locus-tag	class	description
EYA88_RS00020	COG1396	sequence-specific DNA binding
EYA88_RS00045	COG1309	transcriptional regulator
EYA88_RS00070	COG0473	3-isopropylmalate dehydrogenase activity
EYA88_RS00075	COG0583	DNA-binding transcription factor activity
EYA88_RS00090	COG0625	glutathione transferase activity
EYA88_RS00115	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS00125	COG0671	phosphoesterase, PA-phosphatase related
EYA88_RS00185	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
EYA88_RS00200	COG0583	DNA-binding transcription factor activity
EYA88_RS00205	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EYA88_RS00210	COG0589	response to stress
EYA88_RS00265	COG1045	serine acetyltransferase
EYA88_RS00275	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS00280	COG0302	gtp cyclohydrolase
EYA88_RS00300	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
EYA88_RS00305	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
EYA88_RS00310	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
EYA88_RS00315	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EYA88_RS00385	COG1595	DNA-templated transcription, initiation
EYA88_RS00390	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
EYA88_RS00425	COG2916	Histone family protein nucleoid-structuring protein H-NS
EYA88_RS00440	COG0477	Major facilitator Superfamily
EYA88_RS00525	COG2826	transposase and inactivated derivatives, IS30 family
EYA88_RS00560	COG1176	ABC-type spermidine putrescine transport system, permease component I
EYA88_RS00565	COG1177	transmembrane transport
EYA88_RS00570	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
EYA88_RS00605	COG0432	Pfam Uncharacterised protein family UPF0047
EYA88_RS00645	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EYA88_RS00680	COG5295	Hep Hag repeat protein
EYA88_RS00705	COG3121	Chaperone
EYA88_RS00710	COG3188	usher protein
EYA88_RS00725	COG2885	chlorophyll binding
EYA88_RS00865	COG2271	Major facilitator Superfamily
EYA88_RS00870	COG1929	Belongs to the glycerate kinase type-1 family
EYA88_RS00875	COG0469	pyruvate kinase activity
EYA88_RS00880	COG3835	regulator
EYA88_RS00895	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS00895	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EYA88_RS00895	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS00895	COG3321	synthase
EYA88_RS00895	COG0300	oxidoreductase activity
EYA88_RS00930	COG2203	Gaf domain
EYA88_RS00930	COG3706	GGDEF domain
EYA88_RS00930	COG4251	negative regulation of phosphorylation
EYA88_RS00930	COG5001	Diguanylate cyclase
EYA88_RS00980	COG1879	ABC-type sugar transport system periplasmic component
EYA88_RS00985	COG1172	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS01020	COG0513	Belongs to the DEAD box helicase family
EYA88_RS01035	COG1473	amidohydrolase
EYA88_RS01040	COG0583	DNA-binding transcription factor activity
EYA88_RS01095	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS01125	COG3537	Alpha-1,2-mannosidase
EYA88_RS01155	COG0367	asparagine synthase
EYA88_RS01200	COG2885	chlorophyll binding
EYA88_RS01315	COG0583	DNA-binding transcription factor activity
EYA88_RS01370	COG1984	allophanate hydrolase subunit 2
EYA88_RS01385	COG0511	ligase activity, forming carbon-carbon bonds
EYA88_RS01390	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
EYA88_RS01450	COG0840	transmembrane signaling receptor activity
EYA88_RS01515	COG0535	radical SAM domain protein
EYA88_RS01525	COG0840	transmembrane signaling receptor activity
EYA88_RS01550	COG1285	pathogenesis
EYA88_RS01640	COG0346	lactoylglutathione lyase activity
EYA88_RS01650	COG1562	ergosterol biosynthetic process
EYA88_RS01655	COG0583	DNA-binding transcription factor activity
EYA88_RS01675	COG1294	oxidase, subunit
EYA88_RS01680	COG1271	oxidase subunit
EYA88_RS01685	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
EYA88_RS01705	COG2860	membrane
EYA88_RS01710	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
EYA88_RS01720	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
EYA88_RS01730	COG4558	Periplasmic binding protein
EYA88_RS01735	COG3720	iron ion transport
EYA88_RS01765	COG3842	ATPase activity
EYA88_RS01770	COG1840	ABC-type Fe3 transport system, periplasmic component
EYA88_RS01785	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS01795	COG0698	ribose 5-phosphate isomerase
EYA88_RS01800	COG1129	ABC transporter
EYA88_RS01805	COG1172	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS01810	COG1879	ABC-type sugar transport system periplasmic component
EYA88_RS01815	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS01820	COG1063	alcohol dehydrogenase
EYA88_RS01825	COG2376	Dihydroxyacetone kinase
EYA88_RS01860	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS01890	COG2755	lipolytic protein G-D-S-L family
EYA88_RS01890	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
EYA88_RS01905	COG0583	DNA-binding transcription factor activity
EYA88_RS01910	COG1473	amidohydrolase
EYA88_RS01930	COG1309	transcriptional regulator
EYA88_RS01935	COG1414	Transcriptional regulator
EYA88_RS01945	COG0183	Belongs to the thiolase family
EYA88_RS01960	COG0840	transmembrane signaling receptor activity
EYA88_RS02000	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
EYA88_RS02010	COG1288	antiporter activity
EYA88_RS02015	COG1414	Transcriptional regulator
EYA88_RS02050	COG0709	Synthesizes selenophosphate from selenide and ATP
EYA88_RS02090	COG0583	DNA-binding transcription factor activity
EYA88_RS02095	COG0657	acetylesterase activity
EYA88_RS02100	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EYA88_RS02115	COG1301	dicarboxylic acid transport
EYA88_RS02160	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS02165	COG0019	diaminopimelate decarboxylase activity
EYA88_RS02175	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
EYA88_RS02180	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EYA88_RS02180	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
EYA88_RS02180	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EYA88_RS02180	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS02180	COG3321	synthase
EYA88_RS02190	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
EYA88_RS02230	COG2197	response regulator
EYA88_RS02250	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
EYA88_RS02255	COG2011	ABC-type metal ion transport system permease component
EYA88_RS02285	COG2186	Transcriptional regulator
EYA88_RS02290	COG0247	lactate metabolic process
EYA88_RS02295	COG1139	Iron-sulfur cluster binding protein
EYA88_RS02300	COG1556	Lactate utilization protein
EYA88_RS02305	COG1620	l-lactate permease
EYA88_RS02315	COG2259	Doxx family
EYA88_RS02340	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
EYA88_RS02350	COG0531	amino acid
EYA88_RS02360	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EYA88_RS02375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EYA88_RS02400	COG3547	Transposase (IS116 IS110 IS902 family)
EYA88_RS02415	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
EYA88_RS02420	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
EYA88_RS02425	COG2271	Major facilitator Superfamily
EYA88_RS02450	COG1176	ABC-type spermidine putrescine transport system, permease component I
EYA88_RS02465	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS02520	COG0789	Transcriptional regulator
EYA88_RS02535	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
EYA88_RS02540	COG0667	Aldo Keto reductase
EYA88_RS02545	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS02560	COG0556	nucleotide-excision repair
EYA88_RS02570	COG4633	Protein conserved in bacteria
EYA88_RS02575	COG0672	)-iron permease
EYA88_RS02585	COG3193	protein, possibly involved in utilization of glycolate and propanediol
EYA88_RS02635	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
EYA88_RS02675	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
EYA88_RS02740	COG2801	Transposase and inactivated derivatives
EYA88_RS02825	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
EYA88_RS02875	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
EYA88_RS02925	COG0583	DNA-binding transcription factor activity
EYA88_RS02930	COG1741	Belongs to the pirin family
EYA88_RS02970	COG2814	Major facilitator Superfamily
EYA88_RS02980	COG0583	DNA-binding transcription factor activity
EYA88_RS02985	COG1335	isochorismatase
EYA88_RS02995	COG1574	metal-dependent hydrolase with the TIM-barrel fold
EYA88_RS03040	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EYA88_RS03050	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EYA88_RS03085	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
EYA88_RS03085	COG1796	DNA polymerase
EYA88_RS03130	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EYA88_RS03135	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EYA88_RS03145	COG1177	transmembrane transport
EYA88_RS03150	COG1176	ABC-type spermidine putrescine transport system, permease component I
EYA88_RS03155	COG3842	ATPase activity
EYA88_RS03170	COG0174	glutamine synthetase
EYA88_RS03175	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
EYA88_RS03190	COG1917	Cupin 2, conserved barrel domain protein
EYA88_RS03190	COG1396	sequence-specific DNA binding
EYA88_RS03195	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS03200	COG0010	Belongs to the arginase family
EYA88_RS03210	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
EYA88_RS03245	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
EYA88_RS03265	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS03295	COG3634	alkyl hydroperoxide reductase activity
EYA88_RS03320	COG0778	Nitroreductase
EYA88_RS03330	COG2308	Evidence 4 Homologs of previously reported genes of
EYA88_RS03360	COG1305	Transglutaminase-like
EYA88_RS03365	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EYA88_RS03385	COG4977	sequence-specific DNA binding
EYA88_RS03395	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
EYA88_RS03400	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
EYA88_RS03400	COG0028	Belongs to the TPP enzyme family
EYA88_RS03565	COG2814	Major facilitator Superfamily
EYA88_RS03600	COG1621	beta-fructofuranosidase activity
EYA88_RS03630	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
EYA88_RS03645	COG0446	pyridine nucleotide-disulphide oxidoreductase
EYA88_RS03645	COG1902	pentaerythritol trinitrate reductase activity
EYA88_RS03650	COG0247	lactate metabolic process
EYA88_RS03650	COG2181	nitrate reductase activity
EYA88_RS03655	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
EYA88_RS03675	COG2113	Glycine betaine
EYA88_RS03690	COG0583	DNA-binding transcription factor activity
EYA88_RS03695	COG3119	arylsulfatase activity
EYA88_RS03730	COG3246	L-lysine catabolic process to acetate
EYA88_RS03735	COG1250	3-hydroxyacyl-CoA dehydrogenase
EYA88_RS03745	COG0657	acetylesterase activity
EYA88_RS03840	COG1021	2,3-dihydroxybenzoate-AMP ligase
EYA88_RS03850	COG3433	isochorismatase activity
EYA88_RS03850	COG2226	methyltransferase
EYA88_RS03850	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EYA88_RS03870	COG1132	(ABC) transporter
EYA88_RS03905	COG3284	Transcriptional regulator
EYA88_RS03940	COG2252	PERMEase
EYA88_RS03985	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS03995	COG0028	Belongs to the TPP enzyme family
EYA88_RS03995	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
EYA88_RS04030	COG0330	HflC and HflK could
EYA88_RS04045	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS04050	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
EYA88_RS04065	COG1024	Enoyl-CoA hydratase
EYA88_RS04070	COG1024	Enoyl-CoA hydratase
EYA88_RS04080	COG1538	Outer membrane efflux protein
EYA88_RS04090	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EYA88_RS04120	COG2066	Belongs to the glutaminase family
EYA88_RS04130	COG0745	RESPONSE REGULATOR receiver
EYA88_RS04135	COG2205	protein histidine kinase activity
EYA88_RS04220	COG0642	Histidine kinase
EYA88_RS04250	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
EYA88_RS04390	COG3291	Pkd domain containing protein
EYA88_RS04410	COG3214	Protein conserved in bacteria
EYA88_RS04420	COG0477	Major facilitator Superfamily
EYA88_RS04430	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
EYA88_RS04450	COG1845	cytochrome c oxidase, subunit III
EYA88_RS04510	COG2207	Transcriptional regulator
EYA88_RS04565	COG2205	protein histidine kinase activity
EYA88_RS04570	COG0745	RESPONSE REGULATOR receiver
EYA88_RS04585	COG1846	Transcriptional regulator
EYA88_RS04600	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS04605	COG3384	dioxygenase
EYA88_RS04615	COG3971	2-oxopent-4-enoate hydratase activity
EYA88_RS04625	COG2207	Transcriptional regulator
EYA88_RS04640	COG3842	ATPase activity
EYA88_RS04660	COG0642	Histidine kinase
EYA88_RS04665	COG3217	Mosc domain protein beta barrel domain protein
EYA88_RS04665	COG0633	Ferredoxin
EYA88_RS04675	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS04700	COG1024	Enoyl-CoA hydratase
EYA88_RS04725	COG1262	PFAM Formylglycine-generating sulfatase enzyme
EYA88_RS04730	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
EYA88_RS04765	COG1309	transcriptional regulator
EYA88_RS04785	COG1902	pentaerythritol trinitrate reductase activity
EYA88_RS04800	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
EYA88_RS04810	COG0628	permease
EYA88_RS04825	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS04860	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS04880	COG1215	transferase activity, transferring glycosyl groups
EYA88_RS04980	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS05025	COG0583	DNA-binding transcription factor activity
EYA88_RS05050	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS05065	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
EYA88_RS05070	COG2508	Transcriptional regulator
EYA88_RS05075	COG0402	S-adenosylhomocysteine deaminase activity
EYA88_RS05105	COG0038	chloride channel
EYA88_RS05135	COG2197	response regulator
EYA88_RS05210	COG1024	Enoyl-CoA hydratase
EYA88_RS05215	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS05220	COG3320	Male sterility
EYA88_RS05220	COG1022	Amp-dependent synthetase and ligase
EYA88_RS05225	COG2814	Major facilitator Superfamily
EYA88_RS05240	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS05265	COG1129	ABC transporter
EYA88_RS05270	COG1172	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS05280	COG2721	sulfolactate sulfo-lyase activity
EYA88_RS05295	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS05305	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS05340	COG2916	Histone family protein nucleoid-structuring protein H-NS
EYA88_RS05395	COG1272	protein, Hemolysin III
EYA88_RS05415	COG1522	sequence-specific DNA binding
EYA88_RS05430	COG1448	Aminotransferase
EYA88_RS05490	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EYA88_RS05490	COG4191	Histidine kinase
EYA88_RS05495	COG2201	protein-glutamate methylesterase activity
EYA88_RS05505	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
EYA88_RS05510	COG2373	Large extracellular alpha-helical protein
EYA88_RS05540	COG0495	leucyl-tRNA aminoacylation
EYA88_RS05560	COG2175	clavaminate synthase activity
EYA88_RS05585	COG3291	Pkd domain containing protein
EYA88_RS05600	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EYA88_RS05665	COG0589	response to stress
EYA88_RS05705	COG4221	oxidoreductase activity
EYA88_RS05720	COG1113	amino acid transport
EYA88_RS05735	COG2916	Histone family protein nucleoid-structuring protein H-NS
EYA88_RS05790	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
EYA88_RS05835	COG0583	DNA-binding transcription factor activity
EYA88_RS05845	COG0583	DNA-binding transcription factor activity
EYA88_RS05870	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS05885	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS05890	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
EYA88_RS05895	COG0531	amino acid
EYA88_RS05910	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS05930	COG1902	pentaerythritol trinitrate reductase activity
EYA88_RS05945	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS05950	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
EYA88_RS05965	COG0517	IMP dehydrogenase activity
EYA88_RS05965	COG0516	GMP reductase activity
EYA88_RS05970	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
EYA88_RS05995	COG2197	response regulator
EYA88_RS06000	COG1285	pathogenesis
EYA88_RS06010	COG1408	metallophosphoesterase
EYA88_RS06025	COG1414	Transcriptional regulator
EYA88_RS06030	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS06040	COG2146	nitrite reductase [NAD(P)H] activity
EYA88_RS06070	COG1414	Transcriptional regulator
EYA88_RS06075	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS06080	COG0028	Belongs to the TPP enzyme family
EYA88_RS06090	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS06105	COG0477	Major facilitator Superfamily
EYA88_RS06135	COG0154	amidase activity
EYA88_RS06145	COG1522	sequence-specific DNA binding
EYA88_RS06225	COG0596	Alpha beta hydrolase
EYA88_RS06255	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EYA88_RS06285	COG0840	transmembrane signaling receptor activity
EYA88_RS06305	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
EYA88_RS06310	COG0596	Alpha beta hydrolase
EYA88_RS06360	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS06400	COG0583	DNA-binding transcription factor activity
EYA88_RS06425	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
EYA88_RS06430	COG0601	transmembrane transport
EYA88_RS06440	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
EYA88_RS06475	COG3209	COG3209 Rhs family protein
EYA88_RS06520	COG2140	Oxalate decarboxylase
EYA88_RS06525	COG1914	H( )-stimulated, divalent metal cation uptake system
EYA88_RS06540	COG4682	membrane
EYA88_RS06545	COG3781	membrane
EYA88_RS06550	COG0243	molybdopterin cofactor binding
EYA88_RS06555	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EYA88_RS06580	COG1404	Belongs to the peptidase S8 family
EYA88_RS06615	COG2259	Doxx family
EYA88_RS06640	COG4160	amino acid transport
EYA88_RS06645	COG4598	ABC transporter
EYA88_RS06650	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
EYA88_RS06705	COG3275	phosphorelay sensor kinase activity
EYA88_RS06735	COG0500	methyltransferase
EYA88_RS06740	COG2207	Transcriptional regulator
EYA88_RS06760	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
EYA88_RS06765	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EYA88_RS06770	COG1024	Enoyl-CoA hydratase
EYA88_RS06775	COG1024	Enoyl-CoA hydratase
EYA88_RS06780	COG3425	synthase
EYA88_RS06800	COG2070	2-Nitropropane dioxygenase
EYA88_RS06800	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
EYA88_RS06805	COG0569	domain protein
EYA88_RS06805	COG0475	glutathione-regulated potassium exporter activity
EYA88_RS06820	COG4221	oxidoreductase activity
EYA88_RS06820	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EYA88_RS06820	COG0300	oxidoreductase activity
EYA88_RS06820	COG3321	synthase
EYA88_RS06835	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EYA88_RS06835	COG0300	oxidoreductase activity
EYA88_RS06835	COG3321	synthase
EYA88_RS06835	COG4221	oxidoreductase activity
EYA88_RS06870	COG0583	DNA-binding transcription factor activity
EYA88_RS06880	COG0387	Pfam Sodium calcium exchanger
EYA88_RS06905	COG0179	Fumarylacetoacetate (FAA) hydrolase
EYA88_RS06935	COG2353	YceI-like domain
EYA88_RS06955	COG1595	DNA-templated transcription, initiation
EYA88_RS06960	COG3712	iron ion homeostasis
EYA88_RS06965	COG4774	siderophore transport
EYA88_RS06970	COG1172	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS06975	COG1172	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS06980	COG1129	ABC transporter
EYA88_RS07015	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS07025	COG2271	Major facilitator Superfamily
EYA88_RS07125	COG0686	Belongs to the AlaDH PNT family
EYA88_RS07165	COG0443	Heat shock 70 kDa protein
EYA88_RS07170	COG0443	Heat shock 70 kDa protein
EYA88_RS07260	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
EYA88_RS07320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EYA88_RS07325	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EYA88_RS07340	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
EYA88_RS07355	COG1262	PFAM Formylglycine-generating sulfatase enzyme
EYA88_RS07360	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
EYA88_RS07360	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
EYA88_RS07410	COG1902	pentaerythritol trinitrate reductase activity
EYA88_RS07410	COG0446	pyridine nucleotide-disulphide oxidoreductase
EYA88_RS07415	COG1695	Transcriptional regulator
EYA88_RS07470	COG3260	NADH ubiquinone oxidoreductase 20
EYA88_RS07475	COG0649	NAD binding
EYA88_RS07480	COG0651	ATP synthesis coupled electron transport
EYA88_RS07490	COG0650	Formate hydrogenlyase subunit 4
EYA88_RS07495	COG0651	ATP synthesis coupled electron transport
EYA88_RS07535	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EYA88_RS07540	COG2181	nitrate reductase activity
EYA88_RS07545	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
EYA88_RS07550	COG1140	nitrate reductase beta subunit
EYA88_RS07555	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
EYA88_RS07565	COG3851	Histidine kinase
EYA88_RS07585	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EYA88_RS07610	COG2175	clavaminate synthase activity
EYA88_RS07630	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
EYA88_RS07655	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EYA88_RS07660	COG0339	signal peptide processing
EYA88_RS07680	COG0475	glutathione-regulated potassium exporter activity
EYA88_RS07745	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS07750	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EYA88_RS07810	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EYA88_RS07830	COG0540	Belongs to the ATCase OTCase family
EYA88_RS07915	COG0840	transmembrane signaling receptor activity
EYA88_RS07940	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS07945	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
EYA88_RS07945	COG4651	solute:proton antiporter activity
EYA88_RS08000	COG1349	DNA-binding transcription factor activity
EYA88_RS08005	COG2223	nitrite transmembrane transporter activity
EYA88_RS08050	COG1063	alcohol dehydrogenase
EYA88_RS08055	COG3842	ATPase activity
EYA88_RS08065	COG1070	Carbohydrate kinase
EYA88_RS08090	COG0243	molybdopterin cofactor binding
EYA88_RS08095	COG2146	nitrite reductase [NAD(P)H] activity
EYA88_RS08100	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EYA88_RS08125	COG3707	response regulator
EYA88_RS08130	COG1116	anion transmembrane transporter activity
EYA88_RS08130	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EYA88_RS08140	COG0302	gtp cyclohydrolase
EYA88_RS08180	COG0477	Major facilitator Superfamily
EYA88_RS08185	COG0583	DNA-binding transcription factor activity
EYA88_RS08200	COG0583	DNA-binding transcription factor activity
EYA88_RS08235	COG2130	NADP-dependent
EYA88_RS08240	COG1979	alcohol dehydrogenase
EYA88_RS08300	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EYA88_RS08340	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS08370	COG1739	Uncharacterized protein family UPF0029
EYA88_RS08400	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
EYA88_RS08440	COG2274	protein secretion by the type I secretion system
EYA88_RS08485	COG1201	RNA secondary structure unwinding
EYA88_RS08495	COG0531	amino acid
EYA88_RS08515	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
EYA88_RS08520	COG4122	O-methyltransferase activity
EYA88_RS08530	COG3706	GGDEF domain
EYA88_RS08530	COG5001	Diguanylate cyclase
EYA88_RS08530	COG4251	negative regulation of phosphorylation
EYA88_RS08530	COG2203	Gaf domain
EYA88_RS08550	COG0583	DNA-binding transcription factor activity
EYA88_RS08555	COG3485	protocatechuate 3,4-dioxygenase
EYA88_RS08560	COG3485	protocatechuate 3,4-dioxygenase
EYA88_RS08580	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
EYA88_RS08585	COG0601	transmembrane transport
EYA88_RS08590	COG0747	negative chemotaxis
EYA88_RS08595	COG4172	Belongs to the ABC transporter superfamily
EYA88_RS08600	COG1446	asparaginase
EYA88_RS08610	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
EYA88_RS08655	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
EYA88_RS08665	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
EYA88_RS08680	COG0277	FAD linked oxidase domain protein
EYA88_RS08735	COG2188	Transcriptional regulator
EYA88_RS08740	COG2814	Major facilitator Superfamily
EYA88_RS08755	COG1858	cytochrome C peroxidase
EYA88_RS08760	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
EYA88_RS08785	COG0456	acetyltransferase
EYA88_RS08795	COG2391	methyltransferase activity
EYA88_RS08800	COG0640	Transcriptional regulator
EYA88_RS08810	COG3038	cytochrome b561
EYA88_RS08815	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
EYA88_RS08820	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EYA88_RS08830	COG1045	serine acetyltransferase
EYA88_RS08845	COG1505	serine-type exopeptidase activity
EYA88_RS08860	COG1566	PFAM secretion protein HlyD family protein
EYA88_RS08885	COG2814	Major facilitator Superfamily
EYA88_RS08940	COG0477	Major facilitator Superfamily
EYA88_RS08950	COG0784	Response regulator, receiver
EYA88_RS08955	COG4251	negative regulation of phosphorylation
EYA88_RS08970	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
EYA88_RS09000	COG1278	Cold shock
EYA88_RS09040	COG0404	The glycine cleavage system catalyzes the degradation of glycine
EYA88_RS09040	COG0446	pyridine nucleotide-disulphide oxidoreductase
EYA88_RS09060	COG1760	l-serine dehydratase
EYA88_RS09100	COG1294	oxidase, subunit
EYA88_RS09105	COG1271	oxidase subunit
EYA88_RS09115	COG1285	pathogenesis
EYA88_RS09145	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EYA88_RS09160	COG4644	lycopene metabolic process
EYA88_RS09195	COG1450	Type ii and iii secretion system protein
EYA88_RS09200	COG2207	Transcriptional regulator
EYA88_RS09245	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
EYA88_RS09250	COG4789	Type iii secretion
EYA88_RS09330	COG2186	Transcriptional regulator
EYA88_RS09335	COG2084	Dehydrogenase
EYA88_RS09340	COG3395	kinase activity
EYA88_RS09345	COG0235	Class ii aldolase
EYA88_RS09350	COG2271	Major facilitator Superfamily
EYA88_RS09355	COG3622	Belongs to the hyi family
EYA88_RS09360	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
EYA88_RS09410	COG4175	Glycine betaine
EYA88_RS09445	COG0640	Transcriptional regulator
EYA88_RS09460	COG0798	PFAM Bile acid sodium symporter
EYA88_RS09495	COG5295	Hep Hag repeat protein
EYA88_RS09495	COG5295	Hep Hag repeat protein
EYA88_RS09535	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
EYA88_RS09540	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS09625	COG2271	Major facilitator Superfamily
EYA88_RS09670	COG1477	protein flavinylation
EYA88_RS09675	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS09680	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EYA88_RS09695	COG0583	DNA-binding transcription factor activity
EYA88_RS09710	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EYA88_RS09735	COG1349	DNA-binding transcription factor activity
EYA88_RS09745	COG2271	Major facilitator Superfamily
EYA88_RS09755	COG0246	Mannitol dehydrogenase
EYA88_RS09765	COG4948	Mandelate Racemase Muconate Lactonizing
EYA88_RS09770	COG1063	alcohol dehydrogenase
EYA88_RS09810	COG5441	Belongs to the UPF0261 family
EYA88_RS09815	COG5564	TIM-barrel signal transduction protein
EYA88_RS09850	COG3023	N-Acetylmuramoyl-L-alanine amidase
EYA88_RS09990	COG0302	gtp cyclohydrolase
EYA88_RS10050	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EYA88_RS10065	COG2916	Histone family protein nucleoid-structuring protein H-NS
EYA88_RS10100	COG4790	Type iii secretion
EYA88_RS10250	COG0477	Major facilitator Superfamily
EYA88_RS10285	COG1280	lysine exporter protein (LysE YggA)
EYA88_RS10290	COG1522	sequence-specific DNA binding
EYA88_RS10300	COG0306	phosphate transporter
EYA88_RS10325	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS10355	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EYA88_RS10365	COG4521	taurine ABC transporter
EYA88_RS10375	COG2175	clavaminate synthase activity
EYA88_RS10385	COG2194	sulfuric ester hydrolase activity
EYA88_RS10390	COG1215	transferase activity, transferring glycosyl groups
EYA88_RS10410	COG0457	Tetratricopeptide repeat
EYA88_RS10415	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
EYA88_RS10420	COG1215	transferase activity, transferring glycosyl groups
EYA88_RS10435	COG3550	peptidyl-serine autophosphorylation
EYA88_RS10450	COG0583	DNA-binding transcription factor activity
EYA88_RS10560	COG1450	Type ii and iii secretion system protein
EYA88_RS10610	COG2207	Transcriptional regulator
EYA88_RS10645	COG4794	Type iii secretion
EYA88_RS10650	COG4790	Type iii secretion
EYA88_RS10665	COG4789	Type iii secretion
EYA88_RS10670	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
EYA88_RS10785	COG0028	Belongs to the TPP enzyme family
EYA88_RS10790	COG0427	acetyl-CoA hydrolase
EYA88_RS10795	COG2030	dehydratase
EYA88_RS10805	COG0583	DNA-binding transcription factor activity
EYA88_RS10825	COG2814	Major facilitator Superfamily
EYA88_RS10835	COG4191	Histidine kinase
EYA88_RS10875	COG3621	Patatin-like phospholipase
EYA88_RS10915	COG1472	Belongs to the glycosyl hydrolase 3 family
EYA88_RS10925	COG0154	amidase activity
EYA88_RS10945	COG3276	selenocysteine insertion sequence binding
EYA88_RS10950	COG1921	L-seryl-tRNASec selenium transferase activity
EYA88_RS10960	COG2864	formate dehydrogenase
EYA88_RS10965	COG0437	4 iron, 4 sulfur cluster binding
EYA88_RS10970	COG3383	formate dehydrogenase (NAD+) activity
EYA88_RS10970	COG0243	molybdopterin cofactor binding
EYA88_RS10975	COG3383	formate dehydrogenase (NAD+) activity
EYA88_RS10975	COG0243	molybdopterin cofactor binding
EYA88_RS10995	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EYA88_RS11005	COG1126	abc transporter atp-binding protein
EYA88_RS11010	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EYA88_RS11015	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EYA88_RS11050	COG3608	succinylglutamate desuccinylase aspartoacylase
EYA88_RS11070	COG1295	ribonuclease BN
EYA88_RS11075	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS11105	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
EYA88_RS11105	COG2755	lipolytic protein G-D-S-L family
EYA88_RS11115	COG1210	Utp--glucose-1-phosphate uridylyltransferase
EYA88_RS11130	COG0438	transferase activity, transferring glycosyl groups
EYA88_RS11150	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
EYA88_RS11150	COG2755	lipolytic protein G-D-S-L family
EYA88_RS11155	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
EYA88_RS11160	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
EYA88_RS11195	COG0285	dihydrofolate synthase activity
EYA88_RS11200	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
EYA88_RS11205	COG0159	tryptophan synthase activity
EYA88_RS11215	COG0133	tryptophan synthase activity
EYA88_RS11220	COG0135	phosphoribosylanthranilate isomerase activity
EYA88_RS11275	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EYA88_RS11300	COG1522	sequence-specific DNA binding
EYA88_RS11330	COG0372	Belongs to the citrate synthase family
EYA88_RS11335	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
EYA88_RS11340	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
EYA88_RS11345	COG1053	succinate dehydrogenase
EYA88_RS11355	COG2009	succinate dehydrogenase
EYA88_RS11365	COG2188	Transcriptional regulator
EYA88_RS11390	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
EYA88_RS11395	COG3064	Membrane
EYA88_RS11395	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
EYA88_RS11395	COG3210	domain, Protein
EYA88_RS11400	COG2831	hemolysin activation secretion protein
EYA88_RS11465	COG1177	transmembrane transport
EYA88_RS11470	COG1176	ABC-type spermidine putrescine transport system, permease component I
EYA88_RS11480	COG3842	ATPase activity
EYA88_RS11495	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
EYA88_RS11500	COG4774	siderophore transport
EYA88_RS11510	COG3038	cytochrome b561
EYA88_RS11555	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
EYA88_RS11560	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
EYA88_RS11580	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
EYA88_RS11605	COG2081	HI0933 family
EYA88_RS11610	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
EYA88_RS11630	COG0142	geranyltranstransferase activity
EYA88_RS11650	COG0412	Dienelactone hydrolase
EYA88_RS11670	COG1252	NADH dehydrogenase
EYA88_RS11680	COG1611	Belongs to the LOG family
EYA88_RS11700	COG1683	Conserved Protein
EYA88_RS11735	COG4695	Portal protein
EYA88_RS11745	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
EYA88_RS11770	COG1846	Transcriptional regulator
EYA88_RS11775	COG1764	response to oxidative stress
EYA88_RS11795	COG0725	ABC transporter, periplasmic molybdate-binding protein
EYA88_RS11800	COG4149	molybdate abc transporter
EYA88_RS11835	COG0583	DNA-binding transcription factor activity
EYA88_RS11850	COG1253	flavin adenine dinucleotide binding
EYA88_RS11855	COG0352	thiamine-phosphate diphosphorylase activity
EYA88_RS11860	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
EYA88_RS11880	COG1304	FMN binding
EYA88_RS11945	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
EYA88_RS11965	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EYA88_RS12005	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
EYA88_RS12010	COG5654	RES domain protein
EYA88_RS12015	COG5642	Protein of unknown function (DUF2384)
EYA88_RS12040	COG0438	transferase activity, transferring glycosyl groups
EYA88_RS12045	COG0438	transferase activity, transferring glycosyl groups
EYA88_RS12065	COG3206	protein involved in exopolysaccharide biosynthesis
EYA88_RS12065	COG0489	protein tyrosine kinase activity
EYA88_RS12085	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
EYA88_RS12115	COG0247	lactate metabolic process
EYA88_RS12120	COG1592	Rubrerythrin
EYA88_RS12130	COG3023	N-Acetylmuramoyl-L-alanine amidase
EYA88_RS12145	COG4941	Belongs to the sigma-70 factor family
EYA88_RS12155	COG3795	YCII-related domain
EYA88_RS12160	COG3795	YCII-related domain
EYA88_RS12195	COG0628	permease
EYA88_RS12230	COG2130	NADP-dependent
EYA88_RS12255	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS12280	COG0583	DNA-binding transcription factor activity
EYA88_RS12310	COG2837	iron assimilation
EYA88_RS12320	COG5265	(ABC) transporter
EYA88_RS12330	COG4977	sequence-specific DNA binding
EYA88_RS12370	COG0038	chloride channel
EYA88_RS12410	COG0840	transmembrane signaling receptor activity
EYA88_RS12415	COG0642	Histidine kinase
EYA88_RS12430	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS12440	COG0025	NhaP-type Na H and K H
EYA88_RS12445	COG2733	membrane
EYA88_RS12465	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EYA88_RS12480	COG2146	nitrite reductase [NAD(P)H] activity
EYA88_RS12485	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
EYA88_RS12490	COG4638	Rieske (2fe-2S)
EYA88_RS12520	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
EYA88_RS12545	COG0446	pyridine nucleotide-disulphide oxidoreductase
EYA88_RS12545	COG1902	pentaerythritol trinitrate reductase activity
EYA88_RS12565	COG0583	DNA-binding transcription factor activity
EYA88_RS12570	COG4638	Rieske (2fe-2S)
EYA88_RS12575	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
EYA88_RS12580	COG0543	2 iron, 2 sulfur cluster binding
EYA88_RS12580	COG0633	Ferredoxin
EYA88_RS12585	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS12605	COG1335	isochorismatase
EYA88_RS12645	COG0833	amino acid
EYA88_RS12675	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
EYA88_RS12685	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS12695	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EYA88_RS12730	COG1611	Belongs to the LOG family
EYA88_RS12770	COG0840	transmembrane signaling receptor activity
EYA88_RS12800	COG1136	(ABC) transporter
EYA88_RS12815	COG0589	response to stress
EYA88_RS12835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EYA88_RS12845	COG0842	Transport permease protein
EYA88_RS12850	COG4191	Histidine kinase
EYA88_RS12850	COG0784	Response regulator, receiver
EYA88_RS12860	COG0840	transmembrane signaling receptor activity
EYA88_RS12890	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
EYA88_RS12895	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
EYA88_RS12895	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
EYA88_RS12905	COG0356	it plays a direct role in the translocation of protons across the membrane
EYA88_RS12920	COG0355	proton-transporting ATP synthase activity, rotational mechanism
EYA88_RS12925	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
EYA88_RS12940	COG0280	phosphate acetyltransferase
EYA88_RS12945	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
EYA88_RS12970	COG2823	Periplasmic or secreted lipoprotein
EYA88_RS12985	COG0295	cytidine deaminase activity
EYA88_RS13020	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
EYA88_RS13025	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
EYA88_RS13040	COG0625	glutathione transferase activity
EYA88_RS13075	COG0596	Alpha beta hydrolase
EYA88_RS13230	COG1573	uracil-dna glycosylase
EYA88_RS13235	COG2936	dipeptidyl-peptidase activity
EYA88_RS13245	COG1404	Belongs to the peptidase S8 family
EYA88_RS13315	COG0672	)-iron permease
EYA88_RS13330	COG0504	CTP synthase activity
EYA88_RS13405	COG1215	transferase activity, transferring glycosyl groups
EYA88_RS13440	COG0583	DNA-binding transcription factor activity
EYA88_RS13445	COG1253	flavin adenine dinucleotide binding
EYA88_RS13505	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
EYA88_RS13525	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS13535	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS13540	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
EYA88_RS13545	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS13560	COG3246	L-lysine catabolic process to acetate
EYA88_RS13570	COG1022	Amp-dependent synthetase and ligase
EYA88_RS13630	COG0494	nUDIX hydrolase
EYA88_RS13650	COG0402	S-adenosylhomocysteine deaminase activity
EYA88_RS13700	COG3209	COG3209 Rhs family protein
EYA88_RS13755	COG0395	ABC-type sugar transport system, permease component
EYA88_RS13760	COG1175	transmembrane transport
EYA88_RS13765	COG1653	transport
EYA88_RS13770	COG3842	ATPase activity
EYA88_RS13785	COG1609	Transcriptional regulator
EYA88_RS13945	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS13955	COG3048	D-serine ammonia-lyase activity
EYA88_RS13960	COG0583	DNA-binding transcription factor activity
EYA88_RS13985	COG0477	Major facilitator Superfamily
EYA88_RS13990	COG1104	cysteine desulfurase activity
EYA88_RS14005	COG0477	Major facilitator Superfamily
EYA88_RS14010	COG0583	DNA-binding transcription factor activity
EYA88_RS14020	COG0179	Fumarylacetoacetate (FAA) hydrolase
EYA88_RS14065	COG2916	Histone family protein nucleoid-structuring protein H-NS
EYA88_RS14090	COG2610	gluconate transmembrane transporter activity
EYA88_RS14140	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
EYA88_RS14145	COG0601	transmembrane transport
EYA88_RS14170	COG3104	oligopeptide transport
EYA88_RS14205	COG2079	MmgE PrpD family protein
EYA88_RS14210	COG2301	Belongs to the HpcH HpaI aldolase family
EYA88_RS14215	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EYA88_RS14225	COG1335	isochorismatase
EYA88_RS14230	COG0477	Major facilitator Superfamily
EYA88_RS14240	COG2271	Major facilitator Superfamily
EYA88_RS14250	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EYA88_RS14300	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
EYA88_RS14330	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
EYA88_RS14350	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
EYA88_RS14370	COG2879	small protein
EYA88_RS14375	COG1966	Carbon starvation protein
EYA88_RS14430	COG0463	Glycosyl transferase, family 2
EYA88_RS14525	COG1522	sequence-specific DNA binding
EYA88_RS14540	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS14545	COG1113	amino acid transport
EYA88_RS14635	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
EYA88_RS14645	COG3546	catalase activity
EYA88_RS14650	COG3685	Protein conserved in bacteria
EYA88_RS14735	COG0517	IMP dehydrogenase activity
EYA88_RS14735	COG0516	GMP reductase activity
EYA88_RS14755	COG1573	uracil-dna glycosylase
EYA88_RS14760	COG1914	H( )-stimulated, divalent metal cation uptake system
EYA88_RS14780	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS14805	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS14810	COG2823	Periplasmic or secreted lipoprotein
EYA88_RS14825	COG2205	protein histidine kinase activity
EYA88_RS14825	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EYA88_RS14825	COG0784	Response regulator, receiver
EYA88_RS14825	COG2198	Histidine kinase
EYA88_RS14840	COG2204	response regulator
EYA88_RS14875	COG2192	nodulation
EYA88_RS14880	COG0859	PFAM glycosyl transferase family 9
EYA88_RS14885	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
EYA88_RS14890	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS14900	COG5265	(ABC) transporter
EYA88_RS14920	COG0688	phosphatidylethanolamine metabolic process
EYA88_RS14925	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
EYA88_RS14940	COG2084	Dehydrogenase
EYA88_RS14945	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EYA88_RS14955	COG2091	lysine biosynthetic process via aminoadipic acid
EYA88_RS14975	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EYA88_RS15005	COG0022	dehydrogenase e1 component
EYA88_RS15065	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EYA88_RS15125	COG2239	Acts as a magnesium transporter
EYA88_RS15140	COG0071	Belongs to the small heat shock protein (HSP20) family
EYA88_RS15165	COG2909	trisaccharide binding
EYA88_RS15180	COG2175	clavaminate synthase activity
EYA88_RS15185	COG3246	L-lysine catabolic process to acetate
EYA88_RS15210	COG0243	molybdopterin cofactor binding
EYA88_RS15215	COG0437	4 iron, 4 sulfur cluster binding
EYA88_RS15220	COG3302	dmso reductase anchor subunit
EYA88_RS15285	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS15295	COG0154	amidase activity
EYA88_RS15320	COG0454	-acetyltransferase
EYA88_RS15320	COG0456	acetyltransferase
EYA88_RS15385	COG5002	protein histidine kinase activity
EYA88_RS15385	COG5001	Diguanylate cyclase
EYA88_RS15385	COG3447	MASE1 domain protein
EYA88_RS15430	COG1136	(ABC) transporter
EYA88_RS15435	COG2072	flavoprotein involved in K transport
EYA88_RS15445	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS15470	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
EYA88_RS15480	COG1126	abc transporter atp-binding protein
EYA88_RS15485	COG0765	amino acid transport
EYA88_RS15490	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EYA88_RS15505	COG1657	PFAM Prenyltransferase squalene oxidase
EYA88_RS15515	COG1562	ergosterol biosynthetic process
EYA88_RS15565	COG1595	DNA-templated transcription, initiation
EYA88_RS15575	COG1393	Belongs to the ArsC family
EYA88_RS15585	COG1192	Involved in chromosome partitioning
EYA88_RS15630	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
EYA88_RS15630	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EYA88_RS15640	COG0523	cobalamin synthesis protein
EYA88_RS15665	COG1459	type II secretion system
EYA88_RS15685	COG2165	general secretion pathway protein
EYA88_RS15730	COG1846	Transcriptional regulator
EYA88_RS15735	COG2814	Major facilitator Superfamily
EYA88_RS15740	COG0583	DNA-binding transcription factor activity
EYA88_RS15750	COG1346	cytolysis
EYA88_RS15770	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
EYA88_RS15785	COG1987	bacterial-type flagellum assembly
EYA88_RS15795	COG0789	Transcriptional regulator
EYA88_RS15800	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
EYA88_RS15800	COG4106	trans-aconitate 2-methyltransferase activity
EYA88_RS15810	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EYA88_RS15820	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EYA88_RS15835	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS15860	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS15940	COG1695	Transcriptional regulator
EYA88_RS15975	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS15985	COG0183	Belongs to the thiolase family
EYA88_RS15990	COG1250	3-hydroxyacyl-CoA dehydrogenase
EYA88_RS15990	COG1024	Enoyl-CoA hydratase
EYA88_RS15995	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EYA88_RS16040	COG0753	catalase activity
EYA88_RS16070	COG0592	DNA-directed DNA polymerase activity
EYA88_RS16135	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
EYA88_RS16165	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
EYA88_RS16165	COG2169	Transcriptional regulator
EYA88_RS16180	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
EYA88_RS16210	COG0583	DNA-binding transcription factor activity
EYA88_RS16225	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
EYA88_RS16240	COG4695	Portal protein
EYA88_RS16280	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
EYA88_RS16285	COG0583	DNA-binding transcription factor activity
EYA88_RS16305	COG0758	DNA mediated transformation
EYA88_RS16310	COG0242	peptide deformylase activity
EYA88_RS16335	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
EYA88_RS16335	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
EYA88_RS16345	COG5000	phosphorelay sensor kinase activity
EYA88_RS16350	COG2204	response regulator
EYA88_RS16400	COG0602	queuosine metabolic process
EYA88_RS16405	COG0720	synthase
EYA88_RS16430	COG0772	Belongs to the SEDS family
EYA88_RS16435	COG0768	penicillin binding
EYA88_RS16450	COG1077	Cell shape determining protein MreB Mrl
EYA88_RS16470	COG2326	polyphosphate kinase activity
EYA88_RS16475	COG0708	Exodeoxyribonuclease III
EYA88_RS16485	COG1064	alcohol dehydrogenase
EYA88_RS16490	COG2207	Transcriptional regulator
EYA88_RS16500	COG2814	Major facilitator Superfamily
EYA88_RS16515	COG1309	transcriptional regulator
EYA88_RS16545	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
EYA88_RS16575	COG0523	cobalamin synthesis protein
EYA88_RS16580	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
EYA88_RS16585	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
EYA88_RS16600	COG1560	Kdo2-lipid A biosynthetic process
EYA88_RS16630	COG0667	Aldo Keto reductase
EYA88_RS16650	COG2814	Major facilitator Superfamily
EYA88_RS16660	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
EYA88_RS16675	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS16735	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
EYA88_RS16750	COG0531	amino acid
EYA88_RS16770	COG1280	lysine exporter protein (LysE YggA)
EYA88_RS16775	COG3568	Endonuclease Exonuclease Phosphatase
EYA88_RS16795	COG0579	oxidoreductase
EYA88_RS16815	COG0747	negative chemotaxis
EYA88_RS16820	COG0601	transmembrane transport
EYA88_RS16825	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
EYA88_RS16830	COG0444	Belongs to the ABC transporter superfamily
EYA88_RS16835	COG4608	Belongs to the ABC transporter superfamily
EYA88_RS16865	COG1984	allophanate hydrolase subunit 2
EYA88_RS16870	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
EYA88_RS16880	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
EYA88_RS16885	COG0741	lytic transglycosylase activity
EYA88_RS16930	COG2747	anti-sigma28 factor FlgM
EYA88_RS16940	COG1815	bacterial-type flagellum-dependent cell motility
EYA88_RS16945	COG1558	bacterial-type flagellum-dependent cell motility
EYA88_RS16950	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
EYA88_RS16955	COG1749	Flagellar hook protein flgE
EYA88_RS16970	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
EYA88_RS16975	COG1706	bacterial-type flagellum-dependent cell motility
EYA88_RS16985	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
EYA88_RS16995	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
EYA88_RS17005	COG2233	PERMEase
EYA88_RS17015	COG0583	DNA-binding transcription factor activity
EYA88_RS17045	COG2824	Alkylphosphonate utilization operon protein PhnA
EYA88_RS17065	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS17175	COG1704	LemA family
EYA88_RS17180	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
EYA88_RS17200	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EYA88_RS17205	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EYA88_RS17220	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EYA88_RS17280	COG1609	Transcriptional regulator
EYA88_RS17285	COG0840	transmembrane signaling receptor activity
EYA88_RS17305	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS17310	COG0583	DNA-binding transcription factor activity
EYA88_RS17325	COG0596	Alpha beta hydrolase
EYA88_RS17355	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
EYA88_RS17375	COG3511	phospholipase C
EYA88_RS17410	COG1999	signal sequence binding
EYA88_RS17430	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EYA88_RS17505	COG0025	NhaP-type Na H and K H
EYA88_RS17510	COG2200	EAL domain
EYA88_RS17510	COG2199	diguanylate cyclase activity
EYA88_RS17525	COG1785	Belongs to the alkaline phosphatase family
EYA88_RS17555	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
EYA88_RS17575	COG3012	SEC-C Motif Domain Protein
EYA88_RS17585	COG0183	Belongs to the thiolase family
EYA88_RS17590	COG0288	reversible hydration of carbon dioxide
EYA88_RS17610	COG0488	(ABC) transporter
EYA88_RS17615	COG0747	negative chemotaxis
EYA88_RS17635	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS17640	COG4221	oxidoreductase activity
EYA88_RS17645	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
EYA88_RS17705	COG1024	Enoyl-CoA hydratase
EYA88_RS17730	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
EYA88_RS17740	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
EYA88_RS17755	COG0737	Belongs to the 5'-nucleotidase family
EYA88_RS17760	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
EYA88_RS17765	COG1127	ABC transporter
EYA88_RS17800	COG1686	Belongs to the peptidase S11 family
EYA88_RS17810	COG2921	Belongs to the UPF0250 family
EYA88_RS17815	COG0583	DNA-binding transcription factor activity
EYA88_RS17850	COG0583	DNA-binding transcription factor activity
EYA88_RS17855	COG1024	Enoyl-CoA hydratase
EYA88_RS17855	COG1250	3-hydroxyacyl-CoA dehydrogenase
EYA88_RS17860	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS17865	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS17870	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EYA88_RS17880	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
EYA88_RS17895	COG4191	Histidine kinase
EYA88_RS17905	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
EYA88_RS17945	COG2960	long-chain fatty acid transporting porin activity
EYA88_RS17955	COG0004	ammonium transporteR
EYA88_RS17970	COG0189	ligase activity
EYA88_RS17980	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
EYA88_RS17985	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
EYA88_RS17995	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
EYA88_RS18000	COG0793	Belongs to the peptidase S41A family
EYA88_RS18010	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
EYA88_RS18030	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
EYA88_RS18045	COG1040	competence protein
EYA88_RS18050	COG2226	methyltransferase
EYA88_RS18065	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EYA88_RS18075	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
EYA88_RS18105	COG1612	heme a metabolic process
EYA88_RS18115	COG1999	signal sequence binding
EYA88_RS18130	COG0840	transmembrane signaling receptor activity
EYA88_RS18160	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
EYA88_RS18175	COG0587	DNA-directed DNA polymerase activity
EYA88_RS18185	COG2814	Major facilitator Superfamily
EYA88_RS18220	COG2226	methyltransferase
EYA88_RS18230	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS18240	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS18285	COG0583	DNA-binding transcription factor activity
EYA88_RS18295	COG2188	Transcriptional regulator
EYA88_RS18300	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
EYA88_RS18305	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EYA88_RS18310	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
EYA88_RS18310	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
EYA88_RS18315	COG2190	(PTS) system
EYA88_RS18315	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EYA88_RS18315	COG1263	PTS System
EYA88_RS18345	COG1294	oxidase, subunit
EYA88_RS18360	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
EYA88_RS18370	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
EYA88_RS18380	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
EYA88_RS18395	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
EYA88_RS18400	COG0243	molybdopterin cofactor binding
EYA88_RS18410	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EYA88_RS18420	COG0625	glutathione transferase activity
EYA88_RS18430	COG0742	ribosomal rna small subunit methyltransferase
EYA88_RS18445	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
EYA88_RS18465	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
EYA88_RS18480	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
EYA88_RS18495	COG1194	a g-specific adenine glycosylase
EYA88_RS18520	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
EYA88_RS18530	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
EYA88_RS18535	COG1137	ATPase activity
EYA88_RS18550	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
EYA88_RS18575	COG1280	lysine exporter protein (LysE YggA)
EYA88_RS18605	COG2814	Major facilitator Superfamily
EYA88_RS18720	COG0235	Class ii aldolase
EYA88_RS18735	COG5001	Diguanylate cyclase
EYA88_RS18735	COG5002	protein histidine kinase activity
EYA88_RS18785	COG2204	response regulator
EYA88_RS18805	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
EYA88_RS18815	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EYA88_RS18835	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
EYA88_RS18840	COG1596	polysaccharide export
EYA88_RS18885	COG0477	Major facilitator Superfamily
EYA88_RS18910	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
EYA88_RS18915	COG0251	oxidation-reduction process
EYA88_RS18925	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
EYA88_RS18995	COG0494	nUDIX hydrolase
EYA88_RS19010	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS19015	COG1250	3-hydroxyacyl-CoA dehydrogenase
EYA88_RS19015	COG1024	Enoyl-CoA hydratase
EYA88_RS19020	COG0183	Belongs to the thiolase family
EYA88_RS19025	COG1024	Enoyl-CoA hydratase
EYA88_RS19030	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
EYA88_RS19050	COG5265	(ABC) transporter
EYA88_RS19060	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
EYA88_RS19065	COG3178	'Phosphotransferase
EYA88_RS19080	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
EYA88_RS19110	COG0204	Acyl-transferase
EYA88_RS19115	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
EYA88_RS19120	COG0751	glycine-tRNA ligase activity
EYA88_RS19125	COG0752	glycyl-tRNA synthetase alpha subunit
EYA88_RS19130	COG0815	Transfers the fatty acyl group on membrane lipoproteins
EYA88_RS19140	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
EYA88_RS19155	COG1702	phosphate starvation-inducible protein PhoH
EYA88_RS19170	COG0583	DNA-binding transcription factor activity
EYA88_RS19175	COG2814	Major facilitator Superfamily
EYA88_RS19180	COG1396	sequence-specific DNA binding
EYA88_RS19190	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EYA88_RS19205	COG0367	asparagine synthase
EYA88_RS19210	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
EYA88_RS19215	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
EYA88_RS19230	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
EYA88_RS19235	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
EYA88_RS19280	COG0513	Belongs to the DEAD box helicase family
EYA88_RS19315	COG4948	Mandelate Racemase Muconate Lactonizing
EYA88_RS19365	COG0840	transmembrane signaling receptor activity
EYA88_RS19385	COG0583	DNA-binding transcription factor activity
EYA88_RS19390	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
EYA88_RS19475	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EYA88_RS19480	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
EYA88_RS19485	COG0028	Belongs to the TPP enzyme family
EYA88_RS19525	COG0583	DNA-binding transcription factor activity
EYA88_RS19530	COG0784	Response regulator, receiver
EYA88_RS19530	COG5002	protein histidine kinase activity
EYA88_RS19580	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
EYA88_RS19585	COG2137	regulation of response to DNA damage stimulus
EYA88_RS19600	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
EYA88_RS19605	COG0861	Integral membrane protein TerC family
EYA88_RS19610	COG4969	Belongs to the N-Me-Phe pilin family
EYA88_RS19615	COG3307	-O-antigen
EYA88_RS19650	COG4783	chaperone-mediated protein folding
EYA88_RS19660	COG0429	hydrolase of the alpha beta-hydrolase fold
EYA88_RS19670	COG0859	PFAM glycosyl transferase family 9
EYA88_RS19695	COG0126	phosphoglycerate kinase activity
EYA88_RS19705	COG0469	pyruvate kinase activity
EYA88_RS19715	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
EYA88_RS19720	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
EYA88_RS19725	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
EYA88_RS19730	COG0009	L-threonylcarbamoyladenylate synthase
EYA88_RS19770	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EYA88_RS19800	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EYA88_RS19805	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EYA88_RS19820	COG2233	PERMEase
EYA88_RS19825	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
EYA88_RS19840	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
EYA88_RS19845	COG1108	ABC-type Mn2 Zn2 transport systems permease components
EYA88_RS19850	COG1121	(ABC) transporter
EYA88_RS19860	COG0735	belongs to the Fur family
EYA88_RS19870	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
EYA88_RS19885	COG1175	transmembrane transport
EYA88_RS19895	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EYA88_RS19900	COG3842	ATPase activity
EYA88_RS19915	COG0583	DNA-binding transcription factor activity
EYA88_RS19930	COG2390	Transcriptional regulator
EYA88_RS19935	COG1070	Carbohydrate kinase
EYA88_RS19940	COG0246	Mannitol dehydrogenase
EYA88_RS19945	COG0583	DNA-binding transcription factor activity
EYA88_RS19955	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS19960	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
EYA88_RS19970	COG2271	Major facilitator Superfamily
EYA88_RS19985	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
EYA88_RS19990	COG1522	sequence-specific DNA binding
EYA88_RS19995	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EYA88_RS20005	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
EYA88_RS20015	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
EYA88_RS20025	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
EYA88_RS20035	COG3118	belongs to the thioredoxin family
EYA88_RS20040	COG1741	Belongs to the pirin family
EYA88_RS20050	COG0860	N-Acetylmuramoyl-L-alanine amidase
EYA88_RS20055	COG0802	atpase or kinase
EYA88_RS20060	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
EYA88_RS20070	COG4974	Belongs to the 'phage' integrase family
EYA88_RS20075	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS20080	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
EYA88_RS20095	COG0812	UDP-N-acetylmuramate dehydrogenase activity
EYA88_RS20100	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
EYA88_RS20120	COG0728	peptidoglycan biosynthetic process
EYA88_RS20170	COG1570	exodeoxyribonuclease VII activity
EYA88_RS20175	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
EYA88_RS20240	COG2814	Major facilitator Superfamily
EYA88_RS20260	COG2188	Transcriptional regulator
EYA88_RS20265	COG0656	L-ascorbic acid biosynthetic process
EYA88_RS20300	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
EYA88_RS20340	COG1278	Cold shock
EYA88_RS20350	COG0542	response to heat
EYA88_RS20355	COG1113	amino acid transport
EYA88_RS20385	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
EYA88_RS20390	COG0196	riboflavin kinase activity
EYA88_RS20395	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
EYA88_RS20400	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
EYA88_RS20400	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
EYA88_RS20405	COG1511	domain protein
EYA88_RS20405	COG3264	Mechanosensitive ion channel
EYA88_RS20430	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
EYA88_RS20450	COG1047	Peptidyl-prolyl cis-trans
EYA88_RS20455	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
EYA88_RS20495	COG0456	acetyltransferase
EYA88_RS20500	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
EYA88_RS20505	COG0543	2 iron, 2 sulfur cluster binding
EYA88_RS20505	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
EYA88_RS20520	COG1187	pseudouridine synthase activity
EYA88_RS20530	COG0583	DNA-binding transcription factor activity
EYA88_RS20540	COG2267	carboxylic ester hydrolase activity
EYA88_RS20545	COG2258	MOSC domain
EYA88_RS20550	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EYA88_RS20560	COG1396	sequence-specific DNA binding
EYA88_RS20575	COG2801	Transposase and inactivated derivatives
EYA88_RS20600	COG0583	DNA-binding transcription factor activity
EYA88_RS20615	COG0175	sulfate reduction
EYA88_RS20625	COG2895	sulfate adenylyltransferase (ATP) activity
EYA88_RS20630	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
EYA88_RS20630	COG1648	precorrin-2 dehydrogenase activity
EYA88_RS20645	COG0795	lipopolysaccharide-transporting ATPase activity
EYA88_RS20665	COG4654	Cytochrome c, class I
EYA88_RS20680	COG0583	DNA-binding transcription factor activity
EYA88_RS20715	COG4206	TonB-dependent receptor
EYA88_RS20725	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
EYA88_RS20730	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
EYA88_RS20735	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
EYA88_RS20755	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
EYA88_RS20765	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
EYA88_RS20775	COG1492	cobalamin metabolic process
EYA88_RS20780	COG2259	Doxx family
EYA88_RS20785	COG0489	protein tyrosine kinase activity
EYA88_RS20805	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
EYA88_RS20815	COG0729	surface antigen
EYA88_RS20820	COG2911	Protein conserved in bacteria
EYA88_RS20850	COG3047	cAMP biosynthetic process
EYA88_RS20850	COG2885	chlorophyll binding
EYA88_RS20860	COG0489	protein tyrosine kinase activity
EYA88_RS20885	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EYA88_RS20925	COG2226	methyltransferase
EYA88_RS20965	COG2271	Major facilitator Superfamily
EYA88_RS20980	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
EYA88_RS20985	COG2827	Endonuclease containing a URI domain
EYA88_RS20995	COG1472	Belongs to the glycosyl hydrolase 3 family
EYA88_RS21015	COG0347	Belongs to the P(II) protein family
EYA88_RS21045	COG4215	(ABC) transporter
EYA88_RS21060	COG1741	Belongs to the pirin family
EYA88_RS21095	COG1176	ABC-type spermidine putrescine transport system, permease component I
EYA88_RS21100	COG1116	anion transmembrane transporter activity
EYA88_RS21130	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
EYA88_RS21150	COG2814	Major facilitator Superfamily
EYA88_RS21155	COG1881	PFAM PEBP family protein
EYA88_RS21275	COG1773	rubredoxin
EYA88_RS21290	COG0488	(ABC) transporter
EYA88_RS21320	COG0583	DNA-binding transcription factor activity
EYA88_RS21335	COG0583	DNA-binding transcription factor activity
EYA88_RS21345	COG0477	Major facilitator Superfamily
EYA88_RS21390	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EYA88_RS21395	COG0697	spore germination
EYA88_RS21405	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EYA88_RS21430	COG4106	trans-aconitate 2-methyltransferase activity
EYA88_RS21445	COG2764	glyoxalase bleomycin resistance protein dioxygenase
EYA88_RS21460	COG3135	benzoate transporter
EYA88_RS21500	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
EYA88_RS21505	COG2878	Part of a membrane complex involved in electron transport
EYA88_RS21510	COG1309	transcriptional regulator
EYA88_RS21520	COG3387	PFAM Glycoside hydrolase 15-related
EYA88_RS21530	COG2706	6-phosphogluconolactonase activity
EYA88_RS21575	COG0513	Belongs to the DEAD box helicase family
EYA88_RS21580	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
EYA88_RS21620	COG0438	transferase activity, transferring glycosyl groups
EYA88_RS21625	COG0859	PFAM glycosyl transferase family 9
EYA88_RS21670	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EYA88_RS21680	COG1595	DNA-templated transcription, initiation
EYA88_RS21735	COG2233	PERMEase
EYA88_RS21760	COG0799	negative regulation of ribosome biogenesis
EYA88_RS21775	COG0151	Belongs to the GarS family
EYA88_RS21795	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS21825	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
EYA88_RS21830	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
EYA88_RS21845	COG2205	protein histidine kinase activity
EYA88_RS21850	COG0745	RESPONSE REGULATOR receiver
EYA88_RS21885	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
EYA88_RS21895	COG0154	amidase activity
EYA88_RS21905	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
EYA88_RS21915	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS21935	COG0438	transferase activity, transferring glycosyl groups
EYA88_RS21970	COG0028	Belongs to the TPP enzyme family
EYA88_RS21990	COG1183	phosphatidylcholine synthase activity
EYA88_RS22000	COG0659	secondary active sulfate transmembrane transporter activity
EYA88_RS22005	COG0288	reversible hydration of carbon dioxide
EYA88_RS22020	COG0683	leucine binding
EYA88_RS22040	COG4221	oxidoreductase activity
EYA88_RS22040	COG3321	synthase
EYA88_RS22040	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EYA88_RS22040	COG0604	alcohol dehydrogenase
EYA88_RS22045	COG0149	triose-phosphate isomerase activity
EYA88_RS22080	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
EYA88_RS22090	COG1034	ATP synthesis coupled electron transport
EYA88_RS22125	COG1007	ATP synthesis coupled electron transport
EYA88_RS22145	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS22150	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS22155	COG2030	dehydratase
EYA88_RS22155	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS22175	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS22185	COG0588	phosphoglycerate mutase activity
EYA88_RS22190	COG1024	Enoyl-CoA hydratase
EYA88_RS22200	COG0436	Aminotransferase
EYA88_RS22215	COG2866	Carboxypeptidase
EYA88_RS22290	COG0006	proline dipeptidase activity
EYA88_RS22305	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
EYA88_RS22325	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EYA88_RS22360	COG2863	cytochrome
EYA88_RS22365	COG2010	Cytochrome c
EYA88_RS22365	COG1529	Aldehyde oxidase and xanthine dehydrogenase
EYA88_RS22380	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EYA88_RS22420	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EYA88_RS22425	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EYA88_RS22460	COG1959	2 iron, 2 sulfur cluster binding
EYA88_RS22480	COG1522	sequence-specific DNA binding
EYA88_RS22485	COG3842	ATPase activity
EYA88_RS22490	COG1176	ABC-type spermidine putrescine transport system, permease component I
EYA88_RS22495	COG1840	ABC-type Fe3 transport system, periplasmic component
EYA88_RS22520	COG1289	transmembrane transporter activity
EYA88_RS22530	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
EYA88_RS22535	COG1074	ATP-dependent DNA helicase activity
EYA88_RS22540	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
EYA88_RS22550	COG2200	EAL domain
EYA88_RS22605	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
EYA88_RS22610	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
EYA88_RS22625	COG0697	spore germination
EYA88_RS22635	COG2814	Major facilitator Superfamily
EYA88_RS22660	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
EYA88_RS22670	COG3842	ATPase activity
EYA88_RS22675	COG1177	transmembrane transport
EYA88_RS22690	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
EYA88_RS22695	COG1840	ABC-type Fe3 transport system, periplasmic component
EYA88_RS22700	COG1609	Transcriptional regulator
EYA88_RS22775	COG1522	sequence-specific DNA binding
EYA88_RS22805	COG0583	DNA-binding transcription factor activity
EYA88_RS22840	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EYA88_RS22890	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
EYA88_RS22895	COG1250	3-hydroxyacyl-CoA dehydrogenase
EYA88_RS22905	COG0583	DNA-binding transcription factor activity
EYA88_RS22930	COG3052	prosthetic group binding
EYA88_RS22960	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EYA88_RS22990	COG0477	Major facilitator Superfamily
EYA88_RS23005	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
EYA88_RS23010	COG0328	RNA-DNA hybrid ribonuclease activity
EYA88_RS23015	COG2226	methyltransferase
EYA88_RS23020	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EYA88_RS23025	COG1388	LysM domain
EYA88_RS23025	COG0741	lytic transglycosylase activity
EYA88_RS23055	COG0505	Belongs to the CarA family
EYA88_RS23065	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
EYA88_RS23070	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
EYA88_RS23080	COG1534	Rna-binding protein
EYA88_RS23090	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
EYA88_RS23095	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
EYA88_RS23110	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
EYA88_RS23115	COG0573	inorganic phosphate transmembrane transporter activity
EYA88_RS23120	COG0581	inorganic phosphate transmembrane transporter activity
EYA88_RS23135	COG0745	RESPONSE REGULATOR receiver
EYA88_RS23150	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
EYA88_RS23230	COG0534	Mate efflux family protein
EYA88_RS23245	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
EYA88_RS23250	COG4942	peptidase
EYA88_RS23275	COG0582	viral genome integration into host DNA
EYA88_RS23370	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
EYA88_RS23380	COG1846	Transcriptional regulator
EYA88_RS23385	COG1929	Belongs to the glycerate kinase type-1 family
EYA88_RS23415	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
EYA88_RS23495	COG4181	ATPase activity
EYA88_RS23515	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EYA88_RS23525	COG0047	phosphoribosylformylglycinamidine synthase activity
EYA88_RS23525	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
EYA88_RS23535	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EYA88_RS23560	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS23570	COG1024	Enoyl-CoA hydratase
EYA88_RS23570	COG1250	3-hydroxyacyl-CoA dehydrogenase
EYA88_RS23575	COG1335	isochorismatase
EYA88_RS23580	COG0183	Belongs to the thiolase family
EYA88_RS23615	COG2130	NADP-dependent
EYA88_RS23620	COG0657	acetylesterase activity
EYA88_RS23635	COG0354	folic acid binding
EYA88_RS23640	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
EYA88_RS23655	COG1247	-acetyltransferase
EYA88_RS23660	COG0084	hydrolase, TatD family'
EYA88_RS23690	COG0438	transferase activity, transferring glycosyl groups
EYA88_RS23725	COG0252	asparaginase activity
EYA88_RS23735	COG1652	LysM domain
EYA88_RS23745	COG2084	Dehydrogenase
EYA88_RS23750	COG3622	Belongs to the hyi family
EYA88_RS23755	COG3960	tartronate-semialdehyde synthase activity
EYA88_RS23760	COG0583	DNA-binding transcription factor activity
EYA88_RS23775	COG1595	DNA-templated transcription, initiation
EYA88_RS23820	COG0306	phosphate transporter
EYA88_RS23830	COG0791	NLP P60 protein
EYA88_RS23835	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
EYA88_RS23845	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
EYA88_RS23850	COG0726	polysaccharide deacetylase
EYA88_RS23855	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
EYA88_RS23855	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
EYA88_RS23865	COG0463	Glycosyl transferase, family 2
EYA88_RS23870	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
EYA88_RS23875	COG2076	Multidrug Resistance protein
EYA88_RS23880	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
EYA88_RS23890	COG0436	Aminotransferase
EYA88_RS23920	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
EYA88_RS23925	COG0314	molybdopterin synthase activity
EYA88_RS23930	COG2346	COG2346, Truncated hemoglobins
EYA88_RS23935	COG1959	2 iron, 2 sulfur cluster binding
EYA88_RS23940	COG0542	response to heat
EYA88_RS23970	COG0534	Mate efflux family protein
EYA88_RS23990	COG3228	Belongs to the MtfA family
EYA88_RS23995	COG0477	Major facilitator Superfamily
EYA88_RS24000	COG0789	Transcriptional regulator
EYA88_RS24005	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
EYA88_RS24030	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
EYA88_RS24045	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EYA88_RS24090	COG0670	Belongs to the BI1 family
EYA88_RS24125	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
EYA88_RS24140	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
EYA88_RS24145	COG0330	HflC and HflK could
EYA88_RS24150	COG0330	HflC and HflK could
EYA88_RS24175	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
EYA88_RS24195	COG2183	response to ionizing radiation
EYA88_RS24210	COG1199	ATP-dependent helicase activity
EYA88_RS24225	COG0564	pseudouridine synthase activity
EYA88_RS24230	COG1496	oxidoreductase activity
EYA88_RS24235	COG3243	poly(R)-hydroxyalkanoic acid synthase
EYA88_RS24240	COG0183	Belongs to the thiolase family
EYA88_RS24245	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS24270	COG0183	Belongs to the thiolase family
EYA88_RS24280	COG0626	cystathionine gamma-synthase activity
EYA88_RS24285	COG0560	Phosphoserine phosphatase
EYA88_RS24305	COG0390	transport system, permease component
EYA88_RS24310	COG1122	ATPase activity
EYA88_RS24315	COG2982	Protein involved in outer membrane biogenesis
EYA88_RS24325	COG0488	(ABC) transporter
EYA88_RS24345	COG2070	2-Nitropropane dioxygenase
EYA88_RS24350	COG3047	cAMP biosynthetic process
EYA88_RS24365	COG1914	H( )-stimulated, divalent metal cation uptake system
EYA88_RS24370	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
EYA88_RS24375	COG3842	ATPase activity
EYA88_RS24380	COG1176	ABC-type spermidine putrescine transport system, permease component I
EYA88_RS24385	COG1177	transmembrane transport
EYA88_RS24390	COG0730	response to heat
EYA88_RS24390	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EYA88_RS24415	COG3655	Transcriptional regulator
EYA88_RS24440	COG1538	Outer membrane efflux protein
EYA88_RS24445	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EYA88_RS24460	COG0038	chloride channel
EYA88_RS24465	COG2855	membrane
EYA88_RS24485	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
EYA88_RS24495	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
EYA88_RS24505	COG1609	Transcriptional regulator
EYA88_RS24585	COG0598	Magnesium transport protein CorA
EYA88_RS24630	COG3264	Mechanosensitive ion channel
EYA88_RS24630	COG1196	nuclear chromosome segregation
EYA88_RS24670	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
EYA88_RS24685	COG4263	nitrous-oxide reductase activity
EYA88_RS24710	COG0840	transmembrane signaling receptor activity
EYA88_RS24720	COG2376	Dihydroxyacetone kinase
EYA88_RS24740	COG0475	glutathione-regulated potassium exporter activity
EYA88_RS24825	COG3121	Chaperone
EYA88_RS24850	COG5295	Hep Hag repeat protein
EYA88_RS24885	COG2197	response regulator
EYA88_RS24955	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EYA88_RS24960	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS24975	COG1176	ABC-type spermidine putrescine transport system, permease component I
EYA88_RS24985	COG3842	ATPase activity
EYA88_RS25000	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS25020	COG2916	Histone family protein nucleoid-structuring protein H-NS
EYA88_RS25050	COG2274	protein secretion by the type I secretion system
EYA88_RS25055	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EYA88_RS25065	COG0457	Tetratricopeptide repeat
EYA88_RS25065	COG0859	PFAM glycosyl transferase family 9
EYA88_RS25070	COG0529	Catalyzes the synthesis of activated sulfate
EYA88_RS25080	COG0745	RESPONSE REGULATOR receiver
EYA88_RS25110	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS25120	COG2986	histidine ammonia-lyase
EYA88_RS25130	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
EYA88_RS25145	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
EYA88_RS25170	COG1595	DNA-templated transcription, initiation
EYA88_RS25175	COG4944	Protein of unknown function (DUF1109)
EYA88_RS25195	COG3220	belongs to the UPF0276 family
EYA88_RS25215	COG2801	Transposase and inactivated derivatives
EYA88_RS25265	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
EYA88_RS25275	COG5295	Hep Hag repeat protein
EYA88_RS25275	COG5295	Hep Hag repeat protein
EYA88_RS25335	COG2192	nodulation
EYA88_RS25360	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
EYA88_RS25380	COG0165	Argininosuccinate lyase
EYA88_RS25385	COG0137	argininosuccinate synthase activity
EYA88_RS25400	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
EYA88_RS25410	COG3251	PFAM MbtH domain protein
EYA88_RS25430	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS25440	COG2207	Transcriptional regulator
EYA88_RS25450	COG0697	spore germination
EYA88_RS25455	COG0835	chemotaxis
EYA88_RS25480	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS25485	COG0477	Major facilitator Superfamily
EYA88_RS25505	COG1732	Glycine betaine
EYA88_RS25510	COG1174	glycine betaine transport
EYA88_RS25515	COG1125	glycine betaine transport
EYA88_RS25520	COG1174	glycine betaine transport
EYA88_RS25540	COG2235	arginine
EYA88_RS25545	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
EYA88_RS25570	COG0583	DNA-binding transcription factor activity
EYA88_RS25575	COG0625	glutathione transferase activity
EYA88_RS25590	COG1846	Transcriptional regulator
EYA88_RS25595	COG2807	transmembrane transport
EYA88_RS25600	COG1649	PFAM Uncharacterised BCR, COG1649
EYA88_RS25620	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
EYA88_RS25630	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EYA88_RS25650	COG3979	chitinase
EYA88_RS25670	COG0400	carboxylic ester hydrolase activity
EYA88_RS25705	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
EYA88_RS25730	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
EYA88_RS25735	COG4774	siderophore transport
EYA88_RS25740	COG3486	L-lysine 6-monooxygenase (NADPH) activity
EYA88_RS25790	COG1120	ATPase activity
EYA88_RS25825	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS25835	COG1063	alcohol dehydrogenase
EYA88_RS25845	COG1172	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS25850	COG1129	ABC transporter
EYA88_RS25855	COG1879	ABC-type sugar transport system periplasmic component
EYA88_RS25890	COG2375	cellular response to nickel ion
EYA88_RS25890	COG1132	(ABC) transporter
EYA88_RS25900	COG3121	Chaperone
EYA88_RS25910	COG3539	Fimbrial protein
EYA88_RS25940	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EYA88_RS25950	COG1309	transcriptional regulator
EYA88_RS25960	COG0739	heme binding
EYA88_RS25965	COG0765	amino acid transport
EYA88_RS25970	COG4597	amino acid ABC transporter
EYA88_RS25985	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EYA88_RS26035	COG4964	Belongs to the GSP D family
EYA88_RS26060	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EYA88_RS26065	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
EYA88_RS26080	COG0477	Major facilitator Superfamily
EYA88_RS26090	COG2719	SpoVR family
EYA88_RS26095	COG2718	Belongs to the UPF0229 family
EYA88_RS26100	COG2766	serine protein kinase
EYA88_RS26110	COG0840	transmembrane signaling receptor activity
EYA88_RS26115	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
EYA88_RS26120	COG1609	Transcriptional regulator
EYA88_RS26125	COG1172	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS26130	COG1129	ABC transporter
EYA88_RS26135	COG1879	ABC-type sugar transport system periplasmic component
EYA88_RS26140	COG0583	DNA-binding transcription factor activity
EYA88_RS26145	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
EYA88_RS26150	COG4208	sulfate ABC transporter
EYA88_RS26155	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
EYA88_RS26160	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
EYA88_RS26195	COG1131	(ABC) transporter
EYA88_RS26210	COG0701	Predicted permease
EYA88_RS26215	COG0667	Aldo Keto reductase
EYA88_RS26245	COG1301	dicarboxylic acid transport
EYA88_RS26285	COG1116	anion transmembrane transporter activity
EYA88_RS26290	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EYA88_RS26345	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
EYA88_RS26355	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EYA88_RS26360	COG0765	amino acid transport
EYA88_RS26365	COG0673	inositol 2-dehydrogenase activity
EYA88_RS26370	COG1802	Transcriptional regulator
EYA88_RS26380	COG3023	N-Acetylmuramoyl-L-alanine amidase
EYA88_RS26390	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
EYA88_RS26395	COG0557	exoribonuclease II activity
EYA88_RS26410	COG0840	transmembrane signaling receptor activity
EYA88_RS26440	COG0519	Catalyzes the synthesis of GMP from XMP
EYA88_RS26450	COG2814	Major facilitator Superfamily
EYA88_RS26460	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS26530	COG4964	Belongs to the GSP D family
EYA88_RS26590	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
EYA88_RS26595	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
EYA88_RS26600	COG0508	dehydrogenase complex catalyzes the overall conversion of
EYA88_RS26605	COG0567	Dehydrogenase, E1 component
EYA88_RS26620	COG1217	gtp-binding protein TYPA
EYA88_RS26630	COG1846	Transcriptional regulator
EYA88_RS26640	COG1566	PFAM secretion protein HlyD family protein
EYA88_RS26645	COG2814	Major facilitator Superfamily
EYA88_RS26655	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
EYA88_RS26670	COG0195	Participates in both transcription termination and antitermination
EYA88_RS26670	COG2251	uridine kinase activity
EYA88_RS26680	COG1187	pseudouridine synthase activity
EYA88_RS26690	COG0583	DNA-binding transcription factor activity
EYA88_RS26750	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
EYA88_RS26775	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
EYA88_RS26775	COG2755	lipolytic protein G-D-S-L family
EYA88_RS26790	COG0776	regulation of translation
EYA88_RS26815	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
EYA88_RS26830	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
EYA88_RS26835	COG0251	oxidation-reduction process
EYA88_RS26850	COG0583	DNA-binding transcription factor activity
EYA88_RS26865	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS26925	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS26950	COG0477	Major facilitator Superfamily
EYA88_RS26975	COG1295	ribonuclease BN
EYA88_RS26990	COG0277	FAD linked oxidase domain protein
EYA88_RS27005	COG0583	DNA-binding transcription factor activity
EYA88_RS27035	COG0840	transmembrane signaling receptor activity
EYA88_RS27040	COG2223	nitrite transmembrane transporter activity
EYA88_RS27050	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
EYA88_RS27055	COG0210	DNA helicase
EYA88_RS27060	COG0525	valine-tRNA ligase activity
EYA88_RS27065	COG1210	Utp--glucose-1-phosphate uridylyltransferase
EYA88_RS27075	COG5002	protein histidine kinase activity
EYA88_RS27085	COG0745	RESPONSE REGULATOR receiver
EYA88_RS27095	COG0425	Belongs to the sulfur carrier protein TusA family
EYA88_RS27105	COG0673	inositol 2-dehydrogenase activity
EYA88_RS27110	COG0673	inositol 2-dehydrogenase activity
EYA88_RS27125	COG1172	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS27140	COG3962	Belongs to the TPP enzyme family
EYA88_RS27150	COG3718	enzyme involved in inositol metabolism
EYA88_RS27170	COG0824	Thioesterase
EYA88_RS27195	COG2816	NAD+ diphosphatase activity
EYA88_RS27210	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EYA88_RS27235	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EYA88_RS27245	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
EYA88_RS27255	COG0494	nUDIX hydrolase
EYA88_RS27285	COG1858	cytochrome C peroxidase
EYA88_RS27290	COG3511	phospholipase C
EYA88_RS27305	COG1566	PFAM secretion protein HlyD family protein
EYA88_RS27315	COG2814	Major facilitator Superfamily
EYA88_RS27320	COG1538	Outer membrane efflux protein
EYA88_RS27330	COG2197	response regulator
EYA88_RS27385	COG0583	DNA-binding transcription factor activity
EYA88_RS27395	COG2814	Major facilitator Superfamily
EYA88_RS27565	COG0859	PFAM glycosyl transferase family 9
EYA88_RS27565	COG0457	Tetratricopeptide repeat
EYA88_RS27605	COG0745	RESPONSE REGULATOR receiver
EYA88_RS27610	COG0583	DNA-binding transcription factor activity
EYA88_RS27660	COG0366	Alpha amylase catalytic
EYA88_RS27665	COG0366	Alpha amylase catalytic
EYA88_RS27685	COG1640	4-alpha-glucanotransferase
EYA88_RS27720	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
EYA88_RS27805	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EYA88_RS27820	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
EYA88_RS27905	COG3360	Dodecin
EYA88_RS27915	COG0583	DNA-binding transcription factor activity
EYA88_RS27930	COG2351	hydroxyisourate hydrolase activity
EYA88_RS27945	COG4266	Belongs to the allantoicase family
EYA88_RS27950	COG3648	Uricase
EYA88_RS27950	COG3195	allantoin biosynthetic process
EYA88_RS27965	COG1953	Uracil, thiamine, allantoin
EYA88_RS27975	COG1619	proteins homologs of microcin C7 resistance protein MccF
EYA88_RS28015	COG2814	Major facilitator Superfamily
EYA88_RS28070	COG0697	spore germination
EYA88_RS28080	COG2867	negative regulation of translational initiation
EYA88_RS28090	COG0330	HflC and HflK could
EYA88_RS28140	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
EYA88_RS28180	COG0750	zinc metalloprotease
EYA88_RS28195	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
EYA88_RS28225	COG0024	Methionine aminopeptidase
EYA88_RS28240	COG0242	peptide deformylase activity
EYA88_RS28285	COG1393	Belongs to the ArsC family
EYA88_RS28295	COG2890	protein-(glutamine-N5) methyltransferase activity
EYA88_RS28310	COG0386	Belongs to the glutathione peroxidase family
EYA88_RS28315	COG0488	(ABC) transporter
EYA88_RS28335	COG0477	Major facilitator Superfamily
EYA88_RS28340	COG0351	phosphomethylpyrimidine kinase
EYA88_RS28355	COG1573	uracil-dna glycosylase
EYA88_RS28365	COG1214	PFAM Peptidase M22, glycoprotease
EYA88_RS28375	COG0513	Belongs to the DEAD box helicase family
EYA88_RS28380	COG2224	Isocitrate lyase
EYA88_RS28390	COG0583	DNA-binding transcription factor activity
EYA88_RS28400	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
EYA88_RS28465	COG1752	Esterase of the alpha-beta hydrolase superfamily
EYA88_RS28470	COG0791	NLP P60 protein
EYA88_RS28480	COG4172	Belongs to the ABC transporter superfamily
EYA88_RS28485	COG4239	(ABC) transporter, permease
EYA88_RS28490	COG4174	ABC transporter (Permease)
EYA88_RS28495	COG4166	transmembrane transport
EYA88_RS28520	COG0243	molybdopterin cofactor binding
EYA88_RS28535	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
EYA88_RS28555	COG0024	Methionine aminopeptidase
EYA88_RS28575	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
EYA88_RS28595	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
EYA88_RS28610	COG3958	Transketolase
EYA88_RS28615	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
EYA88_RS28635	COG2175	clavaminate synthase activity
EYA88_RS28665	COG0529	Catalyzes the synthesis of activated sulfate
EYA88_RS28665	COG2895	sulfate adenylyltransferase (ATP) activity
EYA88_RS28725	COG0527	aspartate kinase activity
EYA88_RS28735	COG0037	tRNA processing
EYA88_RS28760	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
EYA88_RS28770	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
EYA88_RS28780	COG1045	serine acetyltransferase
EYA88_RS28795	COG0483	inositol monophosphate 1-phosphatase activity
EYA88_RS28825	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
EYA88_RS28840	COG2850	peptidyl-arginine hydroxylation
EYA88_RS28855	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
EYA88_RS28860	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
EYA88_RS28865	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EYA88_RS28875	COG0180	Tryptophanyl-tRNA synthetase
EYA88_RS28880	COG1994	Peptidase M50
EYA88_RS28885	COG0009	L-threonylcarbamoyladenylate synthase
EYA88_RS28890	COG0613	PHP domain protein
EYA88_RS28900	COG0596	Alpha beta hydrolase
EYA88_RS28910	COG2833	Protein of unknown function (DUF455)
EYA88_RS28920	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
EYA88_RS28930	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
EYA88_RS28955	COG2267	carboxylic ester hydrolase activity
EYA88_RS28960	COG2333	competence protein COMEC
EYA88_RS28960	COG0658	competence protein
EYA88_RS28965	COG0084	hydrolase, TatD family'
EYA88_RS28970	COG1136	(ABC) transporter
EYA88_RS28990	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
EYA88_RS29015	COG2975	iron-sulfur cluster assembly
EYA88_RS29025	COG0443	Heat shock 70 kDa protein
EYA88_RS29035	COG0316	Belongs to the HesB IscA family
EYA88_RS29040	COG0822	iron-sulfur transferase activity
EYA88_RS29045	COG1104	cysteine desulfurase activity
EYA88_RS29055	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
EYA88_RS29080	COG1414	Transcriptional regulator
EYA88_RS29105	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
EYA88_RS29115	COG0508	dehydrogenase complex catalyzes the overall conversion of
EYA88_RS29120	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
EYA88_RS29130	COG4566	intracellular signal transduction
EYA88_RS29150	COG0339	signal peptide processing
EYA88_RS29155	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
EYA88_RS29175	COG2223	nitrite transmembrane transporter activity
EYA88_RS29180	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
EYA88_RS29185	COG1140	nitrate reductase beta subunit
EYA88_RS29190	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
EYA88_RS29195	COG2181	nitrate reductase activity
EYA88_RS29200	COG4585	Histidine kinase
EYA88_RS29205	COG2197	response regulator
EYA88_RS29230	COG0174	glutamine synthetase
EYA88_RS29245	COG1058	Belongs to the CinA family
EYA88_RS29245	COG1546	Belongs to the CinA family
EYA88_RS29270	COG1643	Atp-dependent helicase
EYA88_RS29275	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
EYA88_RS29275	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
EYA88_RS29285	COG0477	Major facilitator Superfamily
EYA88_RS29300	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS29305	COG0583	DNA-binding transcription factor activity
EYA88_RS29330	COG0174	glutamine synthetase
EYA88_RS29335	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
EYA88_RS29375	COG0402	S-adenosylhomocysteine deaminase activity
EYA88_RS29390	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
EYA88_RS29440	COG0529	Catalyzes the synthesis of activated sulfate
EYA88_RS29445	COG0415	Belongs to the DNA photolyase family
EYA88_RS29505	COG3154	lipid carrier protein
EYA88_RS29510	COG0826	peptidase U32
EYA88_RS29515	COG0826	peptidase U32
EYA88_RS29540	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EYA88_RS29545	COG0635	Involved in the biosynthesis of porphyrin-containing compound
EYA88_RS29550	COG0840	transmembrane signaling receptor activity
EYA88_RS29570	COG0719	Fe-S assembly protein
EYA88_RS29575	COG0396	ATPase activity
EYA88_RS29585	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
EYA88_RS29590	COG0822	iron-sulfur transferase activity
EYA88_RS29595	COG2151	metal-sulfur cluster biosynthetic enzyme
EYA88_RS29610	COG1959	2 iron, 2 sulfur cluster binding
EYA88_RS29640	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
EYA88_RS29650	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EYA88_RS29685	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
EYA88_RS29745	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EYA88_RS29750	COG0596	Alpha beta hydrolase
EYA88_RS29760	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
EYA88_RS29770	COG3511	phospholipase C
EYA88_RS29780	COG0683	leucine binding
EYA88_RS29785	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EYA88_RS29800	COG0438	transferase activity, transferring glycosyl groups
EYA88_RS29805	COG1132	(ABC) transporter
EYA88_RS29810	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
EYA88_RS29825	COG1999	signal sequence binding
EYA88_RS29840	COG2153	protein acetylation
EYA88_RS29855	COG0583	DNA-binding transcription factor activity
EYA88_RS29860	COG1956	GAF domain-containing protein
EYA88_RS29885	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
EYA88_RS29890	COG0322	excinuclease ABC activity
EYA88_RS29905	COG2204	response regulator
EYA88_RS29920	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
EYA88_RS29930	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
EYA88_RS29935	COG0571	ribonuclease III activity
EYA88_RS29940	COG0681	Belongs to the peptidase S26 family
EYA88_RS29955	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EYA88_RS29960	COG3026	antisigma factor binding
EYA88_RS29980	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
EYA88_RS30020	COG1399	metal-binding, possibly nucleic acid-binding protein
EYA88_RS30045	COG0546	phosphoglycolate phosphatase activity
EYA88_RS30060	COG1530	ribonuclease E activity
EYA88_RS30065	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
EYA88_RS30075	COG0303	'Molybdopterin
EYA88_RS30090	COG1322	Protein conserved in bacteria
EYA88_RS30110	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
EYA88_RS30120	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
EYA88_RS30135	COG3045	CreA protein
EYA88_RS30155	COG2501	S4 domain
EYA88_RS30160	COG0534	Mate efflux family protein
EYA88_RS30170	COG0114	fumarate hydratase activity
EYA88_RS30195	COG0640	Transcriptional regulator
EYA88_RS30205	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
EYA88_RS30235	COG2204	response regulator
EYA88_RS30240	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
EYA88_RS30250	COG0312	modulator of DNA gyrase
EYA88_RS30260	COG3028	Belongs to the UPF0307 family
EYA88_RS30265	COG0521	Mo-molybdopterin cofactor biosynthetic process
EYA88_RS30275	COG0501	Belongs to the peptidase M48B family
EYA88_RS30290	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
EYA88_RS30370	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS30390	COG2011	ABC-type metal ion transport system permease component
EYA88_RS30400	COG2267	carboxylic ester hydrolase activity
EYA88_RS30410	COG0123	including yeast histone deacetylase and acetoin utilization protein
EYA88_RS30440	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
EYA88_RS30450	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
EYA88_RS30475	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
EYA88_RS30485	COG0077	Prephenate dehydratase
EYA88_RS30485	COG1605	Chorismate mutase
EYA88_RS30490	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
EYA88_RS30520	COG0546	phosphoglycolate phosphatase activity
EYA88_RS30530	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
EYA88_RS30540	COG1910	domain protein
EYA88_RS30555	COG3383	formate dehydrogenase (NAD+) activity
EYA88_RS30595	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
EYA88_RS30605	COG0154	amidase activity
EYA88_RS30625	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
EYA88_RS30630	COG2252	PERMEase
EYA88_RS30635	COG0402	S-adenosylhomocysteine deaminase activity
EYA88_RS30645	COG2119	membrane
EYA88_RS30660	COG0308	aminopeptidase N
EYA88_RS30670	COG0583	DNA-binding transcription factor activity
EYA88_RS30730	COG4772	TonB-dependent receptor
EYA88_RS30750	COG2176	DNA-directed DNA polymerase activity
EYA88_RS30755	COG1278	Cold shock
EYA88_RS30765	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS30785	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
EYA88_RS30800	COG1561	YicC-like family, N-terminal region
EYA88_RS30810	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
EYA88_RS30815	COG0635	Involved in the biosynthesis of porphyrin-containing compound
EYA88_RS30850	COG0477	Major facilitator Superfamily
EYA88_RS30860	COG0859	PFAM glycosyl transferase family 9
EYA88_RS30880	COG2894	cell division
EYA88_RS30925	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
EYA88_RS30930	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
EYA88_RS30935	COG1674	ftsk spoiiie
EYA88_RS30940	COG0492	ferredoxin-NADP+ reductase activity
EYA88_RS30945	COG1193	negative regulation of DNA recombination
EYA88_RS30950	COG2860	membrane
EYA88_RS30955	COG3842	ATPase activity
EYA88_RS30960	COG0395	ABC-type sugar transport system, permease component
EYA88_RS30965	COG1175	transmembrane transport
EYA88_RS30975	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
EYA88_RS30980	COG0363	glucosamine-6-phosphate deaminase activity
EYA88_RS30995	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EYA88_RS31000	COG0765	amino acid transport
EYA88_RS31005	COG1126	abc transporter atp-binding protein
EYA88_RS31020	COG2814	Major facilitator Superfamily
EYA88_RS31045	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
EYA88_RS31045	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
EYA88_RS31075	COG0436	Aminotransferase
EYA88_RS31090	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
EYA88_RS31125	COG0762	integral membrane protein
EYA88_RS31155	COG2226	methyltransferase
EYA88_RS31160	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
EYA88_RS31170	COG0220	tRNA (guanine-N7-)-methyltransferase activity
EYA88_RS31195	COG0635	Involved in the biosynthesis of porphyrin-containing compound
EYA88_RS31205	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
EYA88_RS31215	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
EYA88_RS31230	COG0559	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS31295	COG0859	PFAM glycosyl transferase family 9
EYA88_RS31325	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
EYA88_RS31340	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
EYA88_RS31355	COG1215	transferase activity, transferring glycosyl groups
EYA88_RS31430	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
EYA88_RS31450	COG1773	rubredoxin
EYA88_RS31465	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
EYA88_RS31480	COG1733	regulation of RNA biosynthetic process
EYA88_RS31485	COG0604	alcohol dehydrogenase
EYA88_RS31545	COG1280	lysine exporter protein (LysE YggA)
EYA88_RS31555	COG0584	glycerophosphoryl diester phosphodiesterase
EYA88_RS31570	COG0730	response to heat
EYA88_RS31615	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
EYA88_RS31625	COG1120	ATPase activity
EYA88_RS31630	COG4774	siderophore transport
EYA88_RS31655	COG1529	Aldehyde oxidase and xanthine dehydrogenase
EYA88_RS31690	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
EYA88_RS31700	COG0583	DNA-binding transcription factor activity
EYA88_RS31705	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
EYA88_RS31715	COG0778	Nitroreductase
EYA88_RS31720	COG2814	Major facilitator Superfamily
EYA88_RS31745	COG2814	Major facilitator Superfamily
EYA88_RS31755	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EYA88_RS31790	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS31800	COG0450	alkyl hydroperoxide reductase
EYA88_RS31860	COG4221	oxidoreductase activity
EYA88_RS31865	COG0824	Thioesterase
EYA88_RS31890	COG2885	chlorophyll binding
EYA88_RS31925	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
EYA88_RS31925	COG0517	IMP dehydrogenase activity
EYA88_RS31930	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
EYA88_RS31935	COG2877	3-deoxy-8-phosphooctulonate synthase activity
EYA88_RS31950	COG1045	serine acetyltransferase
EYA88_RS31955	COG3562	capsule polysaccharide
EYA88_RS31965	COG3206	protein involved in exopolysaccharide biosynthesis
EYA88_RS31965	COG0489	protein tyrosine kinase activity
EYA88_RS31970	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
EYA88_RS32020	COG0156	8-amino-7-oxononanoate synthase activity
EYA88_RS32025	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
EYA88_RS32030	COG0604	alcohol dehydrogenase
EYA88_RS32030	COG3321	synthase
EYA88_RS32030	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS32035	COG1368	sulfuric ester hydrolase activity
EYA88_RS32050	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
EYA88_RS32150	COG0586	Pfam SNARE associated Golgi protein
EYA88_RS32155	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
EYA88_RS32190	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
EYA88_RS32200	COG0617	tRNA 3'-terminal CCA addition
EYA88_RS32205	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
EYA88_RS32210	COG1428	Deoxynucleoside kinase
EYA88_RS32220	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
EYA88_RS32260	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
EYA88_RS32265	COG0497	DNA recombination
EYA88_RS32270	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
EYA88_RS32275	COG3164	Protein of unknown function
EYA88_RS32280	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
EYA88_RS32285	COG0312	modulator of DNA gyrase
EYA88_RS32295	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
EYA88_RS32305	COG1017	nitric oxide dioxygenase activity
EYA88_RS32305	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
EYA88_RS32310	COG2096	Adenosyltransferase
EYA88_RS32315	COG0277	FAD linked oxidase domain protein
EYA88_RS32320	COG0277	FAD linked oxidase domain protein
EYA88_RS32325	COG0277	FAD linked oxidase domain protein
EYA88_RS32330	COG0247	lactate metabolic process
EYA88_RS32350	COG3639	organic phosphonate transmembrane transporter activity
EYA88_RS32355	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
EYA88_RS32360	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
EYA88_RS32365	COG3454	Phosphonate metabolism
EYA88_RS32370	COG4778	phosphonate C-P lyase system protein PhnL
EYA88_RS32375	COG4107	phosphonate C-P lyase system protein PhnK
EYA88_RS32380	COG3627	carbon phosphorus lyase activity
EYA88_RS32385	COG3626	phosphonate metabolism
EYA88_RS32395	COG3624	Phosphonate C-P lyase system protein PhnG
EYA88_RS32405	COG2188	Transcriptional regulator
EYA88_RS32410	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
EYA88_RS32440	COG0783	Belongs to the Dps family
EYA88_RS32465	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
EYA88_RS32480	COG0343	queuine tRNA-ribosyltransferase activity
EYA88_RS32490	COG1862	Preprotein translocase
EYA88_RS32495	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
EYA88_RS32500	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
EYA88_RS32515	COG2353	YceI-like domain
EYA88_RS32520	COG2353	YceI-like domain
EYA88_RS32540	COG2995	paraquat-inducible protein a
EYA88_RS32545	COG3008	intermembrane lipid transfer
EYA88_RS32545	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
EYA88_RS32630	COG0069	glutamate synthase activity
EYA88_RS32635	COG0625	glutathione transferase activity
EYA88_RS32645	COG0006	proline dipeptidase activity
EYA88_RS32650	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EYA88_RS32655	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
EYA88_RS32660	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
EYA88_RS32700	COG0588	phosphoglycerate mutase activity
EYA88_RS32710	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
EYA88_RS32725	COG0625	glutathione transferase activity
EYA88_RS32730	COG0625	glutathione transferase activity
EYA88_RS32735	COG1917	Cupin 2, conserved barrel domain protein
EYA88_RS32735	COG4977	sequence-specific DNA binding
EYA88_RS32775	COG0418	dihydroorotase activity
EYA88_RS32785	COG0121	glutamine amidotransferase
EYA88_RS32835	COG1126	abc transporter atp-binding protein
EYA88_RS32840	COG0765	amino acid transport
EYA88_RS32845	COG0765	amino acid transport
EYA88_RS32850	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EYA88_RS32855	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
EYA88_RS32865	COG0583	DNA-binding transcription factor activity
EYA88_RS32870	COG2223	nitrite transmembrane transporter activity
EYA88_RS32890	COG0800	Aldolase
EYA88_RS32905	COG1737	Transcriptional regulator
EYA88_RS32915	COG1981	membrane
EYA88_RS32920	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
EYA88_RS32925	COG1466	dna polymerase III delta subunit
EYA88_RS32955	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
EYA88_RS32960	COG0735	belongs to the Fur family
EYA88_RS32965	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
EYA88_RS32970	COG4266	Belongs to the allantoicase family
EYA88_RS32975	COG1301	dicarboxylic acid transport
EYA88_RS32995	COG0583	DNA-binding transcription factor activity
EYA88_RS33010	COG2814	Major facilitator Superfamily
EYA88_RS33020	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
EYA88_RS33025	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
EYA88_RS33030	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
EYA88_RS33040	COG1385	rRNA (uridine-N3-)-methyltransferase activity
EYA88_RS33070	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
EYA88_RS33075	COG1546	Belongs to the CinA family
EYA88_RS33080	COG0284	orotidine-5'-phosphate decarboxylase activity
EYA88_RS33090	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS33095	COG1172	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS33110	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS33120	COG3734	2-keto-3-deoxy-galactonokinase
EYA88_RS33125	COG1414	Transcriptional regulator
EYA88_RS33145	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
EYA88_RS33150	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
EYA88_RS33155	COG0557	exoribonuclease II activity
EYA88_RS33160	COG3150	esterase
EYA88_RS33165	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
EYA88_RS33175	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
EYA88_RS33180	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
EYA88_RS33185	COG0511	ligase activity, forming carbon-carbon bonds
EYA88_RS33190	COG0439	Biotin carboxylase
EYA88_RS33195	COG2264	protein methyltransferase activity
EYA88_RS33205	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
EYA88_RS33210	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
EYA88_RS33265	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
EYA88_RS33270	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
EYA88_RS33275	COG2095	MarC family integral membrane protein
EYA88_RS33325	COG0142	geranyltranstransferase activity
EYA88_RS33335	COG4536	flavin adenine dinucleotide binding
EYA88_RS33340	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
EYA88_RS33350	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
EYA88_RS33365	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
EYA88_RS33370	COG0494	nUDIX hydrolase
EYA88_RS33380	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
EYA88_RS33405	COG0678	peroxiredoxin activity
EYA88_RS33425	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
EYA88_RS33460	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
EYA88_RS33465	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
EYA88_RS33475	COG3116	cell division
EYA88_RS33495	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
EYA88_RS33500	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS33505	COG0243	molybdopterin cofactor binding
EYA88_RS33550	COG1024	Enoyl-CoA hydratase
EYA88_RS33560	COG0183	Belongs to the thiolase family
EYA88_RS33565	COG1024	Enoyl-CoA hydratase
EYA88_RS33570	COG2050	protein possibly involved in aromatic compounds catabolism
EYA88_RS33580	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
EYA88_RS33590	COG2967	ApaG domain
EYA88_RS33600	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
EYA88_RS33605	COG0546	phosphoglycolate phosphatase activity
EYA88_RS33620	COG0512	Glutamine amidotransferase of anthranilate synthase
EYA88_RS33640	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
EYA88_RS33655	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
EYA88_RS33660	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EYA88_RS33690	COG0012	GTP binding
EYA88_RS33735	COG0584	glycerophosphoryl diester phosphodiesterase
EYA88_RS33750	COG0488	(ABC) transporter
EYA88_RS33765	COG1335	isochorismatase
EYA88_RS33770	COG0006	proline dipeptidase activity
EYA88_RS33800	COG2890	protein-(glutamine-N5) methyltransferase activity
EYA88_RS33805	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
EYA88_RS33815	COG3384	dioxygenase
EYA88_RS33820	COG0531	amino acid
EYA88_RS33825	COG1278	Cold shock
EYA88_RS33835	COG0443	Heat shock 70 kDa protein
EYA88_RS33915	COG0308	aminopeptidase N
EYA88_RS34075	COG2969	positive regulation of protein catabolic process
EYA88_RS34080	COG0625	glutathione transferase activity
EYA88_RS34085	COG2857	Cytochrome c1
EYA88_RS34090	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
EYA88_RS34095	COG0723	plastoquinol--plastocyanin reductase activity
EYA88_RS34100	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
EYA88_RS34105	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EYA88_RS34115	COG0805	protein transport
EYA88_RS34165	COG2095	MarC family integral membrane protein
EYA88_RS34175	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
EYA88_RS34200	COG0842	Transport permease protein
EYA88_RS34205	COG1131	(ABC) transporter
EYA88_RS34230	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
EYA88_RS34235	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
EYA88_RS34240	COG1127	ABC transporter
EYA88_RS34265	COG4178	(ABC) transporter
EYA88_RS34280	COG1115	amino acid carrier protein
EYA88_RS34295	COG0070	glutamate synthase
EYA88_RS34295	COG0069	glutamate synthase activity
EYA88_RS34295	COG0067	glutamate synthase
EYA88_RS34310	COG0584	glycerophosphoryl diester phosphodiesterase
EYA88_RS34315	COG3842	ATPase activity
EYA88_RS34320	COG0395	ABC-type sugar transport system, permease component
EYA88_RS34325	COG1175	transmembrane transport
EYA88_RS34335	COG0232	Belongs to the dGTPase family. Type 2 subfamily
EYA88_RS34390	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
EYA88_RS34395	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
EYA88_RS34400	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
EYA88_RS34405	COG1333	cytochrome c biogenesis protein
EYA88_RS34425	COG4232	protein-disulfide reductase activity
EYA88_RS34470	COG0201	protein transport
EYA88_RS34600	COG0514	ATP-dependent DNA helicase (RecQ)
EYA88_RS34640	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
EYA88_RS34725	COG3396	Phenylacetate-CoA oxygenase
EYA88_RS34730	COG3460	Phenylacetate-CoA oxygenase
EYA88_RS34735	COG3396	Phenylacetate-CoA oxygenase
EYA88_RS34740	COG2151	metal-sulfur cluster biosynthetic enzyme
EYA88_RS34745	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
EYA88_RS34765	COG1522	sequence-specific DNA binding
EYA88_RS34795	COG0280	phosphate acetyltransferase
EYA88_RS34795	COG0281	malic enzyme
EYA88_RS34805	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
EYA88_RS34810	COG1881	PFAM PEBP family protein
EYA88_RS34825	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
EYA88_RS34845	COG3047	cAMP biosynthetic process
EYA88_RS34850	COG0583	DNA-binding transcription factor activity
EYA88_RS34855	COG2814	Major facilitator Superfamily
EYA88_RS34860	COG1280	lysine exporter protein (LysE YggA)
EYA88_RS34865	COG2084	Dehydrogenase
EYA88_RS34910	COG1113	amino acid transport
EYA88_RS34935	COG5314	conjugation
EYA88_RS34960	COG2823	Periplasmic or secreted lipoprotein
EYA88_RS34965	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
EYA88_RS34990	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EYA88_RS35000	COG1522	sequence-specific DNA binding
EYA88_RS35005	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
EYA88_RS35040	COG2070	2-Nitropropane dioxygenase
EYA88_RS35060	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
EYA88_RS35065	COG1950	PFAM Membrane protein of
EYA88_RS35090	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
EYA88_RS35095	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
EYA88_RS35115	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
EYA88_RS35120	COG0745	RESPONSE REGULATOR receiver
EYA88_RS35130	COG2201	protein-glutamate methylesterase activity
EYA88_RS35140	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
EYA88_RS35160	COG2201	protein-glutamate methylesterase activity
EYA88_RS35165	COG1360	Flagellar Motor Protein
EYA88_RS35190	COG0438	transferase activity, transferring glycosyl groups
EYA88_RS35205	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
EYA88_RS35210	COG0561	phosphatase activity
EYA88_RS35220	COG0519	Catalyzes the synthesis of GMP from XMP
EYA88_RS35260	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
EYA88_RS35275	COG1028	Short-chain dehydrogenase reductase Sdr
EYA88_RS35350	COG2267	carboxylic ester hydrolase activity
EYA88_RS35375	COG3397	chitin binding
EYA88_RS35400	COG3245	cytochrome
EYA88_RS35405	COG0210	DNA helicase
EYA88_RS35425	COG0673	inositol 2-dehydrogenase activity
EYA88_RS35445	COG0509	glycine decarboxylation via glycine cleavage system
EYA88_RS35465	COG1760	l-serine dehydratase
EYA88_RS35495	COG1012	belongs to the aldehyde dehydrogenase family
EYA88_RS35505	COG4302	ethanolamine ammonia-lyase activity
EYA88_RS35510	COG4303	Ethanolamine ammonia lyase large subunit
EYA88_RS35515	COG0531	amino acid
EYA88_RS35535	COG0668	transmembrane transport
EYA88_RS35555	COG0789	Transcriptional regulator
EYA88_RS35565	COG0277	FAD linked oxidase domain protein
EYA88_RS35580	COG0436	Aminotransferase
EYA88_RS35600	COG1960	acyl-CoA dehydrogenase activity
EYA88_RS35615	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
EYA88_RS35615	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
EYA88_RS35615	COG0506	proline dehydrogenase activity
EYA88_RS35635	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
EYA88_RS35655	COG1832	CoA-binding protein
EYA88_RS35675	COG0318	PFAM AMP-dependent synthetase and ligase
EYA88_RS35715	COG0356	it plays a direct role in the translocation of protons across the membrane
EYA88_RS35730	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
EYA88_RS35735	COG1475	DNA binding
EYA88_RS35740	COG1192	Involved in chromosome partitioning
EYA88_RS35785	COG0559	Belongs to the binding-protein-dependent transport system permease family
EYA88_RS35815	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
EYA88_RS35830	COG0583	DNA-binding transcription factor activity
EYA88_RS35845	COG1522	sequence-specific DNA binding
EYA88_RS35850	COG3186	Phenylalanine-4-hydroxylase
EYA88_RS35870	COG0642	Histidine kinase
EYA88_RS35890	COG1902	pentaerythritol trinitrate reductase activity
EYA88_RS35895	COG0519	Catalyzes the synthesis of GMP from XMP
EYA88_RS35895	COG0518	GMP synthase (glutamine-hydrolyzing) activity