520	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS02550	PWY-723	alkylnitronates degradation
JE55_RS02635	PWY-3781	aerobic respiration I (cytochrome c)
JE55_RS02635	PWY-4521	arsenite oxidation I (respiratory)
JE55_RS02635	PWY-6692	Fe(II) oxidation
JE55_RS02635	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
JE55_RS02635	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
JE55_RS02735	PWY-5129	sphingolipid biosynthesis (plants)
JE55_RS02750	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
JE55_RS02750	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
JE55_RS03070	PWY-5269	cardiolipin biosynthesis II
JE55_RS03070	PWY-5668	cardiolipin biosynthesis I
JE55_RS03095	PWY-6902	chitin degradation II
JE55_RS03100	PWY-6012	acyl carrier protein metabolism I
JE55_RS03100	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
JE55_RS03175	PWY-5367	petroselinate biosynthesis
JE55_RS03175	PWY-5515	L-arabinose degradation II
JE55_RS03175	PWY-5525	D-glucuronate degradation I
JE55_RS03175	PWY-5971	palmitate biosynthesis II (bacteria and plants)
JE55_RS03175	PWY-5973	<i>cis</i>-vaccenate biosynthesis
JE55_RS03175	PWY-5989	stearate biosynthesis II (bacteria and plants)
JE55_RS03175	PWY-5994	palmitate biosynthesis I (animals and fungi)
JE55_RS03175	PWY-6113	superpathway of mycolate biosynthesis
JE55_RS03175	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
JE55_RS03175	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JE55_RS03175	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JE55_RS03175	PWY-7663	gondoate biosynthesis (anaerobic)
JE55_RS03175	PWY-7664	oleate biosynthesis IV (anaerobic)
JE55_RS03175	PWYG-321	mycolate biosynthesis
JE55_RS03180	PWY-4381	fatty acid biosynthesis initiation I
JE55_RS03180	PWY-6799	fatty acid biosynthesis (plant mitochondria)
JE55_RS03180	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JE55_RS03185	PWY-4381	fatty acid biosynthesis initiation I
JE55_RS03210	PWY-2201	folate transformations I
JE55_RS03240	PWY-6823	molybdenum cofactor biosynthesis
JE55_RS03245	PWY-5964	guanylyl molybdenum cofactor biosynthesis
JE55_RS03245	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
JE55_RS03250	PWY-6823	molybdenum cofactor biosynthesis
JE55_RS03285	PWY-5381	pyridine nucleotide cycling (plants)
JE55_RS03335	PWY-5392	reductive TCA cycle II
JE55_RS03335	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
JE55_RS03335	PWY-5690	TCA cycle II (plants and fungi)
JE55_RS03335	PWY-5913	TCA cycle VI (obligate autotrophs)
JE55_RS03335	PWY-6728	methylaspartate cycle
JE55_RS03335	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JE55_RS03335	PWY-7254	TCA cycle VII (acetate-producers)
JE55_RS03335	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
JE55_RS03360	PWY-3841	folate transformations II
JE55_RS03360	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS03360	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS03360	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JE55_RS03360	PWY-7199	pyrimidine deoxyribonucleosides salvage
JE55_RS03360	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JE55_RS03400	PWY-3841	folate transformations II
JE55_RS03400	PWY-6614	tetrahydrofolate biosynthesis
JE55_RS03465	PWY-6829	tRNA methylation (yeast)
JE55_RS03465	PWY-7285	methylwyosine biosynthesis
JE55_RS03465	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
JE55_RS03550	PWY-6936	seleno-amino acid biosynthesis
JE55_RS03575	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
JE55_RS03600	PWY-7205	CMP phosphorylation
JE55_RS03605	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JE55_RS03610	PWY-3461	L-tyrosine biosynthesis II
JE55_RS03610	PWY-3462	L-phenylalanine biosynthesis II
JE55_RS03610	PWY-6120	L-tyrosine biosynthesis III
JE55_RS03610	PWY-6627	salinosporamide A biosynthesis
JE55_RS03610	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
JE55_RS03610	PWY-7626	bacilysin biosynthesis
JE55_RS03635	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
JE55_RS03635	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
JE55_RS03635	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
JE55_RS03635	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
JE55_RS03635	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
JE55_RS03635	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
JE55_RS03635	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
JE55_RS03635	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
JE55_RS03635	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
JE55_RS03635	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
JE55_RS03640	PWY-181	photorespiration
JE55_RS03670	PWY-1881	formate oxidation to CO<sub>2</sub>
JE55_RS03670	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS03670	PWY-6696	oxalate degradation III
JE55_RS03700	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
JE55_RS03715	PWY-6610	adenine and adenosine salvage IV
JE55_RS03725	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS03725	PWY-6606	guanosine nucleotides degradation II
JE55_RS03725	PWY-6608	guanosine nucleotides degradation III
JE55_RS03725	PWY-7442	drosopterin and aurodrosopterin biosynthesis
JE55_RS03750	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
JE55_RS03750	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
JE55_RS03750	PWY-6936	seleno-amino acid biosynthesis
JE55_RS03750	PWY-702	L-methionine biosynthesis II
JE55_RS03760	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS03820	PWY-3461	L-tyrosine biosynthesis II
JE55_RS03820	PWY-3462	L-phenylalanine biosynthesis II
JE55_RS03820	PWY-6120	L-tyrosine biosynthesis III
JE55_RS03820	PWY-6627	salinosporamide A biosynthesis
JE55_RS03820	PWY-7626	bacilysin biosynthesis
JE55_RS03870	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS03885	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
JE55_RS03985	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
JE55_RS04045	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
JE55_RS04050	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
JE55_RS04050	PWY-6855	chitin degradation I (archaea)
JE55_RS04050	PWY-6906	chitin derivatives degradation
JE55_RS04055	PWY-2722	trehalose degradation IV
JE55_RS04055	PWY-2723	trehalose degradation V
JE55_RS04055	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
JE55_RS04055	PWY-5661	GDP-glucose biosynthesis
JE55_RS04055	PWY-621	sucrose degradation III (sucrose invertase)
JE55_RS04055	PWY-7238	sucrose biosynthesis II
JE55_RS04055	PWY-7385	1,3-propanediol biosynthesis (engineered)
JE55_RS04100	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JE55_RS04105	PWY-5525	D-glucuronate degradation I
JE55_RS04110	PWY-6167	flavin biosynthesis II (archaea)
JE55_RS04110	PWY-6168	flavin biosynthesis III (fungi)
JE55_RS04110	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS04120	PWY-6167	flavin biosynthesis II (archaea)
JE55_RS04120	PWY-6168	flavin biosynthesis III (fungi)
JE55_RS04120	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
JE55_RS04125	PWY-6167	flavin biosynthesis II (archaea)
JE55_RS04125	PWY-6168	flavin biosynthesis III (fungi)
JE55_RS04145	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
JE55_RS04145	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
JE55_RS04145	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
JE55_RS04145	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
JE55_RS04145	PWY-6978	plastoquinol-9 biosynthesis II
JE55_RS04215	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
JE55_RS04285	PWY-5704	urea degradation II
JE55_RS04290	PWY-5704	urea degradation II
JE55_RS04295	PWY-5704	urea degradation II
JE55_RS04315	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
JE55_RS04330	PWY-6749	CMP-legionaminate biosynthesis I
JE55_RS04350	PWY-3821	galactose degradation III
JE55_RS04350	PWY-6317	galactose degradation I (Leloir pathway)
JE55_RS04350	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
JE55_RS04350	PWY-6527	stachyose degradation
JE55_RS04350	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
JE55_RS04350	PWY-7344	UDP-D-galactose biosynthesis
JE55_RS04355	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JE55_RS04355	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JE55_RS04355	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JE55_RS04365	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JE55_RS04365	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JE55_RS04365	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JE55_RS04425	PWY-3221	dTDP-L-rhamnose biosynthesis II
JE55_RS04425	PWY-6808	dTDP-D-forosamine biosynthesis
JE55_RS04425	PWY-6942	dTDP-D-desosamine biosynthesis
JE55_RS04425	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
JE55_RS04425	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
JE55_RS04425	PWY-6974	dTDP-L-olivose biosynthesis
JE55_RS04425	PWY-6976	dTDP-L-mycarose biosynthesis
JE55_RS04425	PWY-7104	dTDP-L-megosamine biosynthesis
JE55_RS04425	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
JE55_RS04425	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
JE55_RS04425	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
JE55_RS04425	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
JE55_RS04425	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
JE55_RS04425	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
JE55_RS04425	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
JE55_RS04425	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
JE55_RS04425	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
JE55_RS04425	PWY-7688	JE55_RS04425
JE55_RS04430	PWY-3221	dTDP-L-rhamnose biosynthesis II
JE55_RS04430	PWY-6808	dTDP-D-forosamine biosynthesis
JE55_RS04430	PWY-6942	dTDP-D-desosamine biosynthesis
JE55_RS04430	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
JE55_RS04430	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
JE55_RS04430	PWY-6974	dTDP-L-olivose biosynthesis
JE55_RS04430	PWY-6976	dTDP-L-mycarose biosynthesis
JE55_RS04430	PWY-7104	dTDP-L-megosamine biosynthesis
JE55_RS04430	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
JE55_RS04430	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
JE55_RS04430	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
JE55_RS04430	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
JE55_RS04430	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
JE55_RS04430	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
JE55_RS04430	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
JE55_RS04430	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
JE55_RS04430	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
JE55_RS04430	PWY-7688	JE55_RS04430
JE55_RS04445	PWY-5686	UMP biosynthesis
JE55_RS04450	PWY-5686	UMP biosynthesis
JE55_RS04650	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS04650	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
JE55_RS04650	PWY-6538	caffeine degradation III (bacteria, via demethylation)
JE55_RS04650	PWY-6596	adenosine nucleotides degradation I
JE55_RS04650	PWY-6606	guanosine nucleotides degradation II
JE55_RS04650	PWY-6607	guanosine nucleotides degradation I
JE55_RS04650	PWY-6608	guanosine nucleotides degradation III
JE55_RS04650	PWY-6999	theophylline degradation
JE55_RS04655	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS04655	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
JE55_RS04655	PWY-6538	caffeine degradation III (bacteria, via demethylation)
JE55_RS04655	PWY-6596	adenosine nucleotides degradation I
JE55_RS04655	PWY-6606	guanosine nucleotides degradation II
JE55_RS04655	PWY-6607	guanosine nucleotides degradation I
JE55_RS04655	PWY-6608	guanosine nucleotides degradation III
JE55_RS04655	PWY-6999	theophylline degradation
JE55_RS04675	PWY-6832	2-aminoethylphosphonate degradation II
JE55_RS04690	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
JE55_RS04690	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
JE55_RS04745	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
JE55_RS04820	PWY-1622	formaldehyde assimilation I (serine pathway)
JE55_RS04820	PWY-181	photorespiration
JE55_RS04820	PWY-2161	folate polyglutamylation
JE55_RS04820	PWY-2201	folate transformations I
JE55_RS04820	PWY-3661	glycine betaine degradation I
JE55_RS04820	PWY-3661-1	glycine betaine degradation II (mammalian)
JE55_RS04820	PWY-3841	folate transformations II
JE55_RS04820	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS04885	PWY-3801	sucrose degradation II (sucrose synthase)
JE55_RS04885	PWY-6527	stachyose degradation
JE55_RS04885	PWY-7238	sucrose biosynthesis II
JE55_RS04885	PWY-7343	UDP-glucose biosynthesis
JE55_RS04895	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JE55_RS04895	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
JE55_RS04900	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JE55_RS04900	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
JE55_RS04915	PWY-6936	seleno-amino acid biosynthesis
JE55_RS04915	PWY-7274	D-cycloserine biosynthesis
JE55_RS04985	PWY-2201	folate transformations I
JE55_RS04985	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS05020	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
JE55_RS05025	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
JE55_RS05095	PWY-5659	GDP-mannose biosynthesis
JE55_RS05095	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
JE55_RS05120	PWY-2781	<i>cis</i>-zeatin biosynthesis
JE55_RS05125	PWY-2582	brassinosteroid biosynthesis II
JE55_RS05125	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
JE55_RS05125	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
JE55_RS05125	PWY-6948	sitosterol degradation to androstenedione
JE55_RS05125	PWY-699	brassinosteroid biosynthesis I
JE55_RS05125	PWY-7299	progesterone biosynthesis
JE55_RS05130	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JE55_RS05130	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
JE55_RS05130	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
JE55_RS05150	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
JE55_RS05150	PWY-6148	tetrahydromethanopterin biosynthesis
JE55_RS05150	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
JE55_RS05150	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
JE55_RS05160	PWY-6654	phosphopantothenate biosynthesis III
JE55_RS05165	PWY-5958	acridone alkaloid biosynthesis
JE55_RS05165	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
JE55_RS05165	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
JE55_RS05205	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
JE55_RS05205	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
JE55_RS05205	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
JE55_RS05235	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JE55_RS05235	PWY-6164	3-dehydroquinate biosynthesis I
JE55_RS05235	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
JE55_RS05250	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
JE55_RS05250	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
JE55_RS05250	PWY-6268	adenosylcobalamin salvage from cobalamin
JE55_RS05250	PWY-6269	adenosylcobalamin salvage from cobinamide II
JE55_RS05275	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JE55_RS05280	PWY-3341	L-proline biosynthesis III
JE55_RS05280	PWY-4981	L-proline biosynthesis II (from arginine)
JE55_RS05280	PWY-6344	L-ornithine degradation II (Stickland reaction)
JE55_RS05300	PWY-7399	methylphosphonate degradation II
JE55_RS05305	PWY-7399	methylphosphonate degradation II
JE55_RS05315	PWY-7399	methylphosphonate degradation II
JE55_RS05330	PWY-7399	methylphosphonate degradation II
JE55_RS05340	PWY-5532	adenosine nucleotides degradation IV
JE55_RS05345	PWY-5532	adenosine nucleotides degradation IV
JE55_RS05375	PWY-5506	methanol oxidation to formaldehyde IV
JE55_RS05390	PWY-6700	queuosine biosynthesis
JE55_RS05395	PWY-6700	queuosine biosynthesis
JE55_RS05465	PWY-6825	phosphatidylcholine biosynthesis V
JE55_RS05550	PWY-6123	inosine-5'-phosphate biosynthesis I
JE55_RS05550	PWY-6124	inosine-5'-phosphate biosynthesis II
JE55_RS05550	PWY-7234	inosine-5'-phosphate biosynthesis III
JE55_RS05645	PWY-5686	UMP biosynthesis
JE55_RS05725	PWY-6123	inosine-5'-phosphate biosynthesis I
JE55_RS05725	PWY-6124	inosine-5'-phosphate biosynthesis II
JE55_RS05725	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS05725	PWY-7234	inosine-5'-phosphate biosynthesis III
JE55_RS05730	PWY-5530	sorbitol biosynthesis II
JE55_RS05730	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JE55_RS05740	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JE55_RS05740	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
JE55_RS05740	PWY-7242	D-fructuronate degradation
JE55_RS05740	PWY-7310	D-glucosaminate degradation
JE55_RS05740	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
JE55_RS05745	PWY-5101	L-isoleucine biosynthesis II
JE55_RS05745	PWY-5103	L-isoleucine biosynthesis III
JE55_RS05745	PWY-5104	L-isoleucine biosynthesis IV
JE55_RS05745	PWY-7111	pyruvate fermentation to isobutanol (engineered)
JE55_RS05760	PWY-3341	L-proline biosynthesis III
JE55_RS05760	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
JE55_RS05790	PWY-2941	L-lysine biosynthesis II
JE55_RS05790	PWY-2942	L-lysine biosynthesis III
JE55_RS05790	PWY-5097	L-lysine biosynthesis VI
JE55_RS05805	PWY-5694	allantoin degradation to glyoxylate I
JE55_RS05805	PWY-5705	allantoin degradation to glyoxylate III
JE55_RS05810	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
JE55_RS05830	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
JE55_RS05830	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS05830	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
JE55_RS05830	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
JE55_RS05835	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JE55_RS05835	PWY-6416	quinate degradation II
JE55_RS05835	PWY-6707	gallate biosynthesis
JE55_RS05845	PWY-1042	glycolysis IV (plant cytosol)
JE55_RS05845	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS05845	PWY-6901	superpathway of glucose and xylose degradation
JE55_RS05845	PWY-7003	glycerol degradation to butanol
JE55_RS05850	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JE55_RS05850	PWY-5723	Rubisco shunt
JE55_RS05850	PWY-6891	thiazole biosynthesis II (Bacillus)
JE55_RS05850	PWY-6892	thiazole biosynthesis I (E. coli)
JE55_RS05850	PWY-6901	superpathway of glucose and xylose degradation
JE55_RS05850	PWY-7560	methylerythritol phosphate pathway II
JE55_RS05865	PWY-2201	folate transformations I
JE55_RS05885	PWY-1281	sulfoacetaldehyde degradation I
JE55_RS05885	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
JE55_RS05885	PWY-5482	pyruvate fermentation to acetate II
JE55_RS05885	PWY-5485	pyruvate fermentation to acetate IV
JE55_RS05885	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS05885	PWY-6637	sulfolactate degradation II
JE55_RS05885	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
JE55_RS05890	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
JE55_RS05890	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
JE55_RS05890	PWY-6896	thiamin salvage I
JE55_RS05890	PWY-6897	thiamin salvage II
JE55_RS05905	PWY-5686	UMP biosynthesis
JE55_RS05940	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JE55_RS05940	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
JE55_RS05940	PWY-7242	D-fructuronate degradation
JE55_RS05940	PWY-7310	D-glucosaminate degradation
JE55_RS05940	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
JE55_RS05945	PWY-7130	L-glucose degradation
JE55_RS05970	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JE55_RS06000	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JE55_RS06000	PWY-6416	quinate degradation II
JE55_RS06000	PWY-6707	gallate biosynthesis
JE55_RS06045	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JE55_RS06045	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS06045	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JE55_RS06045	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JE55_RS06045	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS06045	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS06045	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS06045	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
JE55_RS06050	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JE55_RS06050	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS06050	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JE55_RS06050	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JE55_RS06050	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS06050	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS06050	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS06050	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
JE55_RS06100	PWY-3341	L-proline biosynthesis III
JE55_RS06100	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
JE55_RS06245	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS06265	PWY-2201	folate transformations I
JE55_RS06265	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS06290	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JE55_RS06290	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JE55_RS06295	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JE55_RS06295	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JE55_RS06300	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JE55_RS06300	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
JE55_RS06300	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JE55_RS06300	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JE55_RS06310	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JE55_RS06310	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JE55_RS06315	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JE55_RS06315	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JE55_RS06315	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JE55_RS06320	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JE55_RS06320	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JE55_RS06340	PWY-2201	folate transformations I
JE55_RS06405	PWY-1361	benzoyl-CoA degradation I (aerobic)
JE55_RS06405	PWY-2361	3-oxoadipate degradation
JE55_RS06405	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
JE55_RS06420	PWY-1341	phenylacetate degradation II (anaerobic)
JE55_RS06420	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
JE55_RS06420	PWY-7716	JE55_RS06420
JE55_RS06440	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JE55_RS06440	PWY-5723	Rubisco shunt
JE55_RS06445	PWY-181	photorespiration
JE55_RS06450	PWY-5958	acridone alkaloid biosynthesis
JE55_RS06450	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
JE55_RS06450	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
JE55_RS06455	PWY-5958	acridone alkaloid biosynthesis
JE55_RS06455	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
JE55_RS06455	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
JE55_RS06600	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JE55_RS06920	PWY-3781	aerobic respiration I (cytochrome c)
JE55_RS06920	PWY-6692	Fe(II) oxidation
JE55_RS06920	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
JE55_RS06920	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
JE55_RS07015	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JE55_RS07015	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JE55_RS07065	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
JE55_RS07065	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
JE55_RS07065	PWY-6897	thiamin salvage II
JE55_RS07065	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
JE55_RS07065	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
JE55_RS07065	PWY-7356	thiamin salvage IV (yeast)
JE55_RS07065	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
JE55_RS07070	PWY-6891	thiazole biosynthesis II (Bacillus)
JE55_RS07070	PWY-6892	thiazole biosynthesis I (E. coli)
JE55_RS07155	PWY-6164	3-dehydroquinate biosynthesis I
JE55_RS07160	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JE55_RS07200	PWY-2941	L-lysine biosynthesis II
JE55_RS07200	PWY-2942	L-lysine biosynthesis III
JE55_RS07200	PWY-5097	L-lysine biosynthesis VI
JE55_RS07235	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JE55_RS07235	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
JE55_RS07520	PWY-5176	coumarin biosynthesis (via 2-coumarate)
JE55_RS07580	PWY-1281	sulfoacetaldehyde degradation I
JE55_RS07580	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
JE55_RS07580	PWY-5482	pyruvate fermentation to acetate II
JE55_RS07580	PWY-5485	pyruvate fermentation to acetate IV
JE55_RS07580	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS07580	PWY-6637	sulfolactate degradation II
JE55_RS07580	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
JE55_RS07585	PWY-5686	UMP biosynthesis
JE55_RS07600	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS07600	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS07800	PWY-2201	folate transformations I
JE55_RS07850	PWY-723	alkylnitronates degradation
JE55_RS07860	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
JE55_RS07865	PWY-2201	folate transformations I
JE55_RS07865	PWY-3841	folate transformations II
JE55_RS07875	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
JE55_RS08045	PWY-4381	fatty acid biosynthesis initiation I
JE55_RS08055	PWY-4381	fatty acid biosynthesis initiation I
JE55_RS08235	PWY-6986	alginate degradation
JE55_RS08375	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
JE55_RS08375	PWY-6853	ethylene biosynthesis II (microbes)
JE55_RS08375	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
JE55_RS08390	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
JE55_RS08390	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
JE55_RS08420	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS08430	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS08535	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
JE55_RS08535	PWY-7494	choline degradation IV
JE55_RS08540	PWY-5642	2,4-dinitrotoluene degradation
JE55_RS08540	PWY-6373	acrylate degradation
JE55_RS08560	PWY-6134	L-tyrosine biosynthesis IV
JE55_RS08560	PWY-7158	L-phenylalanine degradation V
JE55_RS08565	PWY-7158	L-phenylalanine degradation V
JE55_RS08610	PWY-6840	homoglutathione biosynthesis
JE55_RS08610	PWY-7255	ergothioneine biosynthesis I (bacteria)
JE55_RS08880	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
JE55_RS08880	PWY-7494	choline degradation IV
JE55_RS08920	PWY-1361	benzoyl-CoA degradation I (aerobic)
JE55_RS08920	PWY-5109	2-methylbutanoate biosynthesis
JE55_RS08920	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
JE55_RS08920	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
JE55_RS08920	PWY-5177	glutaryl-CoA degradation
JE55_RS08920	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JE55_RS08920	PWY-6435	4-hydroxybenzoate biosynthesis V
JE55_RS08920	PWY-6583	pyruvate fermentation to butanol I
JE55_RS08920	PWY-6863	pyruvate fermentation to hexanol
JE55_RS08920	PWY-6883	pyruvate fermentation to butanol II
JE55_RS08920	PWY-6944	androstenedione degradation
JE55_RS08920	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
JE55_RS08920	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
JE55_RS08920	PWY-7007	methyl ketone biosynthesis
JE55_RS08920	PWY-7046	4-coumarate degradation (anaerobic)
JE55_RS08920	PWY-7094	fatty acid salvage
JE55_RS08920	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
JE55_RS08920	PWY-735	jasmonic acid biosynthesis
JE55_RS08920	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
JE55_RS08920	PWY-7606	docosahexaenoate biosynthesis III (mammals)
JE55_RS08920	PWY-7726	JE55_RS08920
JE55_RS09110	PWY-6840	homoglutathione biosynthesis
JE55_RS09110	PWY-7255	ergothioneine biosynthesis I (bacteria)
JE55_RS09150	PWY-43	putrescine biosynthesis II
JE55_RS09240	PWY-6825	phosphatidylcholine biosynthesis V
JE55_RS09265	PWY-6703	preQ<sub>0</sub> biosynthesis
JE55_RS09270	PWY-6703	preQ<sub>0</sub> biosynthesis
JE55_RS09320	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
JE55_RS09370	PWY-5344	L-homocysteine biosynthesis
JE55_RS09385	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS09385	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS09440	PWY-2941	L-lysine biosynthesis II
JE55_RS09440	PWY-5097	L-lysine biosynthesis VI
JE55_RS09450	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
JE55_RS09450	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
JE55_RS09520	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
JE55_RS09520	PWY-7494	choline degradation IV
JE55_RS09535	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS09875	PWY-5129	sphingolipid biosynthesis (plants)
JE55_RS09915	PWY-4081	glutathione redox reactions I
JE55_RS09920	PWY-4983	L-citrulline-nitric oxide cycle
JE55_RS09920	PWY-4984	urea cycle
JE55_RS09920	PWY-5	canavanine biosynthesis
JE55_RS09920	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS09920	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS10000	PWY-6749	CMP-legionaminate biosynthesis I
JE55_RS10005	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
JE55_RS10005	PWY-5667	CDP-diacylglycerol biosynthesis I
JE55_RS10005	PWY-6453	stigma estolide biosynthesis
JE55_RS10005	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
JE55_RS10005	PWY-7587	oleate biosynthesis III (cyanobacteria)
JE55_RS10015	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
JE55_RS10015	PWY-6148	tetrahydromethanopterin biosynthesis
JE55_RS10015	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
JE55_RS10015	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
JE55_RS10085	PWY-723	alkylnitronates degradation
JE55_RS10115	PWY-5074	mevalonate degradation
JE55_RS10190	PWY-2941	L-lysine biosynthesis II
JE55_RS10190	PWY-2942	L-lysine biosynthesis III
JE55_RS10190	PWY-5097	L-lysine biosynthesis VI
JE55_RS10265	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
JE55_RS10265	PWY-5491	diethylphosphate degradation
JE55_RS10270	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
JE55_RS10270	PWY-5491	diethylphosphate degradation
JE55_RS10290	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
JE55_RS10295	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
JE55_RS10300	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JE55_RS10300	PWY-6578	8-amino-7-oxononanoate biosynthesis III
JE55_RS10300	PWY-7147	8-amino-7-oxononanoate biosynthesis II
JE55_RS10330	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
JE55_RS10330	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS10330	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
JE55_RS10330	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
JE55_RS10390	PWY-2201	folate transformations I
JE55_RS10390	PWY-3841	folate transformations II
JE55_RS10450	PWY-3961	phosphopantothenate biosynthesis II
JE55_RS10505	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JE55_RS10505	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JE55_RS10530	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
JE55_RS10530	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
JE55_RS10535	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
JE55_RS10535	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
JE55_RS10550	PWY-4041	&gamma;-glutamyl cycle
JE55_RS10550	PWY-5826	hypoglycin biosynthesis
JE55_RS10565	PWY-1361	benzoyl-CoA degradation I (aerobic)
JE55_RS10565	PWY-5109	2-methylbutanoate biosynthesis
JE55_RS10565	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
JE55_RS10565	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
JE55_RS10565	PWY-5177	glutaryl-CoA degradation
JE55_RS10565	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JE55_RS10565	PWY-6435	4-hydroxybenzoate biosynthesis V
JE55_RS10565	PWY-6583	pyruvate fermentation to butanol I
JE55_RS10565	PWY-6863	pyruvate fermentation to hexanol
JE55_RS10565	PWY-6883	pyruvate fermentation to butanol II
JE55_RS10565	PWY-6944	androstenedione degradation
JE55_RS10565	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
JE55_RS10565	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
JE55_RS10565	PWY-7007	methyl ketone biosynthesis
JE55_RS10565	PWY-7046	4-coumarate degradation (anaerobic)
JE55_RS10565	PWY-7094	fatty acid salvage
JE55_RS10565	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
JE55_RS10565	PWY-735	jasmonic acid biosynthesis
JE55_RS10565	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
JE55_RS10565	PWY-7606	docosahexaenoate biosynthesis III (mammals)
JE55_RS10565	PWY-7726	JE55_RS10565
JE55_RS10690	PWY-1622	formaldehyde assimilation I (serine pathway)
JE55_RS10690	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS10710	PWY-5667	CDP-diacylglycerol biosynthesis I
JE55_RS10710	PWY-5981	CDP-diacylglycerol biosynthesis III
JE55_RS10720	PWY-6004	glycine betaine biosynthesis V (from glycine)
JE55_RS10730	PWY-2201	folate transformations I
JE55_RS10730	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JE55_RS10745	PWY-3781	aerobic respiration I (cytochrome c)
JE55_RS10745	PWY-4521	arsenite oxidation I (respiratory)
JE55_RS10745	PWY-6692	Fe(II) oxidation
JE55_RS10745	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
JE55_RS10865	PWY-6409	pyoverdine I biosynthesis
JE55_RS10865	PWY-6562	norspermidine biosynthesis
JE55_RS10865	PWY-761	rhizobactin 1021 biosynthesis
JE55_RS10920	PWY-4381	fatty acid biosynthesis initiation I
JE55_RS10965	PWY-6906	chitin derivatives degradation
JE55_RS10965	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
JE55_RS10965	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
JE55_RS10985	PWY-6902	chitin degradation II
JE55_RS10995	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
JE55_RS11035	PWY-6871	3-methylbutanol biosynthesis
JE55_RS11060	PWY-6683	sulfate reduction III (assimilatory)
JE55_RS11080	PWY-6825	phosphatidylcholine biosynthesis V
JE55_RS11100	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
JE55_RS11120	PWY-7560	methylerythritol phosphate pathway II
JE55_RS11190	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JE55_RS11190	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
JE55_RS11205	PWY-6605	adenine and adenosine salvage II
JE55_RS11205	PWY-6610	adenine and adenosine salvage IV
JE55_RS11220	PWY-2201	folate transformations I
JE55_RS11220	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS11355	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
JE55_RS11355	PWY-581	indole-3-acetate biosynthesis II
JE55_RS11355	PWY-7308	acrylonitrile degradation I
JE55_RS11360	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
JE55_RS11360	PWY-581	indole-3-acetate biosynthesis II
JE55_RS11360	PWY-7308	acrylonitrile degradation I
JE55_RS11390	PWY-5659	GDP-mannose biosynthesis
JE55_RS11390	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
JE55_RS11455	PWY-6655	xanthan biosynthesis
JE55_RS11455	PWY-6658	acetan biosynthesis
JE55_RS11510	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JE55_RS11530	PWY-6700	queuosine biosynthesis
JE55_RS11560	PWY-5839	menaquinol-7 biosynthesis
JE55_RS11560	PWY-5844	menaquinol-9 biosynthesis
JE55_RS11560	PWY-5849	menaquinol-6 biosynthesis
JE55_RS11560	PWY-5890	menaquinol-10 biosynthesis
JE55_RS11560	PWY-5891	menaquinol-11 biosynthesis
JE55_RS11560	PWY-5892	menaquinol-12 biosynthesis
JE55_RS11560	PWY-5895	menaquinol-13 biosynthesis
JE55_RS11600	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
JE55_RS11620	PWY-1361	benzoyl-CoA degradation I (aerobic)
JE55_RS11620	PWY-5109	2-methylbutanoate biosynthesis
JE55_RS11620	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
JE55_RS11620	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
JE55_RS11620	PWY-5177	glutaryl-CoA degradation
JE55_RS11620	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JE55_RS11620	PWY-6435	4-hydroxybenzoate biosynthesis V
JE55_RS11620	PWY-6583	pyruvate fermentation to butanol I
JE55_RS11620	PWY-6863	pyruvate fermentation to hexanol
JE55_RS11620	PWY-6883	pyruvate fermentation to butanol II
JE55_RS11620	PWY-6944	androstenedione degradation
JE55_RS11620	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
JE55_RS11620	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
JE55_RS11620	PWY-7007	methyl ketone biosynthesis
JE55_RS11620	PWY-7046	4-coumarate degradation (anaerobic)
JE55_RS11620	PWY-7094	fatty acid salvage
JE55_RS11620	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
JE55_RS11620	PWY-735	jasmonic acid biosynthesis
JE55_RS11620	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
JE55_RS11620	PWY-7606	docosahexaenoate biosynthesis III (mammals)
JE55_RS11620	PWY-7726	JE55_RS11620
JE55_RS11680	PWY-7294	xylose degradation IV
JE55_RS11680	PWY-7295	L-arabinose degradation IV
JE55_RS11695	PWY-5386	methylglyoxal degradation I
JE55_RS11775	PWY-6167	flavin biosynthesis II (archaea)
JE55_RS11775	PWY-6168	flavin biosynthesis III (fungi)
JE55_RS11800	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JE55_RS11805	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JE55_RS11820	PWY-4261	glycerol degradation I
JE55_RS11825	PWY-4261	glycerol degradation I
JE55_RS11825	PWY-6118	glycerol-3-phosphate shuttle
JE55_RS11825	PWY-6952	glycerophosphodiester degradation
JE55_RS11845	PWY-4041	&gamma;-glutamyl cycle
JE55_RS11845	PWY-5826	hypoglycin biosynthesis
JE55_RS11880	PWY-1042	glycolysis IV (plant cytosol)
JE55_RS11880	PWY-1622	formaldehyde assimilation I (serine pathway)
JE55_RS11880	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JE55_RS11880	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS11880	PWY-5723	Rubisco shunt
JE55_RS11880	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS11880	PWY-6886	1-butanol autotrophic biosynthesis
JE55_RS11880	PWY-6901	superpathway of glucose and xylose degradation
JE55_RS11880	PWY-7003	glycerol degradation to butanol
JE55_RS11880	PWY-7124	ethylene biosynthesis V (engineered)
JE55_RS11880	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
JE55_RS11885	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
JE55_RS11990	PWY-5381	pyridine nucleotide cycling (plants)
JE55_RS12020	PWY-3781	aerobic respiration I (cytochrome c)
JE55_RS12020	PWY-4521	arsenite oxidation I (respiratory)
JE55_RS12020	PWY-6692	Fe(II) oxidation
JE55_RS12020	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
JE55_RS12035	PWY-1042	glycolysis IV (plant cytosol)
JE55_RS12035	PWY-1622	formaldehyde assimilation I (serine pathway)
JE55_RS12035	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JE55_RS12035	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS12035	PWY-5723	Rubisco shunt
JE55_RS12035	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS12035	PWY-6886	1-butanol autotrophic biosynthesis
JE55_RS12035	PWY-6901	superpathway of glucose and xylose degradation
JE55_RS12035	PWY-7003	glycerol degradation to butanol
JE55_RS12035	PWY-7124	ethylene biosynthesis V (engineered)
JE55_RS12035	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
JE55_RS12045	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
JE55_RS12180	PWY-5392	reductive TCA cycle II
JE55_RS12180	PWY-5537	pyruvate fermentation to acetate V
JE55_RS12180	PWY-5538	pyruvate fermentation to acetate VI
JE55_RS12180	PWY-5690	TCA cycle II (plants and fungi)
JE55_RS12180	PWY-5913	TCA cycle VI (obligate autotrophs)
JE55_RS12180	PWY-6728	methylaspartate cycle
JE55_RS12180	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JE55_RS12180	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
JE55_RS12185	PWY-5392	reductive TCA cycle II
JE55_RS12185	PWY-5537	pyruvate fermentation to acetate V
JE55_RS12185	PWY-5538	pyruvate fermentation to acetate VI
JE55_RS12185	PWY-5690	TCA cycle II (plants and fungi)
JE55_RS12185	PWY-5913	TCA cycle VI (obligate autotrophs)
JE55_RS12185	PWY-6728	methylaspartate cycle
JE55_RS12185	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JE55_RS12185	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
JE55_RS12255	PWY-5057	L-valine degradation II
JE55_RS12255	PWY-5076	L-leucine degradation III
JE55_RS12255	PWY-5078	L-isoleucine degradation II
JE55_RS12255	PWY-5101	L-isoleucine biosynthesis II
JE55_RS12255	PWY-5103	L-isoleucine biosynthesis III
JE55_RS12255	PWY-5104	L-isoleucine biosynthesis IV
JE55_RS12255	PWY-5108	L-isoleucine biosynthesis V
JE55_RS12270	PWY-1042	glycolysis IV (plant cytosol)
JE55_RS12270	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS12270	PWY-6886	1-butanol autotrophic biosynthesis
JE55_RS12270	PWY-6901	superpathway of glucose and xylose degradation
JE55_RS12270	PWY-7003	glycerol degradation to butanol
JE55_RS12275	PWY-1042	glycolysis IV (plant cytosol)
JE55_RS12275	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JE55_RS12275	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS12275	PWY-5723	Rubisco shunt
JE55_RS12275	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS12275	PWY-6886	1-butanol autotrophic biosynthesis
JE55_RS12275	PWY-6901	superpathway of glucose and xylose degradation
JE55_RS12275	PWY-7003	glycerol degradation to butanol
JE55_RS12275	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
JE55_RS12275	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JE55_RS12280	PWY-1042	glycolysis IV (plant cytosol)
JE55_RS12280	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JE55_RS12280	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS12280	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS12280	PWY-7385	1,3-propanediol biosynthesis (engineered)
JE55_RS12285	PWY-6123	inosine-5'-phosphate biosynthesis I
JE55_RS12285	PWY-6124	inosine-5'-phosphate biosynthesis II
JE55_RS12285	PWY-7234	inosine-5'-phosphate biosynthesis III
JE55_RS12290	PWY-6123	inosine-5'-phosphate biosynthesis I
JE55_RS12290	PWY-7234	inosine-5'-phosphate biosynthesis III
JE55_RS12315	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JE55_RS12315	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JE55_RS12385	PWY-4261	glycerol degradation I
JE55_RS12395	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
JE55_RS12395	PWY-3162	L-tryptophan degradation V (side chain pathway)
JE55_RS12395	PWY-5057	L-valine degradation II
JE55_RS12395	PWY-5076	L-leucine degradation III
JE55_RS12395	PWY-5078	L-isoleucine degradation II
JE55_RS12395	PWY-5079	L-phenylalanine degradation III
JE55_RS12395	PWY-5082	L-methionine degradation III
JE55_RS12395	PWY-5480	pyruvate fermentation to ethanol I
JE55_RS12395	PWY-5486	pyruvate fermentation to ethanol II
JE55_RS12395	PWY-5751	phenylethanol biosynthesis
JE55_RS12395	PWY-6313	serotonin degradation
JE55_RS12395	PWY-6333	acetaldehyde biosynthesis I
JE55_RS12395	PWY-6342	noradrenaline and adrenaline degradation
JE55_RS12395	PWY-6454	vancomycin resistance I
JE55_RS12395	PWY-6587	pyruvate fermentation to ethanol III
JE55_RS12395	PWY-6802	salidroside biosynthesis
JE55_RS12395	PWY-6871	3-methylbutanol biosynthesis
JE55_RS12395	PWY-6901	superpathway of glucose and xylose degradation
JE55_RS12395	PWY-7013	L-1,2-propanediol degradation
JE55_RS12395	PWY-7111	pyruvate fermentation to isobutanol (engineered)
JE55_RS12395	PWY-7118	chitin degradation to ethanol
JE55_RS12395	PWY-7396	butanol and isobutanol biosynthesis (engineered)
JE55_RS12400	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
JE55_RS12490	PWY-4261	glycerol degradation I
JE55_RS12495	PWY-6531	mannitol cycle
JE55_RS12515	PWY-6654	phosphopantothenate biosynthesis III
JE55_RS12535	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
JE55_RS12535	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
JE55_RS12540	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
JE55_RS12540	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
JE55_RS12540	PWY-7717	JE55_RS12540
JE55_RS12540	PWY-7733	JE55_RS12540
JE55_RS12540	PWY-7734	JE55_RS12540
JE55_RS12580	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
JE55_RS12580	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
JE55_RS12615	PWY-6700	queuosine biosynthesis
JE55_RS12650	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JE55_RS12650	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JE55_RS12655	PWY-4981	L-proline biosynthesis II (from arginine)
JE55_RS12655	PWY-4984	urea cycle
JE55_RS12655	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS12685	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JE55_RS12690	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JE55_RS12710	PWY-6854	ethylene biosynthesis III (microbes)
JE55_RS12740	PWY-6654	phosphopantothenate biosynthesis III
JE55_RS12815	PWY-5913	TCA cycle VI (obligate autotrophs)
JE55_RS12815	PWY-6549	L-glutamine biosynthesis III
JE55_RS12815	PWY-6728	methylaspartate cycle
JE55_RS12815	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JE55_RS12815	PWY-7124	ethylene biosynthesis V (engineered)
JE55_RS12815	PWY-7254	TCA cycle VII (acetate-producers)
JE55_RS12815	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
JE55_RS12855	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JE55_RS12855	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS12855	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS12855	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
JE55_RS12875	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
JE55_RS12875	PWY-6167	flavin biosynthesis II (archaea)
JE55_RS12875	PWY-6168	flavin biosynthesis III (fungi)
JE55_RS12880	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JE55_RS12880	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
JE55_RS12885	PWY-6825	phosphatidylcholine biosynthesis V
JE55_RS12900	PWY-5316	nicotine biosynthesis
JE55_RS12900	PWY-7342	superpathway of nicotine biosynthesis
JE55_RS12905	PWY-5316	nicotine biosynthesis
JE55_RS12905	PWY-5381	pyridine nucleotide cycling (plants)
JE55_RS12905	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
JE55_RS12905	PWY-7342	superpathway of nicotine biosynthesis
JE55_RS12915	PWY-5316	nicotine biosynthesis
JE55_RS12915	PWY-7342	superpathway of nicotine biosynthesis
JE55_RS13065	PWY-6683	sulfate reduction III (assimilatory)
JE55_RS13080	PWY-5278	sulfite oxidation III
JE55_RS13080	PWY-5340	sulfate activation for sulfonation
JE55_RS13080	PWY-6683	sulfate reduction III (assimilatory)
JE55_RS13080	PWY-6932	selenate reduction
JE55_RS13085	PWY-5278	sulfite oxidation III
JE55_RS13085	PWY-5340	sulfate activation for sulfonation
JE55_RS13085	PWY-6683	sulfate reduction III (assimilatory)
JE55_RS13085	PWY-6932	selenate reduction
JE55_RS13090	PWY-5194	siroheme biosynthesis
JE55_RS13090	PWY-5441	S-methyl-L-methionine cycle
JE55_RS13090	PWY-702	L-methionine biosynthesis II
JE55_RS13090	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JE55_RS13100	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JE55_RS13135	PWY-5101	L-isoleucine biosynthesis II
JE55_RS13135	PWY-5103	L-isoleucine biosynthesis III
JE55_RS13135	PWY-5104	L-isoleucine biosynthesis IV
JE55_RS13135	PWY-7111	pyruvate fermentation to isobutanol (engineered)
JE55_RS13160	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
JE55_RS13160	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
JE55_RS13185	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
JE55_RS13185	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
JE55_RS13185	PWY-6269	adenosylcobalamin salvage from cobinamide II
JE55_RS13190	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
JE55_RS13190	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
JE55_RS13190	PWY-6269	adenosylcobalamin salvage from cobinamide II
JE55_RS13195	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
JE55_RS13195	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
JE55_RS13195	PWY-6269	adenosylcobalamin salvage from cobinamide II
JE55_RS13210	PWY-5443	aminopropanol phosphate biosynthesis I
JE55_RS13220	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
JE55_RS13220	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
JE55_RS13220	PWY-6269	adenosylcobalamin salvage from cobinamide II
JE55_RS13240	PWY-5155	&beta;-alanine biosynthesis III
JE55_RS13295	PWY-6854	ethylene biosynthesis III (microbes)
JE55_RS13300	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS13320	PWY-4983	L-citrulline-nitric oxide cycle
JE55_RS13320	PWY-4984	urea cycle
JE55_RS13320	PWY-5	canavanine biosynthesis
JE55_RS13320	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS13320	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS13360	PWY-1622	formaldehyde assimilation I (serine pathway)
JE55_RS13360	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
JE55_RS13360	PWY-5913	TCA cycle VI (obligate autotrophs)
JE55_RS13360	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS13360	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
JE55_RS13360	PWY-6549	L-glutamine biosynthesis III
JE55_RS13360	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
JE55_RS13360	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
JE55_RS13360	PWY-7124	ethylene biosynthesis V (engineered)
JE55_RS13370	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JE55_RS13370	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
JE55_RS13375	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JE55_RS13375	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
JE55_RS13755	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
JE55_RS13755	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
JE55_RS13755	PWY-6148	tetrahydromethanopterin biosynthesis
JE55_RS13785	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JE55_RS13785	PWY-5723	Rubisco shunt
JE55_RS14125	PWY-6825	phosphatidylcholine biosynthesis V
JE55_RS14135	PWY-5381	pyridine nucleotide cycling (plants)
JE55_RS14135	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
JE55_RS14140	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
JE55_RS14140	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
JE55_RS14145	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JE55_RS14145	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
JE55_RS14145	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
JE55_RS14155	PWY-7183	pyrimidine nucleobases salvage I
JE55_RS14245	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
JE55_RS14275	PWY-7039	phosphatidate metabolism, as a signaling molecule
JE55_RS14310	PWY-5101	L-isoleucine biosynthesis II
JE55_RS14310	PWY-5103	L-isoleucine biosynthesis III
JE55_RS14310	PWY-5104	L-isoleucine biosynthesis IV
JE55_RS14310	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
JE55_RS14310	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
JE55_RS14310	PWY-6389	(<i>S</i>)-acetoin biosynthesis
JE55_RS14310	PWY-7111	pyruvate fermentation to isobutanol (engineered)
JE55_RS14315	PWY-5101	L-isoleucine biosynthesis II
JE55_RS14315	PWY-5103	L-isoleucine biosynthesis III
JE55_RS14315	PWY-5104	L-isoleucine biosynthesis IV
JE55_RS14315	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
JE55_RS14315	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
JE55_RS14315	PWY-6389	(<i>S</i>)-acetoin biosynthesis
JE55_RS14315	PWY-7111	pyruvate fermentation to isobutanol (engineered)
JE55_RS14320	PWY-5103	L-isoleucine biosynthesis III
JE55_RS14320	PWY-7111	pyruvate fermentation to isobutanol (engineered)
JE55_RS14325	PWY-5669	phosphatidylethanolamine biosynthesis I
JE55_RS14330	PWY-5669	phosphatidylethanolamine biosynthesis I
JE55_RS14335	PWY-6871	3-methylbutanol biosynthesis
JE55_RS14345	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
JE55_RS14345	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS14345	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
JE55_RS14345	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
JE55_RS14380	PWY-1042	glycolysis IV (plant cytosol)
JE55_RS14380	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS14380	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JE55_RS14380	PWY-7003	glycerol degradation to butanol
JE55_RS14455	PWY-3781	aerobic respiration I (cytochrome c)
JE55_RS14455	PWY-4302	aerobic respiration III (alternative oxidase pathway)
JE55_RS14455	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
JE55_RS14455	PWY-6692	Fe(II) oxidation
JE55_RS14665	PWY-3781	aerobic respiration I (cytochrome c)
JE55_RS14665	PWY-4521	arsenite oxidation I (respiratory)
JE55_RS14665	PWY-6692	Fe(II) oxidation
JE55_RS14665	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
JE55_RS14740	PWY-5331	taurine biosynthesis
JE55_RS14830	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
JE55_RS14975	PWY-6749	CMP-legionaminate biosynthesis I
JE55_RS15010	PWY-6683	sulfate reduction III (assimilatory)
JE55_RS15055	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JE55_RS15060	PWY-1361	benzoyl-CoA degradation I (aerobic)
JE55_RS15060	PWY-5109	2-methylbutanoate biosynthesis
JE55_RS15060	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
JE55_RS15060	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
JE55_RS15060	PWY-5177	glutaryl-CoA degradation
JE55_RS15060	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JE55_RS15060	PWY-6435	4-hydroxybenzoate biosynthesis V
JE55_RS15060	PWY-6583	pyruvate fermentation to butanol I
JE55_RS15060	PWY-6863	pyruvate fermentation to hexanol
JE55_RS15060	PWY-6883	pyruvate fermentation to butanol II
JE55_RS15060	PWY-6944	androstenedione degradation
JE55_RS15060	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
JE55_RS15060	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
JE55_RS15060	PWY-7007	methyl ketone biosynthesis
JE55_RS15060	PWY-7046	4-coumarate degradation (anaerobic)
JE55_RS15060	PWY-7094	fatty acid salvage
JE55_RS15060	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
JE55_RS15060	PWY-735	jasmonic acid biosynthesis
JE55_RS15060	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
JE55_RS15060	PWY-7606	docosahexaenoate biosynthesis III (mammals)
JE55_RS15060	PWY-7726	JE55_RS15060
JE55_RS15085	PWY-5794	malonate degradation I (biotin-independent)
JE55_RS15085	PWY-6060	malonate degradation II (biotin-dependent)
JE55_RS15095	PWY-4381	fatty acid biosynthesis initiation I
JE55_RS15095	PWY-5743	3-hydroxypropanoate cycle
JE55_RS15095	PWY-5744	glyoxylate assimilation
JE55_RS15095	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JE55_RS15095	PWY-6060	malonate degradation II (biotin-dependent)
JE55_RS15095	PWY-6679	jadomycin biosynthesis
JE55_RS15095	PWY-6722	candicidin biosynthesis
JE55_RS15095	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JE55_RS15100	PWY-4381	fatty acid biosynthesis initiation I
JE55_RS15100	PWY-5743	3-hydroxypropanoate cycle
JE55_RS15100	PWY-5744	glyoxylate assimilation
JE55_RS15100	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JE55_RS15100	PWY-6060	malonate degradation II (biotin-dependent)
JE55_RS15100	PWY-6679	jadomycin biosynthesis
JE55_RS15100	PWY-6722	candicidin biosynthesis
JE55_RS15100	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JE55_RS15105	PWY-5796	malonate decarboxylase activation
JE55_RS15110	PWY-5796	malonate decarboxylase activation
JE55_RS15170	PWY-5386	methylglyoxal degradation I
JE55_RS15195	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS15195	PWY-5686	UMP biosynthesis
JE55_RS15195	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS15205	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS15205	PWY-5686	UMP biosynthesis
JE55_RS15205	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS15235	PWY-6614	tetrahydrofolate biosynthesis
JE55_RS15240	PWY-6749	CMP-legionaminate biosynthesis I
JE55_RS15380	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
JE55_RS15440	PWY-2661	trehalose biosynthesis V
JE55_RS15445	PWY-5941	glycogen degradation II (eukaryotic)
JE55_RS15445	PWY-6724	starch degradation II
JE55_RS15445	PWY-6737	starch degradation V
JE55_RS15445	PWY-7238	sucrose biosynthesis II
JE55_RS15450	PWY-2661	trehalose biosynthesis V
JE55_RS15450	PWY-6902	chitin degradation II
JE55_RS15460	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
JE55_RS15460	PWY-622	starch biosynthesis
JE55_RS15465	PWY-2622	trehalose biosynthesis IV
JE55_RS15500	PWY-6788	cellulose degradation II (fungi)
JE55_RS15790	PWY-5971	palmitate biosynthesis II (bacteria and plants)
JE55_RS15790	PWY-5973	<i>cis</i>-vaccenate biosynthesis
JE55_RS15790	PWY-5989	stearate biosynthesis II (bacteria and plants)
JE55_RS15790	PWY-6113	superpathway of mycolate biosynthesis
JE55_RS15790	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
JE55_RS15790	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JE55_RS15790	PWY-7663	gondoate biosynthesis (anaerobic)
JE55_RS15790	PWY-7664	oleate biosynthesis IV (anaerobic)
JE55_RS15790	PWYG-321	mycolate biosynthesis
JE55_RS15825	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JE55_RS15900	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
JE55_RS15980	PWY-3801	sucrose degradation II (sucrose synthase)
JE55_RS15980	PWY-6527	stachyose degradation
JE55_RS15980	PWY-7238	sucrose biosynthesis II
JE55_RS15980	PWY-7343	UDP-glucose biosynthesis
JE55_RS15995	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
JE55_RS15995	PWY-6153	autoinducer AI-2 biosynthesis I
JE55_RS15995	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
JE55_RS16060	PWY-7731	JE55_RS16060
JE55_RS16090	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JE55_RS16365	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
JE55_RS16370	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
JE55_RS16375	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
JE55_RS16375	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
JE55_RS16575	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JE55_RS16575	PWY-5723	Rubisco shunt
JE55_RS16600	PWY-5686	UMP biosynthesis
JE55_RS17020	PWY-4261	glycerol degradation I
JE55_RS17120	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
JE55_RS17120	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
JE55_RS17120	PWY-6268	adenosylcobalamin salvage from cobalamin
JE55_RS17120	PWY-6269	adenosylcobalamin salvage from cobinamide II
JE55_RS17180	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JE55_RS17185	PWY-5194	siroheme biosynthesis
JE55_RS17185	PWY-5441	S-methyl-L-methionine cycle
JE55_RS17185	PWY-702	L-methionine biosynthesis II
JE55_RS17185	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JE55_RS17195	PWY-6683	sulfate reduction III (assimilatory)
JE55_RS17200	PWY-2201	folate transformations I
JE55_RS17200	PWY-3841	folate transformations II
JE55_RS17200	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JE55_RS17205	PWY-2201	folate transformations I
JE55_RS17205	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JE55_RS17220	PWY-5194	siroheme biosynthesis
JE55_RS17220	PWY-5441	S-methyl-L-methionine cycle
JE55_RS17220	PWY-702	L-methionine biosynthesis II
JE55_RS17220	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JE55_RS17275	PWY-4981	L-proline biosynthesis II (from arginine)
JE55_RS17275	PWY-4984	urea cycle
JE55_RS17275	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS17280	PWY-4981	L-proline biosynthesis II (from arginine)
JE55_RS17400	PWY-4983	L-citrulline-nitric oxide cycle
JE55_RS17400	PWY-4984	urea cycle
JE55_RS17400	PWY-5	canavanine biosynthesis
JE55_RS17400	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS17400	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS17405	PWY-4983	L-citrulline-nitric oxide cycle
JE55_RS17405	PWY-4984	urea cycle
JE55_RS17405	PWY-5	canavanine biosynthesis
JE55_RS17405	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS17405	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS17430	PWY-4983	L-citrulline-nitric oxide cycle
JE55_RS17430	PWY-4984	urea cycle
JE55_RS17430	PWY-5	canavanine biosynthesis
JE55_RS17430	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
JE55_RS17430	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JE55_RS17560	PWY-5340	sulfate activation for sulfonation
JE55_RS17910	PWY-6748	nitrate reduction VII (denitrification)
JE55_RS17910	PWY-7084	nitrifier denitrification
JE55_RS17990	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
JE55_RS18210	PWY-723	alkylnitronates degradation
JE55_RS18575	PWY-6823	molybdenum cofactor biosynthesis
JE55_RS19525	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JE55_RS21265	PWY-4381	fatty acid biosynthesis initiation I
JE55_RS22050	PWY-2722	trehalose degradation IV
JE55_RS22050	PWY-2723	trehalose degradation V
JE55_RS22050	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
JE55_RS22050	PWY-5661	GDP-glucose biosynthesis
JE55_RS22050	PWY-621	sucrose degradation III (sucrose invertase)
JE55_RS22050	PWY-7238	sucrose biosynthesis II
JE55_RS22050	PWY-7385	1,3-propanediol biosynthesis (engineered)
JE55_RS22155	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
JE55_RS22740	PWY-1622	formaldehyde assimilation I (serine pathway)
JE55_RS22740	PWY-181	photorespiration
JE55_RS22740	PWY-2161	folate polyglutamylation
JE55_RS22740	PWY-2201	folate transformations I
JE55_RS22740	PWY-3661	glycine betaine degradation I
JE55_RS22740	PWY-3661-1	glycine betaine degradation II (mammalian)
JE55_RS22740	PWY-3841	folate transformations II
JE55_RS22740	PWY-5497	purine nucleobases degradation II (anaerobic)
JE55_RS22965	PWY-5659	GDP-mannose biosynthesis
JE55_RS22965	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
JE55_RS23375	PWY-6825	phosphatidylcholine biosynthesis V
JE55_RS23870	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JE55_RS23870	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS23870	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JE55_RS23870	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JE55_RS23870	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS23870	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JE55_RS23870	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
JE55_RS23870	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
JE55_RS24135	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JE55_RS24135	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JE55_RS24865	PWY-2941	L-lysine biosynthesis II
JE55_RS24865	PWY-2942	L-lysine biosynthesis III
JE55_RS24865	PWY-5097	L-lysine biosynthesis VI
JE55_RS27620	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
JE55_RS27620	PWY-5491	diethylphosphate degradation
JE55_RS27750	PWY-2201	folate transformations I
JE55_RS27750	PWY-3841	folate transformations II
JE55_RS28555	PWY-5659	GDP-mannose biosynthesis
JE55_RS28555	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
JE55_RS29010	PWY-4261	glycerol degradation I
JE55_RS29335	PWY-1042	glycolysis IV (plant cytosol)
JE55_RS29335	PWY-5484	glycolysis II (from fructose 6-phosphate)
JE55_RS29335	PWY-6886	1-butanol autotrophic biosynthesis
JE55_RS29335	PWY-6901	superpathway of glucose and xylose degradation
JE55_RS29335	PWY-7003	glycerol degradation to butanol
JE55_RS30145	PWY-5155	&beta;-alanine biosynthesis III
JE55_RS32150	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
JE55_RS32150	PWY-622	starch biosynthesis