JE55_RS00030 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS00060 SM00363 S4 RNA-binding domain JE55_RS00070 SM00491 JE55_RS00070 JE55_RS00085 SM00316 Ribosomal protein S1-like RNA-binding domain JE55_RS00085 SM00732 Likely ribonuclease with RNase H fold. JE55_RS00100 SM00788 Adenylosuccinate synthetase JE55_RS00115 SM00244 prohibitin homologues JE55_RS00120 SM00244 prohibitin homologues JE55_RS00135 SM00382 ATPases associated with a variety of cellular activities JE55_RS00140 SM00564 beta-propeller repeat JE55_RS00160 SM00530 Helix-turn-helix XRE-family like proteins JE55_RS00170 SM00562 JE55_RS00170 JE55_RS00205 SM00257 Lysin motif JE55_RS00225 SM00493 JE55_RS00225 JE55_RS00235 SM00382 ATPases associated with a variety of cellular activities JE55_RS00250 SM00357 Cold shock protein domain JE55_RS00250 SM00382 ATPases associated with a variety of cellular activities JE55_RS00250 SM00959 Rho termination factor, N-terminal domain JE55_RS00255 SM00422 helix_turn_helix, mercury resistance JE55_RS00290 SM00422 helix_turn_helix, mercury resistance JE55_RS00305 SM00382 ATPases associated with a variety of cellular activities JE55_RS00305 SM01086 C-terminal, D2-small domain, of ClpB protein JE55_RS00330 SM00852 Probable molybdopterin binding domain JE55_RS00395 SM00670 Large family of predicted nucleotide-binding domains JE55_RS00415 SM00382 ATPases associated with a variety of cellular activities JE55_RS00480 SM00257 Lysin motif JE55_RS00490 SM00870 JE55_RS00490 JE55_RS00535 SM00248 ankyrin repeats JE55_RS00585 SM00829 Enoylreductase JE55_RS00595 SM00886 Stress responsive A/B Barrel Domain JE55_RS00655 SM01211 JE55_RS00655 JE55_RS00680 SM00382 ATPases associated with a variety of cellular activities JE55_RS00730 SM00382 ATPases associated with a variety of cellular activities JE55_RS00730 SM00464 Found in ATP-dependent protease La (LON) JE55_RS00735 SM00382 ATPases associated with a variety of cellular activities JE55_RS00735 SM00994 ClpX C4-type zinc finger JE55_RS00735 SM01086 C-terminal, D2-small domain, of ClpB protein JE55_RS00755 SM00347 helix_turn_helix multiple antibiotic resistance protein JE55_RS00765 SM00421 helix_turn_helix, Lux Regulon JE55_RS00785 SM00155 Phospholipase D. Active site motifs. JE55_RS00855 SM00448 cheY-homologous receiver domain JE55_RS00855 SM00862 Transcriptional regulatory protein, C terminal JE55_RS00860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS00860 SM00387 Histidine kinase-like ATPases JE55_RS00860 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS00885 SM00487 DEAD-like helicases superfamily JE55_RS00885 SM00490 helicase superfamily c-terminal domain JE55_RS00885 SM00982 JE55_RS00885 JE55_RS00885 SM01058 CarD-like/TRCF domain JE55_RS01005 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS01005 SM00895 JE55_RS01005 JE55_RS01045 SM00116 Domain in cystathionine beta-synthase and other proteins. JE55_RS01045 SM01240 JE55_RS01045 JE55_RS01085 SM00244 prohibitin homologues JE55_RS01110 SM00944 Pro-kumamolisin, activation domain JE55_RS01150 SM00935 Outer membrane protein (OmpH-like) JE55_RS01160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JE55_RS01210 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JE55_RS01215 SM00363 S4 RNA-binding domain JE55_RS01225 SM00278 Helix-hairpin-helix DNA-binding motif class 1 JE55_RS01225 SM00292 breast cancer carboxy-terminal domain JE55_RS01225 SM00532 Ligase N family JE55_RS01235 SM00771 ZipA, C-terminal domain (FtsZ-binding) JE55_RS01240 SM00968 SMC proteins Flexible Hinge Domain JE55_RS01280 SM00155 Phospholipase D. Active site motifs. JE55_RS01290 SM00382 ATPases associated with a variety of cellular activities JE55_RS01300 SM00382 ATPases associated with a variety of cellular activities JE55_RS01305 SM01005 Alanine racemase, C-terminal domain JE55_RS01330 SM00986 Uracil DNA glycosylase superfamily JE55_RS01330 SM00987 UreE urease accessory protein, C-terminal domain JE55_RS01350 SM00487 DEAD-like helicases superfamily JE55_RS01350 SM00490 helicase superfamily c-terminal domain JE55_RS01390 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS01445 SM00382 ATPases associated with a variety of cellular activities JE55_RS01480 SM00926 Molybdopterin oxidoreductase Fe4S4 domain JE55_RS01495 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS01560 SM00861 Transketolase, pyrimidine binding domain JE55_RS01595 SM00823 Phosphopantetheine attachment site JE55_RS01595 SM01294 JE55_RS01595 JE55_RS01610 SM00823 Phosphopantetheine attachment site JE55_RS01640 SM00869 Autotransporter beta-domain JE55_RS01665 SM00977 TilS substrate C-terminal domain JE55_RS01675 SM00478 endonuclease III JE55_RS01680 SM00840 JE55_RS01680 JE55_RS01685 SM00028 Tetratricopeptide repeats JE55_RS01985 SM00533 DNA-binding domain of DNA mismatch repair MUTS family JE55_RS01985 SM00534 ATPase domain of DNA mismatch repair MUTS family JE55_RS02000 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. JE55_RS02005 SM00849 Metallo-beta-lactamase superfamily JE55_RS02015 SM01130 JE55_RS02015 JE55_RS02040 SM00481 DNA polymerase alpha chain like domain JE55_RS02075 SM01192 JE55_RS02075 JE55_RS02075 SM01193 JE55_RS02075 JE55_RS02095 SM00849 Metallo-beta-lactamase superfamily JE55_RS02105 SM00382 ATPases associated with a variety of cellular activities JE55_RS02125 SM00937 JE55_RS02125 JE55_RS02155 SM00271 DnaJ molecular chaperone homology domain JE55_RS02180 SM00226 Low molecular weight phosphatase family JE55_RS02200 SM00346 helix_turn_helix isocitrate lyase regulation JE55_RS02230 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) JE55_RS02230 SM00091 PAS domain JE55_RS02230 SM00387 Histidine kinase-like ATPases JE55_RS02230 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS02235 SM00421 helix_turn_helix, Lux Regulon JE55_RS02235 SM00448 cheY-homologous receiver domain JE55_RS02270 SM00926 Molybdopterin oxidoreductase Fe4S4 domain JE55_RS02290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS02290 SM00387 Histidine kinase-like ATPases JE55_RS02295 SM00421 helix_turn_helix, Lux Regulon JE55_RS02295 SM00448 cheY-homologous receiver domain JE55_RS02305 SM00382 ATPases associated with a variety of cellular activities JE55_RS02305 SM00448 cheY-homologous receiver domain JE55_RS02310 SM00387 Histidine kinase-like ATPases JE55_RS02310 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS02315 SM01230 JE55_RS02315 JE55_RS02320 SM00450 Rhodanese Homology Domain JE55_RS02325 SM00852 Probable molybdopterin binding domain JE55_RS02345 SM00382 ATPases associated with a variety of cellular activities JE55_RS02345 SM00487 DEAD-like helicases superfamily JE55_RS02345 SM00490 helicase superfamily c-terminal domain JE55_RS02345 SM00847 Helicase associated domain (HA2) Add an annotation JE55_RS02400 SM01230 JE55_RS02400 JE55_RS02450 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS02450 SM00866 JE55_RS02450 JE55_RS02475 SM00421 helix_turn_helix, Lux Regulon JE55_RS02560 SM00100 Cyclic nucleotide-monophosphate binding domain JE55_RS02560 SM00419 helix_turn_helix, cAMP Regulatory protein JE55_RS02565 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS02570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS02570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS02585 SM00382 ATPases associated with a variety of cellular activities JE55_RS02655 SM00062 Bacterial periplasmic substrate-binding proteins JE55_RS02695 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS02700 SM00382 ATPases associated with a variety of cellular activities JE55_RS02730 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS02790 SM00382 ATPases associated with a variety of cellular activities JE55_RS02900 SM00232 JAB/MPN domain JE55_RS02985 SM00843 JE55_RS02985 JE55_RS03000 SM00530 Helix-turn-helix XRE-family like proteins JE55_RS03075 SM00278 Helix-hairpin-helix DNA-binding motif class 1 JE55_RS03075 SM00465 GIY-YIG type nucleases (URI domain) JE55_RS03085 SM00841 Elongation factor P, C-terminal JE55_RS03085 SM01185 JE55_RS03085 JE55_RS03090 SM00382 ATPases associated with a variety of cellular activities JE55_RS03090 SM00448 cheY-homologous receiver domain JE55_RS03120 SM00358 Double-stranded RNA binding motif JE55_RS03120 SM00535 Ribonuclease III family JE55_RS03130 SM00838 Elongation factor G C-terminus JE55_RS03140 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JE55_RS03165 SM00825 Beta-ketoacyl synthase JE55_RS03175 SM00822 JE55_RS03175 JE55_RS03180 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. JE55_RS03230 SM00363 S4 RNA-binding domain JE55_RS03235 SM00316 Ribosomal protein S1-like RNA-binding domain JE55_RS03240 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS03250 SM00852 Probable molybdopterin binding domain JE55_RS03350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor JE55_RS03365 SM00382 ATPases associated with a variety of cellular activities JE55_RS03395 SM00382 ATPases associated with a variety of cellular activities JE55_RS03420 SM00852 Probable molybdopterin binding domain JE55_RS03425 SM00479 JE55_RS03425 JE55_RS03490 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS03495 SM00344 helix_turn_helix ASNC type JE55_RS03510 SM00893 Electron transfer flavoprotein domain JE55_RS03515 SM00893 Electron transfer flavoprotein domain JE55_RS03530 SM00382 ATPases associated with a variety of cellular activities JE55_RS03530 SM00930 JE55_RS03530 JE55_RS03560 SM00278 Helix-hairpin-helix DNA-binding motif class 1 JE55_RS03575 SM00984 UDP binding domain JE55_RS03580 SM00028 Tetratricopeptide repeats JE55_RS03590 SM00411 bacterial (prokaryotic) histone like domain JE55_RS03595 SM00316 Ribosomal protein S1-like RNA-binding domain JE55_RS03610 SM00830 Chorismate mutase type II JE55_RS03625 SM00434 DNA Topoisomerase IV JE55_RS03665 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JE55_RS03670 SM00926 Molybdopterin oxidoreductase Fe4S4 domain JE55_RS03670 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JE55_RS03685 SM00028 Tetratricopeptide repeats JE55_RS03820 SM00830 Chorismate mutase type II JE55_RS03825 SM00479 JE55_RS03825 JE55_RS03830 SM00357 Cold shock protein domain JE55_RS03860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JE55_RS03860 SM00954 Region found in RelA / SpoT proteins JE55_RS03865 SM01409 JE55_RS03865 JE55_RS03870 SM00072 Guanylate kinase homologues. JE55_RS03890 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS03995 SM00382 ATPases associated with a variety of cellular activities JE55_RS04005 SM00843 JE55_RS04005 JE55_RS04015 SM00463 Small MutS-related domain JE55_RS04025 SM00382 ATPases associated with a variety of cellular activities JE55_RS04060 SM00062 Bacterial periplasmic substrate-binding proteins JE55_RS04070 SM00382 ATPases associated with a variety of cellular activities JE55_RS04230 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS04240 SM00650 Ribosomal RNA adenine dimethylases JE55_RS04245 SM00450 Rhodanese Homology Domain JE55_RS04275 SM00382 ATPases associated with a variety of cellular activities JE55_RS04300 SM00988 UreE urease accessory protein, N-terminal domain JE55_RS04405 SM00382 ATPases associated with a variety of cellular activities JE55_RS04440 SM00563 Phosphate acyltransferases JE55_RS04460 SM00732 Likely ribonuclease with RNase H fold. JE55_RS04490 SM00883 Chaperonin 10 Kd subunit JE55_RS04505 SM00829 Enoylreductase JE55_RS04540 SM00849 Metallo-beta-lactamase superfamily JE55_RS04545 SM00530 Helix-turn-helix XRE-family like proteins JE55_RS04625 SM00382 ATPases associated with a variety of cellular activities JE55_RS04650 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JE55_RS04655 SM01092 CO dehydrogenase flavoprotein C-terminal domain JE55_RS04670 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS04735 SM00849 Metallo-beta-lactamase superfamily JE55_RS04755 SM00346 helix_turn_helix isocitrate lyase regulation JE55_RS04935 SM00226 Low molecular weight phosphatase family JE55_RS04950 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS04990 SM00822 JE55_RS04990 JE55_RS04990 SM00823 Phosphopantetheine attachment site JE55_RS04990 SM00825 Beta-ketoacyl synthase JE55_RS04990 SM00826 JE55_RS04990 JE55_RS04990 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. JE55_RS04990 SM00829 Enoylreductase JE55_RS04990 SM01294 JE55_RS04990 JE55_RS05065 SM00382 ATPases associated with a variety of cellular activities JE55_RS05115 SM00853 MutL C terminal dimerisation domain JE55_RS05115 SM01340 JE55_RS05115 JE55_RS05170 SM00271 DnaJ molecular chaperone homology domain JE55_RS05190 SM00363 S4 RNA-binding domain JE55_RS05210 SM00382 ATPases associated with a variety of cellular activities JE55_RS05295 SM00382 ATPases associated with a variety of cellular activities JE55_RS05305 SM00382 ATPases associated with a variety of cellular activities JE55_RS05310 SM00382 ATPases associated with a variety of cellular activities JE55_RS05335 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS05335 SM00866 JE55_RS05335 JE55_RS05345 SM00072 Guanylate kinase homologues. JE55_RS05385 SM00487 DEAD-like helicases superfamily JE55_RS05385 SM00490 helicase superfamily c-terminal domain JE55_RS05400 SM01323 JE55_RS05400 JE55_RS05420 SM00867 YceI-like domain JE55_RS05425 SM00867 YceI-like domain JE55_RS05465 SM00981 JE55_RS05465 JE55_RS05505 SM01002 Alanine dehydrogenase/PNT, C-terminal domain JE55_RS05505 SM01003 Alanine dehydrogenase/PNT, N-terminal domain JE55_RS05530 SM01011 Aminopeptidase P, N-terminal domain JE55_RS05550 SM00798 AICARFT/IMPCHase bienzyme JE55_RS05550 SM00851 MGS-like domain JE55_RS05565 SM00278 Helix-hairpin-helix DNA-binding motif class 1 JE55_RS05570 SM00382 ATPases associated with a variety of cellular activities JE55_RS05585 SM00855 Phosphoglycerate mutase family JE55_RS05595 SM00363 S4 RNA-binding domain JE55_RS05615 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS05670 SM00883 Chaperonin 10 Kd subunit JE55_RS05690 SM00382 ATPases associated with a variety of cellular activities JE55_RS05705 SM00062 Bacterial periplasmic substrate-binding proteins JE55_RS05710 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JE55_RS05820 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS05820 SM00895 JE55_RS05820 JE55_RS05830 SM00947 Carbonic anhydrase JE55_RS05835 SM01116 JE55_RS05835 JE55_RS05845 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JE55_RS05850 SM00861 Transketolase, pyrimidine binding domain JE55_RS05885 SM00919 Malic enzyme, NAD binding domain JE55_RS05885 SM01274 JE55_RS05885 JE55_RS05905 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family JE55_RS05915 SM00822 JE55_RS05915 JE55_RS05925 SM00382 ATPases associated with a variety of cellular activities JE55_RS05935 SM00822 JE55_RS05935 JE55_RS05950 SM00346 helix_turn_helix isocitrate lyase regulation JE55_RS05975 SM00955 JE55_RS05975 JE55_RS06010 SM00878 Biotin carboxylase C-terminal domain JE55_RS06055 SM00644 JE55_RS06055 JE55_RS06070 SM00382 ATPases associated with a variety of cellular activities JE55_RS06070 SM00962 SRP54-type protein, GTPase domain JE55_RS06070 SM00963 SRP54-type protein, helical bundle domain JE55_RS06100 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase JE55_RS06200 SM01091 Transporter associated domain JE55_RS06205 SM00382 ATPases associated with a variety of cellular activities JE55_RS06240 SM00382 ATPases associated with a variety of cellular activities JE55_RS06250 SM00957 SecA DEAD-like domain JE55_RS06250 SM00958 SecA preprotein cross-linking domain JE55_RS06275 SM00864 Tubulin/FtsZ family, GTPase domain JE55_RS06275 SM00865 Tubulin/FtsZ family, C-terminal domain JE55_RS06280 SM00842 Cell division protein FtsA JE55_RS06365 SM00926 Molybdopterin oxidoreductase Fe4S4 domain JE55_RS06425 SM00925 MltA specific insert domain JE55_RS06470 SM01118 JE55_RS06470 JE55_RS06475 SM00986 Uracil DNA glycosylase superfamily JE55_RS06475 SM00987 UreE urease accessory protein, C-terminal domain JE55_RS06485 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JE55_RS06530 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS06560 SM00382 ATPases associated with a variety of cellular activities JE55_RS06605 SM00937 JE55_RS06605 JE55_RS06635 SM00357 Cold shock protein domain JE55_RS06685 SM00769 Water Stress and Hypersensitive response JE55_RS06710 SM00382 ATPases associated with a variety of cellular activities JE55_RS06750 SM00382 ATPases associated with a variety of cellular activities JE55_RS06750 SM01086 C-terminal, D2-small domain, of ClpB protein JE55_RS06825 SM00506 Appr-1"-p processing enzyme JE55_RS06930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JE55_RS07030 SM00382 ATPases associated with a variety of cellular activities JE55_RS07060 SM00382 ATPases associated with a variety of cellular activities JE55_RS07085 SM00382 ATPases associated with a variety of cellular activities JE55_RS07115 SM01321 JE55_RS07115 JE55_RS07130 SM00382 ATPases associated with a variety of cellular activities JE55_RS07150 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JE55_RS07165 SM00965 Secretin and TonB N terminus short domain JE55_RS07190 SM01219 JE55_RS07190 JE55_RS07235 SM01004 Delta-aminolevulinic acid dehydratase JE55_RS07255 SM00662 RNA polymerases D JE55_RS07260 SM00363 S4 RNA-binding domain JE55_RS07260 SM01390 JE55_RS07260 JE55_RS07280 SM00316 Ribosomal protein S1-like RNA-binding domain JE55_RS07335 SM01374 JE55_RS07335 JE55_RS07355 SM00322 K homology RNA-binding domain JE55_RS07370 SM01382 JE55_RS07370 JE55_RS07370 SM01383 JE55_RS07370 JE55_RS07390 SM01403 JE55_RS07390 JE55_RS07400 SM00838 Elongation factor G C-terminus JE55_RS07400 SM00889 Elongation factor G, domain IV JE55_RS07415 SM00341 Helicase and RNase D C-terminal JE55_RS07415 SM00487 DEAD-like helicases superfamily JE55_RS07415 SM00490 helicase superfamily c-terminal domain JE55_RS07415 SM00956 JE55_RS07415 JE55_RS07425 SM00663 RNA polymerase I subunit A N-terminus JE55_RS07450 SM00649 Ribosomal protein L11/L12 JE55_RS07455 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. JE55_RS07455 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. JE55_RS07560 SM00344 helix_turn_helix ASNC type JE55_RS07580 SM00919 Malic enzyme, NAD binding domain JE55_RS07580 SM01274 JE55_RS07580 JE55_RS07600 SM00859 Semialdehyde dehydrogenase, NAD binding domain JE55_RS07690 SM00974 JE55_RS07690 JE55_RS07785 SM00749 bacterial OsmY and nodulation domain JE55_RS07810 SM00849 Metallo-beta-lactamase superfamily JE55_RS07820 SM00344 helix_turn_helix ASNC type JE55_RS07830 SM00528 Domain in histone-like proteins of HNS family JE55_RS07875 SM00996 S-adenosyl-L-homocysteine hydrolase JE55_RS07875 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JE55_RS07890 SM00382 ATPases associated with a variety of cellular activities JE55_RS07890 SM00962 SRP54-type protein, GTPase domain JE55_RS07925 SM00448 cheY-homologous receiver domain JE55_RS07930 SM00448 cheY-homologous receiver domain JE55_RS07940 SM00138 Methyltransferase, chemotaxis proteins JE55_RS07945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS07945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS07950 SM00260 Two component signalling adaptor domain JE55_RS07955 SM00073 Histidine Phosphotransfer domain JE55_RS07955 SM00260 Two component signalling adaptor domain JE55_RS07955 SM00387 Histidine kinase-like ATPases JE55_RS07955 SM01231 JE55_RS07955 JE55_RS07960 SM00448 cheY-homologous receiver domain JE55_RS07990 SM00528 Domain in histone-like proteins of HNS family JE55_RS08035 SM00028 Tetratricopeptide repeats JE55_RS08060 SM00822 JE55_RS08060 JE55_RS08130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS08130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS08260 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS08325 SM00422 helix_turn_helix, mercury resistance JE55_RS08345 SM00062 Bacterial periplasmic substrate-binding proteins JE55_RS08385 SM00487 DEAD-like helicases superfamily JE55_RS08385 SM00490 helicase superfamily c-terminal domain JE55_RS08395 SM00062 Bacterial periplasmic substrate-binding proteins JE55_RS08420 SM00382 ATPases associated with a variety of cellular activities JE55_RS08465 SM00470 ParB-like nuclease domain JE55_RS08480 SM01228 JE55_RS08480 JE55_RS08485 SM00382 ATPases associated with a variety of cellular activities JE55_RS08490 SM00382 ATPases associated with a variety of cellular activities JE55_RS08525 SM00382 ATPases associated with a variety of cellular activities JE55_RS08530 SM00382 ATPases associated with a variety of cellular activities JE55_RS08550 SM01118 JE55_RS08550 JE55_RS08555 SM00344 helix_turn_helix ASNC type JE55_RS08575 SM00448 cheY-homologous receiver domain JE55_RS08575 SM00862 Transcriptional regulatory protein, C terminal JE55_RS08580 SM00387 Histidine kinase-like ATPases JE55_RS08580 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS08585 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain JE55_RS08605 SM00347 helix_turn_helix multiple antibiotic resistance protein JE55_RS08625 SM00411 bacterial (prokaryotic) histone like domain JE55_RS08630 SM00833 Cobalamin synthesis protein cobW C-terminal domain JE55_RS08645 SM00382 ATPases associated with a variety of cellular activities JE55_RS08710 SM00347 helix_turn_helix multiple antibiotic resistance protein JE55_RS08770 SM00422 helix_turn_helix, mercury resistance JE55_RS08790 SM00382 ATPases associated with a variety of cellular activities JE55_RS08800 SM00387 Histidine kinase-like ATPases JE55_RS08800 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS08805 SM00448 cheY-homologous receiver domain JE55_RS08805 SM00862 Transcriptional regulatory protein, C terminal JE55_RS08830 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS08835 SM00382 ATPases associated with a variety of cellular activities JE55_RS08840 SM00382 ATPases associated with a variety of cellular activities JE55_RS08905 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS08965 SM01060 JE55_RS08965 JE55_RS08975 SM00387 Histidine kinase-like ATPases JE55_RS08975 SM00433 TopoisomeraseII JE55_RS08980 SM00480 DNA polymerase III beta subunit JE55_RS08985 SM00382 ATPases associated with a variety of cellular activities JE55_RS08985 SM00760 Bacterial dnaA protein helix-turn-helix domain JE55_RS09000 SM01234 JE55_RS09000 JE55_RS09050 SM00857 Resolvase, N terminal domain JE55_RS09090 SM01322 JE55_RS09090 JE55_RS09100 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS09105 SM00478 endonuclease III JE55_RS09105 SM01009 AlkA N-terminal domain JE55_RS09200 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain JE55_RS09200 SM00437 Bacterial DNA topoisomerase I DNA-binding domain JE55_RS09200 SM00493 JE55_RS09200 JE55_RS09250 SM00091 PAS domain JE55_RS09250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS09250 SM00387 Histidine kinase-like ATPases JE55_RS09250 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS09255 SM00448 cheY-homologous receiver domain JE55_RS09285 SM00671 Sel1-like repeats. JE55_RS09325 SM00845 GatB domain JE55_RS09345 SM00829 Enoylreductase JE55_RS09350 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS09395 SM00387 Histidine kinase-like ATPases JE55_RS09395 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS09400 SM00448 cheY-homologous receiver domain JE55_RS09405 SM00382 ATPases associated with a variety of cellular activities JE55_RS09405 SM01086 C-terminal, D2-small domain, of ClpB protein JE55_RS09420 SM00833 Cobalamin synthesis protein cobW C-terminal domain JE55_RS09425 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase JE55_RS09535 SM00382 ATPases associated with a variety of cellular activities JE55_RS09595 SM00421 helix_turn_helix, Lux Regulon JE55_RS09595 SM00448 cheY-homologous receiver domain JE55_RS09600 SM00387 Histidine kinase-like ATPases JE55_RS09630 SM00382 ATPases associated with a variety of cellular activities JE55_RS09665 SM00382 ATPases associated with a variety of cellular activities JE55_RS09670 SM00382 ATPases associated with a variety of cellular activities JE55_RS09700 SM00797 Allophanate hydrolase subunit 2 JE55_RS09705 SM00796 Allophanate hydrolase subunit 1 JE55_RS09755 SM00858 JE55_RS09755 JE55_RS09800 SM00047 Lysozyme subfamily 2 JE55_RS09945 SM00746 metallochaperone-like domain JE55_RS10015 SM00905 Dihydroneopterin aldolase JE55_RS10050 SM00354 helix_turn _helix lactose operon repressor JE55_RS10055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS10095 SM00344 helix_turn_helix ASNC type JE55_RS10150 SM00344 helix_turn_helix ASNC type JE55_RS10180 SM00612 JE55_RS10180 JE55_RS10190 SM01130 JE55_RS10190 JE55_RS10255 SM00052 Putative diguanylate phosphodiesterase JE55_RS10265 SM00098 Alkaline phosphatase homologues JE55_RS10270 SM00098 Alkaline phosphatase homologues JE55_RS10290 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS10290 SM00876 Biotin and Thiamin Synthesis associated domain JE55_RS10330 SM00947 Carbonic anhydrase JE55_RS10340 SM00849 Metallo-beta-lactamase superfamily JE55_RS10345 SM00382 ATPases associated with a variety of cellular activities JE55_RS10355 SM00347 helix_turn_helix multiple antibiotic resistance protein JE55_RS10380 SM00836 DALR anticodon binding domain JE55_RS10380 SM01016 Arginyl tRNA synthetase N terminal dom JE55_RS10390 SM01018 B12 binding domain JE55_RS10410 SM00346 helix_turn_helix isocitrate lyase regulation JE55_RS10460 SM00671 Sel1-like repeats. JE55_RS10475 SM00382 ATPases associated with a variety of cellular activities JE55_RS10505 SM00936 Penicillin-binding protein 5, C-terminal domain JE55_RS10535 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS10600 SM00387 Histidine kinase-like ATPases JE55_RS10600 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS10605 SM00382 ATPases associated with a variety of cellular activities JE55_RS10605 SM00448 cheY-homologous receiver domain JE55_RS10635 SM00382 ATPases associated with a variety of cellular activities JE55_RS10645 SM00938 Nitrogen regulatory protein P-II JE55_RS10685 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JE55_RS10685 SM00245 tail specific protease JE55_RS10690 SM00855 Phosphoglycerate mutase family JE55_RS10695 SM00450 Rhodanese Homology Domain JE55_RS10715 SM00506 Appr-1"-p processing enzyme JE55_RS10805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS10805 SM01049 JE55_RS10805 JE55_RS10830 SM00382 ATPases associated with a variety of cellular activities JE55_RS10845 SM00481 DNA polymerase alpha chain like domain JE55_RS10880 SM00382 ATPases associated with a variety of cellular activities JE55_RS10960 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS10960 SM00866 JE55_RS10960 JE55_RS10985 SM01081 Putative carbohydrate binding domain JE55_RS11050 SM00926 Molybdopterin oxidoreductase Fe4S4 domain JE55_RS11075 SM00382 ATPases associated with a variety of cellular activities JE55_RS11075 SM00962 SRP54-type protein, GTPase domain JE55_RS11075 SM00963 SRP54-type protein, helical bundle domain JE55_RS11110 SM01400 JE55_RS11110 JE55_RS11130 SM00028 Tetratricopeptide repeats JE55_RS11135 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain JE55_RS11135 SM01232 JE55_RS11135 JE55_RS11140 SM00478 endonuclease III JE55_RS11145 SM00464 Found in ATP-dependent protease La (LON) JE55_RS11175 SM00382 ATPases associated with a variety of cellular activities JE55_RS11195 SM00116 Domain in cystathionine beta-synthase and other proteins. JE55_RS11345 SM00240 Forkhead associated domain JE55_RS11350 SM00220 Serine/Threonine protein kinases, catalytic domain JE55_RS11370 SM01007 Class II Aldolase and Adducin N-terminal domain JE55_RS11375 SM00052 Putative diguanylate phosphodiesterase JE55_RS11375 SM00267 diguanylate cyclase JE55_RS11410 SM00382 ATPases associated with a variety of cellular activities JE55_RS11450 SM00419 helix_turn_helix, cAMP Regulatory protein JE55_RS11480 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. JE55_RS11500 SM00347 helix_turn_helix multiple antibiotic resistance protein JE55_RS11510 SM01119 JE55_RS11510 JE55_RS11565 SM00978 JE55_RS11565 JE55_RS11585 SM00834 Putative regulatory protein JE55_RS11605 SM00155 Phospholipase D. Active site motifs. JE55_RS11650 SM00382 ATPases associated with a variety of cellular activities JE55_RS11685 SM00650 Ribosomal RNA adenine dimethylases JE55_RS11705 SM00563 Phosphate acyltransferases JE55_RS11715 SM00836 DALR anticodon binding domain JE55_RS11730 SM01091 Transporter associated domain JE55_RS11755 SM00729 Elongator protein 3, MiaB family, Radical SAM JE55_RS11770 SM00530 Helix-turn-helix XRE-family like proteins JE55_RS11840 SM00420 helix_turn_helix, Deoxyribose operon repressor JE55_RS11840 SM01134 JE55_RS11840 JE55_RS11860 SM00487 DEAD-like helicases superfamily JE55_RS11860 SM00490 helicase superfamily c-terminal domain JE55_RS11880 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain JE55_RS11900 SM00387 Histidine kinase-like ATPases JE55_RS11905 SM00448 cheY-homologous receiver domain JE55_RS11920 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) JE55_RS11920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS11945 SM00450 Rhodanese Homology Domain JE55_RS11960 SM00382 ATPases associated with a variety of cellular activities JE55_RS12035 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain JE55_RS12075 SM00387 Histidine kinase-like ATPases JE55_RS12075 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS12075 SM00448 cheY-homologous receiver domain JE55_RS12085 SM00448 cheY-homologous receiver domain JE55_RS12155 SM00387 Histidine kinase-like ATPases JE55_RS12155 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS12160 SM00448 cheY-homologous receiver domain JE55_RS12160 SM00862 Transcriptional regulatory protein, C terminal JE55_RS12165 SM00382 ATPases associated with a variety of cellular activities JE55_RS12185 SM00881 CoA binding domain JE55_RS12290 SM01001 AIR carboxylase JE55_RS12320 SM00448 cheY-homologous receiver domain JE55_RS12320 SM00862 Transcriptional regulatory protein, C terminal JE55_RS12325 SM00387 Histidine kinase-like ATPases JE55_RS12325 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS12335 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JE55_RS12390 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS12395 SM00829 Enoylreductase JE55_RS12410 SM00382 ATPases associated with a variety of cellular activities JE55_RS12425 SM00822 JE55_RS12425 JE55_RS12460 SM00382 ATPases associated with a variety of cellular activities JE55_RS12545 SM00344 helix_turn_helix ASNC type JE55_RS12550 SM00903 Flavin reductase like domain JE55_RS12605 SM00646 JE55_RS12605 JE55_RS12640 SM01207 JE55_RS12640 JE55_RS12730 SM00100 Cyclic nucleotide-monophosphate binding domain JE55_RS12730 SM00419 helix_turn_helix, cAMP Regulatory protein JE55_RS12750 SM00052 Putative diguanylate phosphodiesterase JE55_RS12775 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS12775 SM00866 JE55_RS12775 JE55_RS12800 SM00838 Elongation factor G C-terminus JE55_RS12800 SM00889 Elongation factor G, domain IV JE55_RS12815 SM01329 JE55_RS12815 JE55_RS12825 SM00357 Cold shock protein domain JE55_RS12835 SM00382 ATPases associated with a variety of cellular activities JE55_RS12835 SM01086 C-terminal, D2-small domain, of ClpB protein JE55_RS12875 SM00904 Riboflavin kinase JE55_RS12960 SM00382 ATPases associated with a variety of cellular activities JE55_RS12965 SM00382 ATPases associated with a variety of cellular activities JE55_RS13030 SM01130 JE55_RS13030 JE55_RS13035 SM01007 Class II Aldolase and Adducin N-terminal domain JE55_RS13040 SM00530 Helix-turn-helix XRE-family like proteins JE55_RS13180 SM00382 ATPases associated with a variety of cellular activities JE55_RS13195 SM00855 Phosphoglycerate mutase family JE55_RS13335 SM00972 Spore Coat Protein U domain JE55_RS13340 SM00972 Spore Coat Protein U domain JE55_RS13345 SM00530 Helix-turn-helix XRE-family like proteins JE55_RS13380 SM00028 Tetratricopeptide repeats JE55_RS13425 SM00938 Nitrogen regulatory protein P-II JE55_RS13435 SM00382 ATPases associated with a variety of cellular activities JE55_RS13450 SM00062 Bacterial periplasmic substrate-binding proteins JE55_RS13470 SM00448 cheY-homologous receiver domain JE55_RS13470 SM00862 Transcriptional regulatory protein, C terminal JE55_RS13475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS13475 SM00387 Histidine kinase-like ATPases JE55_RS13475 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS13490 SM00382 ATPases associated with a variety of cellular activities JE55_RS13570 SM00912 haemagglutination activity domain JE55_RS13620 SM00316 Ribosomal protein S1-like RNA-binding domain JE55_RS13650 SM00382 ATPases associated with a variety of cellular activities JE55_RS13655 SM00387 Histidine kinase-like ATPases JE55_RS13655 SM00433 TopoisomeraseII JE55_RS13660 SM00434 DNA Topoisomerase IV JE55_RS13715 SM00052 Putative diguanylate phosphodiesterase JE55_RS13715 SM00267 diguanylate cyclase JE55_RS13745 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS13750 SM00387 Histidine kinase-like ATPases JE55_RS13760 SM00986 Uracil DNA glycosylase superfamily JE55_RS13760 SM00987 UreE urease accessory protein, C-terminal domain JE55_RS13800 SM00382 ATPases associated with a variety of cellular activities JE55_RS13825 SM00478 endonuclease III JE55_RS13855 SM00382 ATPases associated with a variety of cellular activities JE55_RS13855 SM00843 JE55_RS13855 JE55_RS13885 SM00487 DEAD-like helicases superfamily JE55_RS13885 SM00490 helicase superfamily c-terminal domain JE55_RS13895 SM00450 Rhodanese Homology Domain JE55_RS13905 SM00481 DNA polymerase alpha chain like domain JE55_RS13910 SM00382 ATPases associated with a variety of cellular activities JE55_RS14050 SM00507 HNH nucleases JE55_RS14115 SM00316 Ribosomal protein S1-like RNA-binding domain JE55_RS14145 SM01209 JE55_RS14145 JE55_RS14145 SM01210 JE55_RS14145 JE55_RS14165 SM00851 MGS-like domain JE55_RS14170 SM00829 Enoylreductase JE55_RS14200 SM00387 Histidine kinase-like ATPases JE55_RS14200 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS14205 SM00448 cheY-homologous receiver domain JE55_RS14205 SM00862 Transcriptional regulatory protein, C terminal JE55_RS14235 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain JE55_RS14335 SM00917 LeuA allosteric (dimerisation) domain JE55_RS14345 SM00947 Carbonic anhydrase JE55_RS14365 SM01387 JE55_RS14365 JE55_RS14370 SM00316 Ribosomal protein S1-like RNA-binding domain JE55_RS14370 SM00322 K homology RNA-binding domain JE55_RS14375 SM00829 Enoylreductase JE55_RS14420 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JE55_RS14425 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JE55_RS14500 SM00710 Parallel beta-helix repeats JE55_RS14520 SM00855 Phosphoglycerate mutase family JE55_RS14550 SM00631 JE55_RS14550 JE55_RS14565 SM00421 helix_turn_helix, Lux Regulon JE55_RS14610 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS14625 SM00062 Bacterial periplasmic substrate-binding proteins JE55_RS14680 SM00052 Putative diguanylate phosphodiesterase JE55_RS14680 SM00267 diguanylate cyclase JE55_RS14715 SM00346 helix_turn_helix isocitrate lyase regulation JE55_RS14745 SM00344 helix_turn_helix ASNC type JE55_RS14750 SM00382 ATPases associated with a variety of cellular activities JE55_RS14805 SM00052 Putative diguanylate phosphodiesterase JE55_RS14895 SM00382 ATPases associated with a variety of cellular activities JE55_RS14925 SM00354 helix_turn _helix lactose operon repressor JE55_RS14945 SM00267 diguanylate cyclase JE55_RS14965 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS14970 SM00344 helix_turn_helix ASNC type JE55_RS15020 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS15115 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. JE55_RS15155 SM00479 JE55_RS15155 JE55_RS15170 SM00849 Metallo-beta-lactamase superfamily JE55_RS15175 SM00257 Lysin motif JE55_RS15190 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS15195 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain JE55_RS15205 SM00851 MGS-like domain JE55_RS15205 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JE55_RS15220 SM01103 JE55_RS15220 JE55_RS15230 SM00382 ATPases associated with a variety of cellular activities JE55_RS15260 SM00382 ATPases associated with a variety of cellular activities JE55_RS15270 SM00448 cheY-homologous receiver domain JE55_RS15270 SM00862 Transcriptional regulatory protein, C terminal JE55_RS15275 SM00387 Histidine kinase-like ATPases JE55_RS15275 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS15325 SM00855 Phosphoglycerate mutase family JE55_RS15365 SM00257 Lysin motif JE55_RS15420 SM00422 helix_turn_helix, mercury resistance JE55_RS15425 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS15440 SM00642 Alpha-amylase domain JE55_RS15450 SM00642 Alpha-amylase domain JE55_RS15455 SM00642 Alpha-amylase domain JE55_RS15460 SM00642 Alpha-amylase domain JE55_RS15465 SM00642 Alpha-amylase domain JE55_RS15470 SM00642 Alpha-amylase domain JE55_RS15480 SM00060 Fibronectin type 3 domain JE55_RS15510 SM00448 cheY-homologous receiver domain JE55_RS15510 SM00862 Transcriptional regulatory protein, C terminal JE55_RS15535 SM00448 cheY-homologous receiver domain JE55_RS15535 SM00862 Transcriptional regulatory protein, C terminal JE55_RS15555 SM00028 Tetratricopeptide repeats JE55_RS15560 SM00528 Domain in histone-like proteins of HNS family JE55_RS15580 SM00458 Ricin-type beta-trefoil JE55_RS15580 SM00612 JE55_RS15580 JE55_RS15730 SM00972 Spore Coat Protein U domain JE55_RS15735 SM00972 Spore Coat Protein U domain JE55_RS15740 SM00972 Spore Coat Protein U domain JE55_RS15755 SM00972 Spore Coat Protein U domain JE55_RS15760 SM00387 Histidine kinase-like ATPases JE55_RS15760 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS15760 SM00448 cheY-homologous receiver domain JE55_RS15765 SM00421 helix_turn_helix, Lux Regulon JE55_RS15765 SM00448 cheY-homologous receiver domain JE55_RS15840 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain JE55_RS15855 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JE55_RS15890 SM00382 ATPases associated with a variety of cellular activities JE55_RS15895 SM00382 ATPases associated with a variety of cellular activities JE55_RS15920 SM00382 ATPases associated with a variety of cellular activities JE55_RS15960 SM00448 cheY-homologous receiver domain JE55_RS15960 SM00862 Transcriptional regulatory protein, C terminal JE55_RS15970 SM00387 Histidine kinase-like ATPases JE55_RS15970 SM01080 JE55_RS15970 JE55_RS16005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS16075 SM00116 Domain in cystathionine beta-synthase and other proteins. JE55_RS16080 SM00563 Phosphate acyltransferases JE55_RS16105 SM00822 JE55_RS16105 JE55_RS16125 SM00421 helix_turn_helix, Lux Regulon JE55_RS16130 SM00882 Coenzyme A transferase JE55_RS16135 SM00882 Coenzyme A transferase JE55_RS16175 SM00954 Region found in RelA / SpoT proteins JE55_RS16185 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain JE55_RS16210 SM00873 B3/4 domain JE55_RS16210 SM00874 tRNA synthetase B5 domain JE55_RS16210 SM00896 Ferredoxin-fold anticodon binding domain JE55_RS16215 SM00411 bacterial (prokaryotic) histone like domain JE55_RS16220 SM00422 helix_turn_helix, mercury resistance JE55_RS16300 SM00363 S4 RNA-binding domain JE55_RS16310 SM00316 Ribosomal protein S1-like RNA-binding domain JE55_RS16310 SM00322 K homology RNA-binding domain JE55_RS16345 SM00347 helix_turn_helix multiple antibiotic resistance protein JE55_RS16365 SM00861 Transketolase, pyrimidine binding domain JE55_RS16430 SM00858 JE55_RS16430 JE55_RS16460 SM00028 Tetratricopeptide repeats JE55_RS16475 SM00382 ATPases associated with a variety of cellular activities JE55_RS16540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS16540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS16555 SM00316 Ribosomal protein S1-like RNA-binding domain JE55_RS16555 SM00357 Cold shock protein domain JE55_RS16555 SM00955 JE55_RS16555 JE55_RS16560 SM00967 RNA 2'-O ribose methyltransferase substrate binding JE55_RS16570 SM00644 JE55_RS16570 JE55_RS16580 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS16580 SM00895 JE55_RS16580 JE55_RS16595 SM00062 Bacterial periplasmic substrate-binding proteins JE55_RS16595 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. JE55_RS16655 SM00382 ATPases associated with a variety of cellular activities JE55_RS16730 SM00382 ATPases associated with a variety of cellular activities JE55_RS16770 SM00382 ATPases associated with a variety of cellular activities JE55_RS16785 SM00382 ATPases associated with a variety of cellular activities JE55_RS16795 SM00354 helix_turn _helix lactose operon repressor JE55_RS16805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS16805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS16810 SM00763 PrkA AAA domain JE55_RS16840 SM00382 ATPases associated with a variety of cellular activities JE55_RS16910 SM00062 Bacterial periplasmic substrate-binding proteins JE55_RS16980 SM00382 ATPases associated with a variety of cellular activities JE55_RS16995 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS17005 SM00382 ATPases associated with a variety of cellular activities JE55_RS17025 SM00822 JE55_RS17025 JE55_RS17040 SM00923 MbtH-like protein JE55_RS17050 SM00382 ATPases associated with a variety of cellular activities JE55_RS17080 SM00382 ATPases associated with a variety of cellular activities JE55_RS17085 SM00823 Phosphopantetheine attachment site JE55_RS17140 SM00833 Cobalamin synthesis protein cobW C-terminal domain JE55_RS17155 SM00382 ATPases associated with a variety of cellular activities JE55_RS17175 SM00495 Chitin-binding domain type 3 JE55_RS17235 SM00347 helix_turn_helix multiple antibiotic resistance protein JE55_RS17300 SM00382 ATPases associated with a variety of cellular activities JE55_RS17340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS17345 SM00260 Two component signalling adaptor domain JE55_RS17355 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS17370 SM00823 Phosphopantetheine attachment site JE55_RS17370 SM00824 Thioesterase JE55_RS17375 SM00923 MbtH-like protein JE55_RS17380 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. JE55_RS17445 SM00823 Phosphopantetheine attachment site JE55_RS17555 SM00448 cheY-homologous receiver domain JE55_RS17555 SM00862 Transcriptional regulatory protein, C terminal JE55_RS17575 SM00028 Tetratricopeptide repeats JE55_RS17585 SM00382 ATPases associated with a variety of cellular activities JE55_RS17600 SM00191 Integrin alpha (beta-propellor repeats). JE55_RS17635 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS17635 SM00895 JE55_RS17635 JE55_RS17640 SM00382 ATPases associated with a variety of cellular activities JE55_RS17675 SM00903 Flavin reductase like domain JE55_RS17700 SM00345 helix_turn_helix gluconate operon transcriptional repressor JE55_RS17700 SM00895 JE55_RS17700 JE55_RS17725 SM00528 Domain in histone-like proteins of HNS family JE55_RS17735 SM00052 Putative diguanylate phosphodiesterase JE55_RS17740 SM00387 Histidine kinase-like ATPases JE55_RS17740 SM00388 His Kinase A (phosphoacceptor) domain JE55_RS17740 SM00448 cheY-homologous receiver domain JE55_RS17745 SM00421 helix_turn_helix, Lux Regulon JE55_RS17745 SM00448 cheY-homologous receiver domain JE55_RS17875 SM01120 JE55_RS17875 JE55_RS17885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JE55_RS17885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JE55_RS17895 SM00382 ATPases associated with a variety of cellular activities JE55_RS17915 SM00710 Parallel beta-helix repeats JE55_RS17915 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses JE55_RS17920 SM00382 ATPases associated with a variety of cellular activities JE55_RS17950 SM00900 JE55_RS17950 JE55_RS18020 SM00344 helix_turn_helix ASNC type JE55_RS18065 SM00354 helix_turn _helix lactose operon repressor JE55_RS18105 SM00116 Domain in cystathionine beta-synthase and other proteins. JE55_RS18135 SM00422 helix_turn_helix, mercury resistance JE55_RS18155 SM00091 PAS domain JE55_RS18155 SM00382 ATPases associated with a variety of cellular activities JE55_RS18160 SM00849 Metallo-beta-lactamase superfamily JE55_RS18185 SM00382 ATPases associated with a variety of cellular activities JE55_RS18225 SM00382 ATPases associated with a variety of cellular activities JE55_RS18240 SM00382 ATPases associated with a variety of cellular activities JE55_RS18555 SM00382 ATPases associated with a variety of cellular activities JE55_RS18575 SM00852 Probable molybdopterin binding domain JE55_RS18795 SM01211 JE55_RS18795 JE55_RS19395 SM00532 Ligase N family JE55_RS20345 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) JE55_RS20345 SM00091 PAS domain JE55_RS22855 SM00822 JE55_RS22855 JE55_RS23375 SM00981 JE55_RS23375 JE55_RS26275 SM00342 helix_turn_helix, arabinose operon control protein JE55_RS27050 SM00797 Allophanate hydrolase subunit 2 JE55_RS28130 SM00382 ATPases associated with a variety of cellular activities JE55_RS28515 SM00267 diguanylate cyclase JE55_RS29355 SM01001 AIR carboxylase JE55_RS30635 SM00052 Putative diguanylate phosphodiesterase JE55_RS30635 SM00267 diguanylate cyclase JE55_RS31420 SM00421 helix_turn_helix, Lux Regulon