locus-tag class description CFF04554_RS00005 PF00308 Bacterial dnaA protein CFF04554_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CFF04554_RS00005 PF11638 DnaA N-terminal domain CFF04554_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CFF04554_RS00010 PF02767 DNA polymerase III beta subunit, central domain CFF04554_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CFF04554_RS00015 PF00204 DNA gyrase B CFF04554_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CFF04554_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS00015 PF01751 Toprim domain CFF04554_RS00025 PF14489 QueF-like protein CFF04554_RS00040 PF07559 Flagellar basal body protein FlaE CFF04554_RS00040 PF00460 Flagella basal body rod protein CFF04554_RS00040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS00045 PF03963 Flagellar hook capping protein - N-terminal region CFF04554_RS00055 PF07690 Major Facilitator Superfamily CFF04554_RS00060 PF00679 Elongation factor G C-terminus CFF04554_RS00060 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS00060 PF03144 Elongation factor Tu domain 2 CFF04554_RS00075 PF01351 Ribonuclease HII CFF04554_RS00080 PF03741 Integral membrane protein TerC family CFF04554_RS00085 PF00005 ABC transporter CFF04554_RS00085 PF08402 TOBE domain CFF04554_RS00095 PF01545 Cation efflux family CFF04554_RS00115 PF04055 Radical SAM superfamily CFF04554_RS00125 PF03372 Endonuclease/Exonuclease/phosphatase family CFF04554_RS00140 PF00268 Ribonucleotide reductase, small chain CFF04554_RS00145 PF00795 Carbon-nitrogen hydrolase CFF04554_RS00155 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CFF04554_RS00155 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CFF04554_RS00160 PF00338 Ribosomal protein S10p/S20e CFF04554_RS00165 PF00297 Ribosomal protein L3 CFF04554_RS00170 PF00573 Ribosomal protein L4/L1 family CFF04554_RS00175 PF00276 Ribosomal protein L23 CFF04554_RS00180 PF03947 Ribosomal Proteins L2, C-terminal domain CFF04554_RS00180 PF00181 Ribosomal Proteins L2, RNA binding domain CFF04554_RS00185 PF00203 Ribosomal protein S19 CFF04554_RS00190 PF00237 Ribosomal protein L22p/L17e CFF04554_RS00195 PF07650 KH domain CFF04554_RS00195 PF00189 Ribosomal protein S3, C-terminal domain CFF04554_RS00200 PF00252 Ribosomal protein L16p/L10e CFF04554_RS00205 PF00831 Ribosomal L29 protein CFF04554_RS00210 PF00366 Ribosomal protein S17 CFF04554_RS00215 PF00238 Ribosomal protein L14p/L23e CFF04554_RS00220 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CFF04554_RS00220 PF00467 KOW motif CFF04554_RS00225 PF00281 Ribosomal protein L5 CFF04554_RS00225 PF00673 ribosomal L5P family C-terminus CFF04554_RS00230 PF00253 Ribosomal protein S14p/S29e CFF04554_RS00235 PF00410 Ribosomal protein S8 CFF04554_RS00240 PF00347 Ribosomal protein L6 CFF04554_RS00245 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CFF04554_RS00250 PF00333 Ribosomal protein S5, N-terminal domain CFF04554_RS00250 PF03719 Ribosomal protein S5, C-terminal domain CFF04554_RS00255 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CFF04554_RS00260 PF00344 SecY translocase CFF04554_RS00265 PF00557 Metallopeptidase family M24 CFF04554_RS00270 PF01176 Translation initiation factor 1A / IF-1 CFF04554_RS00275 PF00444 Ribosomal protein L36 CFF04554_RS00280 PF00416 Ribosomal protein S13/S18 CFF04554_RS00285 PF00411 Ribosomal protein S11 CFF04554_RS00290 PF00163 Ribosomal protein S4/S9 N-terminal domain CFF04554_RS00290 PF01479 S4 domain CFF04554_RS00295 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CFF04554_RS00295 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CFF04554_RS00295 PF01000 RNA polymerase Rpb3/RpoA insert domain CFF04554_RS00300 PF01196 Ribosomal protein L17 CFF04554_RS00315 PF02875 Mur ligase family, glutamate ligase domain CFF04554_RS00315 PF08245 Mur ligase middle domain CFF04554_RS00320 PF02261 Aspartate decarboxylase CFF04554_RS00325 PF12729 Four helix bundle sensory module for signal transduction CFF04554_RS00325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS00325 PF00672 HAMP domain CFF04554_RS00330 PF02575 YbaB/EbfC DNA-binding family CFF04554_RS00340 PF00348 Polyprenyl synthetase CFF04554_RS00345 PF02779 Transketolase, pyrimidine binding domain CFF04554_RS00345 PF02780 Transketolase, C-terminal domain CFF04554_RS00345 PF00456 Transketolase, thiamine diphosphate binding domain CFF04554_RS00350 PF00171 Aldehyde dehydrogenase family CFF04554_RS00360 PF02554 Carbon starvation protein CstA CFF04554_RS00360 PF13722 5TM C-terminal transporter carbon starvation CstA CFF04554_RS00375 PF05690 Thiazole biosynthesis protein ThiG CFF04554_RS00380 PF18693 TRAM domain CFF04554_RS00380 PF04055 Radical SAM superfamily CFF04554_RS00380 PF00919 Uncharacterized protein family UPF0004 CFF04554_RS00385 PF09186 Domain of unknown function (DUF1949) CFF04554_RS00385 PF01205 Uncharacterized protein family UPF0029 CFF04554_RS00390 PF00483 Nucleotidyl transferase CFF04554_RS00395 PF00342 Phosphoglucose isomerase CFF04554_RS00400 PF00210 Ferritin-like domain CFF04554_RS00405 PF04264 YceI-like domain CFF04554_RS00420 PF13649 Methyltransferase domain CFF04554_RS00425 PF04301 Protein of unknown function (DUF452) CFF04554_RS00425 PF08241 Methyltransferase domain CFF04554_RS00430 PF00155 Aminotransferase class I and II CFF04554_RS00440 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS00440 PF02769 AIR synthase related protein, C-terminal domain CFF04554_RS00445 PF01142 tRNA pseudouridine synthase D (TruD) CFF04554_RS00455 PF02561 Flagellar protein FliS CFF04554_RS00460 PF02465 Flagellar hook-associated protein 2 N-terminus CFF04554_RS00460 PF07195 Flagellar hook-associated protein 2 C-terminus CFF04554_RS00460 PF07196 Flagellin hook IN motif CFF04554_RS00480 PF02119 Flagellar P-ring protein CFF04554_RS00500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS00500 PF00460 Flagella basal body rod protein CFF04554_RS00510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFF04554_RS00510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFF04554_RS00510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFF04554_RS00510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFF04554_RS00515 PF00483 Nucleotidyl transferase CFF04554_RS00515 PF01050 Mannose-6-phosphate isomerase CFF04554_RS00520 PF06508 Queuosine biosynthesis protein QueC CFF04554_RS00525 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFF04554_RS00555 PF00258 Flavodoxin CFF04554_RS00560 PF02664 S-Ribosylhomocysteinase (LuxS) CFF04554_RS00565 PF03167 Uracil DNA glycosylase superfamily CFF04554_RS00570 PF00453 Ribosomal protein L20 CFF04554_RS00575 PF01632 Ribosomal protein L35 CFF04554_RS00580 PF13416 Bacterial extracellular solute-binding protein CFF04554_RS00590 PF02321 Outer membrane efflux protein CFF04554_RS00595 PF00873 AcrB/AcrD/AcrF family CFF04554_RS00610 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CFF04554_RS00610 PF12801 4Fe-4S binding domain CFF04554_RS00610 PF13746 4Fe-4S dicluster domain CFF04554_RS00615 PF01165 Ribosomal protein S21 CFF04554_RS00630 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CFF04554_RS00635 PF12838 4Fe-4S dicluster domain CFF04554_RS00640 PF00374 Nickel-dependent hydrogenase CFF04554_RS00640 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CFF04554_RS00640 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CFF04554_RS00645 PF00361 Proton-conducting membrane transporter CFF04554_RS00645 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFF04554_RS00650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CFF04554_RS00655 PF00146 NADH dehydrogenase CFF04554_RS00660 PF00361 Proton-conducting membrane transporter CFF04554_RS00665 PF12800 4Fe-4S binding domain CFF04554_RS00665 PF13247 4Fe-4S dicluster domain CFF04554_RS00700 PF00072 Response regulator receiver domain CFF04554_RS00700 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS00710 PF01967 MoaC family CFF04554_RS00715 PF04359 Protein of unknown function (DUF493) CFF04554_RS00730 PF03605 Anaerobic c4-dicarboxylate membrane transporter CFF04554_RS00735 PF05992 SbmA/BacA-like family CFF04554_RS00740 PF01435 Peptidase family M48 CFF04554_RS00745 PF02652 L-lactate permease CFF04554_RS00750 PF01595 Cyclin M transmembrane N-terminal domain CFF04554_RS00750 PF03471 Transporter associated domain CFF04554_RS00750 PF00571 CBS domain CFF04554_RS00785 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CFF04554_RS00790 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CFF04554_RS00795 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CFF04554_RS00795 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CFF04554_RS00805 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CFF04554_RS00805 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CFF04554_RS00805 PF10531 SLBB domain CFF04554_RS00810 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CFF04554_RS00810 PF00384 Molybdopterin oxidoreductase CFF04554_RS00810 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CFF04554_RS00815 PF00146 NADH dehydrogenase CFF04554_RS00820 PF12838 4Fe-4S dicluster domain CFF04554_RS00825 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CFF04554_RS00830 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CFF04554_RS00835 PF00361 Proton-conducting membrane transporter CFF04554_RS00835 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFF04554_RS00840 PF00361 Proton-conducting membrane transporter CFF04554_RS00845 PF00361 Proton-conducting membrane transporter CFF04554_RS00855 PF01891 Cobalt uptake substrate-specific transmembrane region CFF04554_RS00870 PF00005 ABC transporter CFF04554_RS00875 PF01396 Topoisomerase DNA binding C4 zinc finger CFF04554_RS00875 PF01751 Toprim domain CFF04554_RS00875 PF01131 DNA topoisomerase CFF04554_RS00880 PF06968 Biotin and Thiamin Synthesis associated domain CFF04554_RS00880 PF04055 Radical SAM superfamily CFF04554_RS00885 PF00999 Sodium/hydrogen exchanger family CFF04554_RS00885 PF02080 TrkA-C domain CFF04554_RS00885 PF02254 TrkA-N domain CFF04554_RS00890 PF00285 Citrate synthase, C-terminal domain CFF04554_RS00895 PF00459 Inositol monophosphatase family CFF04554_RS00900 PF12849 PBP superfamily domain CFF04554_RS00905 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS00910 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS00915 PF00005 ABC transporter CFF04554_RS00920 PF07690 Major Facilitator Superfamily CFF04554_RS00925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS00925 PF08447 PAS fold CFF04554_RS00925 PF13426 PAS domain CFF04554_RS00945 PF00994 Probable molybdopterin binding domain CFF04554_RS00945 PF03454 MoeA C-terminal region (domain IV) CFF04554_RS00945 PF03453 MoeA N-terminal region (domain I and II) CFF04554_RS00960 PF02391 MoaE protein CFF04554_RS00975 PF00330 Aconitase family (aconitate hydratase) CFF04554_RS00980 PF12804 MobA-like NTP transferase domain CFF04554_RS00985 PF02253 Phospholipase A1 CFF04554_RS01000 PF03952 Enolase, N-terminal domain CFF04554_RS01000 PF00113 Enolase, C-terminal TIM barrel domain CFF04554_RS01005 PF00154 recA bacterial DNA recombination protein CFF04554_RS01010 PF02621 Menaquinone biosynthesis CFF04554_RS01020 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CFF04554_RS01045 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CFF04554_RS01045 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CFF04554_RS01045 PF13288 DXP reductoisomerase C-terminal domain CFF04554_RS01050 PF13302 Acetyltransferase (GNAT) domain CFF04554_RS01050 PF00958 GMP synthase C terminal domain CFF04554_RS01050 PF00117 Glutamine amidotransferase class-I CFF04554_RS01050 PF13673 Acetyltransferase (GNAT) domain CFF04554_RS01050 PF03352 Methyladenine glycosylase CFF04554_RS01055 PF00860 Permease family CFF04554_RS01070 PF00814 Glycoprotease family CFF04554_RS01100 PF06463 Molybdenum Cofactor Synthesis C CFF04554_RS01100 PF04055 Radical SAM superfamily CFF04554_RS01110 PF00465 Iron-containing alcohol dehydrogenase CFF04554_RS01140 PF01367 5'-3' exonuclease, C-terminal SAM fold CFF04554_RS01140 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CFF04554_RS01140 PF01612 3'-5' exonuclease CFF04554_RS01140 PF00476 DNA polymerase family A CFF04554_RS01145 PF01618 MotA/TolQ/ExbB proton channel family CFF04554_RS01150 PF13677 Membrane MotB of proton-channel complex MotA/MotB CFF04554_RS01150 PF00691 OmpA family CFF04554_RS01155 PF00037 4Fe-4S binding domain CFF04554_RS01160 PF00334 Nucleoside diphosphate kinase CFF04554_RS01170 PF01783 Ribosomal L32p protein family CFF04554_RS01175 PF02504 Fatty acid synthesis protein CFF04554_RS01180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CFF04554_RS01180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CFF04554_RS01195 PF02660 Glycerol-3-phosphate acyltransferase CFF04554_RS01205 PF00072 Response regulator receiver domain CFF04554_RS01205 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS01210 PF00512 His Kinase A (phospho-acceptor) domain CFF04554_RS01215 PF00037 4Fe-4S binding domain CFF04554_RS01230 PF01207 Dihydrouridine synthase (Dus) CFF04554_RS01245 PF02590 Predicted SPOUT methyltransferase CFF04554_RS01250 PF01039 Carboxyl transferase domain CFF04554_RS01250 PF17848 Acetyl-coA carboxylase zinc finger domain CFF04554_RS01255 PF10417 C-terminal domain of 1-Cys peroxiredoxin CFF04554_RS01255 PF00578 AhpC/TSA family CFF04554_RS01265 PF00266 Aminotransferase class-V CFF04554_RS01270 PF02601 Exonuclease VII, large subunit CFF04554_RS01270 PF13742 OB-fold nucleic acid binding domain CFF04554_RS01275 PF01209 ubiE/COQ5 methyltransferase family CFF04554_RS01290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFF04554_RS01295 PF00005 ABC transporter CFF04554_RS01315 PF02779 Transketolase, pyrimidine binding domain CFF04554_RS01315 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CFF04554_RS01315 PF02780 Transketolase, C-terminal domain CFF04554_RS01325 PF01706 FliG C-terminal domain CFF04554_RS01325 PF14841 FliG middle domain CFF04554_RS01325 PF14842 FliG N-terminal domain CFF04554_RS01330 PF08345 Flagellar M-ring protein C-terminal CFF04554_RS01330 PF01514 Secretory protein of YscJ/FliF family CFF04554_RS01335 PF00155 Aminotransferase class I and II CFF04554_RS01340 PF01842 ACT domain CFF04554_RS01340 PF01817 Chorismate mutase type II CFF04554_RS01340 PF00800 Prephenate dehydratase CFF04554_RS01350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFF04554_RS01350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFF04554_RS01365 PF01725 Ham1 family CFF04554_RS01380 PF00296 Luciferase-like monooxygenase CFF04554_RS01390 PF01032 FecCD transport family CFF04554_RS01395 PF00005 ABC transporter CFF04554_RS01405 PF01618 MotA/TolQ/ExbB proton channel family CFF04554_RS01420 PF16653 Saccharopine dehydrogenase C-terminal domain CFF04554_RS01420 PF03435 Saccharopine dehydrogenase NADP binding domain CFF04554_RS01430 PF01197 Ribosomal protein L31 CFF04554_RS01435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFF04554_RS01440 PF00588 SpoU rRNA Methylase family CFF04554_RS01440 PF08032 RNA 2'-O ribose methyltransferase substrate binding CFF04554_RS01455 PF00155 Aminotransferase class I and II CFF04554_RS01460 PF00742 Homoserine dehydrogenase CFF04554_RS01460 PF03447 Homoserine dehydrogenase, NAD binding domain CFF04554_RS01460 PF01842 ACT domain CFF04554_RS01465 PF02021 Uncharacterised protein family UPF0102 CFF04554_RS01470 PF00085 Thioredoxin CFF04554_RS01475 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFF04554_RS01485 PF05173 Dihydrodipicolinate reductase, C-terminus CFF04554_RS01485 PF01113 Dihydrodipicolinate reductase, N-terminus CFF04554_RS01490 PF00156 Phosphoribosyl transferase domain CFF04554_RS01505 PF01502 Phosphoribosyl-AMP cyclohydrolase CFF04554_RS01505 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CFF04554_RS01515 PF01063 Amino-transferase class IV CFF04554_RS01550 PF00578 AhpC/TSA family CFF04554_RS01560 PF02677 Epoxyqueuosine reductase QueH CFF04554_RS01570 PF07977 FabA-like domain CFF04554_RS01575 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CFF04554_RS01575 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS01580 PF10431 C-terminal, D2-small domain, of ClpB protein CFF04554_RS01580 PF06689 ClpX C4-type zinc finger CFF04554_RS01580 PF07724 AAA domain (Cdc48 subfamily) CFF04554_RS01595 PF02142 MGS-like domain CFF04554_RS01595 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CFF04554_RS01595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFF04554_RS01600 PF04556 DpnII restriction endonuclease CFF04554_RS01605 PF01555 DNA methylase CFF04554_RS01620 PF13426 PAS domain CFF04554_RS01620 PF08447 PAS fold CFF04554_RS01620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS01630 PF00899 ThiF family CFF04554_RS01635 PF01975 Survival protein SurE CFF04554_RS01640 PF02684 Lipid-A-disaccharide synthetase CFF04554_RS01645 PF03449 Transcription elongation factor, N-terminal CFF04554_RS01645 PF01272 Transcription elongation factor, GreA/GreB, C-term CFF04554_RS01650 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFF04554_RS01650 PF02774 Semialdehyde dehydrogenase, dimerisation domain CFF04554_RS01660 PF01584 CheW-like domain CFF04554_RS01660 PF00072 Response regulator receiver domain CFF04554_RS01665 PF02895 Signal transducing histidine kinase, homodimeric domain CFF04554_RS01665 PF01627 Hpt domain CFF04554_RS01665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS01665 PF00072 Response regulator receiver domain CFF04554_RS01665 PF01584 CheW-like domain CFF04554_RS01670 PF01584 CheW-like domain CFF04554_RS01680 PF00923 Transaldolase/Fructose-6-phosphate aldolase CFF04554_RS01685 PF00437 Type II/IV secretion system protein CFF04554_RS01690 PF01386 Ribosomal L25p family CFF04554_RS01690 PF14693 Ribosomal protein TL5, C-terminal domain CFF04554_RS01695 PF01195 Peptidyl-tRNA hydrolase CFF04554_RS01700 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFF04554_RS01710 PF02769 AIR synthase related protein, C-terminal domain CFF04554_RS01710 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS01715 PF00881 Nitroreductase family CFF04554_RS01720 PF01312 FlhB HrpN YscU SpaS Family CFF04554_RS01725 PF06965 Na+/H+ antiporter 1 CFF04554_RS01730 PF17755 UvrA DNA-binding domain CFF04554_RS01730 PF00005 ABC transporter CFF04554_RS01730 PF17760 UvrA interaction domain CFF04554_RS01735 PF00939 Sodium:sulfate symporter transmembrane region CFF04554_RS01755 PF04715 Anthranilate synthase component I, N terminal region CFF04554_RS01755 PF00425 chorismate binding enzyme CFF04554_RS01760 PF00591 Glycosyl transferase family, a/b domain CFF04554_RS01760 PF02885 Glycosyl transferase family, helical bundle domain CFF04554_RS01760 PF00117 Glutamine amidotransferase class-I CFF04554_RS01765 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CFF04554_RS01770 PF00291 Pyridoxal-phosphate dependent enzyme CFF04554_RS01775 PF00290 Tryptophan synthase alpha chain CFF04554_RS01785 PF04509 CheC-like family CFF04554_RS01785 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CFF04554_RS01800 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS01805 PF00005 ABC transporter CFF04554_RS01805 PF08402 TOBE domain CFF04554_RS01845 PF00563 EAL domain CFF04554_RS01845 PF00990 Diguanylate cyclase, GGDEF domain CFF04554_RS01845 PF03707 Bacterial signalling protein N terminal repeat CFF04554_RS01845 PF13188 PAS domain CFF04554_RS01850 PF13393 Histidyl-tRNA synthetase CFF04554_RS01855 PF00709 Adenylosuccinate synthetase CFF04554_RS01875 PF00117 Glutamine amidotransferase class-I CFF04554_RS01875 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CFF04554_RS01885 PF00512 His Kinase A (phospho-acceptor) domain CFF04554_RS01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS01885 PF00989 PAS fold CFF04554_RS01890 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS01890 PF00072 Response regulator receiver domain CFF04554_RS01895 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFF04554_RS01910 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CFF04554_RS01910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFF04554_RS01935 PF12705 PD-(D/E)XK nuclease superfamily CFF04554_RS01935 PF00580 UvrD/REP helicase N-terminal domain CFF04554_RS01935 PF13361 UvrD-like helicase C-terminal domain CFF04554_RS01940 PF00572 Ribosomal protein L13 CFF04554_RS01945 PF00380 Ribosomal protein S9/S16 CFF04554_RS01950 PF13488 Glycine zipper CFF04554_RS01950 PF00691 OmpA family CFF04554_RS01955 PF05552 Conserved TM helix CFF04554_RS01955 PF00924 Mechanosensitive ion channel CFF04554_RS01960 PF13419 Haloacid dehalogenase-like hydrolase CFF04554_RS01965 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CFF04554_RS01965 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CFF04554_RS01965 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CFF04554_RS01965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFF04554_RS01965 PF10371 Domain of unknown function CFF04554_RS01985 PF05538 Campylobacter major outer membrane protein CFF04554_RS01990 PF05538 Campylobacter major outer membrane protein CFF04554_RS02000 PF13458 Periplasmic binding protein CFF04554_RS02005 PF02653 Branched-chain amino acid transport system / permease component CFF04554_RS02010 PF02653 Branched-chain amino acid transport system / permease component CFF04554_RS02010 PF11862 Domain of unknown function (DUF3382) CFF04554_RS02015 PF00005 ABC transporter CFF04554_RS02015 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFF04554_RS02020 PF00005 ABC transporter CFF04554_RS02025 PF01578 Cytochrome C assembly protein CFF04554_RS02025 PF05140 ResB-like family CFF04554_RS02035 PF04608 Phosphatidylglycerophosphatase A CFF04554_RS02040 PF14306 PUA-like domain CFF04554_RS02040 PF01747 ATP-sulfurylase CFF04554_RS02045 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS02045 PF00072 Response regulator receiver domain CFF04554_RS02050 PF02542 YgbB family CFF04554_RS02050 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CFF04554_RS02055 PF01964 Radical SAM ThiC family CFF04554_RS02060 PF10609 NUBPL iron-transfer P-loop NTPase CFF04554_RS02060 PF01883 Iron-sulfur cluster assembly protein CFF04554_RS02065 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CFF04554_RS02065 PF14602 Hexapeptide repeat of succinyl-transferase CFF04554_RS02070 PF00005 ABC transporter CFF04554_RS02070 PF12848 ABC transporter CFF04554_RS02075 PF13085 2Fe-2S iron-sulfur cluster binding domain CFF04554_RS02075 PF13183 4Fe-4S dicluster domain CFF04554_RS02080 PF00890 FAD binding domain CFF04554_RS02080 PF02910 Fumarate reductase flavoprotein C-term CFF04554_RS02085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CFF04554_RS02090 PF01790 Prolipoprotein diacylglyceryl transferase CFF04554_RS02100 PF11798 IMS family HHH motif CFF04554_RS02100 PF11799 impB/mucB/samB family C-terminal domain CFF04554_RS02100 PF00817 impB/mucB/samB family CFF04554_RS02105 PF00403 Heavy-metal-associated domain CFF04554_RS02120 PF03222 Tryptophan/tyrosine permease family CFF04554_RS02125 PF01709 Transcriptional regulator CFF04554_RS02130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CFF04554_RS02135 PF00375 Sodium:dicarboxylate symporter family CFF04554_RS02140 PF00027 Cyclic nucleotide-binding domain CFF04554_RS02140 PF13545 Crp-like helix-turn-helix domain CFF04554_RS02145 PF01568 Molydopterin dinucleotide binding domain CFF04554_RS02145 PF00384 Molybdopterin oxidoreductase CFF04554_RS02145 PF18364 Molybdopterin oxidoreductase N-terminal domain CFF04554_RS02160 PF00158 Sigma-54 interaction domain CFF04554_RS02160 PF00072 Response regulator receiver domain CFF04554_RS02160 PF02954 Bacterial regulatory protein, Fis family CFF04554_RS02165 PF01323 DSBA-like thioredoxin domain CFF04554_RS02170 PF02600 Disulfide bond formation protein DsbB CFF04554_RS02180 PF05935 Arylsulfotransferase (ASST) CFF04554_RS02180 PF17425 Arylsulfotransferase Ig-like domain CFF04554_RS02185 PF00350 Dynamin family CFF04554_RS02190 PF00350 Dynamin family CFF04554_RS02200 PF18764 Nitrous oxide reductase propeller repeat CFF04554_RS02200 PF18793 Nitrous oxide reductase propeller repeat 2 CFF04554_RS02200 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CFF04554_RS02215 PF12838 4Fe-4S dicluster domain CFF04554_RS02215 PF12800 4Fe-4S binding domain CFF04554_RS02230 PF13237 4Fe-4S dicluster domain CFF04554_RS02230 PF12801 4Fe-4S binding domain CFF04554_RS02235 PF08402 TOBE domain CFF04554_RS02235 PF00005 ABC transporter CFF04554_RS02260 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS02260 PF00072 Response regulator receiver domain CFF04554_RS02285 PF06250 YhcG PDDEXK nuclease domain CFF04554_RS02285 PF17761 DUF1016 N-terminal domain CFF04554_RS02305 PF00005 ABC transporter CFF04554_RS02305 PF00664 ABC transporter transmembrane region CFF04554_RS02330 PF02130 Uncharacterized protein family UPF0054 CFF04554_RS02345 PF00005 ABC transporter CFF04554_RS02350 PF02405 Permease MlaE CFF04554_RS02355 PF01594 AI-2E family transporter CFF04554_RS02360 PF17864 RuvB AAA lid domain CFF04554_RS02360 PF05491 RuvB C-terminal winged helix domain CFF04554_RS02360 PF05496 Holliday junction DNA helicase RuvB P-loop domain CFF04554_RS02370 PF02548 Ketopantoate hydroxymethyltransferase CFF04554_RS02415 PF13173 AAA domain CFF04554_RS02415 PF13635 Domain of unknown function (DUF4143) CFF04554_RS02425 PF16363 GDP-mannose 4,6 dehydratase CFF04554_RS02435 PF00005 ABC transporter CFF04554_RS02450 PF02397 Bacterial sugar transferase CFF04554_RS02455 PF18073 Rubredoxin metal binding domain CFF04554_RS02460 PF00448 SRP54-type protein, GTPase domain CFF04554_RS02465 PF00578 AhpC/TSA family CFF04554_RS02475 PF12072 Domain of unknown function (DUF3552) CFF04554_RS02475 PF01966 HD domain CFF04554_RS02520 PF00672 HAMP domain CFF04554_RS02520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS02520 PF17200 Single Cache domain 2 CFF04554_RS02525 PF00202 Aminotransferase class-III CFF04554_RS02530 PF00633 Helix-hairpin-helix motif CFF04554_RS02530 PF10576 Iron-sulfur binding domain of endonuclease III CFF04554_RS02530 PF00730 HhH-GPD superfamily base excision DNA repair protein CFF04554_RS02540 PF01116 Fructose-bisphosphate aldolase class-II CFF04554_RS02560 PF00815 Histidinol dehydrogenase CFF04554_RS02565 PF00669 Bacterial flagellin N-terminal helical region CFF04554_RS02575 PF04542 Sigma-70 region 2 CFF04554_RS02575 PF00140 Sigma-70 factor, region 1.2 CFF04554_RS02575 PF04545 Sigma-70, region 4 CFF04554_RS02575 PF04539 Sigma-70 region 3 CFF04554_RS02580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS02580 PF00460 Flagella basal body rod protein CFF04554_RS02585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS02585 PF00460 Flagella basal body rod protein CFF04554_RS02590 PF03239 Iron permease FTR1 family CFF04554_RS02595 PF10634 Fe2+ transport protein CFF04554_RS02615 PF00005 ABC transporter CFF04554_RS02615 PF02687 FtsX-like permease family CFF04554_RS02615 PF12704 MacB-like periplasmic core domain CFF04554_RS02625 PF04371 Porphyromonas-type peptidyl-arginine deiminase CFF04554_RS02630 PF01545 Cation efflux family CFF04554_RS02630 PF16916 Dimerisation domain of Zinc Transporter CFF04554_RS02635 PF00795 Carbon-nitrogen hydrolase CFF04554_RS02640 PF03616 Sodium/glutamate symporter CFF04554_RS02660 PF00072 Response regulator receiver domain CFF04554_RS02660 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS02665 PF08946 Osmosensory transporter coiled coil CFF04554_RS02665 PF00083 Sugar (and other) transporter CFF04554_RS02670 PF00005 ABC transporter CFF04554_RS02670 PF16326 ABC transporter C-terminal domain CFF04554_RS02670 PF12848 ABC transporter CFF04554_RS02675 PF00209 Sodium:neurotransmitter symporter family CFF04554_RS02680 PF16491 CAAX prenyl protease N-terminal, five membrane helices CFF04554_RS02680 PF01435 Peptidase family M48 CFF04554_RS02685 PF17827 PrmC N-terminal domain CFF04554_RS02685 PF05175 Methyltransferase small domain CFF04554_RS02700 PF03061 Thioesterase superfamily CFF04554_RS02720 PF00909 Ammonium Transporter Family CFF04554_RS02725 PF00543 Nitrogen regulatory protein P-II CFF04554_RS02730 PF00468 Ribosomal protein L34 CFF04554_RS02735 PF00825 Ribonuclease P CFF04554_RS02740 PF01809 Putative membrane protein insertion efficiency factor CFF04554_RS02745 PF14849 YidC periplasmic domain CFF04554_RS02745 PF02096 60Kd inner membrane protein CFF04554_RS02755 PF01926 50S ribosome-binding GTPase CFF04554_RS02755 PF12631 MnmE helical domain CFF04554_RS02755 PF10396 GTP-binding protein TrmE N-terminus CFF04554_RS02760 PF02769 AIR synthase related protein, C-terminal domain CFF04554_RS02760 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS02760 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CFF04554_RS02765 PF01556 DnaJ C terminal domain CFF04554_RS02765 PF00684 DnaJ central domain CFF04554_RS02765 PF00226 DnaJ domain CFF04554_RS02770 PF02142 MGS-like domain CFF04554_RS02770 PF01808 AICARFT/IMPCHase bienzyme CFF04554_RS02785 PF01883 Iron-sulfur cluster assembly protein CFF04554_RS02790 PF00672 HAMP domain CFF04554_RS02790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS02795 PF01063 Amino-transferase class IV CFF04554_RS02815 PF01795 MraW methylase family CFF04554_RS02825 PF13145 PPIC-type PPIASE domain CFF04554_RS02830 PF02491 SHS2 domain inserted in FTSA CFF04554_RS02835 PF12327 FtsZ family, C-terminal domain CFF04554_RS02835 PF00091 Tubulin/FtsZ family, GTPase domain CFF04554_RS02845 PF05970 PIF1-like helicase CFF04554_RS02845 PF02689 Helicase CFF04554_RS02855 PF03548 Outer membrane lipoprotein carrier protein LolA CFF04554_RS02860 PF02810 SEC-C motif CFF04554_RS02860 PF07517 SecA DEAD-like domain CFF04554_RS02860 PF01043 SecA preprotein cross-linking domain CFF04554_RS02860 PF07516 SecA Wing and Scaffold domain CFF04554_RS02865 PF12704 MacB-like periplasmic core domain CFF04554_RS02865 PF02687 FtsX-like permease family CFF04554_RS02880 PF07690 Major Facilitator Superfamily CFF04554_RS02890 PF00860 Permease family CFF04554_RS02895 PF04055 Radical SAM superfamily CFF04554_RS02900 PF01842 ACT domain CFF04554_RS02900 PF01966 HD domain CFF04554_RS02900 PF08335 GlnD PII-uridylyltransferase CFF04554_RS02905 PF01380 SIS domain CFF04554_RS02910 PF04143 Sulphur transport CFF04554_RS02915 PF01206 Sulfurtransferase TusA CFF04554_RS02920 PF01177 Asp/Glu/Hydantoin racemase CFF04554_RS02925 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CFF04554_RS03000 PF00990 Diguanylate cyclase, GGDEF domain CFF04554_RS03000 PF00072 Response regulator receiver domain CFF04554_RS03010 PF00994 Probable molybdopterin binding domain CFF04554_RS03010 PF18146 Damage-inducible protein CinA KH domain CFF04554_RS03010 PF02464 Competence-damaged protein CFF04554_RS03020 PF08264 Anticodon-binding domain of tRNA CFF04554_RS03020 PF00133 tRNA synthetases class I (I, L, M and V) CFF04554_RS03025 PF01425 Amidase CFF04554_RS03030 PF00478 IMP dehydrogenase / GMP reductase domain CFF04554_RS03030 PF00571 CBS domain CFF04554_RS03035 PF00561 alpha/beta hydrolase fold CFF04554_RS03040 PF02609 Exonuclease VII small subunit CFF04554_RS03050 PF08245 Mur ligase middle domain CFF04554_RS03050 PF01225 Mur ligase family, catalytic domain CFF04554_RS03050 PF02875 Mur ligase family, glutamate ligase domain CFF04554_RS03060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFF04554_RS03065 PF00005 ABC transporter CFF04554_RS03065 PF17850 CysA C-terminal regulatory domain CFF04554_RS03065 PF12857 TOBE-like domain CFF04554_RS03070 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS03090 PF00488 MutS domain V CFF04554_RS03090 PF01713 Smr domain CFF04554_RS03095 PF00990 Diguanylate cyclase, GGDEF domain CFF04554_RS03095 PF00563 EAL domain CFF04554_RS03095 PF08495 FIST N domain CFF04554_RS03095 PF10442 FIST C domain CFF04554_RS03105 PF07687 Peptidase dimerisation domain CFF04554_RS03105 PF01546 Peptidase family M20/M25/M40 CFF04554_RS03110 PF06039 Malate:quinone oxidoreductase (Mqo) CFF04554_RS03120 PF00224 Pyruvate kinase, barrel domain CFF04554_RS03120 PF00391 PEP-utilising enzyme, mobile domain CFF04554_RS03120 PF02887 Pyruvate kinase, alpha/beta domain CFF04554_RS03125 PF05193 Peptidase M16 inactive domain CFF04554_RS03130 PF00271 Helicase conserved C-terminal domain CFF04554_RS03130 PF04851 Type III restriction enzyme, res subunit CFF04554_RS03135 PF01474 Class-II DAHP synthetase family CFF04554_RS03140 PF00171 Aldehyde dehydrogenase family CFF04554_RS03145 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFF04554_RS03155 PF08468 Methyltransferase small domain N-terminal CFF04554_RS03155 PF05175 Methyltransferase small domain CFF04554_RS03160 PF03692 Putative zinc- or iron-chelating domain CFF04554_RS03170 PF00218 Indole-3-glycerol phosphate synthase CFF04554_RS03180 PF03883 Peroxide stress protein YaaA CFF04554_RS03215 PF02661 Fic/DOC family CFF04554_RS03285 PF17841 BID domain of Bartonella effector protein (Bep) CFF04554_RS03285 PF02661 Fic/DOC family CFF04554_RS03400 PF00289 Biotin carboxylase, N-terminal domain CFF04554_RS03400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFF04554_RS03400 PF02785 Biotin carboxylase C-terminal domain CFF04554_RS03410 PF04377 Arginine-tRNA-protein transferase, C terminus CFF04554_RS03410 PF04376 Arginine-tRNA-protein transferase, N terminus CFF04554_RS03415 PF00226 DnaJ domain CFF04554_RS03415 PF01556 DnaJ C terminal domain CFF04554_RS03415 PF00684 DnaJ central domain CFF04554_RS03420 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CFF04554_RS03425 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CFF04554_RS03430 PF01384 Phosphate transporter family CFF04554_RS03435 PF00700 Bacterial flagellin C-terminal helical region CFF04554_RS03435 PF00669 Bacterial flagellin N-terminal helical region CFF04554_RS03440 PF17854 FtsK alpha domain CFF04554_RS03440 PF09397 Ftsk gamma domain CFF04554_RS03440 PF01580 FtsK/SpoIIIE family CFF04554_RS03455 PF00348 Polyprenyl synthetase CFF04554_RS03460 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CFF04554_RS03460 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CFF04554_RS03460 PF01488 Shikimate / quinate 5-dehydrogenase CFF04554_RS03465 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFF04554_RS03465 PF04073 Aminoacyl-tRNA editing domain CFF04554_RS03465 PF03129 Anticodon binding domain CFF04554_RS03475 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CFF04554_RS03475 PF03900 Porphobilinogen deaminase, C-terminal domain CFF04554_RS03480 PF03631 Virulence factor BrkB CFF04554_RS03485 PF01565 FAD binding domain CFF04554_RS03485 PF02913 FAD linked oxidases, C-terminal domain CFF04554_RS03495 PF08525 Opacity-associated protein A N-terminal motif CFF04554_RS03495 PF01551 Peptidase family M23 CFF04554_RS03495 PF01476 LysM domain CFF04554_RS03500 PF01769 Divalent cation transporter CFF04554_RS03500 PF03448 MgtE intracellular N domain CFF04554_RS03500 PF00571 CBS domain CFF04554_RS03505 PF00293 NUDIX domain CFF04554_RS03515 PF00166 Chaperonin 10 Kd subunit CFF04554_RS03520 PF00118 TCP-1/cpn60 chaperonin family CFF04554_RS03525 PF00762 Ferrochelatase CFF04554_RS03530 PF00905 Penicillin binding protein transpeptidase domain CFF04554_RS03530 PF03717 Penicillin-binding Protein dimerisation domain CFF04554_RS03535 PF02049 Flagellar hook-basal body complex protein FliE CFF04554_RS03540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS03540 PF00460 Flagella basal body rod protein CFF04554_RS03545 PF00460 Flagella basal body rod protein CFF04554_RS03550 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CFF04554_RS03560 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS03560 PF17871 AAA lid domain CFF04554_RS03560 PF02861 Clp amino terminal domain, pathogenicity island component CFF04554_RS03560 PF07724 AAA domain (Cdc48 subfamily) CFF04554_RS03560 PF10431 C-terminal, D2-small domain, of ClpB protein CFF04554_RS03565 PF02617 ATP-dependent Clp protease adaptor protein ClpS CFF04554_RS03575 PF01668 SmpB protein CFF04554_RS03580 PF00288 GHMP kinases N terminal domain CFF04554_RS03585 PF02599 Global regulator protein family CFF04554_RS03590 PF01509 TruB family pseudouridylate synthase (N terminal domain) CFF04554_RS03595 PF13361 UvrD-like helicase C-terminal domain CFF04554_RS03595 PF00580 UvrD/REP helicase N-terminal domain CFF04554_RS03600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFF04554_RS03615 PF00375 Sodium:dicarboxylate symporter family CFF04554_RS03620 PF00438 S-adenosylmethionine synthetase, N-terminal domain CFF04554_RS03620 PF02773 S-adenosylmethionine synthetase, C-terminal domain CFF04554_RS03620 PF02772 S-adenosylmethionine synthetase, central domain CFF04554_RS03625 PF01297 Zinc-uptake complex component A periplasmic CFF04554_RS03630 PF00005 ABC transporter CFF04554_RS03635 PF00950 ABC 3 transport family CFF04554_RS03640 PF00950 ABC 3 transport family CFF04554_RS03650 PF02699 Preprotein translocase subunit CFF04554_RS03655 PF02355 Protein export membrane protein CFF04554_RS03660 PF02355 Protein export membrane protein CFF04554_RS03660 PF07549 SecD/SecF GG Motif CFF04554_RS03670 PF00133 tRNA synthetases class I (I, L, M and V) CFF04554_RS03670 PF13603 Leucyl-tRNA synthetase, Domain 2 CFF04554_RS03670 PF09334 tRNA synthetases class I (M) CFF04554_RS03680 PF00990 Diguanylate cyclase, GGDEF domain CFF04554_RS03685 PF02875 Mur ligase family, glutamate ligase domain CFF04554_RS03685 PF08245 Mur ligase middle domain CFF04554_RS03690 PF01551 Peptidase family M23 CFF04554_RS03690 PF04225 Opacity-associated protein A LysM-like domain CFF04554_RS03700 PF00271 Helicase conserved C-terminal domain CFF04554_RS03700 PF00270 DEAD/DEAH box helicase CFF04554_RS03700 PF17757 UvrB interaction domain CFF04554_RS03700 PF03461 TRCF domain CFF04554_RS03700 PF02559 CarD-like/TRCF domain CFF04554_RS03725 PF13380 CoA binding domain CFF04554_RS03730 PF13291 ACT domain CFF04554_RS03730 PF00291 Pyridoxal-phosphate dependent enzyme CFF04554_RS03735 PF13332 Hemagglutinin repeat CFF04554_RS03735 PF05594 Haemagluttinin repeat CFF04554_RS03735 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain CFF04554_RS03735 PF05860 haemagglutination activity domain CFF04554_RS03735 PF13018 Extended Signal Peptide of Type V secretion system CFF04554_RS03750 PF01416 tRNA pseudouridine synthase CFF04554_RS03760 PF06750 Bacterial Peptidase A24 N-terminal domain CFF04554_RS03760 PF01478 Type IV leader peptidase family CFF04554_RS03765 PF01255 Putative undecaprenyl diphosphate synthase CFF04554_RS03775 PF04127 DNA / pantothenate metabolism flavoprotein CFF04554_RS03775 PF02441 Flavoprotein CFF04554_RS03780 PF12804 MobA-like NTP transferase domain CFF04554_RS03780 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS03785 PF00813 FliP family CFF04554_RS03800 PF02445 Quinolinate synthetase A protein CFF04554_RS03805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFF04554_RS03810 PF12704 MacB-like periplasmic core domain CFF04554_RS03810 PF02687 FtsX-like permease family CFF04554_RS03810 PF00005 ABC transporter CFF04554_RS03815 PF02321 Outer membrane efflux protein CFF04554_RS03830 PF00072 Response regulator receiver domain CFF04554_RS03830 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS03835 PF13180 PDZ domain CFF04554_RS03835 PF17820 PDZ domain CFF04554_RS03840 PF00226 DnaJ domain CFF04554_RS03840 PF01556 DnaJ C terminal domain CFF04554_RS03845 PF13411 MerR HTH family regulatory protein CFF04554_RS03850 PF00999 Sodium/hydrogen exchanger family CFF04554_RS03850 PF02254 TrkA-N domain CFF04554_RS03855 PF02080 TrkA-C domain CFF04554_RS03855 PF00999 Sodium/hydrogen exchanger family CFF04554_RS03855 PF03471 Transporter associated domain CFF04554_RS03865 PF01925 Sulfite exporter TauE/SafE CFF04554_RS03870 PF00119 ATP synthase A chain CFF04554_RS03880 PF02581 Thiamine monophosphate synthase CFF04554_RS03885 PF02637 GatB domain CFF04554_RS03885 PF02934 GatB/GatE catalytic domain CFF04554_RS03890 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CFF04554_RS03890 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CFF04554_RS03895 PF00933 Glycosyl hydrolase family 3 N terminal domain CFF04554_RS03905 PF00892 EamA-like transporter family CFF04554_RS03910 PF00005 ABC transporter CFF04554_RS03915 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS03920 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFF04554_RS03925 PF01066 CDP-alcohol phosphatidyltransferase CFF04554_RS03935 PF00701 Dihydrodipicolinate synthetase family CFF04554_RS03940 PF00675 Insulinase (Peptidase family M16) CFF04554_RS03940 PF05193 Peptidase M16 inactive domain CFF04554_RS03945 PF01180 Dihydroorotate dehydrogenase CFF04554_RS03950 PF00005 ABC transporter CFF04554_RS03950 PF00664 ABC transporter transmembrane region CFF04554_RS03955 PF01406 tRNA synthetases class I (C) catalytic domain CFF04554_RS03955 PF09190 DALR domain CFF04554_RS03960 PF03023 Lipid II flippase MurJ CFF04554_RS03985 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CFF04554_RS03995 PF09334 tRNA synthetases class I (M) CFF04554_RS03995 PF00133 tRNA synthetases class I (I, L, M and V) CFF04554_RS03995 PF01588 Putative tRNA binding domain CFF04554_RS04020 PF04055 Radical SAM superfamily CFF04554_RS04035 PF01739 CheR methyltransferase, SAM binding domain CFF04554_RS04040 PF00072 Response regulator receiver domain CFF04554_RS04040 PF01339 CheB methylesterase CFF04554_RS04050 PF07499 RuvA, C-terminal domain CFF04554_RS04050 PF01330 RuvA N terminal domain CFF04554_RS04055 PF07478 D-ala D-ala ligase C-terminus CFF04554_RS04055 PF01820 D-ala D-ala ligase N-terminus CFF04554_RS04070 PF08245 Mur ligase middle domain CFF04554_RS04070 PF02875 Mur ligase family, glutamate ligase domain CFF04554_RS04075 PF00871 Acetokinase family CFF04554_RS04080 PF01515 Phosphate acetyl/butaryl transferase CFF04554_RS04085 PF02107 Flagellar L-ring protein CFF04554_RS04095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFF04554_RS04095 PF00205 Thiamine pyrophosphate enzyme, central domain CFF04554_RS04095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFF04554_RS04100 PF10369 Small subunit of acetolactate synthase CFF04554_RS04105 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS04105 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CFF04554_RS04115 PF09335 SNARE associated Golgi protein CFF04554_RS04120 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CFF04554_RS04120 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CFF04554_RS04125 PF01842 ACT domain CFF04554_RS04125 PF00551 Formyl transferase CFF04554_RS04130 PF00588 SpoU rRNA Methylase family CFF04554_RS04145 PF02092 Glycyl-tRNA synthetase beta subunit CFF04554_RS04150 PF02086 D12 class N6 adenine-specific DNA methyltransferase CFF04554_RS04165 PF01235 Sodium:alanine symporter family CFF04554_RS04170 PF00403 Heavy-metal-associated domain CFF04554_RS04205 PF01476 LysM domain CFF04554_RS04205 PF08525 Opacity-associated protein A N-terminal motif CFF04554_RS04205 PF01551 Peptidase family M23 CFF04554_RS04215 PF00072 Response regulator receiver domain CFF04554_RS04215 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS04220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS04225 PF00764 Arginosuccinate synthase CFF04554_RS04230 PF00589 Phage integrase family CFF04554_RS04230 PF18644 Phage integrase SAM-like domain CFF04554_RS04235 PF01098 Cell cycle protein CFF04554_RS04240 PF03033 Glycosyltransferase family 28 N-terminal domain CFF04554_RS04240 PF04101 Glycosyltransferase family 28 C-terminal domain CFF04554_RS04245 PF00216 Bacterial DNA-binding protein CFF04554_RS04250 PF01618 MotA/TolQ/ExbB proton channel family CFF04554_RS04255 PF02472 Biopolymer transport protein ExbD/TolR CFF04554_RS04265 PF01479 S4 domain CFF04554_RS04270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CFF04554_RS04275 PF00005 ABC transporter CFF04554_RS04280 PF04963 Sigma-54 factor, core binding domain CFF04554_RS04280 PF00309 Sigma-54 factor, Activator interacting domain (AID) CFF04554_RS04280 PF04552 Sigma-54, DNA binding domain CFF04554_RS04285 PF01761 3-dehydroquinate synthase CFF04554_RS04295 PF00919 Uncharacterized protein family UPF0004 CFF04554_RS04295 PF04055 Radical SAM superfamily CFF04554_RS04300 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS04300 PF01434 Peptidase family M41 CFF04554_RS04300 PF06480 FtsH Extracellular CFF04554_RS04300 PF17862 AAA+ lid domain CFF04554_RS04305 PF00994 Probable molybdopterin binding domain CFF04554_RS04310 PF01168 Alanine racemase, N-terminal domain CFF04554_RS04315 PF17820 PDZ domain CFF04554_RS04315 PF02163 Peptidase family M50 CFF04554_RS04320 PF00834 Ribulose-phosphate 3 epimerase family CFF04554_RS04330 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CFF04554_RS04330 PF00270 DEAD/DEAH box helicase CFF04554_RS04330 PF00271 Helicase conserved C-terminal domain CFF04554_RS04330 PF18074 Primosomal protein N C-terminal domain CFF04554_RS04330 PF17764 3′ DNA-binding domain (3′BD) CFF04554_RS04335 PF07963 Prokaryotic N-terminal methylation motif CFF04554_RS04335 PF00114 Pilin (bacterial filament) CFF04554_RS04340 PF07963 Prokaryotic N-terminal methylation motif CFF04554_RS04340 PF08334 Type II secretion system (T2SS), protein G CFF04554_RS04345 PF07963 Prokaryotic N-terminal methylation motif CFF04554_RS04345 PF08334 Type II secretion system (T2SS), protein G CFF04554_RS04365 PF00271 Helicase conserved C-terminal domain CFF04554_RS04365 PF02151 UvrB/uvrC motif CFF04554_RS04365 PF12344 Ultra-violet resistance protein B CFF04554_RS04365 PF17757 UvrB interaction domain CFF04554_RS04365 PF04851 Type III restriction enzyme, res subunit CFF04554_RS04375 PF07715 TonB-dependent Receptor Plug Domain CFF04554_RS04375 PF00593 TonB dependent receptor CFF04554_RS04385 PF13090 Polyphosphate kinase C-terminal domain 2 CFF04554_RS04385 PF13089 Polyphosphate kinase N-terminal domain CFF04554_RS04385 PF17941 Polyphosphate kinase C-terminal domain 1 CFF04554_RS04385 PF02503 Polyphosphate kinase middle domain CFF04554_RS04395 PF08267 Cobalamin-independent synthase, N-terminal domain CFF04554_RS04395 PF01717 Cobalamin-independent synthase, Catalytic domain CFF04554_RS04410 PF00300 Histidine phosphatase superfamily (branch 1) CFF04554_RS04415 PF04305 Protein of unknown function (DUF455) CFF04554_RS04425 PF02754 Cysteine-rich domain CFF04554_RS04430 PF02589 LUD domain CFF04554_RS04430 PF11870 Domain of unknown function (DUF3390) CFF04554_RS04430 PF13183 4Fe-4S dicluster domain CFF04554_RS04435 PF02589 LUD domain CFF04554_RS04445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFF04554_RS04450 PF00994 Probable molybdopterin binding domain CFF04554_RS04450 PF03454 MoeA C-terminal region (domain IV) CFF04554_RS04450 PF03453 MoeA N-terminal region (domain I and II) CFF04554_RS04465 PF01467 Cytidylyltransferase-like CFF04554_RS04470 PF02223 Thymidylate kinase CFF04554_RS04475 PF13393 Histidyl-tRNA synthetase CFF04554_RS04475 PF03129 Anticodon binding domain CFF04554_RS04480 PF17810 Arginine decarboxylase helical bundle domain CFF04554_RS04480 PF17944 Arginine decarboxylase C-terminal helical extension CFF04554_RS04480 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFF04554_RS04485 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS04485 PF06426 Serine acetyltransferase, N-terminal CFF04554_RS04490 PF00155 Aminotransferase class I and II CFF04554_RS04495 PF01501 Glycosyl transferase family 8 CFF04554_RS04495 PF00535 Glycosyl transferase family 2 CFF04554_RS04505 PF00258 Flavodoxin CFF04554_RS04535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFF04554_RS04535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFF04554_RS04535 PF00205 Thiamine pyrophosphate enzyme, central domain CFF04554_RS04540 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CFF04554_RS04540 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CFF04554_RS04540 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CFF04554_RS04550 PF00549 CoA-ligase CFF04554_RS04550 PF02629 CoA binding domain CFF04554_RS04555 PF00549 CoA-ligase CFF04554_RS04555 PF08442 ATP-grasp domain CFF04554_RS04560 PF00056 lactate/malate dehydrogenase, NAD binding domain CFF04554_RS04560 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CFF04554_RS04565 PF03971 Monomeric isocitrate dehydrogenase CFF04554_RS04585 PF00171 Aldehyde dehydrogenase family CFF04554_RS04590 PF03063 Prismane/CO dehydrogenase family CFF04554_RS04595 PF01053 Cys/Met metabolism PLP-dependent enzyme CFF04554_RS04600 PF02082 Transcriptional regulator CFF04554_RS04605 PF00291 Pyridoxal-phosphate dependent enzyme CFF04554_RS04610 PF01648 4'-phosphopantetheinyl transferase superfamily CFF04554_RS04615 PF03748 Flagellar basal body-associated protein FliL CFF04554_RS04620 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFF04554_RS04625 PF00202 Aminotransferase class-III CFF04554_RS04630 PF03458 UPF0126 domain CFF04554_RS04645 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CFF04554_RS04650 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS04650 PF02769 AIR synthase related protein, C-terminal domain CFF04554_RS04655 PF01924 Hydrogenase formation hypA family CFF04554_RS04660 PF01455 HupF/HypC family CFF04554_RS04665 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFF04554_RS04670 PF01402 Ribbon-helix-helix protein, copG family CFF04554_RS04670 PF08753 NikR C terminal nickel binding domain CFF04554_RS04675 PF00708 Acylphosphatase CFF04554_RS04675 PF01300 Telomere recombination CFF04554_RS04675 PF07503 HypF finger CFF04554_RS04675 PF17788 HypF Kae1-like domain CFF04554_RS04685 PF01750 Hydrogenase maturation protease CFF04554_RS04690 PF01292 Prokaryotic cytochrome b561 CFF04554_RS04695 PF00374 Nickel-dependent hydrogenase CFF04554_RS04700 PF10518 TAT (twin-arginine translocation) pathway signal sequence CFF04554_RS04700 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CFF04554_RS04700 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CFF04554_RS04710 PF03591 AzlC protein CFF04554_RS04715 PF07724 AAA domain (Cdc48 subfamily) CFF04554_RS04715 PF17871 AAA lid domain CFF04554_RS04715 PF02861 Clp amino terminal domain, pathogenicity island component CFF04554_RS04715 PF10431 C-terminal, D2-small domain, of ClpB protein CFF04554_RS04715 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS04720 PF13180 PDZ domain CFF04554_RS04720 PF03572 Peptidase family S41 CFF04554_RS04725 PF01259 SAICAR synthetase CFF04554_RS04730 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CFF04554_RS04745 PF01553 Acyltransferase CFF04554_RS04750 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CFF04554_RS04760 PF03372 Endonuclease/Exonuclease/phosphatase family CFF04554_RS04775 PF03372 Endonuclease/Exonuclease/phosphatase family CFF04554_RS04780 PF03498 Cytolethal distending toxin A/C domain CFF04554_RS04785 PF00183 Hsp90 protein CFF04554_RS04795 PF13649 Methyltransferase domain CFF04554_RS04800 PF00580 UvrD/REP helicase N-terminal domain CFF04554_RS04800 PF13361 UvrD-like helicase C-terminal domain CFF04554_RS04810 PF00206 Lyase CFF04554_RS04810 PF10415 Fumarase C C-terminus CFF04554_RS04815 PF10458 Valyl tRNA synthetase tRNA binding arm CFF04554_RS04815 PF08264 Anticodon-binding domain of tRNA CFF04554_RS04815 PF00133 tRNA synthetases class I (I, L, M and V) CFF04554_RS04820 PF09383 NIL domain CFF04554_RS04820 PF00005 ABC transporter CFF04554_RS04825 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS04830 PF08543 Phosphomethylpyrimidine kinase CFF04554_RS04830 PF02581 Thiamine monophosphate synthase CFF04554_RS04835 PF03180 NLPA lipoprotein CFF04554_RS04840 PF00830 Ribosomal L28 family CFF04554_RS04850 PF01960 ArgJ family CFF04554_RS04860 PF02743 Cache domain CFF04554_RS04860 PF00672 HAMP domain CFF04554_RS04860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS04865 PF05958 tRNA (Uracil-5-)-methyltransferase CFF04554_RS04870 PF00106 short chain dehydrogenase CFF04554_RS04885 PF01702 Queuine tRNA-ribosyltransferase CFF04554_RS04895 PF00772 DnaB-like helicase N terminal domain CFF04554_RS04895 PF03796 DnaB-like helicase C terminal domain CFF04554_RS04900 PF04551 GcpE protein CFF04554_RS04925 PF01152 Bacterial-like globin CFF04554_RS04940 PF00330 Aconitase family (aconitate hydratase) CFF04554_RS04940 PF06434 Aconitate hydratase 2 N-terminus CFF04554_RS04940 PF11791 Aconitate B N-terminal domain CFF04554_RS04945 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CFF04554_RS04945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFF04554_RS04950 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CFF04554_RS04950 PF00925 GTP cyclohydrolase II CFF04554_RS04955 PF03948 Ribosomal protein L9, C-terminal domain CFF04554_RS04955 PF01281 Ribosomal protein L9, N-terminal domain CFF04554_RS04960 PF00227 Proteasome subunit CFF04554_RS04965 PF10431 C-terminal, D2-small domain, of ClpB protein CFF04554_RS04965 PF07724 AAA domain (Cdc48 subfamily) CFF04554_RS04970 PF01926 50S ribosome-binding GTPase CFF04554_RS04970 PF07650 KH domain CFF04554_RS04995 PF07660 Secretin and TonB N terminus short domain CFF04554_RS04995 PF03958 Bacterial type II/III secretion system short domain CFF04554_RS04995 PF11741 AMIN domain CFF04554_RS04995 PF00263 Bacterial type II and III secretion system protein CFF04554_RS05010 PF00437 Type II/IV secretion system protein CFF04554_RS05015 PF00482 Type II secretion system (T2SS), protein F CFF04554_RS05025 PF13426 PAS domain CFF04554_RS05025 PF08447 PAS fold CFF04554_RS05025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS05035 PF02541 Ppx/GppA phosphatase family CFF04554_RS05040 PF01966 HD domain CFF04554_RS05040 PF12627 Probable RNA and SrmB- binding site of polymerase A CFF04554_RS05040 PF01743 Poly A polymerase head domain CFF04554_RS05055 PF00180 Isocitrate/isopropylmalate dehydrogenase CFF04554_RS05060 PF00694 Aconitase C-terminal domain CFF04554_RS05080 PF17763 Glutaminase/Asparaginase C-terminal domain CFF04554_RS05080 PF00710 Asparaginase, N-terminal CFF04554_RS05085 PF02646 RmuC family CFF04554_RS05095 PF08274 PhnA Zinc-Ribbon CFF04554_RS05095 PF03831 PhnA domain CFF04554_RS05100 PF01411 tRNA synthetases class II (A) CFF04554_RS05100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFF04554_RS05100 PF02272 DHHA1 domain CFF04554_RS05110 PF02545 Maf-like protein CFF04554_RS05115 PF17092 Penicillin-binding protein OB-like domain CFF04554_RS05115 PF00905 Penicillin binding protein transpeptidase domain CFF04554_RS05115 PF00912 Transglycosylase CFF04554_RS05125 PF01245 Ribosomal protein L19 CFF04554_RS05130 PF01746 tRNA (Guanine-1)-methyltransferase CFF04554_RS05135 PF01782 RimM N-terminal domain CFF04554_RS05135 PF05239 PRC-barrel domain CFF04554_RS05145 PF00886 Ribosomal protein S16 CFF04554_RS05150 PF02881 SRP54-type protein, helical bundle domain CFF04554_RS05150 PF00448 SRP54-type protein, GTPase domain CFF04554_RS05150 PF02978 Signal peptide binding domain CFF04554_RS05155 PF00939 Sodium:sulfate symporter transmembrane region CFF04554_RS05160 PF00672 HAMP domain CFF04554_RS05160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS05165 PF00849 RNA pseudouridylate synthase CFF04554_RS05170 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CFF04554_RS05170 PF02390 Putative methyltransferase CFF04554_RS05180 PF01784 NIF3 (NGG1p interacting factor 3) CFF04554_RS05185 PF02091 Glycyl-tRNA synthetase alpha subunit CFF04554_RS05195 PF00731 AIR carboxylase CFF04554_RS05200 PF01136 Peptidase family U32 CFF04554_RS05215 PF02811 PHP domain CFF04554_RS05220 PF00120 Glutamine synthetase, catalytic domain CFF04554_RS05220 PF03951 Glutamine synthetase, beta-Grasp domain CFF04554_RS05230 PF00023 Ankyrin repeat CFF04554_RS05230 PF12796 Ankyrin repeats (3 copies) CFF04554_RS05235 PF06628 Catalase-related immune-responsive CFF04554_RS05235 PF00199 Catalase CFF04554_RS05245 PF02190 ATP-dependent protease La (LON) substrate-binding domain CFF04554_RS05245 PF05362 Lon protease (S16) C-terminal proteolytic domain CFF04554_RS05245 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS05250 PF13525 Outer membrane lipoprotein CFF04554_RS05255 PF09339 IclR helix-turn-helix domain CFF04554_RS05255 PF01614 Bacterial transcriptional regulator CFF04554_RS05265 PF08666 SAF domain CFF04554_RS05265 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CFF04554_RS05275 PF07690 Major Facilitator Superfamily CFF04554_RS05285 PF02623 FliW protein CFF04554_RS05305 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CFF04554_RS05305 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CFF04554_RS05310 PF07687 Peptidase dimerisation domain CFF04554_RS05310 PF01546 Peptidase family M20/M25/M40 CFF04554_RS05315 PF08003 Protein of unknown function (DUF1698) CFF04554_RS05320 PF03061 Thioesterase superfamily CFF04554_RS05320 PF01008 Initiation factor 2 subunit family CFF04554_RS05325 PF00753 Metallo-beta-lactamase superfamily CFF04554_RS05330 PF02540 NAD synthase CFF04554_RS05335 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFF04554_RS05340 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CFF04554_RS05345 PF00696 Amino acid kinase family CFF04554_RS05350 PF00291 Pyridoxal-phosphate dependent enzyme CFF04554_RS05355 PF02348 Cytidylyltransferase CFF04554_RS05365 PF00990 Diguanylate cyclase, GGDEF domain CFF04554_RS05370 PF00072 Response regulator receiver domain CFF04554_RS05370 PF00990 Diguanylate cyclase, GGDEF domain CFF04554_RS05375 PF00085 Thioredoxin CFF04554_RS05375 PF11412 Disulphide bond corrector protein DsbC CFF04554_RS05375 PF02683 Cytochrome C biogenesis protein transmembrane region CFF04554_RS05380 PF03976 Polyphosphate kinase 2 (PPK2) CFF04554_RS05385 PF00012 Hsp70 protein CFF04554_RS05390 PF01025 GrpE CFF04554_RS05420 PF00771 FHIPEP family CFF04554_RS05425 PF02082 Transcriptional regulator CFF04554_RS05430 PF00312 Ribosomal protein S15 CFF04554_RS05435 PF00425 chorismate binding enzyme CFF04554_RS05440 PF01063 Amino-transferase class IV CFF04554_RS05450 PF00005 ABC transporter CFF04554_RS05450 PF08402 TOBE domain CFF04554_RS05695 PF09077 Mu B transposition protein, C terminal CFF04554_RS05695 PF13401 AAA domain CFF04554_RS05735 PF13847 Methyltransferase domain CFF04554_RS05740 PF06574 FAD synthetase CFF04554_RS05740 PF01687 Riboflavin kinase CFF04554_RS05750 PF01653 NAD-dependent DNA ligase adenylation domain CFF04554_RS05750 PF00533 BRCA1 C Terminus (BRCT) domain CFF04554_RS05750 PF03120 NAD-dependent DNA ligase OB-fold domain CFF04554_RS05750 PF12826 Helix-hairpin-helix motif CFF04554_RS05755 PF00809 Pterin binding enzyme CFF04554_RS05760 PF09115 DNA polymerase III, delta subunit, C terminal CFF04554_RS05770 PF13840 ACT domain CFF04554_RS05770 PF01842 ACT domain CFF04554_RS05770 PF00696 Amino acid kinase family CFF04554_RS05775 PF00293 NUDIX domain CFF04554_RS05780 PF06969 HemN C-terminal domain CFF04554_RS05780 PF04055 Radical SAM superfamily CFF04554_RS05785 PF02416 mttA/Hcf106 family CFF04554_RS05790 PF00902 Sec-independent protein translocase protein (TatC) CFF04554_RS05795 PF02547 Queuosine biosynthesis protein CFF04554_RS05805 PF01189 16S rRNA methyltransferase RsmB/F CFF04554_RS05805 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CFF04554_RS05805 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CFF04554_RS05810 PF03652 Holliday junction resolvase CFF04554_RS05820 PF04748 Divergent polysaccharide deacetylase CFF04554_RS05825 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CFF04554_RS05825 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CFF04554_RS05835 PF00773 RNB domain CFF04554_RS05845 PF01250 Ribosomal protein S6 CFF04554_RS05850 PF00436 Single-strand binding protein family CFF04554_RS05855 PF01084 Ribosomal protein S18 CFF04554_RS05860 PF00226 DnaJ domain CFF04554_RS05860 PF00684 DnaJ central domain CFF04554_RS05860 PF01556 DnaJ C terminal domain CFF04554_RS05865 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS05865 PF00072 Response regulator receiver domain CFF04554_RS05875 PF02132 RecR protein CFF04554_RS05875 PF13662 Toprim domain CFF04554_RS05880 PF08501 Shikimate dehydrogenase substrate binding domain CFF04554_RS05895 PF00464 Serine hydroxymethyltransferase CFF04554_RS05900 PF01336 OB-fold nucleic acid binding domain CFF04554_RS05900 PF00152 tRNA synthetases class II (D, K and N) CFF04554_RS05905 PF01475 Ferric uptake regulator family CFF04554_RS05915 PF00437 Type II/IV secretion system protein CFF04554_RS05920 PF02686 Glu-tRNAGln amidotransferase C subunit CFF04554_RS05930 PF15437 Plasminogen-binding protein pgbA C-terminal CFF04554_RS05940 PF03309 Type III pantothenate kinase CFF04554_RS05945 PF01634 ATP phosphoribosyltransferase CFF04554_RS05950 PF05525 Branched-chain amino acid transport protein CFF04554_RS05955 PF00149 Calcineurin-like phosphoesterase CFF04554_RS05960 PF02666 Phosphatidylserine decarboxylase CFF04554_RS05980 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CFF04554_RS05985 PF12801 4Fe-4S binding domain CFF04554_RS05985 PF12837 4Fe-4S binding domain CFF04554_RS05990 PF12800 4Fe-4S binding domain CFF04554_RS05990 PF12838 4Fe-4S dicluster domain CFF04554_RS05995 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFF04554_RS05995 PF00384 Molybdopterin oxidoreductase CFF04554_RS05995 PF01568 Molydopterin dinucleotide binding domain CFF04554_RS06000 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS06005 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS06015 PF00005 ABC transporter CFF04554_RS06020 PF01926 50S ribosome-binding GTPase CFF04554_RS06020 PF06071 Protein of unknown function (DUF933) CFF04554_RS06025 PF00883 Cytosol aminopeptidase family, catalytic domain CFF04554_RS06035 PF00156 Phosphoribosyl transferase domain CFF04554_RS06045 PF02502 Ribose/Galactose Isomerase CFF04554_RS06050 PF02163 Peptidase family M50 CFF04554_RS06055 PF10502 Signal peptidase, peptidase S26 CFF04554_RS06060 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CFF04554_RS06060 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CFF04554_RS06070 PF00202 Aminotransferase class-III CFF04554_RS06095 PF01312 FlhB HrpN YscU SpaS Family CFF04554_RS06100 PF03717 Penicillin-binding Protein dimerisation domain CFF04554_RS06100 PF00905 Penicillin binding protein transpeptidase domain CFF04554_RS06115 PF01926 50S ribosome-binding GTPase CFF04554_RS06135 PF00475 Imidazoleglycerol-phosphate dehydratase CFF04554_RS06140 PF03330 Lytic transglycolase CFF04554_RS06140 PF05036 Sporulation related domain CFF04554_RS06145 PF00877 NlpC/P60 family CFF04554_RS06145 PF01476 LysM domain CFF04554_RS06150 PF01026 TatD related DNase CFF04554_RS06155 PF00072 Response regulator receiver domain CFF04554_RS06155 PF00990 Diguanylate cyclase, GGDEF domain CFF04554_RS06160 PF13476 AAA domain CFF04554_RS06165 PF01513 ATP-NAD kinase CFF04554_RS06170 PF02938 GAD domain CFF04554_RS06170 PF01336 OB-fold nucleic acid binding domain CFF04554_RS06170 PF00152 tRNA synthetases class II (D, K and N) CFF04554_RS06180 PF00719 Inorganic pyrophosphatase CFF04554_RS06185 PF00117 Glutamine amidotransferase class-I CFF04554_RS06185 PF03352 Methyladenine glycosylase CFF04554_RS06185 PF13302 Acetyltransferase (GNAT) domain CFF04554_RS06185 PF13673 Acetyltransferase (GNAT) domain CFF04554_RS06185 PF00958 GMP synthase C terminal domain CFF04554_RS06195 PF00005 ABC transporter CFF04554_RS06205 PF01497 Periplasmic binding protein CFF04554_RS06230 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CFF04554_RS06230 PF01266 FAD dependent oxidoreductase CFF04554_RS06235 PF01520 N-acetylmuramoyl-L-alanine amidase CFF04554_RS06240 PF00478 IMP dehydrogenase / GMP reductase domain CFF04554_RS06245 PF00579 tRNA synthetases class I (W and Y) CFF04554_RS06250 PF02824 TGS domain CFF04554_RS06250 PF04607 Region found in RelA / SpoT proteins CFF04554_RS06250 PF13291 ACT domain CFF04554_RS06255 PF01192 RNA polymerase Rpb6 CFF04554_RS06260 PF00696 Amino acid kinase family CFF04554_RS06275 PF09383 NIL domain CFF04554_RS06275 PF00005 ABC transporter CFF04554_RS06280 PF02390 Putative methyltransferase CFF04554_RS06290 PF01479 S4 domain CFF04554_RS06290 PF00849 RNA pseudouridylate synthase CFF04554_RS06295 PF01098 Cell cycle protein CFF04554_RS06300 PF02630 SCO1/SenC CFF04554_RS06310 PF01638 HxlR-like helix-turn-helix CFF04554_RS06315 PF13460 NAD(P)H-binding CFF04554_RS06325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS06325 PF08447 PAS fold CFF04554_RS06325 PF13426 PAS domain CFF04554_RS06335 PF00474 Sodium:solute symporter family CFF04554_RS06340 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS06345 PF00005 ABC transporter CFF04554_RS06350 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFF04554_RS06355 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFF04554_RS06360 PF02581 Thiamine monophosphate synthase CFF04554_RS06365 PF02673 Bacitracin resistance protein BacA CFF04554_RS06370 PF00266 Aminotransferase class-V CFF04554_RS06380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS06380 PF00512 His Kinase A (phospho-acceptor) domain CFF04554_RS06385 PF07733 Bacterial DNA polymerase III alpha NTPase domain CFF04554_RS06385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CFF04554_RS06385 PF14579 Helix-hairpin-helix motif CFF04554_RS06385 PF02811 PHP domain CFF04554_RS06390 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CFF04554_RS06395 PF00171 Aldehyde dehydrogenase family CFF04554_RS06395 PF01619 Proline dehydrogenase CFF04554_RS06395 PF14850 DNA-binding domain of Proline dehydrogenase CFF04554_RS06395 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CFF04554_RS06400 PF00474 Sodium:solute symporter family CFF04554_RS06405 PF03264 NapC/NirT cytochrome c family, N-terminal region CFF04554_RS06410 PF02335 Cytochrome c552 CFF04554_RS06415 PF01965 DJ-1/PfpI family CFF04554_RS06420 PF09285 Elongation factor P, C-terminal CFF04554_RS06420 PF01132 Elongation factor P (EF-P) OB domain CFF04554_RS06420 PF08207 Elongation factor P (EF-P) KOW-like domain CFF04554_RS06425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFF04554_RS06425 PF01842 ACT domain CFF04554_RS06425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFF04554_RS06435 PF00575 S1 RNA binding domain CFF04554_RS06440 PF02401 LytB protein CFF04554_RS06445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFF04554_RS06450 PF03483 B3/4 domain CFF04554_RS06450 PF03147 Ferredoxin-fold anticodon binding domain CFF04554_RS06450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CFF04554_RS06450 PF03484 tRNA synthetase B5 domain CFF04554_RS06450 PF01588 Putative tRNA binding domain CFF04554_RS06455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CFF04554_RS06455 PF01409 tRNA synthetases class II core domain (F) CFF04554_RS06460 PF01230 HIT domain CFF04554_RS06470 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CFF04554_RS06470 PF00013 KH domain CFF04554_RS06470 PF03725 3' exoribonuclease family, domain 2 CFF04554_RS06470 PF00575 S1 RNA binding domain CFF04554_RS06470 PF01138 3' exoribonuclease family, domain 1 CFF04554_RS06490 PF02843 Phosphoribosylglycinamide synthetase, C domain CFF04554_RS06490 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CFF04554_RS06490 PF02844 Phosphoribosylglycinamide synthetase, N domain CFF04554_RS06505 PF02540 NAD synthase CFF04554_RS06505 PF00117 Glutamine amidotransferase class-I CFF04554_RS06505 PF00958 GMP synthase C terminal domain CFF04554_RS06515 PF01541 GIY-YIG catalytic domain CFF04554_RS06515 PF02151 UvrB/uvrC motif CFF04554_RS06515 PF08459 UvrC Helix-hairpin-helix N-terminal CFF04554_RS06525 PF01627 Hpt domain CFF04554_RS06525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CFF04554_RS06525 PF00072 Response regulator receiver domain CFF04554_RS06525 PF00512 His Kinase A (phospho-acceptor) domain CFF04554_RS06525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS06525 PF00672 HAMP domain CFF04554_RS06530 PF01339 CheB methylesterase CFF04554_RS06530 PF00072 Response regulator receiver domain CFF04554_RS06535 PF01243 Pyridoxamine 5'-phosphate oxidase CFF04554_RS06570 PF00474 Sodium:solute symporter family CFF04554_RS06575 PF03061 Thioesterase superfamily CFF04554_RS06580 PF01641 SelR domain CFF04554_RS06580 PF01625 Peptide methionine sulfoxide reductase CFF04554_RS06590 PF00137 ATP synthase subunit C CFF04554_RS06600 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CFF04554_RS06610 PF06719 AraC-type transcriptional regulator N-terminus CFF04554_RS06610 PF12833 Helix-turn-helix domain CFF04554_RS06615 PF00465 Iron-containing alcohol dehydrogenase CFF04554_RS06620 PF12833 Helix-turn-helix domain CFF04554_RS06640 PF00209 Sodium:neurotransmitter symporter family CFF04554_RS06645 PF00364 Biotin-requiring enzyme CFF04554_RS06645 PF00682 HMGL-like CFF04554_RS06645 PF02436 Conserved carboxylase domain CFF04554_RS06650 PF01293 Phosphoenolpyruvate carboxykinase CFF04554_RS06655 PF14698 Argininosuccinate lyase C-terminal CFF04554_RS06655 PF00206 Lyase CFF04554_RS06670 PF02525 Flavodoxin-like fold CFF04554_RS06680 PF07731 Multicopper oxidase CFF04554_RS06680 PF07732 Multicopper oxidase CFF04554_RS06705 PF03764 Elongation factor G, domain IV CFF04554_RS06705 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS06705 PF03144 Elongation factor Tu domain 2 CFF04554_RS06705 PF00679 Elongation factor G C-terminus CFF04554_RS06705 PF14492 Elongation Factor G, domain II CFF04554_RS06710 PF00177 Ribosomal protein S7p/S5e CFF04554_RS06715 PF00164 Ribosomal protein S12/S23 CFF04554_RS06720 PF04998 RNA polymerase Rpb1, domain 5 CFF04554_RS06720 PF05000 RNA polymerase Rpb1, domain 4 CFF04554_RS06720 PF04997 RNA polymerase Rpb1, domain 1 CFF04554_RS06720 PF04983 RNA polymerase Rpb1, domain 3 CFF04554_RS06720 PF00623 RNA polymerase Rpb1, domain 2 CFF04554_RS06725 PF04565 RNA polymerase Rpb2, domain 3 CFF04554_RS06725 PF04560 RNA polymerase Rpb2, domain 7 CFF04554_RS06725 PF10385 RNA polymerase beta subunit external 1 domain CFF04554_RS06725 PF04561 RNA polymerase Rpb2, domain 2 CFF04554_RS06725 PF00562 RNA polymerase Rpb2, domain 6 CFF04554_RS06725 PF04563 RNA polymerase beta subunit CFF04554_RS06730 PF16320 Ribosomal protein L7/L12 dimerisation domain CFF04554_RS06730 PF00542 Ribosomal protein L7/L12 C-terminal domain CFF04554_RS06735 PF00466 Ribosomal protein L10 CFF04554_RS06740 PF00687 Ribosomal protein L1p/L10e family CFF04554_RS06745 PF03946 Ribosomal protein L11, N-terminal domain CFF04554_RS06745 PF00298 Ribosomal protein L11, RNA binding domain CFF04554_RS06750 PF02357 Transcription termination factor nusG CFF04554_RS06765 PF00471 Ribosomal protein L33 CFF04554_RS06770 PF03143 Elongation factor Tu C-terminal domain CFF04554_RS06770 PF03144 Elongation factor Tu domain 2 CFF04554_RS06770 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS06795 PF00080 Copper/zinc superoxide dismutase (SODC) CFF04554_RS06805 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CFF04554_RS06810 PF01029 NusB family CFF04554_RS06815 PF00885 6,7-dimethyl-8-ribityllumazine synthase CFF04554_RS06820 PF00893 Small Multidrug Resistance protein CFF04554_RS06830 PF00793 DAHP synthetase I family CFF04554_RS06835 PF00892 EamA-like transporter family CFF04554_RS06840 PF01926 50S ribosome-binding GTPase CFF04554_RS06840 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CFF04554_RS06845 PF01202 Shikimate kinase CFF04554_RS06850 PF00579 tRNA synthetases class I (W and Y) CFF04554_RS06855 PF02403 Seryl-tRNA synthetase N-terminal domain CFF04554_RS06855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFF04554_RS06865 PF00682 HMGL-like CFF04554_RS06865 PF08502 LeuA allosteric (dimerisation) domain CFF04554_RS06870 PF01066 CDP-alcohol phosphatidyltransferase CFF04554_RS06875 PF02666 Phosphatidylserine decarboxylase CFF04554_RS06880 PF17862 AAA+ lid domain CFF04554_RS06880 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS06880 PF01434 Peptidase family M41 CFF04554_RS06890 PF00072 Response regulator receiver domain CFF04554_RS06895 PF00977 Histidine biosynthesis protein CFF04554_RS06900 PF00117 Glutamine amidotransferase class-I CFF04554_RS06910 PF02719 Polysaccharide biosynthesis protein CFF04554_RS06915 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFF04554_RS06920 PF02525 Flavodoxin-like fold CFF04554_RS06930 PF08245 Mur ligase middle domain CFF04554_RS06935 PF00953 Glycosyl transferase family 4 CFF04554_RS06935 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CFF04554_RS06940 PF01676 Metalloenzyme superfamily CFF04554_RS06940 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CFF04554_RS06950 PF00550 Phosphopantetheine attachment site CFF04554_RS06955 PF00109 Beta-ketoacyl synthase, N-terminal domain CFF04554_RS06955 PF02801 Beta-ketoacyl synthase, C-terminal domain CFF04554_RS06960 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CFF04554_RS06970 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFF04554_RS06970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFF04554_RS06980 PF03462 PCRF domain CFF04554_RS06980 PF00472 RF-1 domain CFF04554_RS06985 PF02569 Pantoate-beta-alanine ligase CFF04554_RS06990 PF18693 TRAM domain CFF04554_RS06990 PF00919 Uncharacterized protein family UPF0004 CFF04554_RS06990 PF04055 Radical SAM superfamily CFF04554_RS06995 PF01171 PP-loop family CFF04554_RS07015 PF04028 Domain of unknown function (DUF374) CFF04554_RS07020 PF01938 TRAM domain CFF04554_RS07020 PF00919 Uncharacterized protein family UPF0004 CFF04554_RS07020 PF04055 Radical SAM superfamily CFF04554_RS07030 PF08529 NusA N-terminal domain CFF04554_RS07030 PF13184 NusA-like KH domain CFF04554_RS07040 PF02397 Bacterial sugar transferase CFF04554_RS07045 PF13477 Glycosyl transferase 4-like CFF04554_RS07045 PF00534 Glycosyl transferases group 1 CFF04554_RS07050 PF02516 Oligosaccharyl transferase STT3 subunit CFF04554_RS07050 PF18527 STT3/PglB C-terminal beta-barrel domain CFF04554_RS07055 PF00534 Glycosyl transferases group 1 CFF04554_RS07055 PF13439 Glycosyltransferase Family 4 CFF04554_RS07060 PF13439 Glycosyltransferase Family 4 CFF04554_RS07060 PF00534 Glycosyl transferases group 1 CFF04554_RS07065 PF00534 Glycosyl transferases group 1 CFF04554_RS07065 PF13439 Glycosyltransferase Family 4 CFF04554_RS07070 PF14667 Polysaccharide biosynthesis C-terminal domain CFF04554_RS07070 PF01943 Polysaccharide biosynthesis protein CFF04554_RS07075 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFF04554_RS07075 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFF04554_RS07075 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFF04554_RS07080 PF01370 NAD dependent epimerase/dehydratase family CFF04554_RS07100 PF01370 NAD dependent epimerase/dehydratase family CFF04554_RS07105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFF04554_RS07105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFF04554_RS07105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFF04554_RS07125 PF00535 Glycosyl transferase family 2 CFF04554_RS07130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS07135 PF01522 Polysaccharide deacetylase CFF04554_RS07155 PF00534 Glycosyl transferases group 1 CFF04554_RS07155 PF13439 Glycosyltransferase Family 4 CFF04554_RS07160 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS07175 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS07180 PF13580 SIS domain CFF04554_RS07190 PF00294 pfkB family carbohydrate kinase CFF04554_RS07190 PF01467 Cytidylyltransferase-like CFF04554_RS07195 PF01370 NAD dependent epimerase/dehydratase family CFF04554_RS07200 PF08645 Polynucleotide kinase 3 phosphatase CFF04554_RS07210 PF00082 Subtilase family CFF04554_RS07210 PF12951 Passenger-associated-transport-repeat CFF04554_RS07210 PF03797 Autotransporter beta-domain CFF04554_RS07225 PF00403 Heavy-metal-associated domain CFF04554_RS07235 PF07498 Rho termination factor, N-terminal domain CFF04554_RS07235 PF07497 Rho termination factor, RNA-binding domain CFF04554_RS07235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFF04554_RS07240 PF12169 DNA polymerase III subunits gamma and tau domain III CFF04554_RS07240 PF12170 DNA polymerase III tau subunit V interacting with alpha CFF04554_RS07240 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CFF04554_RS07270 PF00121 Triosephosphate isomerase CFF04554_RS07275 PF00162 Phosphoglycerate kinase CFF04554_RS07280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CFF04554_RS07280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFF04554_RS07285 PF01467 Cytidylyltransferase-like CFF04554_RS07295 PF03601 Conserved hypothetical protein 698 CFF04554_RS07300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFF04554_RS07300 PF03466 LysR substrate binding domain CFF04554_RS07305 PF00750 tRNA synthetases class I (R) CFF04554_RS07305 PF03485 Arginyl tRNA synthetase N terminal domain CFF04554_RS07305 PF05746 DALR anticodon binding domain CFF04554_RS07310 PF02416 mttA/Hcf106 family CFF04554_RS07315 PF00625 Guanylate kinase CFF04554_RS07325 PF01311 Bacterial export proteins, family 1 CFF04554_RS07335 PF00005 ABC transporter CFF04554_RS07340 PF00889 Elongation factor TS CFF04554_RS07345 PF00318 Ribosomal protein S2 CFF04554_RS07355 PF02578 Multi-copper polyphenol oxidoreductase laccase CFF04554_RS07360 PF00677 Lumazine binding domain CFF04554_RS07365 PF01134 Glucose inhibited division protein A CFF04554_RS07365 PF13932 GidA associated domain CFF04554_RS07370 PF00355 Rieske [2Fe-2S] domain CFF04554_RS07370 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CFF04554_RS07375 PF00032 Cytochrome b(C-terminal)/b6/petD CFF04554_RS07375 PF00033 Cytochrome b/b6/petB CFF04554_RS07425 PF04055 Radical SAM superfamily CFF04554_RS07430 PF01208 Uroporphyrinogen decarboxylase (URO-D) CFF04554_RS07440 PF02774 Semialdehyde dehydrogenase, dimerisation domain CFF04554_RS07440 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFF04554_RS07445 PF00158 Sigma-54 interaction domain CFF04554_RS07445 PF00072 Response regulator receiver domain CFF04554_RS07460 PF03989 DNA gyrase C-terminal domain, beta-propeller CFF04554_RS07460 PF00521 DNA gyrase/topoisomerase IV, subunit A CFF04554_RS07505 PF01361 Tautomerase enzyme CFF04554_RS07510 PF00679 Elongation factor G C-terminus CFF04554_RS07510 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS07510 PF06421 GTP-binding protein LepA C-terminus CFF04554_RS07510 PF03144 Elongation factor Tu domain 2 CFF04554_RS07515 PF14572 Phosphoribosyl synthetase-associated domain CFF04554_RS07515 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CFF04554_RS07520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFF04554_RS07520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFF04554_RS07525 PF01979 Amidohydrolase family CFF04554_RS07535 PF07963 Prokaryotic N-terminal methylation motif CFF04554_RS07535 PF08334 Type II secretion system (T2SS), protein G CFF04554_RS07560 PF03641 Possible lysine decarboxylase CFF04554_RS07565 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFF04554_RS07565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CFF04554_RS07570 PF01493 GXGXG motif CFF04554_RS07570 PF01645 Conserved region in glutamate synthase CFF04554_RS07570 PF04898 Glutamate synthase central domain CFF04554_RS07570 PF00310 Glutamine amidotransferases class-II CFF04554_RS07575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CFF04554_RS07575 PF01872 RibD C-terminal domain CFF04554_RS07590 PF17384 RimP C-terminal SH3 domain CFF04554_RS07590 PF02576 RimP N-terminal domain CFF04554_RS07595 PF02033 Ribosome-binding factor A CFF04554_RS07600 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS07600 PF04760 Translation initiation factor IF-2, N-terminal region CFF04554_RS07600 PF11987 Translation-initiation factor 2 CFF04554_RS07610 PF00288 GHMP kinases N terminal domain CFF04554_RS07620 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CFF04554_RS07625 PF02567 Phenazine biosynthesis-like protein CFF04554_RS07635 PF02153 Prephenate dehydrogenase CFF04554_RS07635 PF01842 ACT domain CFF04554_RS07640 PF07244 Surface antigen variable number repeat CFF04554_RS07640 PF01103 Surface antigen CFF04554_RS07645 PF03473 MOSC domain CFF04554_RS07650 PF01343 Peptidase family S49 CFF04554_RS07655 PF01979 Amidohydrolase family CFF04554_RS07660 PF01220 Dehydroquinase class II CFF04554_RS07665 PF00557 Metallopeptidase family M24 CFF04554_RS07665 PF01321 Creatinase/Prolidase N-terminal domain CFF04554_RS07670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CFF04554_RS07675 PF00448 SRP54-type protein, GTPase domain CFF04554_RS07680 PF10609 NUBPL iron-transfer P-loop NTPase CFF04554_RS07690 PF04542 Sigma-70 region 2 CFF04554_RS07690 PF04539 Sigma-70 region 3 CFF04554_RS07690 PF04545 Sigma-70, region 4 CFF04554_RS07695 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CFF04554_RS07695 PF02154 Flagellar motor switch protein FliM CFF04554_RS07700 PF04509 CheC-like family CFF04554_RS07700 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CFF04554_RS07705 PF01171 PP-loop family CFF04554_RS07710 PF01048 Phosphorylase superfamily CFF04554_RS07715 PF00698 Acyl transferase domain CFF04554_RS07720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFF04554_RS07735 PF04052 TolB amino-terminal domain CFF04554_RS07745 PF02472 Biopolymer transport protein ExbD/TolR CFF04554_RS07750 PF01618 MotA/TolQ/ExbB proton channel family CFF04554_RS07755 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CFF04554_RS07760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFF04554_RS07760 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFF04554_RS07765 PF00231 ATP synthase CFF04554_RS07770 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFF04554_RS07770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFF04554_RS07770 PF00306 ATP synthase alpha/beta chain, C terminal domain CFF04554_RS07775 PF00213 ATP synthase delta (OSCP) subunit CFF04554_RS07780 PF00430 ATP synthase B/B' CF(0) CFF04554_RS07785 PF00430 ATP synthase B/B' CF(0) CFF04554_RS07790 PF17762 HTH domain found in ParB protein CFF04554_RS07790 PF02195 ParB-like nuclease domain CFF04554_RS07795 PF13614 AAA domain CFF04554_RS07800 PF02237 Biotin protein ligase C terminal domain CFF04554_RS07800 PF03099 Biotin/lipoate A/B protein ligase family CFF04554_RS07800 PF08279 HTH domain CFF04554_RS07805 PF00551 Formyl transferase CFF04554_RS07805 PF02911 Formyl transferase, C-terminal domain CFF04554_RS07810 PF00696 Amino acid kinase family CFF04554_RS07815 PF01018 GTP1/OBG CFF04554_RS07815 PF01926 50S ribosome-binding GTPase CFF04554_RS07820 PF01016 Ribosomal L27 protein CFF04554_RS07825 PF00829 Ribosomal prokaryotic L21 protein CFF04554_RS07830 PF00034 Cytochrome c CFF04554_RS07830 PF03150 Di-haem cytochrome c peroxidase CFF04554_RS07835 PF13247 4Fe-4S dicluster domain CFF04554_RS07840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFF04554_RS07840 PF01568 Molydopterin dinucleotide binding domain CFF04554_RS07840 PF00384 Molybdopterin oxidoreductase CFF04554_RS07845 PF01568 Molydopterin dinucleotide binding domain CFF04554_RS07845 PF00384 Molybdopterin oxidoreductase CFF04554_RS07845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFF04554_RS07865 PF03841 L-seryl-tRNA selenium transferase CFF04554_RS07870 PF09106 Elongation factor SelB, winged helix CFF04554_RS07870 PF03144 Elongation factor Tu domain 2 CFF04554_RS07870 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS07870 PF09107 Elongation factor SelB, winged helix CFF04554_RS07870 PF09105 Elongation factor SelB, winged helix CFF04554_RS07880 PF02348 Cytidylyltransferase CFF04554_RS07905 PF08666 SAF domain CFF04554_RS07905 PF03102 NeuB family CFF04554_RS07910 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFF04554_RS07910 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CFF04554_RS07915 PF02621 Menaquinone biosynthesis CFF04554_RS07925 PF00390 Malic enzyme, N-terminal domain CFF04554_RS07925 PF01515 Phosphate acetyl/butaryl transferase CFF04554_RS07925 PF03949 Malic enzyme, NAD binding domain CFF04554_RS07935 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFF04554_RS07945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFF04554_RS07945 PF00289 Biotin carboxylase, N-terminal domain CFF04554_RS07945 PF02785 Biotin carboxylase C-terminal domain CFF04554_RS07950 PF00364 Biotin-requiring enzyme CFF04554_RS07955 PF00692 dUTPase CFF04554_RS07960 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFF04554_RS07970 PF14748 Pyrroline-5-carboxylate reductase dimerisation CFF04554_RS07970 PF03807 NADP oxidoreductase coenzyme F420-dependent CFF04554_RS07980 PF06969 HemN C-terminal domain CFF04554_RS07980 PF04055 Radical SAM superfamily CFF04554_RS07985 PF10788 Protein of unknown function (DUF2603) CFF04554_RS07990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFF04554_RS07990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFF04554_RS07995 PF00490 Delta-aminolevulinic acid dehydratase CFF04554_RS08000 PF00925 GTP cyclohydrolase II CFF04554_RS08005 PF02527 rRNA small subunit methyltransferase G CFF04554_RS08020 PF01435 Peptidase family M48 CFF04554_RS08025 PF01168 Alanine racemase, N-terminal domain CFF04554_RS08025 PF00842 Alanine racemase, C-terminal domain CFF04554_RS08065 PF00456 Transketolase, thiamine diphosphate binding domain CFF04554_RS08105 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFF04554_RS08110 PF02911 Formyl transferase, C-terminal domain CFF04554_RS08110 PF00551 Formyl transferase CFF04554_RS08115 PF12464 Maltose acetyltransferase CFF04554_RS08115 PF14602 Hexapeptide repeat of succinyl-transferase CFF04554_RS08115 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS08130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS08145 PF13537 Glutamine amidotransferase domain CFF04554_RS08145 PF00733 Asparagine synthase CFF04554_RS08150 PF00534 Glycosyl transferases group 1 CFF04554_RS08150 PF13439 Glycosyltransferase Family 4 CFF04554_RS08170 PF00534 Glycosyl transferases group 1 CFF04554_RS08175 PF13537 Glutamine amidotransferase domain CFF04554_RS08175 PF00733 Asparagine synthase CFF04554_RS08235 PF13649 Methyltransferase domain CFF04554_RS08240 PF00391 PEP-utilising enzyme, mobile domain CFF04554_RS08240 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CFF04554_RS08245 PF02540 NAD synthase CFF04554_RS08245 PF00958 GMP synthase C terminal domain CFF04554_RS08245 PF00117 Glutamine amidotransferase class-I CFF04554_RS08250 PF00483 Nucleotidyl transferase CFF04554_RS08255 PF02719 Polysaccharide biosynthesis protein CFF04554_RS08260 PF13302 Acetyltransferase (GNAT) domain CFF04554_RS08265 PF00669 Bacterial flagellin N-terminal helical region CFF04554_RS08265 PF00700 Bacterial flagellin C-terminal helical region CFF04554_RS08265 PF07196 Flagellin hook IN motif CFF04554_RS08270 PF00669 Bacterial flagellin N-terminal helical region CFF04554_RS08270 PF00700 Bacterial flagellin C-terminal helical region CFF04554_RS08270 PF07196 Flagellin hook IN motif CFF04554_RS08275 PF13847 Methyltransferase domain CFF04554_RS08290 PF01594 AI-2E family transporter CFF04554_RS08295 PF02386 Cation transport protein CFF04554_RS08300 PF02080 TrkA-C domain CFF04554_RS08300 PF02254 TrkA-N domain CFF04554_RS08305 PF10415 Fumarase C C-terminus CFF04554_RS08305 PF00206 Lyase CFF04554_RS08310 PF03605 Anaerobic c4-dicarboxylate membrane transporter CFF04554_RS08325 PF07715 TonB-dependent Receptor Plug Domain CFF04554_RS08325 PF00593 TonB dependent receptor CFF04554_RS08330 PF01618 MotA/TolQ/ExbB proton channel family CFF04554_RS08335 PF02472 Biopolymer transport protein ExbD/TolR CFF04554_RS08340 PF03544 Gram-negative bacterial TonB protein C-terminal CFF04554_RS08345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFF04554_RS08350 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS08355 PF12911 N-terminal TM domain of oligopeptide transport permease C CFF04554_RS08355 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS08360 PF00005 ABC transporter CFF04554_RS08365 PF00005 ABC transporter CFF04554_RS08390 PF03738 Glutathionylspermidine synthase preATP-grasp CFF04554_RS08395 PF02441 Flavoprotein CFF04554_RS08400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFF04554_RS08400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFF04554_RS08405 PF04461 Protein of unknown function (DUF520) CFF04554_RS08410 PF01323 DSBA-like thioredoxin domain CFF04554_RS08415 PF04055 Radical SAM superfamily CFF04554_RS08415 PF06969 HemN C-terminal domain CFF04554_RS08420 PF17862 AAA+ lid domain CFF04554_RS08420 PF01434 Peptidase family M41 CFF04554_RS08420 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS08425 PF13193 AMP-binding enzyme C-terminal domain CFF04554_RS08425 PF00501 AMP-binding enzyme CFF04554_RS08435 PF01261 Xylose isomerase-like TIM barrel CFF04554_RS08510 PF03741 Integral membrane protein TerC family CFF04554_RS08515 PF00551 Formyl transferase CFF04554_RS08520 PF03853 YjeF-related protein N-terminus CFF04554_RS08520 PF01256 Carbohydrate kinase CFF04554_RS08525 PF01078 Magnesium chelatase, subunit ChlI CFF04554_RS08525 PF13335 Magnesium chelatase, subunit ChlI C-terminal CFF04554_RS08530 PF01327 Polypeptide deformylase CFF04554_RS08540 PF00574 Clp protease CFF04554_RS08545 PF05698 Bacterial trigger factor protein (TF) C-terminus CFF04554_RS08545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFF04554_RS08545 PF05697 Bacterial trigger factor protein (TF) CFF04554_RS08550 PF01227 GTP cyclohydrolase I CFF04554_RS08555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFF04554_RS08555 PF18269 T3SS EscN ATPase C-terminal domain CFF04554_RS08560 PF00266 Aminotransferase class-V CFF04554_RS08565 PF04324 BFD-like [2Fe-2S] binding domain CFF04554_RS08565 PF01106 NifU-like domain CFF04554_RS08565 PF01592 NifU-like N terminal domain CFF04554_RS08585 PF05198 Translation initiation factor IF-3, N-terminal domain CFF04554_RS08585 PF00707 Translation initiation factor IF-3, C-terminal domain CFF04554_RS08590 PF03129 Anticodon binding domain CFF04554_RS08590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFF04554_RS08590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFF04554_RS08640 PF03653 Uncharacterised protein family (UPF0093) CFF04554_RS08650 PF01252 Signal peptidase (SPase) II CFF04554_RS08655 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFF04554_RS08655 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFF04554_RS08655 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFF04554_RS08655 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFF04554_RS08660 PF01649 Ribosomal protein S20 CFF04554_RS08665 PF03462 PCRF domain CFF04554_RS08665 PF00472 RF-1 domain CFF04554_RS08670 PF04237 YjbR CFF04554_RS08680 PF03372 Endonuclease/Exonuclease/phosphatase family CFF04554_RS08685 PF00884 Sulfatase CFF04554_RS08685 PF08019 Phosphoethanolamine transferase EptA/EptB CFF04554_RS08690 PF01219 Prokaryotic diacylglycerol kinase CFF04554_RS08700 PF02659 Putative manganese efflux pump CFF04554_RS08710 PF00950 ABC 3 transport family CFF04554_RS08715 PF00005 ABC transporter CFF04554_RS08725 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CFF04554_RS08735 PF00034 Cytochrome c CFF04554_RS08735 PF03150 Di-haem cytochrome c peroxidase CFF04554_RS08740 PF05231 MASE1 CFF04554_RS08740 PF00563 EAL domain CFF04554_RS08745 PF00484 Carbonic anhydrase CFF04554_RS08750 PF00924 Mechanosensitive ion channel CFF04554_RS08765 PF01264 Chorismate synthase CFF04554_RS08770 PF14622 Ribonuclease-III-like CFF04554_RS08770 PF00035 Double-stranded RNA binding motif CFF04554_RS08775 PF00075 RNase H CFF04554_RS08785 PF01807 CHC2 zinc finger CFF04554_RS08785 PF08275 DNA primase catalytic core, N-terminal domain CFF04554_RS08805 PF13726 Na+-H+ antiporter family CFF04554_RS08805 PF03553 Na+/H+ antiporter family CFF04554_RS08815 PF03062 MBOAT, membrane-bound O-acyltransferase family CFF04554_RS08820 PF00920 Dehydratase family CFF04554_RS08825 PF02872 5'-nucleotidase, C-terminal domain CFF04554_RS08825 PF00149 Calcineurin-like phosphoesterase CFF04554_RS08830 PF00117 Glutamine amidotransferase class-I CFF04554_RS08830 PF06418 CTP synthase N-terminus CFF04554_RS08835 PF01368 DHH family CFF04554_RS08835 PF02272 DHHA1 domain CFF04554_RS08835 PF17768 RecJ OB domain CFF04554_RS08840 PF06965 Na+/H+ antiporter 1 CFF04554_RS08845 PF00005 ABC transporter CFF04554_RS08850 PF10615 Protein of unknown function (DUF2470) CFF04554_RS08850 PF01243 Pyridoxamine 5'-phosphate oxidase CFF04554_RS08855 PF07715 TonB-dependent Receptor Plug Domain CFF04554_RS08855 PF00593 TonB dependent receptor CFF04554_RS08860 PF01032 FecCD transport family CFF04554_RS08865 PF00005 ABC transporter CFF04554_RS08870 PF01497 Periplasmic binding protein CFF04554_RS08895 PF00460 Flagella basal body rod protein CFF04554_RS08895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS08895 PF07196 Flagellin hook IN motif CFF04554_RS08895 PF07559 Flagellar basal body protein FlaE CFF04554_RS08900 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CFF04554_RS08900 PF13457 GW (Gly-Tryp) dipeptide domain CFF04554_RS08905 PF01678 Diaminopimelate epimerase CFF04554_RS08910 PF01121 Dephospho-CoA kinase CFF04554_RS08915 PF01042 Endoribonuclease L-PSP CFF04554_RS08920 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS08920 PF02769 AIR synthase related protein, C-terminal domain CFF04554_RS08930 PF05496 Holliday junction DNA helicase RuvB P-loop domain CFF04554_RS08930 PF12002 MgsA AAA+ ATPase C terminal CFF04554_RS08930 PF01661 Macro domain CFF04554_RS08930 PF16193 AAA C-terminal domain CFF04554_RS08935 PF00892 EamA-like transporter family CFF04554_RS08940 PF08534 Redoxin CFF04554_RS08950 PF00156 Phosphoribosyl transferase domain CFF04554_RS08955 PF01765 Ribosome recycling factor CFF04554_RS08965 PF03840 Preprotein translocase SecG subunit CFF04554_RS08970 PF01027 Inhibitor of apoptosis-promoting Bax1 CFF04554_RS09010 PF02525 Flavodoxin-like fold CFF04554_RS09030 PF02511 Thymidylate synthase complementing protein CFF04554_RS09035 PF05199 GMC oxidoreductase CFF04554_RS09035 PF00732 GMC oxidoreductase CFF04554_RS09045 PF07681 DoxX CFF04554_RS09050 PF00881 Nitroreductase family CFF04554_RS09065 PF00849 RNA pseudouridylate synthase CFF04554_RS09065 PF01479 S4 domain CFF04554_RS09070 PF00571 CBS domain CFF04554_RS09070 PF01380 SIS domain CFF04554_RS09075 PF00753 Metallo-beta-lactamase superfamily CFF04554_RS09075 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CFF04554_RS09075 PF17770 Ribonuclease J C-terminal domain CFF04554_RS09080 PF00398 Ribosomal RNA adenine dimethylase CFF04554_RS09085 PF05977 Transmembrane secretion effector CFF04554_RS09090 PF00977 Histidine biosynthesis protein CFF04554_RS09100 PF04055 Radical SAM superfamily CFF04554_RS09110 PF00849 RNA pseudouridylate synthase CFF04554_RS09115 PF00206 Lyase CFF04554_RS09115 PF10397 Adenylosuccinate lyase C-terminus CFF04554_RS09120 PF00317 Ribonucleotide reductase, all-alpha domain CFF04554_RS09120 PF03477 ATP cone domain CFF04554_RS09120 PF02867 Ribonucleotide reductase, barrel domain CFF04554_RS09125 PF00324 Amino acid permease CFF04554_RS09130 PF02075 Crossover junction endodeoxyribonuclease RuvC CFF04554_RS09140 PF11638 DnaA N-terminal domain CFF04554_RS09140 PF00308 Bacterial dnaA protein CFF04554_RS09140 PF08299 Bacterial dnaA protein helix-turn-helix CFF04554_RS09305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS09305 PF08447 PAS fold CFF04554_RS09305 PF13426 PAS domain CFF04554_RS09340 PF00271 Helicase conserved C-terminal domain CFF04554_RS09340 PF00270 DEAD/DEAH box helicase CFF04554_RS09345 PF13847 Methyltransferase domain CFF04554_RS09345 PF10119 Predicted methyltransferase regulatory domain CFF04554_RS09365 PF09669 Phage regulatory protein Rha (Phage_pRha) CFF04554_RS09365 PF10549 ORF11CD3 domain CFF04554_RS09385 PF08447 PAS fold CFF04554_RS09385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS09385 PF13426 PAS domain CFF04554_RS09390 PF13426 PAS domain CFF04554_RS09390 PF08447 PAS fold CFF04554_RS09390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS09405 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 CFF04554_RS09405 PF00535 Glycosyl transferase family 2 CFF04554_RS09410 PF13426 PAS domain CFF04554_RS09410 PF08447 PAS fold CFF04554_RS09410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS09415 PF02872 5'-nucleotidase, C-terminal domain CFF04554_RS09415 PF00149 Calcineurin-like phosphoesterase