AQ475_RS00010	SM00480	DNA polymerase III beta subunit
AQ475_RS00015	SM00387	Histidine kinase-like ATPases
AQ475_RS00015	SM00433	TopoisomeraseII
AQ475_RS00025	SM01060	AQ475_RS00025
AQ475_RS00090	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS00155	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS00160	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS00165	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS00190	SM00448	cheY-homologous receiver domain
AQ475_RS00190	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS00195	SM00387	Histidine kinase-like ATPases
AQ475_RS00195	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS00205	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS00220	SM00422	helix_turn_helix, mercury resistance
AQ475_RS00280	SM00347	helix_turn_helix multiple antibiotic resistance protein
AQ475_RS00345	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS00360	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AQ475_RS00365	SM00411	bacterial (prokaryotic) histone like domain
AQ475_RS00385	SM00347	helix_turn_helix multiple antibiotic resistance protein
AQ475_RS00400	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
AQ475_RS00410	SM00387	Histidine kinase-like ATPases
AQ475_RS00410	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS00415	SM00448	cheY-homologous receiver domain
AQ475_RS00415	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS00435	SM00344	helix_turn_helix ASNC type
AQ475_RS00440	SM01118	AQ475_RS00440
AQ475_RS00460	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS00465	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS00500	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS00505	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS00510	SM01228	AQ475_RS00510
AQ475_RS00525	SM00470	ParB-like nuclease domain
AQ475_RS00570	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS00585	SM00062	Bacterial periplasmic substrate-binding proteins
AQ475_RS00595	SM00487	DEAD-like helicases superfamily
AQ475_RS00595	SM00490	helicase superfamily c-terminal domain
AQ475_RS00635	SM00062	Bacterial periplasmic substrate-binding proteins
AQ475_RS00650	SM00422	helix_turn_helix, mercury resistance
AQ475_RS00710	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS00850	SM00028	Tetratricopeptide repeats
AQ475_RS00855	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS00855	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS00955	SM00528	Domain in histone-like proteins of HNS family
AQ475_RS00990	SM00448	cheY-homologous receiver domain
AQ475_RS00995	SM00073	Histidine Phosphotransfer domain
AQ475_RS00995	SM00260	Two component signalling adaptor domain
AQ475_RS00995	SM00387	Histidine kinase-like ATPases
AQ475_RS00995	SM01231	AQ475_RS00995
AQ475_RS01000	SM00260	Two component signalling adaptor domain
AQ475_RS01005	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS01005	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS01010	SM00138	Methyltransferase, chemotaxis proteins 
AQ475_RS01020	SM00448	cheY-homologous receiver domain
AQ475_RS01025	SM00448	cheY-homologous receiver domain
AQ475_RS01065	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS01065	SM00962	SRP54-type protein, GTPase domain
AQ475_RS01080	SM00996	S-adenosyl-L-homocysteine hydrolase
AQ475_RS01080	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
AQ475_RS01125	SM00528	Domain in histone-like proteins of HNS family
AQ475_RS01135	SM00344	helix_turn_helix ASNC type
AQ475_RS01145	SM00849	Metallo-beta-lactamase superfamily
AQ475_RS01170	SM00749	bacterial OsmY and nodulation domain
AQ475_RS01255	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AQ475_RS01275	SM00919	Malic enzyme, NAD binding domain
AQ475_RS01275	SM01274	AQ475_RS01275
AQ475_RS01295	SM00344	helix_turn_helix ASNC type
AQ475_RS01410	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AQ475_RS01410	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AQ475_RS01415	SM00649	Ribosomal protein L11/L12
AQ475_RS01440	SM00663	RNA polymerase I subunit A N-terminus
AQ475_RS01445	SM00341	Helicase and RNase D C-terminal
AQ475_RS01445	SM00487	DEAD-like helicases superfamily
AQ475_RS01445	SM00490	helicase superfamily c-terminal domain
AQ475_RS01445	SM00956	AQ475_RS01445
AQ475_RS01460	SM00838	Elongation factor G C-terminus
AQ475_RS01460	SM00889	Elongation factor G, domain IV
AQ475_RS01470	SM01403	AQ475_RS01470
AQ475_RS01490	SM01382	AQ475_RS01490
AQ475_RS01490	SM01383	AQ475_RS01490
AQ475_RS01505	SM00322	K homology RNA-binding domain
AQ475_RS01525	SM01374	AQ475_RS01525
AQ475_RS01580	SM00316	Ribosomal protein S1-like RNA-binding domain
AQ475_RS01600	SM00363	S4 RNA-binding domain
AQ475_RS01600	SM01390	AQ475_RS01600
AQ475_RS01605	SM00662	RNA polymerases D
AQ475_RS01625	SM01004	Delta-aminolevulinic acid dehydratase
AQ475_RS01670	SM01219	AQ475_RS01670
AQ475_RS01695	SM00965	Secretin and TonB N terminus short domain
AQ475_RS01710	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AQ475_RS01730	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS01745	SM01321	AQ475_RS01745
AQ475_RS01775	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS01800	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS01830	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS01925	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AQ475_RS02020	SM00857	Resolvase, N terminal domain
AQ475_RS02040	SM00487	DEAD-like helicases superfamily
AQ475_RS02115	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS02115	SM01086	C-terminal, D2-small domain, of ClpB protein
AQ475_RS02155	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS02180	SM00769	Water Stress and Hypersensitive response
AQ475_RS02225	SM00357	Cold shock protein domain
AQ475_RS02255	SM00937	AQ475_RS02255
AQ475_RS02285	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS02340	SM00986	Uracil DNA glycosylase superfamily
AQ475_RS02340	SM00987	UreE urease accessory protein, C-terminal domain 
AQ475_RS02345	SM01118	AQ475_RS02345
AQ475_RS02385	SM00925	MltA specific insert domain
AQ475_RS02445	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AQ475_RS02530	SM00842	Cell division protein FtsA
AQ475_RS02535	SM00864	Tubulin/FtsZ family, GTPase domain
AQ475_RS02535	SM00865	Tubulin/FtsZ family, C-terminal domain
AQ475_RS02555	SM00957	SecA DEAD-like domain
AQ475_RS02555	SM00958	SecA preprotein cross-linking domain
AQ475_RS02565	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS02600	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS02605	SM01091	Transporter associated domain
AQ475_RS02720	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS02760	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AQ475_RS02790	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS02790	SM00962	SRP54-type protein, GTPase domain
AQ475_RS02790	SM00963	SRP54-type protein, helical bundle domain
AQ475_RS02805	SM00644	AQ475_RS02805
AQ475_RS02850	SM00878	Biotin carboxylase C-terminal domain
AQ475_RS02885	SM00955	AQ475_RS02885
AQ475_RS02910	SM00346	helix_turn_helix isocitrate lyase regulation
AQ475_RS02935	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS02945	SM00822	AQ475_RS02945
AQ475_RS02955	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AQ475_RS02975	SM00919	Malic enzyme, NAD binding domain
AQ475_RS02975	SM01274	AQ475_RS02975
AQ475_RS03010	SM00861	Transketolase, pyrimidine binding domain
AQ475_RS03015	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AQ475_RS03025	SM01116	AQ475_RS03025
AQ475_RS03030	SM00947	Carbonic anhydrase
AQ475_RS03040	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AQ475_RS03040	SM00895	AQ475_RS03040
AQ475_RS03150	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AQ475_RS03155	SM00062	Bacterial periplasmic substrate-binding proteins
AQ475_RS03170	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS03215	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS03235	SM00363	S4 RNA-binding domain
AQ475_RS03245	SM00855	Phosphoglycerate mutase family
AQ475_RS03260	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS03265	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AQ475_RS03280	SM00798	AICARFT/IMPCHase bienzyme
AQ475_RS03280	SM00851	MGS-like domain
AQ475_RS03300	SM01011	Aminopeptidase P, N-terminal domain
AQ475_RS03330	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AQ475_RS03330	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AQ475_RS03355	SM00981	AQ475_RS03355
AQ475_RS03395	SM00867	YceI-like domain 
AQ475_RS03400	SM00867	YceI-like domain 
AQ475_RS03420	SM01323	AQ475_RS03420
AQ475_RS03435	SM00487	DEAD-like helicases superfamily
AQ475_RS03435	SM00490	helicase superfamily c-terminal domain
AQ475_RS03540	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS03560	SM00363	S4 RNA-binding domain
AQ475_RS03580	SM00271	DnaJ molecular chaperone homology domain
AQ475_RS03640	SM00853	MutL C terminal dimerisation domain
AQ475_RS03640	SM01340	AQ475_RS03640
AQ475_RS03715	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS03745	SM00822	AQ475_RS03745
AQ475_RS03745	SM00823	Phosphopantetheine attachment site
AQ475_RS03745	SM00825	Beta-ketoacyl synthase
AQ475_RS03745	SM00826	AQ475_RS03745
AQ475_RS03745	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AQ475_RS03745	SM00829	Enoylreductase
AQ475_RS03745	SM01294	AQ475_RS03745
AQ475_RS03790	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS03805	SM00226	Low molecular weight phosphatase family
AQ475_RS03995	SM00346	helix_turn_helix isocitrate lyase regulation
AQ475_RS04010	SM00849	Metallo-beta-lactamase superfamily
AQ475_RS04070	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS04085	SM01092	CO dehydrogenase flavoprotein C-terminal domain
AQ475_RS04090	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AQ475_RS04110	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS04185	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS04190	SM00849	Metallo-beta-lactamase superfamily
AQ475_RS04225	SM00829	Enoylreductase
AQ475_RS04240	SM00883	Chaperonin 10 Kd subunit
AQ475_RS04270	SM00732	Likely ribonuclease with RNase H fold.
AQ475_RS04290	SM00563	Phosphate acyltransferases
AQ475_RS04325	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS04430	SM00988	UreE urease accessory protein, N-terminal domain
AQ475_RS04455	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS04490	SM00450	Rhodanese Homology Domain
AQ475_RS04495	SM00650	Ribosomal RNA adenine dimethylases
AQ475_RS04505	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS04540	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS04560	SM00829	Enoylreductase
AQ475_RS04680	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS04690	SM00062	Bacterial periplasmic substrate-binding proteins
AQ475_RS04730	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS04740	SM00463	Small MutS-related domain
AQ475_RS04750	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS04750	SM00843	AQ475_RS04750
AQ475_RS04760	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS04875	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS04895	SM00072	Guanylate kinase homologues.
AQ475_RS04900	SM01409	AQ475_RS04900
AQ475_RS04905	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AQ475_RS04905	SM00954	Region found in RelA / SpoT proteins
AQ475_RS04935	SM00357	Cold shock protein domain
AQ475_RS04940	SM00479	AQ475_RS04940
AQ475_RS04945	SM00830	Chorismate mutase type II
AQ475_RS05070	SM00028	Tetratricopeptide repeats
AQ475_RS05070	SM01043	Bacterial transcriptional activator domain
AQ475_RS05085	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AQ475_RS05085	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AQ475_RS05090	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AQ475_RS05205	SM00434	DNA Topoisomerase IV
AQ475_RS05220	SM00830	Chorismate mutase type II
AQ475_RS05235	SM00316	Ribosomal protein S1-like RNA-binding domain
AQ475_RS05240	SM00411	bacterial (prokaryotic) histone like domain
AQ475_RS05250	SM00028	Tetratricopeptide repeats
AQ475_RS05255	SM00984	UDP binding domain
AQ475_RS05300	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS05300	SM00930	AQ475_RS05300
AQ475_RS05315	SM00893	Electron transfer flavoprotein domain
AQ475_RS05320	SM00893	Electron transfer flavoprotein domain
AQ475_RS05335	SM00344	helix_turn_helix ASNC type
AQ475_RS05340	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS05405	SM00479	AQ475_RS05405
AQ475_RS05410	SM00852	Probable molybdopterin binding domain
AQ475_RS05435	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS05450	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS05465	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AQ475_RS05525	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS05585	SM00852	Probable molybdopterin binding domain
AQ475_RS05595	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS05600	SM00316	Ribosomal protein S1-like RNA-binding domain
AQ475_RS05605	SM00363	S4 RNA-binding domain
AQ475_RS05655	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AQ475_RS05660	SM00822	AQ475_RS05660
AQ475_RS05670	SM00825	Beta-ketoacyl synthase
AQ475_RS05695	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AQ475_RS05705	SM00838	Elongation factor G C-terminus
AQ475_RS05715	SM00358	Double-stranded RNA binding motif
AQ475_RS05715	SM00535	Ribonuclease III family
AQ475_RS05745	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS05745	SM00448	cheY-homologous receiver domain
AQ475_RS05750	SM00841	Elongation factor P, C-terminal
AQ475_RS05750	SM01185	AQ475_RS05750
AQ475_RS05760	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AQ475_RS05760	SM00465	GIY-YIG type nucleases (URI domain)
AQ475_RS05830	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS05885	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS05915	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS05920	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS05965	SM00062	Bacterial periplasmic substrate-binding proteins
AQ475_RS06030	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS06045	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS06045	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS06050	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS06055	SM00100	Cyclic nucleotide-monophosphate binding domain
AQ475_RS06055	SM00419	helix_turn_helix, cAMP Regulatory protein
AQ475_RS06145	SM00421	helix_turn_helix, Lux Regulon
AQ475_RS06170	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AQ475_RS06170	SM00866	AQ475_RS06170
AQ475_RS06210	SM01230	AQ475_RS06210
AQ475_RS06315	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS06315	SM00487	DEAD-like helicases superfamily
AQ475_RS06315	SM00490	helicase superfamily c-terminal domain
AQ475_RS06315	SM00847	Helicase associated domain (HA2)  Add an annotation
AQ475_RS06335	SM00852	Probable molybdopterin binding domain
AQ475_RS06340	SM00450	Rhodanese Homology Domain
AQ475_RS06345	SM01230	AQ475_RS06345
AQ475_RS06350	SM00387	Histidine kinase-like ATPases
AQ475_RS06350	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS06355	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS06355	SM00448	cheY-homologous receiver domain
AQ475_RS06380	SM00421	helix_turn_helix, Lux Regulon
AQ475_RS06380	SM00448	cheY-homologous receiver domain
AQ475_RS06385	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS06385	SM00387	Histidine kinase-like ATPases
AQ475_RS06405	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AQ475_RS06445	SM00421	helix_turn_helix, Lux Regulon
AQ475_RS06445	SM00448	cheY-homologous receiver domain
AQ475_RS06450	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AQ475_RS06450	SM00091	PAS domain
AQ475_RS06450	SM00387	Histidine kinase-like ATPases
AQ475_RS06450	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS06480	SM00346	helix_turn_helix isocitrate lyase regulation
AQ475_RS06500	SM00226	Low molecular weight phosphatase family
AQ475_RS06525	SM00271	DnaJ molecular chaperone homology domain
AQ475_RS06555	SM00937	AQ475_RS06555
AQ475_RS06585	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS06595	SM00849	Metallo-beta-lactamase superfamily
AQ475_RS06620	SM01192	AQ475_RS06620
AQ475_RS06620	SM01193	AQ475_RS06620
AQ475_RS06655	SM00481	DNA polymerase alpha chain like domain
AQ475_RS06680	SM01130	AQ475_RS06680
AQ475_RS06690	SM00849	Metallo-beta-lactamase superfamily
AQ475_RS06695	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
AQ475_RS06755	SM00028	Tetratricopeptide repeats
AQ475_RS06760	SM00840	AQ475_RS06760
AQ475_RS06765	SM00478	endonuclease III
AQ475_RS06775	SM00977	TilS substrate C-terminal domain
AQ475_RS06795	SM00869	Autotransporter beta-domain
AQ475_RS06820	SM00823	Phosphopantetheine attachment site
AQ475_RS06835	SM00823	Phosphopantetheine attachment site
AQ475_RS06835	SM01294	AQ475_RS06835
AQ475_RS06870	SM00861	Transketolase, pyrimidine binding domain
AQ475_RS06930	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AQ475_RS06960	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS07010	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS07050	SM00487	DEAD-like helicases superfamily
AQ475_RS07050	SM00490	helicase superfamily c-terminal domain
AQ475_RS07070	SM00986	Uracil DNA glycosylase superfamily
AQ475_RS07070	SM00987	UreE urease accessory protein, C-terminal domain 
AQ475_RS07090	SM01005	Alanine racemase, C-terminal domain
AQ475_RS07095	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS07105	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS07115	SM00155	Phospholipase D. Active site motifs.
AQ475_RS07150	SM00968	SMC proteins Flexible Hinge Domain
AQ475_RS07155	SM00771	ZipA, C-terminal domain (FtsZ-binding)
AQ475_RS07165	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AQ475_RS07165	SM00292	breast cancer carboxy-terminal domain
AQ475_RS07165	SM00532	Ligase N family
AQ475_RS07175	SM00363	S4 RNA-binding domain
AQ475_RS07180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AQ475_RS07225	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AQ475_RS07235	SM00935	Outer membrane protein (OmpH-like)
AQ475_RS07275	SM00944	Pro-kumamolisin, activation domain
AQ475_RS07295	SM00244	prohibitin homologues
AQ475_RS07335	SM00116	Domain in cystathionine beta-synthase and other proteins.
AQ475_RS07335	SM01240	AQ475_RS07335
AQ475_RS07375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AQ475_RS07375	SM00895	AQ475_RS07375
AQ475_RS07495	SM00487	DEAD-like helicases superfamily
AQ475_RS07495	SM00490	helicase superfamily c-terminal domain
AQ475_RS07495	SM00982	AQ475_RS07495
AQ475_RS07495	SM01058	CarD-like/TRCF domain
AQ475_RS07520	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS07520	SM00387	Histidine kinase-like ATPases
AQ475_RS07520	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS07525	SM00448	cheY-homologous receiver domain
AQ475_RS07525	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS07585	SM00155	Phospholipase D. Active site motifs.
AQ475_RS07605	SM00421	helix_turn_helix, Lux Regulon
AQ475_RS07615	SM00347	helix_turn_helix multiple antibiotic resistance protein
AQ475_RS07635	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS07635	SM00994	ClpX C4-type zinc finger
AQ475_RS07635	SM01086	C-terminal, D2-small domain, of ClpB protein
AQ475_RS07640	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS07640	SM00464	Found in ATP-dependent protease La (LON)
AQ475_RS07685	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS07710	SM01211	AQ475_RS07710
AQ475_RS07775	SM00886	Stress responsive A/B Barrel Domain
AQ475_RS07785	SM00829	Enoylreductase
AQ475_RS07835	SM00248	ankyrin repeats
AQ475_RS07875	SM00870	AQ475_RS07875
AQ475_RS07880	SM00257	Lysin motif
AQ475_RS07950	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS07970	SM00670	Large family of predicted nucleotide-binding domains
AQ475_RS08035	SM00852	Probable molybdopterin binding domain
AQ475_RS08060	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08060	SM01086	C-terminal, D2-small domain, of ClpB protein
AQ475_RS08075	SM00422	helix_turn_helix, mercury resistance
AQ475_RS08115	SM00422	helix_turn_helix, mercury resistance
AQ475_RS08125	SM00357	Cold shock protein domain
AQ475_RS08125	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08125	SM00959	Rho termination factor, N-terminal domain
AQ475_RS08145	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08155	SM00493	AQ475_RS08155
AQ475_RS08175	SM00257	Lysin motif
AQ475_RS08205	SM00562	AQ475_RS08205
AQ475_RS08215	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS08235	SM00564	beta-propeller repeat
AQ475_RS08240	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08255	SM00244	prohibitin homologues
AQ475_RS08260	SM00244	prohibitin homologues
AQ475_RS08275	SM00788	Adenylosuccinate synthetase
AQ475_RS08290	SM00316	Ribosomal protein S1-like RNA-binding domain
AQ475_RS08290	SM00732	Likely ribonuclease with RNase H fold.
AQ475_RS08305	SM00491	AQ475_RS08305
AQ475_RS08315	SM00363	S4 RNA-binding domain
AQ475_RS08345	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS08390	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08400	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08440	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08465	SM00849	Metallo-beta-lactamase superfamily
AQ475_RS08470	SM00091	PAS domain
AQ475_RS08470	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08480	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS08510	SM00116	Domain in cystathionine beta-synthase and other proteins.
AQ475_RS08550	SM00354	helix_turn _helix lactose operon repressor
AQ475_RS08580	SM00344	helix_turn_helix ASNC type
AQ475_RS08655	SM00900	AQ475_RS08655
AQ475_RS08685	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08690	SM00710	Parallel beta-helix repeats
AQ475_RS08690	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
AQ475_RS08705	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08720	SM01120	AQ475_RS08720
AQ475_RS08740	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS08755	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08770	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS08865	SM00944	Pro-kumamolisin, activation domain
AQ475_RS08870	SM00824	Thioesterase
AQ475_RS08885	SM00823	Phosphopantetheine attachment site
AQ475_RS08885	SM00824	Thioesterase
AQ475_RS08900	SM00822	AQ475_RS08900
AQ475_RS08900	SM00823	Phosphopantetheine attachment site
AQ475_RS08900	SM00825	Beta-ketoacyl synthase
AQ475_RS08905	SM00823	Phosphopantetheine attachment site
AQ475_RS08910	SM00822	AQ475_RS08910
AQ475_RS08910	SM00823	Phosphopantetheine attachment site
AQ475_RS08910	SM00825	Beta-ketoacyl synthase
AQ475_RS08930	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS08940	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS08950	SM00260	Two component signalling adaptor domain
AQ475_RS08955	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS08990	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09010	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AQ475_RS09010	SM00895	AQ475_RS09010
AQ475_RS09060	SM00347	helix_turn_helix multiple antibiotic resistance protein
AQ475_RS09120	SM00495	Chitin-binding domain type 3
AQ475_RS09140	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09155	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AQ475_RS09205	SM00823	Phosphopantetheine attachment site
AQ475_RS09210	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09235	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09245	SM00923	MbtH-like protein
AQ475_RS09280	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09290	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS09310	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09360	SM00062	Bacterial periplasmic substrate-binding proteins
AQ475_RS09390	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09445	SM00763	PrkA AAA domain
AQ475_RS09450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS09450	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS09460	SM00354	helix_turn _helix lactose operon repressor
AQ475_RS09470	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09490	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09530	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09600	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09670	SM00062	Bacterial periplasmic substrate-binding proteins
AQ475_RS09670	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AQ475_RS09685	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AQ475_RS09685	SM00895	AQ475_RS09685
AQ475_RS09695	SM00644	AQ475_RS09695
AQ475_RS09700	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AQ475_RS09705	SM00316	Ribosomal protein S1-like RNA-binding domain
AQ475_RS09705	SM00357	Cold shock protein domain
AQ475_RS09705	SM00955	AQ475_RS09705
AQ475_RS09720	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS09720	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS09780	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS09795	SM00028	Tetratricopeptide repeats
AQ475_RS09825	SM00858	AQ475_RS09825
AQ475_RS09890	SM00861	Transketolase, pyrimidine binding domain
AQ475_RS09900	SM00347	helix_turn_helix multiple antibiotic resistance protein
AQ475_RS09935	SM00316	Ribosomal protein S1-like RNA-binding domain
AQ475_RS09935	SM00322	K homology RNA-binding domain
AQ475_RS09945	SM00363	S4 RNA-binding domain
AQ475_RS10025	SM00422	helix_turn_helix, mercury resistance
AQ475_RS10030	SM00411	bacterial (prokaryotic) histone like domain
AQ475_RS10035	SM00873	B3/4 domain
AQ475_RS10035	SM00874	tRNA synthetase B5 domain
AQ475_RS10035	SM00896	Ferredoxin-fold anticodon binding domain
AQ475_RS10060	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AQ475_RS10070	SM00954	Region found in RelA / SpoT proteins
AQ475_RS10115	SM00882	Coenzyme A transferase
AQ475_RS10120	SM00882	Coenzyme A transferase
AQ475_RS10125	SM00421	helix_turn_helix, Lux Regulon
AQ475_RS10140	SM00822	AQ475_RS10140
AQ475_RS10155	SM00563	Phosphate acyltransferases
AQ475_RS10160	SM00116	Domain in cystathionine beta-synthase and other proteins.
AQ475_RS10225	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS10260	SM00387	Histidine kinase-like ATPases
AQ475_RS10260	SM01080	AQ475_RS10260
AQ475_RS10270	SM00448	cheY-homologous receiver domain
AQ475_RS10270	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS10310	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS10335	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS10340	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS10370	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AQ475_RS10390	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AQ475_RS10460	SM00421	helix_turn_helix, Lux Regulon
AQ475_RS10460	SM00448	cheY-homologous receiver domain
AQ475_RS10465	SM00387	Histidine kinase-like ATPases
AQ475_RS10465	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS10465	SM00448	cheY-homologous receiver domain
AQ475_RS10470	SM00972	Spore Coat Protein U domain
AQ475_RS10485	SM00972	Spore Coat Protein U domain
AQ475_RS10490	SM00972	Spore Coat Protein U domain
AQ475_RS10495	SM00972	Spore Coat Protein U domain
AQ475_RS10660	SM00060	Fibronectin type 3 domain
AQ475_RS10665	SM00528	Domain in histone-like proteins of HNS family
AQ475_RS10720	SM00857	Resolvase, N terminal domain
AQ475_RS10750	SM00257	Lysin motif
AQ475_RS10790	SM00855	Phosphoglycerate mutase family
AQ475_RS10825	SM00387	Histidine kinase-like ATPases
AQ475_RS10825	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS10830	SM00448	cheY-homologous receiver domain
AQ475_RS10830	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS10840	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS10870	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS10880	SM01103	AQ475_RS10880
AQ475_RS10895	SM00851	MGS-like domain
AQ475_RS10895	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AQ475_RS10905	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AQ475_RS10910	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS10925	SM00257	Lysin motif
AQ475_RS10930	SM00849	Metallo-beta-lactamase superfamily
AQ475_RS10945	SM00479	AQ475_RS10945
AQ475_RS10975	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AQ475_RS11065	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AQ475_RS11085	SM00822	AQ475_RS11085
AQ475_RS11120	SM00267	diguanylate cyclase
AQ475_RS11145	SM00354	helix_turn _helix lactose operon repressor
AQ475_RS11175	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS11240	SM00052	Putative diguanylate phosphodiesterase
AQ475_RS11290	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS11295	SM00344	helix_turn_helix ASNC type
AQ475_RS11325	SM00346	helix_turn_helix isocitrate lyase regulation
AQ475_RS11355	SM00052	Putative diguanylate phosphodiesterase
AQ475_RS11355	SM00267	diguanylate cyclase
AQ475_RS11425	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS11490	SM00421	helix_turn_helix, Lux Regulon
AQ475_RS11505	SM00631	AQ475_RS11505
AQ475_RS11535	SM00855	Phosphoglycerate mutase family
AQ475_RS11625	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AQ475_RS11630	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AQ475_RS11675	SM00829	Enoylreductase
AQ475_RS11680	SM00316	Ribosomal protein S1-like RNA-binding domain
AQ475_RS11680	SM00322	K homology RNA-binding domain
AQ475_RS11685	SM01387	AQ475_RS11685
AQ475_RS11705	SM00947	Carbonic anhydrase
AQ475_RS11715	SM00917	LeuA allosteric (dimerisation) domain
AQ475_RS11815	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AQ475_RS11845	SM00448	cheY-homologous receiver domain
AQ475_RS11845	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS11850	SM00387	Histidine kinase-like ATPases
AQ475_RS11850	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS11880	SM00829	Enoylreductase
AQ475_RS11885	SM00851	MGS-like domain
AQ475_RS11905	SM01209	AQ475_RS11905
AQ475_RS11905	SM01210	AQ475_RS11905
AQ475_RS11935	SM00316	Ribosomal protein S1-like RNA-binding domain
AQ475_RS12045	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS12050	SM00481	DNA polymerase alpha chain like domain
AQ475_RS12055	SM00450	Rhodanese Homology Domain
AQ475_RS12065	SM00487	DEAD-like helicases superfamily
AQ475_RS12065	SM00490	helicase superfamily c-terminal domain
AQ475_RS12095	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS12095	SM00843	AQ475_RS12095
AQ475_RS12125	SM00478	endonuclease III
AQ475_RS12150	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS12195	SM00986	Uracil DNA glycosylase superfamily
AQ475_RS12195	SM00987	UreE urease accessory protein, C-terminal domain 
AQ475_RS12205	SM00387	Histidine kinase-like ATPases
AQ475_RS12210	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AQ475_RS12240	SM00052	Putative diguanylate phosphodiesterase
AQ475_RS12240	SM00267	diguanylate cyclase
AQ475_RS12275	SM00434	DNA Topoisomerase IV
AQ475_RS12280	SM00387	Histidine kinase-like ATPases
AQ475_RS12280	SM00433	TopoisomeraseII
AQ475_RS12285	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS12310	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS12530	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS12680	SM00954	Region found in RelA / SpoT proteins
AQ475_RS12775	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS12790	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS12790	SM00387	Histidine kinase-like ATPases
AQ475_RS12790	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS12795	SM00448	cheY-homologous receiver domain
AQ475_RS12795	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS12810	SM00062	Bacterial periplasmic substrate-binding proteins
AQ475_RS12825	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS12845	SM00938	Nitrogen regulatory protein P-II
AQ475_RS12890	SM00028	Tetratricopeptide repeats
AQ475_RS12915	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS12920	SM00972	Spore Coat Protein U domain
AQ475_RS12925	SM00972	Spore Coat Protein U domain
AQ475_RS13065	SM00855	Phosphoglycerate mutase family
AQ475_RS13080	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS13270	SM00487	DEAD-like helicases superfamily
AQ475_RS13280	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS13285	SM01007	Class II Aldolase and Adducin N-terminal domain
AQ475_RS13290	SM01130	AQ475_RS13290
AQ475_RS13365	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS13370	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS13450	SM00904	Riboflavin kinase
AQ475_RS13490	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS13490	SM01086	C-terminal, D2-small domain, of ClpB protein
AQ475_RS13500	SM00357	Cold shock protein domain
AQ475_RS13510	SM01329	AQ475_RS13510
AQ475_RS13525	SM00838	Elongation factor G C-terminus
AQ475_RS13525	SM00889	Elongation factor G, domain IV
AQ475_RS13535	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AQ475_RS13535	SM00866	AQ475_RS13535
AQ475_RS13560	SM00052	Putative diguanylate phosphodiesterase
AQ475_RS13585	SM00100	Cyclic nucleotide-monophosphate binding domain
AQ475_RS13585	SM00419	helix_turn_helix, cAMP Regulatory protein
AQ475_RS13675	SM01207	AQ475_RS13675
AQ475_RS13710	SM00646	AQ475_RS13710
AQ475_RS13760	SM00903	Flavin reductase like domain
AQ475_RS13765	SM00344	helix_turn_helix ASNC type
AQ475_RS13855	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS13890	SM00822	AQ475_RS13890
AQ475_RS13905	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS13920	SM00829	Enoylreductase
AQ475_RS13925	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS13975	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AQ475_RS13980	SM00387	Histidine kinase-like ATPases
AQ475_RS13980	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS13985	SM00448	cheY-homologous receiver domain
AQ475_RS13985	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS14015	SM01001	AIR carboxylase
AQ475_RS14115	SM00881	CoA binding domain
AQ475_RS14135	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS14140	SM00448	cheY-homologous receiver domain
AQ475_RS14140	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS14145	SM00387	Histidine kinase-like ATPases
AQ475_RS14145	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS14170	SM00448	cheY-homologous receiver domain
AQ475_RS14180	SM00387	Histidine kinase-like ATPases
AQ475_RS14180	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS14180	SM00448	cheY-homologous receiver domain
AQ475_RS14235	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS14250	SM00450	Rhodanese Homology Domain
AQ475_RS14265	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AQ475_RS14265	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS14275	SM00448	cheY-homologous receiver domain
AQ475_RS14280	SM00387	Histidine kinase-like ATPases
AQ475_RS14295	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AQ475_RS14320	SM00487	DEAD-like helicases superfamily
AQ475_RS14320	SM00490	helicase superfamily c-terminal domain
AQ475_RS14340	SM00420	helix_turn_helix, Deoxyribose operon repressor
AQ475_RS14340	SM01134	AQ475_RS14340
AQ475_RS14385	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS14400	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS14420	SM01091	Transporter associated domain
AQ475_RS14435	SM00836	DALR anticodon binding domain
AQ475_RS14445	SM00563	Phosphate acyltransferases
AQ475_RS14465	SM00650	Ribosomal RNA adenine dimethylases
AQ475_RS14495	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS14540	SM00155	Phospholipase D. Active site motifs.
AQ475_RS14560	SM00834	Putative regulatory protein
AQ475_RS14580	SM00978	AQ475_RS14580
AQ475_RS14630	SM01119	AQ475_RS14630
AQ475_RS14640	SM00347	helix_turn_helix multiple antibiotic resistance protein
AQ475_RS14660	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
AQ475_RS14680	SM00419	helix_turn_helix, cAMP Regulatory protein
AQ475_RS14720	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS14755	SM00052	Putative diguanylate phosphodiesterase
AQ475_RS14755	SM00267	diguanylate cyclase
AQ475_RS14760	SM01007	Class II Aldolase and Adducin N-terminal domain
AQ475_RS14780	SM00220	Serine/Threonine protein kinases, catalytic domain
AQ475_RS14785	SM00240	Forkhead associated domain
AQ475_RS14880	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS14915	SM00901	AQ475_RS14915
AQ475_RS14945	SM00530	Helix-turn-helix XRE-family like proteins 
AQ475_RS15020	SM00116	Domain in cystathionine beta-synthase and other proteins.
AQ475_RS15040	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS15070	SM00464	Found in ATP-dependent protease La (LON)
AQ475_RS15075	SM00478	endonuclease III
AQ475_RS15080	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AQ475_RS15080	SM01232	AQ475_RS15080
AQ475_RS15085	SM00028	Tetratricopeptide repeats
AQ475_RS15105	SM01400	AQ475_RS15105
AQ475_RS15145	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS15145	SM00962	SRP54-type protein, GTPase domain
AQ475_RS15145	SM00963	SRP54-type protein, helical bundle domain
AQ475_RS15165	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AQ475_RS15235	SM01081	Putative carbohydrate binding domain
AQ475_RS15265	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AQ475_RS15265	SM00866	AQ475_RS15265
AQ475_RS15270	SM00481	DNA polymerase alpha chain like domain
AQ475_RS15285	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS15305	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS15305	SM01049	AQ475_RS15305
AQ475_RS15395	SM00506	Appr-1"-p processing enzyme
AQ475_RS15415	SM00450	Rhodanese Homology Domain
AQ475_RS15420	SM00855	Phosphoglycerate mutase family
AQ475_RS15425	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AQ475_RS15425	SM00245	tail specific protease
AQ475_RS15465	SM00938	Nitrogen regulatory protein P-II
AQ475_RS15475	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS15500	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS15500	SM00448	cheY-homologous receiver domain
AQ475_RS15505	SM00387	Histidine kinase-like ATPases
AQ475_RS15505	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS15565	SM00829	Enoylreductase
AQ475_RS15570	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS15600	SM00936	Penicillin-binding protein 5, C-terminal domain 
AQ475_RS15630	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS15645	SM00671	Sel1-like repeats.
AQ475_RS15695	SM00346	helix_turn_helix isocitrate lyase regulation
AQ475_RS15715	SM01018	B12 binding domain
AQ475_RS15725	SM00836	DALR anticodon binding domain
AQ475_RS15725	SM01016	Arginyl tRNA synthetase N terminal dom
AQ475_RS15755	SM00347	helix_turn_helix multiple antibiotic resistance protein
AQ475_RS15765	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS15770	SM00849	Metallo-beta-lactamase superfamily
AQ475_RS15780	SM00947	Carbonic anhydrase
AQ475_RS15820	SM00729	Elongator protein 3, MiaB family, Radical SAM
AQ475_RS15820	SM00876	Biotin and Thiamin Synthesis associated domain
AQ475_RS15835	SM00098	Alkaline phosphatase homologues
AQ475_RS15840	SM00098	Alkaline phosphatase homologues
AQ475_RS15850	SM00052	Putative diguanylate phosphodiesterase
AQ475_RS15965	SM01130	AQ475_RS15965
AQ475_RS15985	SM00344	helix_turn_helix ASNC type
AQ475_RS16035	SM00344	helix_turn_helix ASNC type
AQ475_RS16075	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AQ475_RS16080	SM00354	helix_turn _helix lactose operon repressor
AQ475_RS16115	SM00905	Dihydroneopterin aldolase
AQ475_RS16160	SM00746	metallochaperone-like domain
AQ475_RS16210	SM00448	cheY-homologous receiver domain
AQ475_RS16210	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS16245	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS16250	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS16250	SM00387	Histidine kinase-like ATPases
AQ475_RS16255	SM00448	cheY-homologous receiver domain
AQ475_RS16255	SM00862	Transcriptional regulatory protein, C terminal
AQ475_RS16375	SM00047	Lysozyme subfamily 2
AQ475_RS16420	SM00858	AQ475_RS16420
AQ475_RS16465	SM00796	Allophanate hydrolase subunit 1
AQ475_RS16470	SM00797	Allophanate hydrolase subunit 2
AQ475_RS16500	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS16505	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS16540	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS16565	SM00387	Histidine kinase-like ATPases
AQ475_RS16570	SM00421	helix_turn_helix, Lux Regulon
AQ475_RS16570	SM00448	cheY-homologous receiver domain
AQ475_RS16630	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS16665	SM00858	AQ475_RS16665
AQ475_RS16670	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AQ475_RS16690	SM01130	AQ475_RS16690
AQ475_RS16775	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AQ475_RS16780	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AQ475_RS16795	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS16795	SM01086	C-terminal, D2-small domain, of ClpB protein
AQ475_RS16800	SM00448	cheY-homologous receiver domain
AQ475_RS16805	SM00387	Histidine kinase-like ATPases
AQ475_RS16805	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS16850	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS16855	SM00829	Enoylreductase
AQ475_RS16870	SM00845	GatB domain
AQ475_RS16910	SM00671	Sel1-like repeats.
AQ475_RS16940	SM00448	cheY-homologous receiver domain
AQ475_RS16945	SM00091	PAS domain
AQ475_RS16945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS16945	SM00387	Histidine kinase-like ATPases
AQ475_RS16945	SM00388	His Kinase A (phosphoacceptor) domain
AQ475_RS16990	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AQ475_RS16990	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AQ475_RS16990	SM00493	AQ475_RS16990
AQ475_RS17055	SM00478	endonuclease III
AQ475_RS17055	SM01009	AlkA N-terminal domain
AQ475_RS17060	SM00342	helix_turn_helix, arabinose operon control protein
AQ475_RS17070	SM01322	AQ475_RS17070
AQ475_RS17145	SM00857	Resolvase, N terminal domain
AQ475_RS17175	SM01234	AQ475_RS17175
AQ475_RS17975	SM00028	Tetratricopeptide repeats
AQ475_RS19930	SM00919	Malic enzyme, NAD binding domain
AQ475_RS20185	SM00363	S4 RNA-binding domain
AQ475_RS20255	SM01011	Aminopeptidase P, N-terminal domain
AQ475_RS20780	SM00825	Beta-ketoacyl synthase
AQ475_RS20780	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AQ475_RS22475	SM00316	Ribosomal protein S1-like RNA-binding domain
AQ475_RS23185	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AQ475_RS23560	SM00823	Phosphopantetheine attachment site
AQ475_RS25715	SM00826	AQ475_RS25715
AQ475_RS26690	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AQ475_RS26850	SM00387	Histidine kinase-like ATPases
AQ475_RS27615	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS27685	SM00052	Putative diguanylate phosphodiesterase
AQ475_RS28370	SM00382	ATPases associated with a variety of cellular activities
AQ475_RS28570	SM00267	diguanylate cyclase
