CFF04554_RS00005 PF00308 Bacterial dnaA protein CFF04554_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CFF04554_RS00005 PF11638 DnaA N-terminal domain CFF04554_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CFF04554_RS00010 PF02767 DNA polymerase III beta subunit, central domain CFF04554_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CFF04554_RS00015 PF00204 DNA gyrase B CFF04554_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CFF04554_RS00015 PF01751 Toprim domain CFF04554_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS00020 PF00563 EAL domain CFF04554_RS00025 PF14489 QueF-like protein CFF04554_RS00030 PF13023 HD domain CFF04554_RS00040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS00045 PF03963 CFF04554_RS00045 CFF04554_RS00045 PF13860 FlgD Ig-like domain CFF04554_RS00055 PF07690 Major Facilitator Superfamily CFF04554_RS00060 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS00060 PF00679 Elongation factor G C-terminus CFF04554_RS00060 PF03144 Elongation factor Tu domain 2 CFF04554_RS00075 PF01351 Ribonuclease HII CFF04554_RS00080 PF04332 CFF04554_RS00080 CFF04554_RS00085 PF00005 ABC transporter CFF04554_RS00090 PF08238 Sel1 repeat CFF04554_RS00095 PF01545 Cation efflux family CFF04554_RS00100 PF03477 ATP cone domain CFF04554_RS00100 PF13597 Anaerobic ribonucleoside-triphosphate reductase CFF04554_RS00105 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CFF04554_RS00110 PF13597 Anaerobic ribonucleoside-triphosphate reductase CFF04554_RS00115 PF04055 Radical SAM superfamily CFF04554_RS00115 PF13353 4Fe-4S single cluster domain CFF04554_RS00120 PF03498 Cytolethal distending toxin A/C family CFF04554_RS00125 PF03372 Endonuclease/Exonuclease/phosphatase family CFF04554_RS00130 PF03498 Cytolethal distending toxin A/C family CFF04554_RS00140 PF00268 Ribonucleotide reductase, small chain CFF04554_RS00145 PF00795 Carbon-nitrogen hydrolase CFF04554_RS00150 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CFF04554_RS00155 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CFF04554_RS00155 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CFF04554_RS00160 PF00338 Ribosomal protein S10p/S20e CFF04554_RS00165 PF00297 Ribosomal protein L3 CFF04554_RS00170 PF00573 Ribosomal protein L4/L1 family CFF04554_RS00175 PF00276 Ribosomal protein L23 CFF04554_RS00180 PF00181 Ribosomal Proteins L2, RNA binding domain CFF04554_RS00180 PF03947 Ribosomal Proteins L2, C-terminal domain CFF04554_RS00185 PF00203 Ribosomal protein S19 CFF04554_RS00190 PF00237 Ribosomal protein L22p/L17e CFF04554_RS00195 PF00189 Ribosomal protein S3, C-terminal domain CFF04554_RS00195 PF07650 KH domain CFF04554_RS00200 PF00252 Ribosomal protein L16p/L10e CFF04554_RS00205 PF00831 Ribosomal L29 protein CFF04554_RS00210 PF00366 Ribosomal protein S17 CFF04554_RS00215 PF00238 Ribosomal protein L14p/L23e CFF04554_RS00220 PF00467 KOW motif CFF04554_RS00220 PF17136 CFF04554_RS00220 CFF04554_RS00225 PF00281 Ribosomal protein L5 CFF04554_RS00225 PF00673 ribosomal L5P family C-terminus CFF04554_RS00230 PF00253 Ribosomal protein S14p/S29e CFF04554_RS00235 PF00410 Ribosomal protein S8 CFF04554_RS00240 PF00347 Ribosomal protein L6 CFF04554_RS00245 PF00861 Ribosomal L18p/L5e family CFF04554_RS00250 PF00333 Ribosomal protein S5, N-terminal domain CFF04554_RS00250 PF03719 Ribosomal protein S5, C-terminal domain CFF04554_RS00255 PF00828 Ribosomal protein L18e/L15 CFF04554_RS00260 PF00344 SecY translocase CFF04554_RS00265 PF00557 Metallopeptidase family M24 CFF04554_RS00270 PF01176 Translation initiation factor 1A / IF-1 CFF04554_RS00275 PF00444 Ribosomal protein L36 CFF04554_RS00280 PF00416 Ribosomal protein S13/S18 CFF04554_RS00285 PF00411 Ribosomal protein S11 CFF04554_RS00290 PF00163 Ribosomal protein S4/S9 N-terminal domain CFF04554_RS00290 PF01479 S4 domain CFF04554_RS00295 PF01000 RNA polymerase Rpb3/RpoA insert domain CFF04554_RS00295 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CFF04554_RS00295 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CFF04554_RS00300 PF01196 Ribosomal protein L17 CFF04554_RS00305 PF01106 NifU-like domain CFF04554_RS00315 PF02875 Mur ligase family, glutamate ligase domain CFF04554_RS00315 PF08245 Mur ligase middle domain CFF04554_RS00320 PF02261 Aspartate decarboxylase CFF04554_RS00325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS00325 PF12729 CFF04554_RS00325 CFF04554_RS00330 PF02575 YbaB/EbfC DNA-binding family CFF04554_RS00335 PF13180 PDZ domain CFF04554_RS00340 PF00348 Polyprenyl synthetase CFF04554_RS00345 PF00456 Transketolase, thiamine diphosphate binding domain CFF04554_RS00345 PF02779 Transketolase, pyrimidine binding domain CFF04554_RS00345 PF02780 Transketolase, C-terminal domain CFF04554_RS00350 PF00171 Aldehyde dehydrogenase family CFF04554_RS00355 PF04328 CFF04554_RS00355 CFF04554_RS00360 PF02554 CFF04554_RS00360 CFF04554_RS00360 PF13722 CFF04554_RS00360 CFF04554_RS00365 PF02597 ThiS family CFF04554_RS00370 PF00899 ThiF family CFF04554_RS00370 PF14453 CFF04554_RS00370 CFF04554_RS00375 PF05690 Thiazole biosynthesis protein ThiG CFF04554_RS00380 PF04055 Radical SAM superfamily CFF04554_RS00380 PF06968 Biotin and Thiamin Synthesis associated domain CFF04554_RS00385 PF01205 Uncharacterized protein family UPF0029 CFF04554_RS00390 PF00483 Nucleotidyl transferase CFF04554_RS00395 PF00342 Phosphoglucose isomerase CFF04554_RS00400 PF00210 Ferritin-like domain CFF04554_RS00405 PF04264 YceI-like domain CFF04554_RS00415 PF13500 AAA domain CFF04554_RS00425 PF04301 CFF04554_RS00425 CFF04554_RS00430 PF00155 Aminotransferase class I and II CFF04554_RS00440 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS00445 PF01142 tRNA pseudouridine synthase D (TruD) CFF04554_RS00455 PF02561 Flagellar protein FliS CFF04554_RS00460 PF02465 CFF04554_RS00460 CFF04554_RS00460 PF07195 CFF04554_RS00460 CFF04554_RS00465 PF03646 FlaG protein CFF04554_RS00475 PF03602 Conserved hypothetical protein 95 CFF04554_RS00480 PF02119 CFF04554_RS00480 CFF04554_RS00485 PF10135 CFF04554_RS00485 CFF04554_RS00490 PF04316 Anti-sigma-28 factor, FlgM CFF04554_RS00495 PF05130 FlgN protein CFF04554_RS00500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS00505 PF09674 CFF04554_RS00505 CFF04554_RS00510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFF04554_RS00510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFF04554_RS00510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFF04554_RS00510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFF04554_RS00515 PF00483 Nucleotidyl transferase CFF04554_RS00515 PF01050 Mannose-6-phosphate isomerase CFF04554_RS00520 PF06508 Queuosine biosynthesis protein QueC CFF04554_RS00525 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFF04554_RS00530 PF02325 CFF04554_RS00530 CFF04554_RS00535 PF01464 Transglycosylase SLT domain CFF04554_RS00545 PF10087 CFF04554_RS00545 CFF04554_RS00555 PF00258 Flavodoxin CFF04554_RS00560 PF02664 S-Ribosylhomocysteinase (LuxS) CFF04554_RS00565 PF03167 Uracil DNA glycosylase superfamily CFF04554_RS00570 PF00453 Ribosomal protein L20 CFF04554_RS00575 PF01632 Ribosomal protein L35 CFF04554_RS00580 PF13343 Bacterial extracellular solute-binding protein CFF04554_RS00585 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS00590 PF02321 Outer membrane efflux protein CFF04554_RS00595 PF00873 AcrB/AcrD/AcrF family CFF04554_RS00600 PF16576 CFF04554_RS00600 CFF04554_RS00605 PF00440 Bacterial regulatory proteins, tetR family CFF04554_RS00610 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CFF04554_RS00610 PF12801 CFF04554_RS00610 CFF04554_RS00610 PF13746 4Fe-4S dicluster domain CFF04554_RS00615 PF01165 Ribosomal protein S21 CFF04554_RS00625 PF07450 CFF04554_RS00625 CFF04554_RS00630 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CFF04554_RS00635 PF12838 4Fe-4S dicluster domain CFF04554_RS00640 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CFF04554_RS00640 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CFF04554_RS00640 PF00374 Nickel-dependent hydrogenase CFF04554_RS00645 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CFF04554_RS00650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CFF04554_RS00655 PF00146 NADH dehydrogenase CFF04554_RS00660 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CFF04554_RS00660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFF04554_RS00665 PF00037 4Fe-4S binding domain CFF04554_RS00665 PF12798 4Fe-4S binding domain CFF04554_RS00665 PF13247 4Fe-4S dicluster domain CFF04554_RS00675 PF05538 CFF04554_RS00675 CFF04554_RS00685 PF14537 Cytochrome c3 CFF04554_RS00690 PF03264 NapC/NirT cytochrome c family, N-terminal region CFF04554_RS00700 PF00072 Response regulator receiver domain CFF04554_RS00700 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS00710 PF01967 MoaC family CFF04554_RS00715 PF04359 Protein of unknown function (DUF493) CFF04554_RS00725 PF04214 CFF04554_RS00725 CFF04554_RS00730 PF03605 CFF04554_RS00730 CFF04554_RS00735 PF05992 CFF04554_RS00735 CFF04554_RS00740 PF01435 Peptidase family M48 CFF04554_RS00745 PF02652 CFF04554_RS00745 CFF04554_RS00750 PF00571 CBS domain CFF04554_RS00750 PF01595 CFF04554_RS00750 CFF04554_RS00750 PF03471 Transporter associated domain CFF04554_RS00780 PF02635 DsrE/DsrF-like family CFF04554_RS00785 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CFF04554_RS00790 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CFF04554_RS00795 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CFF04554_RS00795 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CFF04554_RS00800 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin CFF04554_RS00805 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CFF04554_RS00805 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CFF04554_RS00810 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CFF04554_RS00810 PF13510 2Fe-2S iron-sulfur cluster binding domain CFF04554_RS00815 PF00146 NADH dehydrogenase CFF04554_RS00820 PF12838 4Fe-4S dicluster domain CFF04554_RS00825 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CFF04554_RS00830 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CFF04554_RS00835 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CFF04554_RS00835 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFF04554_RS00840 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CFF04554_RS00845 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CFF04554_RS00850 PF10670 CFF04554_RS00850 CFF04554_RS00855 PF01891 Cobalt uptake substrate-specific transmembrane region CFF04554_RS00865 PF02361 Cobalt transport protein CFF04554_RS00870 PF00005 ABC transporter CFF04554_RS00875 PF01131 DNA topoisomerase CFF04554_RS00875 PF01396 CFF04554_RS00875 CFF04554_RS00875 PF01751 Toprim domain CFF04554_RS00880 PF04055 Radical SAM superfamily CFF04554_RS00880 PF06968 Biotin and Thiamin Synthesis associated domain CFF04554_RS00885 PF00999 Sodium/hydrogen exchanger family CFF04554_RS00890 PF00285 Citrate synthase CFF04554_RS00895 PF00459 Inositol monophosphatase family CFF04554_RS00900 PF12849 PBP superfamily domain CFF04554_RS00905 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS00910 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS00915 PF00005 ABC transporter CFF04554_RS00920 PF07690 Major Facilitator Superfamily CFF04554_RS00925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS00930 PF04143 CFF04554_RS00930 CFF04554_RS00935 PF13673 Acetyltransferase (GNAT) domain CFF04554_RS00940 PF09924 Uncharacterized conserved protein (DUF2156) CFF04554_RS00945 PF00994 Probable molybdopterin binding domain CFF04554_RS00945 PF03453 MoeA N-terminal region (domain I and II) CFF04554_RS00960 PF02391 MoaE protein CFF04554_RS00965 PF02597 ThiS family CFF04554_RS00970 PF05670 CFF04554_RS00970 CFF04554_RS00970 PF05833 Fibronectin-binding protein A N-terminus (FbpA) CFF04554_RS00975 PF00330 Aconitase family (aconitate hydratase) CFF04554_RS00980 PF12804 MobA-like NTP transferase domain CFF04554_RS00985 PF02253 Phospholipase A1 CFF04554_RS00990 PF11741 AMIN domain CFF04554_RS01000 PF00113 Enolase, C-terminal TIM barrel domain CFF04554_RS01000 PF03952 Enolase, N-terminal domain CFF04554_RS01005 PF00154 recA bacterial DNA recombination protein CFF04554_RS01010 PF02621 Menaquinone biosynthesis CFF04554_RS01015 PF01313 CFF04554_RS01015 CFF04554_RS01020 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CFF04554_RS01040 PF01148 Cytidylyltransferase family CFF04554_RS01045 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CFF04554_RS01045 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal CFF04554_RS01045 PF13288 DXP reductoisomerase C-terminal domain CFF04554_RS01050 PF03352 Methyladenine glycosylase CFF04554_RS01055 PF00860 Permease family CFF04554_RS01060 PF02557 D-alanyl-D-alanine carboxypeptidase CFF04554_RS01065 PF17033 CFF04554_RS01065 CFF04554_RS01065 PF17129 CFF04554_RS01065 CFF04554_RS01070 PF00814 Glycoprotease family CFF04554_RS01075 PF09976 Tetratricopeptide repeat CFF04554_RS01075 PF13181 Tetratricopeptide repeat CFF04554_RS01080 PF01715 IPP transferase CFF04554_RS01085 PF01040 UbiA prenyltransferase family CFF04554_RS01100 PF04055 Radical SAM superfamily CFF04554_RS01100 PF06463 Molybdenum Cofactor Synthesis C CFF04554_RS01100 PF13353 4Fe-4S single cluster domain CFF04554_RS01105 PF13353 4Fe-4S single cluster domain CFF04554_RS01110 PF00465 Iron-containing alcohol dehydrogenase CFF04554_RS01115 PF01242 6-pyruvoyl tetrahydropterin synthase CFF04554_RS01130 PF04452 RNA methyltransferase CFF04554_RS01140 PF00476 DNA polymerase family A CFF04554_RS01140 PF01367 5'-3' exonuclease, C-terminal SAM fold CFF04554_RS01140 PF01612 3'-5' exonuclease CFF04554_RS01140 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CFF04554_RS01145 PF01618 CFF04554_RS01145 CFF04554_RS01150 PF00691 OmpA family CFF04554_RS01150 PF13677 CFF04554_RS01150 CFF04554_RS01155 PF12838 4Fe-4S dicluster domain CFF04554_RS01160 PF00334 Nucleoside diphosphate kinase CFF04554_RS01170 PF01783 Ribosomal L32p protein family CFF04554_RS01175 PF02504 Fatty acid synthesis protein CFF04554_RS01180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CFF04554_RS01180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CFF04554_RS01190 PF01935 Domain of unknown function DUF87 CFF04554_RS01190 PF05872 CFF04554_RS01190 CFF04554_RS01195 PF02660 CFF04554_RS01195 CFF04554_RS01200 PF02152 Dihydroneopterin aldolase CFF04554_RS01205 PF00072 Response regulator receiver domain CFF04554_RS01205 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS01210 PF00512 His Kinase A (phospho-acceptor) domain CFF04554_RS01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS01215 PF00037 4Fe-4S binding domain CFF04554_RS01220 PF02541 Ppx/GppA phosphatase family CFF04554_RS01225 PF13114 CFF04554_RS01225 CFF04554_RS01230 PF01207 Dihydrouridine synthase (Dus) CFF04554_RS01240 PF01258 Prokaryotic dksA/traR C4-type zinc finger CFF04554_RS01245 PF02590 Predicted SPOUT methyltransferase CFF04554_RS01250 PF01039 Carboxyl transferase domain CFF04554_RS01255 PF00578 AhpC/TSA family CFF04554_RS01255 PF10417 C-terminal domain of 1-Cys peroxiredoxin CFF04554_RS01265 PF00266 Aminotransferase class-V CFF04554_RS01270 PF02601 CFF04554_RS01270 CFF04554_RS01270 PF13742 CFF04554_RS01270 CFF04554_RS01275 PF01209 ubiE/COQ5 methyltransferase family CFF04554_RS01285 PF07158 CFF04554_RS01285 CFF04554_RS01290 PF13437 HlyD family secretion protein CFF04554_RS01295 PF00005 ABC transporter CFF04554_RS01300 PF12698 ABC-2 family transporter protein CFF04554_RS01305 PF12698 ABC-2 family transporter protein CFF04554_RS01310 PF01475 Ferric uptake regulator family CFF04554_RS01315 PF02779 Transketolase, pyrimidine binding domain CFF04554_RS01315 PF02780 Transketolase, C-terminal domain CFF04554_RS01315 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CFF04554_RS01320 PF02108 CFF04554_RS01320 CFF04554_RS01325 PF01706 FliG C-terminal domain CFF04554_RS01325 PF14841 FliG middle domain CFF04554_RS01325 PF14842 FliG N-terminal domain CFF04554_RS01330 PF01514 Secretory protein of YscJ/FliF family CFF04554_RS01330 PF08345 CFF04554_RS01330 CFF04554_RS01335 PF00155 Aminotransferase class I and II CFF04554_RS01340 PF00800 Prephenate dehydratase CFF04554_RS01340 PF01817 Chorismate mutase type II CFF04554_RS01345 PF13242 HAD-hyrolase-like CFF04554_RS01345 PF13344 Haloacid dehalogenase-like hydrolase CFF04554_RS01350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFF04554_RS01350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFF04554_RS01355 PF03739 CFF04554_RS01355 CFF04554_RS01360 PF09335 CFF04554_RS01360 CFF04554_RS01365 PF01725 Ham1 family CFF04554_RS01370 PF07715 TonB-dependent Receptor Plug Domain CFF04554_RS01375 PF00593 TonB dependent receptor CFF04554_RS01380 PF00296 Luciferase-like monooxygenase CFF04554_RS01390 PF01032 FecCD transport family CFF04554_RS01395 PF00005 ABC transporter CFF04554_RS01400 PF13847 Methyltransferase domain CFF04554_RS01405 PF01618 CFF04554_RS01405 CFF04554_RS01415 PF03544 Gram-negative bacterial TonB protein C-terminal CFF04554_RS01420 PF03435 Saccharopine dehydrogenase CFF04554_RS01420 PF16653 CFF04554_RS01420 CFF04554_RS01430 PF01197 Ribosomal protein L31 CFF04554_RS01435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFF04554_RS01440 PF00588 SpoU rRNA Methylase family CFF04554_RS01440 PF08032 RNA 2'-O ribose methyltransferase substrate binding CFF04554_RS01455 PF00155 Aminotransferase class I and II CFF04554_RS01460 PF00742 Homoserine dehydrogenase CFF04554_RS01460 PF01842 ACT domain CFF04554_RS01460 PF03447 Homoserine dehydrogenase, NAD binding domain CFF04554_RS01465 PF02021 Uncharacterised protein family UPF0102 CFF04554_RS01470 PF00085 Thioredoxin CFF04554_RS01475 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFF04554_RS01480 PF05818 CFF04554_RS01480 CFF04554_RS01485 PF01113 Dihydrodipicolinate reductase, N-terminus CFF04554_RS01485 PF05173 Dihydrodipicolinate reductase, C-terminus CFF04554_RS01490 PF00156 Phosphoribosyl transferase domain CFF04554_RS01490 PF13537 Glutamine amidotransferase domain CFF04554_RS01495 PF09624 CFF04554_RS01495 CFF04554_RS01500 PF09624 CFF04554_RS01500 CFF04554_RS01505 PF01502 Phosphoribosyl-AMP cyclohydrolase CFF04554_RS01505 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CFF04554_RS01510 PF01145 SPFH domain / Band 7 family CFF04554_RS01515 PF01063 Aminotransferase class IV CFF04554_RS01520 PF01381 Helix-turn-helix CFF04554_RS01545 PF01361 Tautomerase enzyme CFF04554_RS01550 PF00578 AhpC/TSA family CFF04554_RS01555 PF05359 CFF04554_RS01555 CFF04554_RS01560 PF02677 CFF04554_RS01560 CFF04554_RS01570 PF07977 FabA-like domain CFF04554_RS01575 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS01575 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CFF04554_RS01580 PF06689 ClpX C4-type zinc finger CFF04554_RS01580 PF07724 AAA domain (Cdc48 subfamily) CFF04554_RS01580 PF10431 C-terminal, D2-small domain, of ClpB protein CFF04554_RS01585 PF06723 MreB/Mbl protein CFF04554_RS01590 PF04085 rod shape-determining protein MreC CFF04554_RS01595 PF02142 MGS-like domain CFF04554_RS01595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFF04554_RS01595 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CFF04554_RS01600 PF04556 CFF04554_RS01600 CFF04554_RS01605 PF01555 DNA methylase CFF04554_RS01610 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CFF04554_RS01620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS01620 PF08447 PAS fold CFF04554_RS01620 PF13426 PAS domain CFF04554_RS01625 PF08378 CFF04554_RS01625 CFF04554_RS01630 PF00899 ThiF family CFF04554_RS01635 PF01975 Survival protein SurE CFF04554_RS01640 PF02684 CFF04554_RS01640 CFF04554_RS01645 PF01272 Transcription elongation factor, GreA/GreB, C-term CFF04554_RS01645 PF03449 Transcription elongation factor, N-terminal CFF04554_RS01650 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFF04554_RS01650 PF02774 Semialdehyde dehydrogenase, dimerisation domain CFF04554_RS01660 PF00072 Response regulator receiver domain CFF04554_RS01660 PF01584 CheW-like domain CFF04554_RS01665 PF00072 Response regulator receiver domain CFF04554_RS01665 PF01584 CheW-like domain CFF04554_RS01665 PF01627 Hpt domain CFF04554_RS01665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS01665 PF02895 Signal transducing histidine kinase, homodimeric domain CFF04554_RS01670 PF01584 CheW-like domain CFF04554_RS01675 PF00702 haloacid dehalogenase-like hydrolase CFF04554_RS01680 PF00923 Transaldolase CFF04554_RS01685 PF00437 Type II/IV secretion system protein CFF04554_RS01690 PF01386 Ribosomal L25p family CFF04554_RS01690 PF14693 Ribosomal protein TL5, C-terminal domain CFF04554_RS01695 PF01195 Peptidyl-tRNA hydrolase CFF04554_RS01700 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFF04554_RS01705 PF01206 Sulfurtransferase TusA CFF04554_RS01710 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS01710 PF02769 AIR synthase related protein, C-terminal domain CFF04554_RS01715 PF00881 Nitroreductase family CFF04554_RS01720 PF01312 FlhB HrpN YscU SpaS Family CFF04554_RS01725 PF06965 Na+/H+ antiporter 1 CFF04554_RS01735 PF00939 Sodium:sulfate symporter transmembrane region CFF04554_RS01740 PF01925 CFF04554_RS01740 CFF04554_RS01745 PF01925 CFF04554_RS01745 CFF04554_RS01750 PF03625 Domain of unknown function DUF302 CFF04554_RS01755 PF00425 chorismate binding enzyme CFF04554_RS01760 PF00117 Glutamine amidotransferase class-I CFF04554_RS01760 PF00591 Glycosyl transferase family, a/b domain CFF04554_RS01765 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CFF04554_RS01770 PF00291 Pyridoxal-phosphate dependent enzyme CFF04554_RS01775 PF00290 Tryptophan synthase alpha chain CFF04554_RS01785 PF01052 Surface presentation of antigens (SPOA) CFF04554_RS01800 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS01805 PF00005 ABC transporter CFF04554_RS01815 PF13531 Bacterial extracellular solute-binding protein CFF04554_RS01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFF04554_RS01820 PF03459 TOBE domain CFF04554_RS01825 PF04333 CFF04554_RS01825 CFF04554_RS01830 PF05494 Toluene tolerance, Ttg2 CFF04554_RS01835 PF03176 MMPL family CFF04554_RS01840 PF04972 BON domain CFF04554_RS01845 PF00563 EAL domain CFF04554_RS01845 PF00990 GGDEF domain CFF04554_RS01845 PF08447 PAS fold CFF04554_RS01845 PF13426 PAS domain CFF04554_RS01850 PF13393 Histidyl-tRNA synthetase CFF04554_RS01855 PF00709 Adenylosuccinate synthetase CFF04554_RS01860 PF02050 Flagellar FliJ protein CFF04554_RS01865 PF03448 MgtE intracellular N domain CFF04554_RS01870 PF04368 CFF04554_RS01870 CFF04554_RS01875 PF00117 Glutamine amidotransferase class-I CFF04554_RS01875 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CFF04554_RS01880 PF13386 CFF04554_RS01880 CFF04554_RS01885 PF00989 PAS fold CFF04554_RS01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS01890 PF00072 Response regulator receiver domain CFF04554_RS01890 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS01895 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFF04554_RS01900 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO CFF04554_RS01905 PF05545 CFF04554_RS01905 CFF04554_RS01910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFF04554_RS01910 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CFF04554_RS01915 PF13179 CFF04554_RS01915 CFF04554_RS01925 PF05751 CFF04554_RS01925 CFF04554_RS01930 PF12705 PD-(D/E)XK nuclease superfamily CFF04554_RS01935 PF00580 UvrD/REP helicase N-terminal domain CFF04554_RS01935 PF13361 UvrD-like helicase C-terminal domain CFF04554_RS01940 PF00572 Ribosomal protein L13 CFF04554_RS01945 PF00380 Ribosomal protein S9/S16 CFF04554_RS01950 PF00691 OmpA family CFF04554_RS01950 PF13505 Outer membrane protein beta-barrel domain CFF04554_RS01955 PF00924 Mechanosensitive ion channel CFF04554_RS01960 PF13419 Haloacid dehalogenase-like hydrolase CFF04554_RS01965 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CFF04554_RS01965 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CFF04554_RS01965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFF04554_RS01965 PF10371 Domain of unknown function CFF04554_RS01965 PF12838 4Fe-4S dicluster domain CFF04554_RS01965 PF17147 CFF04554_RS01965 CFF04554_RS01985 PF05538 CFF04554_RS01985 CFF04554_RS01990 PF05538 CFF04554_RS01990 CFF04554_RS01995 PF00034 Cytochrome c CFF04554_RS02000 PF13458 Periplasmic binding protein CFF04554_RS02005 PF02653 CFF04554_RS02005 CFF04554_RS02010 PF02653 CFF04554_RS02010 CFF04554_RS02015 PF00005 ABC transporter CFF04554_RS02015 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFF04554_RS02020 PF00005 ABC transporter CFF04554_RS02025 PF01578 CFF04554_RS02025 CFF04554_RS02025 PF05140 CFF04554_RS02025 CFF04554_RS02035 PF04608 Phosphatidylglycerophosphatase A CFF04554_RS02040 PF01747 ATP-sulfurylase CFF04554_RS02045 PF00072 Response regulator receiver domain CFF04554_RS02050 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CFF04554_RS02050 PF02542 YgbB family CFF04554_RS02055 PF01964 ThiC family CFF04554_RS02060 PF10609 ParA/MinD ATPase like CFF04554_RS02065 PF14602 Hexapeptide repeat of succinyl-transferase CFF04554_RS02065 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CFF04554_RS02065 PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal CFF04554_RS02070 PF00005 ABC transporter CFF04554_RS02070 PF12848 ABC transporter CFF04554_RS02075 PF13085 2Fe-2S iron-sulfur cluster binding domain CFF04554_RS02075 PF13183 4Fe-4S dicluster domain CFF04554_RS02080 PF00890 FAD binding domain CFF04554_RS02080 PF02910 Fumarate reductase flavoprotein C-term CFF04554_RS02085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CFF04554_RS02090 PF01790 CFF04554_RS02090 CFF04554_RS02100 PF00817 impB/mucB/samB family CFF04554_RS02105 PF00122 E1-E2 ATPase CFF04554_RS02105 PF00403 Heavy-metal-associated domain CFF04554_RS02105 PF00702 haloacid dehalogenase-like hydrolase CFF04554_RS02115 PF13508 Acetyltransferase (GNAT) domain CFF04554_RS02120 PF03222 Tryptophan/tyrosine permease family CFF04554_RS02125 PF01709 Transcriptional regulator CFF04554_RS02130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CFF04554_RS02135 PF00375 Sodium:dicarboxylate symporter family CFF04554_RS02140 PF00027 Cyclic nucleotide-binding domain CFF04554_RS02140 PF13545 Crp-like helix-turn-helix domain CFF04554_RS02145 PF00384 Molybdopterin oxidoreductase CFF04554_RS02145 PF01568 Molydopterin dinucleotide binding domain CFF04554_RS02155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS02155 PF02743 Cache domain CFF04554_RS02160 PF00072 Response regulator receiver domain CFF04554_RS02160 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS02165 PF01323 DSBA-like thioredoxin domain CFF04554_RS02170 PF02600 Disulfide bond formation protein DsbB CFF04554_RS02180 PF05935 Arylsulfotransferase (ASST) CFF04554_RS02185 PF00350 Dynamin family CFF04554_RS02190 PF00350 Dynamin family CFF04554_RS02200 PF00034 Cytochrome c CFF04554_RS02200 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CFF04554_RS02210 PF05048 Periplasmic copper-binding protein (NosD) CFF04554_RS02215 PF12838 4Fe-4S dicluster domain CFF04554_RS02230 PF12801 CFF04554_RS02230 CFF04554_RS02230 PF13237 4Fe-4S dicluster domain CFF04554_RS02235 PF00005 ABC transporter CFF04554_RS02240 PF12679 CFF04554_RS02240 CFF04554_RS02245 PF05573 NosL CFF04554_RS02255 PF00512 His Kinase A (phospho-acceptor) domain CFF04554_RS02255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS02260 PF00072 Response regulator receiver domain CFF04554_RS02260 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS02265 PF01292 Prokaryotic cytochrome b561 CFF04554_RS02265 PF09626 Dihaem cytochrome c CFF04554_RS02270 PF09626 Dihaem cytochrome c CFF04554_RS02275 PF09086 Domain of unknown function (DUF1924) CFF04554_RS02285 PF06250 CFF04554_RS02285 CFF04554_RS02295 PF02321 Outer membrane efflux protein CFF04554_RS02300 PF13437 HlyD family secretion protein CFF04554_RS02300 PF13533 Biotin-lipoyl like CFF04554_RS02305 PF00005 ABC transporter CFF04554_RS02305 PF00664 ABC transporter transmembrane region CFF04554_RS02310 PF07277 CFF04554_RS02310 CFF04554_RS02320 PF07804 HipA-like C-terminal domain CFF04554_RS02320 PF07805 HipA-like N-terminal domain CFF04554_RS02320 PF13657 HipA N-terminal domain CFF04554_RS02330 PF02130 Uncharacterized protein family UPF0054 CFF04554_RS02340 PF02470 CFF04554_RS02340 CFF04554_RS02345 PF00005 ABC transporter CFF04554_RS02350 PF02405 CFF04554_RS02350 CFF04554_RS02355 PF01594 CFF04554_RS02355 CFF04554_RS02360 PF05491 Holliday junction DNA helicase ruvB C-terminus CFF04554_RS02360 PF05496 Holliday junction DNA helicase ruvB N-terminus CFF04554_RS02365 PF00581 Rhodanese-like domain CFF04554_RS02370 PF02548 Ketopantoate hydroxymethyltransferase CFF04554_RS02395 PF01402 Ribbon-helix-helix protein, copG family CFF04554_RS02400 PF05016 Plasmid stabilisation system protein CFF04554_RS02415 PF13173 AAA domain CFF04554_RS02415 PF13635 CFF04554_RS02415 CFF04554_RS02425 PF16363 CFF04554_RS02425 CFF04554_RS02430 PF00534 Glycosyl transferases group 1 CFF04554_RS02430 PF13847 Methyltransferase domain CFF04554_RS02435 PF00005 ABC transporter CFF04554_RS02435 PF14524 Wzt C-terminal domain CFF04554_RS02440 PF01061 CFF04554_RS02440 CFF04554_RS02445 PF00534 Glycosyl transferases group 1 CFF04554_RS02445 PF13439 Glycosyltransferase Family 4 CFF04554_RS02450 PF02397 CFF04554_RS02450 CFF04554_RS02455 PF13481 AAA domain CFF04554_RS02455 PF13541 Subunit ChlI of Mg-chelatase CFF04554_RS02460 PF00448 SRP54-type protein, GTPase domain CFF04554_RS02465 PF08534 Redoxin CFF04554_RS02470 PF01812 5-formyltetrahydrofolate cyclo-ligase family CFF04554_RS02475 PF01966 HD domain CFF04554_RS02475 PF12072 CFF04554_RS02475 CFF04554_RS02480 PF04366 CFF04554_RS02480 CFF04554_RS02485 PF09335 CFF04554_RS02485 CFF04554_RS02490 PF06097 CFF04554_RS02490 CFF04554_RS02515 PF12836 Helix-hairpin-helix motif CFF04554_RS02520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS02520 PF13682 Chemoreceptor zinc-binding domain CFF04554_RS02525 PF00202 Aminotransferase class-III CFF04554_RS02530 PF00730 HhH-GPD superfamily base excision DNA repair protein CFF04554_RS02530 PF10576 Iron-sulfur binding domain of endonuclease III CFF04554_RS02535 PF00639 PPIC-type PPIASE domain CFF04554_RS02540 PF01116 Fructose-bisphosphate aldolase class-II CFF04554_RS02545 PF01618 CFF04554_RS02545 CFF04554_RS02550 PF00691 OmpA family CFF04554_RS02560 PF00815 Histidinol dehydrogenase CFF04554_RS02565 PF00669 Bacterial flagellin N-terminal helical region CFF04554_RS02565 PF00700 Bacterial flagellin C-terminal helical region CFF04554_RS02575 PF00140 Sigma-70 factor, region 1 CFF04554_RS02575 PF04539 Sigma-70 region 3 CFF04554_RS02575 PF04542 Sigma-70 region 2 CFF04554_RS02575 PF04545 Sigma-70, region 4 CFF04554_RS02580 PF00460 Flagella basal body rod protein CFF04554_RS02580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS02585 PF00460 Flagella basal body rod protein CFF04554_RS02585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS02590 PF03239 CFF04554_RS02590 CFF04554_RS02595 PF10634 Fe2+ transport protein CFF04554_RS02600 PF04945 YHS domain CFF04554_RS02600 PF10080 CFF04554_RS02600 CFF04554_RS02605 PF02687 CFF04554_RS02605 CFF04554_RS02605 PF12704 MacB-like periplasmic core domain CFF04554_RS02610 PF02687 CFF04554_RS02610 CFF04554_RS02610 PF12704 MacB-like periplasmic core domain CFF04554_RS02615 PF00005 ABC transporter CFF04554_RS02620 PF08534 Redoxin CFF04554_RS02625 PF04371 Porphyromonas-type peptidyl-arginine deiminase CFF04554_RS02630 PF01545 Cation efflux family CFF04554_RS02630 PF16916 CFF04554_RS02630 CFF04554_RS02635 PF00795 Carbon-nitrogen hydrolase CFF04554_RS02640 PF03616 CFF04554_RS02640 CFF04554_RS02645 PF01863 Protein of unknown function DUF45 CFF04554_RS02660 PF00072 Response regulator receiver domain CFF04554_RS02660 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS02665 PF07690 Major Facilitator Superfamily CFF04554_RS02670 PF00005 ABC transporter CFF04554_RS02670 PF12848 ABC transporter CFF04554_RS02670 PF16326 CFF04554_RS02670 CFF04554_RS02675 PF00209 Sodium:neurotransmitter symporter family CFF04554_RS02680 PF01435 Peptidase family M48 CFF04554_RS02680 PF16491 CFF04554_RS02680 CFF04554_RS02685 PF05175 Methyltransferase small domain CFF04554_RS02690 PF13664 CFF04554_RS02690 CFF04554_RS02700 PF03061 Thioesterase superfamily CFF04554_RS02710 PF03167 Uracil DNA glycosylase superfamily CFF04554_RS02715 PF00583 Acetyltransferase (GNAT) family CFF04554_RS02720 PF00909 Ammonium Transporter Family CFF04554_RS02725 PF00543 Nitrogen regulatory protein P-II CFF04554_RS02730 PF00468 Ribosomal protein L34 CFF04554_RS02735 PF00825 Ribonuclease P CFF04554_RS02740 PF01809 CFF04554_RS02740 CFF04554_RS02745 PF02096 60Kd inner membrane protein CFF04554_RS02745 PF14849 YidC periplasmic domain CFF04554_RS02750 PF14804 Jag N-terminus CFF04554_RS02755 PF01926 50S ribosome-binding GTPase CFF04554_RS02755 PF10396 GTP-binding protein TrmE N-terminus CFF04554_RS02755 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE CFF04554_RS02760 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS02760 PF02769 AIR synthase related protein, C-terminal domain CFF04554_RS02765 PF00226 DnaJ domain CFF04554_RS02765 PF05099 Tellurite resistance protein TerB CFF04554_RS02770 PF01808 AICARFT/IMPCHase bienzyme CFF04554_RS02770 PF02142 MGS-like domain CFF04554_RS02785 PF01883 Domain of unknown function DUF59 CFF04554_RS02790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS02795 PF01063 Aminotransferase class IV CFF04554_RS02805 PF13515 CFF04554_RS02805 CFF04554_RS02815 PF01795 MraW methylase family CFF04554_RS02820 PF00596 Class II Aldolase and Adducin N-terminal domain CFF04554_RS02825 PF13145 PPIC-type PPIASE domain CFF04554_RS02825 PF13624 SurA N-terminal domain CFF04554_RS02830 PF02491 SHS2 domain inserted in FTSA CFF04554_RS02830 PF14450 Cell division protein FtsA CFF04554_RS02835 PF00091 Tubulin/FtsZ family, GTPase domain CFF04554_RS02835 PF12327 FtsZ family, C-terminal domain CFF04554_RS02840 PF00877 NlpC/P60 family CFF04554_RS02840 PF12912 NLPC_P60 stabilising domain, N term CFF04554_RS02840 PF12913 SH3 domain of the SH3b1 type CFF04554_RS02840 PF12914 SH3 domain of SH3b2 type CFF04554_RS02840 PF13539 D-alanyl-D-alanine carboxypeptidase CFF04554_RS02845 PF02689 CFF04554_RS02845 CFF04554_RS02845 PF05970 CFF04554_RS02845 CFF04554_RS02855 PF03548 Outer membrane lipoprotein carrier protein LolA CFF04554_RS02860 PF00271 Helicase conserved C-terminal domain CFF04554_RS02860 PF01043 SecA preprotein cross-linking domain CFF04554_RS02860 PF02810 SEC-C motif CFF04554_RS02860 PF07516 SecA Wing and Scaffold domain CFF04554_RS02860 PF07517 SecA DEAD-like domain CFF04554_RS02865 PF02687 CFF04554_RS02865 CFF04554_RS02875 PF13231 CFF04554_RS02875 CFF04554_RS02880 PF07690 Major Facilitator Superfamily CFF04554_RS02885 PF00156 Phosphoribosyl transferase domain CFF04554_RS02890 PF00860 Permease family CFF04554_RS02895 PF04055 Radical SAM superfamily CFF04554_RS02900 PF01909 Nucleotidyltransferase domain CFF04554_RS02900 PF01966 HD domain CFF04554_RS02905 PF01380 SIS domain CFF04554_RS02905 PF13522 Glutamine amidotransferase domain CFF04554_RS02910 PF04143 CFF04554_RS02910 CFF04554_RS02915 PF01206 Sulfurtransferase TusA CFF04554_RS02920 PF01177 Asp/Glu/Hydantoin racemase CFF04554_RS02925 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CFF04554_RS02950 PF12836 Helix-hairpin-helix motif CFF04554_RS03000 PF00990 GGDEF domain CFF04554_RS03000 PF01814 Hemerythrin HHE cation binding domain CFF04554_RS03010 PF02464 Competence-damaged protein CFF04554_RS03020 PF00133 tRNA synthetases class I (I, L, M and V) CFF04554_RS03020 PF08264 Anticodon-binding domain of tRNA CFF04554_RS03025 PF01425 Amidase CFF04554_RS03030 PF00478 IMP dehydrogenase / GMP reductase domain CFF04554_RS03030 PF00571 CBS domain CFF04554_RS03035 PF00561 alpha/beta hydrolase fold CFF04554_RS03040 PF02609 Exonuclease VII small subunit CFF04554_RS03045 PF00795 Carbon-nitrogen hydrolase CFF04554_RS03050 PF01225 Mur ligase family, catalytic domain CFF04554_RS03050 PF02875 Mur ligase family, glutamate ligase domain CFF04554_RS03050 PF08245 Mur ligase middle domain CFF04554_RS03060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFF04554_RS03065 PF00005 ABC transporter CFF04554_RS03070 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS03075 PF13379 NMT1-like family CFF04554_RS03085 PF02566 OsmC-like protein CFF04554_RS03090 PF00488 MutS domain V CFF04554_RS03090 PF01713 Smr domain CFF04554_RS03095 PF00563 EAL domain CFF04554_RS03095 PF00990 GGDEF domain CFF04554_RS03100 PF01810 CFF04554_RS03100 CFF04554_RS03105 PF01546 Peptidase family M20/M25/M40 CFF04554_RS03105 PF07687 Peptidase dimerisation domain CFF04554_RS03110 PF06039 CFF04554_RS03110 CFF04554_RS03115 PF08241 Methyltransferase domain CFF04554_RS03120 PF00224 Pyruvate kinase, barrel domain CFF04554_RS03120 PF02887 Pyruvate kinase, alpha/beta domain CFF04554_RS03125 PF00675 Insulinase (Peptidase family M16) CFF04554_RS03125 PF05193 Peptidase M16 inactive domain CFF04554_RS03130 PF00271 Helicase conserved C-terminal domain CFF04554_RS03130 PF04851 Type III restriction enzyme, res subunit CFF04554_RS03135 PF01474 Class-II DAHP synthetase family CFF04554_RS03140 PF00171 Aldehyde dehydrogenase family CFF04554_RS03145 PF13738 Pyridine nucleotide-disulphide oxidoreductase CFF04554_RS03155 PF05175 Methyltransferase small domain CFF04554_RS03160 PF03692 CFF04554_RS03160 CFF04554_RS03170 PF00218 Indole-3-glycerol phosphate synthase CFF04554_RS03175 PF01230 HIT domain CFF04554_RS03180 PF03883 CFF04554_RS03180 CFF04554_RS03210 PF02661 Fic/DOC family CFF04554_RS03215 PF02661 Fic/DOC family CFF04554_RS03225 PF10881 CFF04554_RS03225 CFF04554_RS03250 PF02661 Fic/DOC family CFF04554_RS03275 PF08843 Nucleotidyl transferase of unknown function (DUF1814) CFF04554_RS03285 PF02661 Fic/DOC family CFF04554_RS03290 PF00271 Helicase conserved C-terminal domain CFF04554_RS03345 PF08291 Peptidase M15 CFF04554_RS03360 PF02371 CFF04554_RS03360 CFF04554_RS03370 PF01548 CFF04554_RS03370 CFF04554_RS03390 PF09669 CFF04554_RS03390 CFF04554_RS03400 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CFF04554_RS03400 PF02785 Biotin carboxylase C-terminal domain CFF04554_RS03400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFF04554_RS03410 PF04376 CFF04554_RS03410 CFF04554_RS03410 PF04377 CFF04554_RS03410 CFF04554_RS03415 PF00226 DnaJ domain CFF04554_RS03420 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CFF04554_RS03425 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CFF04554_RS03430 PF01384 CFF04554_RS03430 CFF04554_RS03435 PF00669 Bacterial flagellin N-terminal helical region CFF04554_RS03435 PF00700 Bacterial flagellin C-terminal helical region CFF04554_RS03440 PF01580 FtsK/SpoIIIE family CFF04554_RS03440 PF09397 Ftsk gamma domain CFF04554_RS03440 PF13491 CFF04554_RS03440 CFF04554_RS03445 PF09442 Domain of unknown function (DUF2018) CFF04554_RS03455 PF00348 Polyprenyl synthetase CFF04554_RS03460 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CFF04554_RS03460 PF01488 Shikimate / quinate 5-dehydrogenase CFF04554_RS03460 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CFF04554_RS03465 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFF04554_RS03465 PF03129 Anticodon binding domain CFF04554_RS03465 PF04073 Aminoacyl-tRNA editing domain CFF04554_RS03470 PF04186 CFF04554_RS03470 CFF04554_RS03475 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CFF04554_RS03475 PF03900 Porphobilinogen deaminase, C-terminal domain CFF04554_RS03480 PF03631 CFF04554_RS03480 CFF04554_RS03485 PF01565 FAD binding domain CFF04554_RS03485 PF02913 FAD linked oxidases, C-terminal domain CFF04554_RS03490 PF15436 CFF04554_RS03490 CFF04554_RS03495 PF01551 Peptidase family M23 CFF04554_RS03500 PF00571 CBS domain CFF04554_RS03500 PF01769 Divalent cation transporter CFF04554_RS03500 PF03448 MgtE intracellular N domain CFF04554_RS03515 PF00166 Chaperonin 10 Kd subunit CFF04554_RS03520 PF00118 TCP-1/cpn60 chaperonin family CFF04554_RS03525 PF00762 Ferrochelatase CFF04554_RS03530 PF00905 Penicillin binding protein transpeptidase domain CFF04554_RS03530 PF03717 Penicillin-binding Protein dimerisation domain CFF04554_RS03535 PF02049 CFF04554_RS03535 CFF04554_RS03540 PF00460 Flagella basal body rod protein CFF04554_RS03540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS03550 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CFF04554_RS03560 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS03560 PF02861 Clp amino terminal domain CFF04554_RS03560 PF07724 AAA domain (Cdc48 subfamily) CFF04554_RS03560 PF10431 C-terminal, D2-small domain, of ClpB protein CFF04554_RS03565 PF02617 ATP-dependent Clp protease adaptor protein ClpS CFF04554_RS03575 PF01668 SmpB protein CFF04554_RS03580 PF00288 GHMP kinases N terminal domain CFF04554_RS03585 PF02599 Global regulator protein family CFF04554_RS03590 PF01509 TruB family pseudouridylate synthase (N terminal domain) CFF04554_RS03595 PF00580 UvrD/REP helicase N-terminal domain CFF04554_RS03595 PF13361 UvrD-like helicase C-terminal domain CFF04554_RS03600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFF04554_RS03610 PF01432 Peptidase family M3 CFF04554_RS03610 PF08439 Oligopeptidase F CFF04554_RS03615 PF00375 Sodium:dicarboxylate symporter family CFF04554_RS03620 PF00438 S-adenosylmethionine synthetase, N-terminal domain CFF04554_RS03620 PF02772 S-adenosylmethionine synthetase, central domain CFF04554_RS03620 PF02773 S-adenosylmethionine synthetase, C-terminal domain CFF04554_RS03625 PF01297 Periplasmic solute binding protein family CFF04554_RS03630 PF00005 ABC transporter CFF04554_RS03635 PF00950 CFF04554_RS03635 CFF04554_RS03640 PF00950 CFF04554_RS03640 CFF04554_RS03645 PF00795 Carbon-nitrogen hydrolase CFF04554_RS03650 PF02699 Preprotein translocase subunit CFF04554_RS03655 PF02355 Protein export membrane protein CFF04554_RS03660 PF02355 Protein export membrane protein CFF04554_RS03660 PF07549 SecD/SecF GG Motif CFF04554_RS03670 PF00133 tRNA synthetases class I (I, L, M and V) CFF04554_RS03670 PF09334 tRNA synthetases class I (M) CFF04554_RS03670 PF13603 Leucyl-tRNA synthetase, Domain 2 CFF04554_RS03675 PF04390 Lipopolysaccharide-assembly CFF04554_RS03680 PF00990 GGDEF domain CFF04554_RS03685 PF08245 Mur ligase middle domain CFF04554_RS03690 PF01551 Peptidase family M23 CFF04554_RS03695 PF04519 CFF04554_RS03695 CFF04554_RS03700 PF00270 DEAD/DEAH box helicase CFF04554_RS03700 PF00271 Helicase conserved C-terminal domain CFF04554_RS03700 PF02559 CarD-like/TRCF domain CFF04554_RS03700 PF03461 TRCF domain CFF04554_RS03705 PF12118 CFF04554_RS03705 CFF04554_RS03710 PF05673 Protein of unknown function (DUF815) CFF04554_RS03715 PF00730 HhH-GPD superfamily base excision DNA repair protein CFF04554_RS03720 PF04076 Bacterial OB fold (BOF) protein CFF04554_RS03725 PF13380 CoA binding domain CFF04554_RS03730 PF00291 Pyridoxal-phosphate dependent enzyme CFF04554_RS03745 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CFF04554_RS03745 PF08479 POTRA domain, ShlB-type CFF04554_RS03750 PF01416 tRNA pseudouridine synthase CFF04554_RS03755 PF03739 CFF04554_RS03755 CFF04554_RS03760 PF01478 Type IV leader peptidase family CFF04554_RS03760 PF06750 CFF04554_RS03760 CFF04554_RS03765 PF01255 Putative undecaprenyl diphosphate synthase CFF04554_RS03775 PF02441 Flavoprotein CFF04554_RS03775 PF04127 DNA / pantothenate metabolism flavoprotein CFF04554_RS03780 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS03780 PF12804 MobA-like NTP transferase domain CFF04554_RS03785 PF00813 CFF04554_RS03785 CFF04554_RS03795 PF03547 CFF04554_RS03795 CFF04554_RS03800 PF02445 Quinolinate synthetase A protein CFF04554_RS03805 PF16576 CFF04554_RS03805 CFF04554_RS03810 PF00005 ABC transporter CFF04554_RS03810 PF02687 CFF04554_RS03810 CFF04554_RS03810 PF12704 MacB-like periplasmic core domain CFF04554_RS03815 PF02321 Outer membrane efflux protein CFF04554_RS03820 PF03772 CFF04554_RS03820 CFF04554_RS03825 PF00672 HAMP domain CFF04554_RS03825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS03830 PF00072 Response regulator receiver domain CFF04554_RS03830 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS03835 PF13180 PDZ domain CFF04554_RS03835 PF13365 Trypsin-like peptidase domain CFF04554_RS03840 PF00226 DnaJ domain CFF04554_RS03840 PF01556 DnaJ C terminal domain CFF04554_RS03845 PF13411 MerR HTH family regulatory protein CFF04554_RS03850 PF00999 Sodium/hydrogen exchanger family CFF04554_RS03850 PF02254 TrkA-N domain CFF04554_RS03855 PF00999 Sodium/hydrogen exchanger family CFF04554_RS03855 PF02080 TrkA-C domain CFF04554_RS03860 PF04264 YceI-like domain CFF04554_RS03865 PF01925 CFF04554_RS03865 CFF04554_RS03870 PF00119 ATP synthase A chain CFF04554_RS03880 PF02581 Thiamine monophosphate synthase/TENI CFF04554_RS03885 PF02637 GatB domain CFF04554_RS03885 PF02934 GatB/GatE catalytic domain CFF04554_RS03890 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CFF04554_RS03890 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CFF04554_RS03895 PF00933 Glycosyl hydrolase family 3 N terminal domain CFF04554_RS03905 PF00892 EamA-like transporter family CFF04554_RS03910 PF00005 ABC transporter CFF04554_RS03915 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS03920 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFF04554_RS03925 PF01066 CDP-alcohol phosphatidyltransferase CFF04554_RS03930 PF13561 Enoyl-(Acyl carrier protein) reductase CFF04554_RS03935 PF00701 Dihydrodipicolinate synthetase family CFF04554_RS03940 PF00675 Insulinase (Peptidase family M16) CFF04554_RS03940 PF05193 Peptidase M16 inactive domain CFF04554_RS03945 PF01180 Dihydroorotate dehydrogenase CFF04554_RS03950 PF00005 ABC transporter CFF04554_RS03950 PF00664 ABC transporter transmembrane region CFF04554_RS03955 PF01406 tRNA synthetases class I (C) catalytic domain CFF04554_RS03955 PF09190 DALR domain CFF04554_RS03960 PF03023 CFF04554_RS03960 CFF04554_RS03980 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CFF04554_RS03985 PF00316 Fructose-1-6-bisphosphatase CFF04554_RS03995 PF00133 tRNA synthetases class I (I, L, M and V) CFF04554_RS03995 PF01588 Putative tRNA binding domain CFF04554_RS03995 PF09334 tRNA synthetases class I (M) CFF04554_RS04005 PF00027 Cyclic nucleotide-binding domain CFF04554_RS04005 PF13545 Crp-like helix-turn-helix domain CFF04554_RS04010 PF03264 NapC/NirT cytochrome c family, N-terminal region CFF04554_RS04015 PF13435 Cytochrome c554 and c-prime CFF04554_RS04015 PF13447 Seven times multi-haem cytochrome CxxCH CFF04554_RS04020 PF04055 Radical SAM superfamily CFF04554_RS04025 PF04170 NlpE N-terminal domain CFF04554_RS04030 PF07690 Major Facilitator Superfamily CFF04554_RS04035 PF01739 CheR methyltransferase, SAM binding domain CFF04554_RS04040 PF01339 CheB methylesterase CFF04554_RS04045 PF03961 CFF04554_RS04045 CFF04554_RS04050 PF01330 RuvA N terminal domain CFF04554_RS04050 PF07499 RuvA, C-terminal domain CFF04554_RS04050 PF14520 Helix-hairpin-helix domain CFF04554_RS04055 PF01820 D-ala D-ala ligase N-terminus CFF04554_RS04055 PF07478 D-ala D-ala ligase C-terminus CFF04554_RS04060 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CFF04554_RS04065 PF12697 Alpha/beta hydrolase family CFF04554_RS04070 PF08245 Mur ligase middle domain CFF04554_RS04075 PF00871 Acetokinase family CFF04554_RS04080 PF01515 Phosphate acetyl/butaryl transferase CFF04554_RS04085 PF02107 CFF04554_RS04085 CFF04554_RS04090 PF03713 Domain of unknown function (DUF305) CFF04554_RS04095 PF00205 Thiamine pyrophosphate enzyme, central domain CFF04554_RS04095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFF04554_RS04095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFF04554_RS04100 PF01842 ACT domain CFF04554_RS04100 PF10369 Small subunit of acetolactate synthase CFF04554_RS04105 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS04105 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CFF04554_RS04115 PF09335 CFF04554_RS04115 CFF04554_RS04120 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CFF04554_RS04120 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CFF04554_RS04125 PF00551 Formyl transferase CFF04554_RS04130 PF00588 SpoU rRNA Methylase family CFF04554_RS04135 PF03372 Endonuclease/Exonuclease/phosphatase family CFF04554_RS04145 PF02092 CFF04554_RS04145 CFF04554_RS04150 PF02086 D12 class N6 adenine-specific DNA methyltransferase CFF04554_RS04165 PF01235 CFF04554_RS04165 CFF04554_RS04170 PF00122 E1-E2 ATPase CFF04554_RS04170 PF00702 haloacid dehalogenase-like hydrolase CFF04554_RS04205 PF01551 Peptidase family M23 CFF04554_RS04215 PF00072 Response regulator receiver domain CFF04554_RS04215 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS04220 PF00512 His Kinase A (phospho-acceptor) domain CFF04554_RS04220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS04225 PF00764 Arginosuccinate synthase CFF04554_RS04230 PF00589 Phage integrase family CFF04554_RS04235 PF01098 CFF04554_RS04235 CFF04554_RS04240 PF03033 Glycosyltransferase family 28 N-terminal domain CFF04554_RS04240 PF04101 Glycosyltransferase family 28 C-terminal domain CFF04554_RS04245 PF00216 Bacterial DNA-binding protein CFF04554_RS04250 PF01618 CFF04554_RS04250 CFF04554_RS04255 PF02472 Biopolymer transport protein ExbD/TolR CFF04554_RS04260 PF03544 Gram-negative bacterial TonB protein C-terminal CFF04554_RS04265 PF01479 S4 domain CFF04554_RS04270 PF02367 Uncharacterised P-loop hydrolase UPF0079 CFF04554_RS04275 PF00005 ABC transporter CFF04554_RS04280 PF00309 CFF04554_RS04280 CFF04554_RS04280 PF04552 Sigma-54, DNA binding domain CFF04554_RS04280 PF04963 Sigma-54 factor, core binding domain CFF04554_RS04285 PF01761 3-dehydroquinate synthase CFF04554_RS04290 PF00924 Mechanosensitive ion channel CFF04554_RS04295 PF00919 Uncharacterized protein family UPF0004 CFF04554_RS04295 PF04055 Radical SAM superfamily CFF04554_RS04300 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS04305 PF00994 Probable molybdopterin binding domain CFF04554_RS04310 PF01168 Alanine racemase, N-terminal domain CFF04554_RS04315 PF02163 Peptidase family M50 CFF04554_RS04320 PF00834 Ribulose-phosphate 3 epimerase family CFF04554_RS04325 PF00929 Exonuclease CFF04554_RS04330 PF00270 DEAD/DEAH box helicase CFF04554_RS04330 PF00271 Helicase conserved C-terminal domain CFF04554_RS04335 PF07963 Prokaryotic N-terminal methylation motif CFF04554_RS04345 PF07963 Prokaryotic N-terminal methylation motif CFF04554_RS04365 PF00271 Helicase conserved C-terminal domain CFF04554_RS04365 PF02151 UvrB/uvrC motif CFF04554_RS04365 PF04851 Type III restriction enzyme, res subunit CFF04554_RS04365 PF12344 Ultra-violet resistance protein B CFF04554_RS04370 PF03929 CFF04554_RS04370 CFF04554_RS04375 PF00593 TonB dependent receptor CFF04554_RS04375 PF07715 TonB-dependent Receptor Plug Domain CFF04554_RS04380 PF01554 MatE CFF04554_RS04385 PF02503 Polyphosphate kinase middle domain CFF04554_RS04385 PF13089 Polyphosphate kinase N-terminal domain CFF04554_RS04385 PF13090 Polyphosphate kinase C-terminal domain CFF04554_RS04395 PF01717 Cobalamin-independent synthase, Catalytic domain CFF04554_RS04395 PF08267 Cobalamin-independent synthase, N-terminal domain CFF04554_RS04400 PF02219 Methylenetetrahydrofolate reductase CFF04554_RS04410 PF00300 Histidine phosphatase superfamily (branch 1) CFF04554_RS04415 PF04305 CFF04554_RS04415 CFF04554_RS04420 PF01694 Rhomboid family CFF04554_RS04425 PF02754 CFF04554_RS04425 CFF04554_RS04430 PF02589 Uncharacterised ACR, YkgG family COG1556 CFF04554_RS04430 PF11870 CFF04554_RS04430 CFF04554_RS04430 PF13183 4Fe-4S dicluster domain CFF04554_RS04435 PF02589 Uncharacterised ACR, YkgG family COG1556 CFF04554_RS04440 PF00877 NlpC/P60 family CFF04554_RS04445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFF04554_RS04450 PF00994 Probable molybdopterin binding domain CFF04554_RS04450 PF03453 MoeA N-terminal region (domain I and II) CFF04554_RS04465 PF01467 Cytidylyltransferase CFF04554_RS04470 PF02223 Thymidylate kinase CFF04554_RS04475 PF03129 Anticodon binding domain CFF04554_RS04475 PF13393 Histidyl-tRNA synthetase CFF04554_RS04480 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFF04554_RS04480 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFF04554_RS04485 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS04490 PF00155 Aminotransferase class I and II CFF04554_RS04495 PF00535 Glycosyl transferase family 2 CFF04554_RS04500 PF05787 Bacterial protein of unknown function (DUF839) CFF04554_RS04505 PF00258 Flavodoxin CFF04554_RS04510 PF03401 Tripartite tricarboxylate transporter family receptor CFF04554_RS04515 PF07331 CFF04554_RS04515 CFF04554_RS04520 PF01970 CFF04554_RS04520 CFF04554_RS04530 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CFF04554_RS04535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFF04554_RS04540 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CFF04554_RS04540 PF17147 CFF04554_RS04540 CFF04554_RS04545 PF12838 4Fe-4S dicluster domain CFF04554_RS04550 PF00549 CoA-ligase CFF04554_RS04550 PF02629 CoA binding domain CFF04554_RS04555 PF00549 CoA-ligase CFF04554_RS04555 PF08442 ATP-grasp domain CFF04554_RS04560 PF00056 lactate/malate dehydrogenase, NAD binding domain CFF04554_RS04560 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CFF04554_RS04565 PF03971 Monomeric isocitrate dehydrogenase CFF04554_RS04570 PF03595 Voltage-dependent anion channel CFF04554_RS04575 PF13419 Haloacid dehalogenase-like hydrolase CFF04554_RS04585 PF00171 Aldehyde dehydrogenase family CFF04554_RS04590 PF03063 Prismane/CO dehydrogenase family CFF04554_RS04595 PF01053 Cys/Met metabolism PLP-dependent enzyme CFF04554_RS04600 PF02082 Transcriptional regulator CFF04554_RS04605 PF00291 Pyridoxal-phosphate dependent enzyme CFF04554_RS04610 PF01648 4'-phosphopantetheinyl transferase superfamily CFF04554_RS04615 PF03748 CFF04554_RS04615 CFF04554_RS04620 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFF04554_RS04625 PF00202 Aminotransferase class-III CFF04554_RS04630 PF03458 CFF04554_RS04630 CFF04554_RS04635 PF02618 YceG-like family CFF04554_RS04640 PF13109 CFF04554_RS04640 CFF04554_RS04640 PF13116 CFF04554_RS04640 CFF04554_RS04645 PF01155 Hydrogenase expression/synthesis hypA family CFF04554_RS04650 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS04650 PF02769 AIR synthase related protein, C-terminal domain CFF04554_RS04655 PF01924 Hydrogenase formation hypA family CFF04554_RS04660 PF01455 HupF/HypC family CFF04554_RS04665 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFF04554_RS04670 PF01402 Ribbon-helix-helix protein, copG family CFF04554_RS04670 PF08753 NikR C terminal nickel binding domain CFF04554_RS04675 PF00708 Acylphosphatase CFF04554_RS04675 PF01300 Telomere recombination CFF04554_RS04675 PF07503 HypF finger CFF04554_RS04685 PF01750 Hydrogenase maturation protease CFF04554_RS04690 PF01292 Prokaryotic cytochrome b561 CFF04554_RS04695 PF00374 Nickel-dependent hydrogenase CFF04554_RS04700 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CFF04554_RS04700 PF10518 TAT (twin-arginine translocation) pathway signal sequence CFF04554_RS04700 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CFF04554_RS04705 PF05437 CFF04554_RS04705 CFF04554_RS04710 PF03591 CFF04554_RS04710 CFF04554_RS04715 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS04715 PF02861 Clp amino terminal domain CFF04554_RS04715 PF07724 AAA domain (Cdc48 subfamily) CFF04554_RS04715 PF10431 C-terminal, D2-small domain, of ClpB protein CFF04554_RS04720 PF03572 Peptidase family S41 CFF04554_RS04720 PF13180 PDZ domain CFF04554_RS04725 PF01259 SAICAR synthetase CFF04554_RS04730 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CFF04554_RS04735 PF13507 CobB/CobQ-like glutamine amidotransferase domain CFF04554_RS04745 PF01553 Acyltransferase CFF04554_RS04750 PF02537 CFF04554_RS04750 CFF04554_RS04755 PF03498 Cytolethal distending toxin A/C family CFF04554_RS04760 PF03372 Endonuclease/Exonuclease/phosphatase family CFF04554_RS04770 PF03498 Cytolethal distending toxin A/C family CFF04554_RS04775 PF03372 Endonuclease/Exonuclease/phosphatase family CFF04554_RS04780 PF03498 Cytolethal distending toxin A/C family CFF04554_RS04785 PF00183 Hsp90 protein CFF04554_RS04785 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS04790 PF00581 Rhodanese-like domain CFF04554_RS04795 PF13649 Methyltransferase domain CFF04554_RS04800 PF00580 UvrD/REP helicase N-terminal domain CFF04554_RS04800 PF13361 UvrD-like helicase C-terminal domain CFF04554_RS04810 PF00206 Lyase CFF04554_RS04810 PF10415 Fumarase C C-terminus CFF04554_RS04815 PF00133 tRNA synthetases class I (I, L, M and V) CFF04554_RS04815 PF08264 Anticodon-binding domain of tRNA CFF04554_RS04815 PF10458 Valyl tRNA synthetase tRNA binding arm CFF04554_RS04820 PF00005 ABC transporter CFF04554_RS04820 PF09383 NIL domain CFF04554_RS04825 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS04830 PF08543 Phosphomethylpyrimidine kinase CFF04554_RS04835 PF03180 NLPA lipoprotein CFF04554_RS04840 PF00830 Ribosomal L28 family CFF04554_RS04845 PF02080 TrkA-C domain CFF04554_RS04845 PF02254 TrkA-N domain CFF04554_RS04845 PF07885 Ion channel CFF04554_RS04850 PF01960 ArgJ family CFF04554_RS04855 PF04325 Protein of unknown function (DUF465) CFF04554_RS04860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS04860 PF13682 Chemoreceptor zinc-binding domain CFF04554_RS04865 PF05958 tRNA (Uracil-5-)-methyltransferase CFF04554_RS04870 PF00106 short chain dehydrogenase CFF04554_RS04875 PF12796 Ankyrin repeats (3 copies) CFF04554_RS04880 PF02080 TrkA-C domain CFF04554_RS04885 PF01702 Queuine tRNA-ribosyltransferase CFF04554_RS04890 PF01544 CorA-like Mg2+ transporter protein CFF04554_RS04895 PF00772 DnaB-like helicase N terminal domain CFF04554_RS04895 PF03796 DnaB-like helicase C terminal domain CFF04554_RS04900 PF04551 GcpE protein CFF04554_RS04910 PF11867 CFF04554_RS04910 CFF04554_RS04925 PF01152 Bacterial-like globin CFF04554_RS04940 PF00330 Aconitase family (aconitate hydratase) CFF04554_RS04940 PF06434 Aconitate hydratase 2 N-terminus CFF04554_RS04940 PF11791 Aconitate B N-terminal domain CFF04554_RS04945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFF04554_RS04950 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CFF04554_RS04955 PF01281 Ribosomal protein L9, N-terminal domain CFF04554_RS04955 PF03948 Ribosomal protein L9, C-terminal domain CFF04554_RS04960 PF00227 Proteasome subunit CFF04554_RS04965 PF07724 AAA domain (Cdc48 subfamily) CFF04554_RS04965 PF10431 C-terminal, D2-small domain, of ClpB protein CFF04554_RS04970 PF01926 50S ribosome-binding GTPase CFF04554_RS04970 PF07650 KH domain CFF04554_RS04995 PF00263 CFF04554_RS04995 CFF04554_RS04995 PF07655 CFF04554_RS04995 CFF04554_RS05000 PF13401 AAA domain CFF04554_RS05010 PF00437 Type II/IV secretion system protein CFF04554_RS05010 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CFF04554_RS05015 PF00482 Type II secretion system (T2SS), protein F CFF04554_RS05020 PF00989 PAS fold CFF04554_RS05025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS05030 PF09424 Yqey-like protein CFF04554_RS05035 PF02541 Ppx/GppA phosphatase family CFF04554_RS05040 PF01743 Poly A polymerase head domain CFF04554_RS05040 PF12627 Probable RNA and SrmB- binding site of polymerase A CFF04554_RS05055 PF00180 Isocitrate/isopropylmalate dehydrogenase CFF04554_RS05060 PF00694 Aconitase C-terminal domain CFF04554_RS05065 PF01810 CFF04554_RS05065 CFF04554_RS05070 PF01810 CFF04554_RS05070 CFF04554_RS05075 PF14358 CFF04554_RS05075 CFF04554_RS05080 PF00710 Asparaginase CFF04554_RS05085 PF02646 CFF04554_RS05085 CFF04554_RS05090 PF03547 CFF04554_RS05090 CFF04554_RS05095 PF03831 PhnA protein CFF04554_RS05100 PF01411 tRNA synthetases class II (A) CFF04554_RS05100 PF02272 DHHA1 domain CFF04554_RS05100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFF04554_RS05110 PF02545 Maf-like protein CFF04554_RS05115 PF00905 Penicillin binding protein transpeptidase domain CFF04554_RS05115 PF00912 Transglycosylase CFF04554_RS05120 PF02311 AraC-like ligand binding domain CFF04554_RS05125 PF01245 Ribosomal protein L19 CFF04554_RS05130 PF01746 tRNA (Guanine-1)-methyltransferase CFF04554_RS05135 PF01782 RimM N-terminal domain CFF04554_RS05135 PF05239 PRC-barrel domain CFF04554_RS05140 PF13083 KH domain CFF04554_RS05145 PF00886 Ribosomal protein S16 CFF04554_RS05150 PF00448 SRP54-type protein, GTPase domain CFF04554_RS05150 PF02881 SRP54-type protein, helical bundle domain CFF04554_RS05150 PF02978 Signal peptide binding domain CFF04554_RS05155 PF00939 Sodium:sulfate symporter transmembrane region CFF04554_RS05160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS05165 PF00849 RNA pseudouridylate synthase CFF04554_RS05170 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CFF04554_RS05175 PF02591 Putative zinc ribbon domain CFF04554_RS05180 PF01784 NIF3 (NGG1p interacting factor 3) CFF04554_RS05185 PF02091 Glycyl-tRNA synthetase alpha subunit CFF04554_RS05190 PF13118 CFF04554_RS05190 CFF04554_RS05195 PF00731 AIR carboxylase CFF04554_RS05200 PF01136 CFF04554_RS05200 CFF04554_RS05215 PF02811 PHP domain CFF04554_RS05220 PF00120 Glutamine synthetase, catalytic domain CFF04554_RS05220 PF03951 Glutamine synthetase, beta-Grasp domain CFF04554_RS05230 PF12796 Ankyrin repeats (3 copies) CFF04554_RS05235 PF00199 Catalase CFF04554_RS05235 PF06628 Catalase-related immune-responsive CFF04554_RS05240 PF07715 TonB-dependent Receptor Plug Domain CFF04554_RS05245 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS05245 PF02190 ATP-dependent protease La (LON) domain CFF04554_RS05245 PF05362 Lon protease (S16) C-terminal proteolytic domain CFF04554_RS05250 PF13525 Outer membrane lipoprotein CFF04554_RS05255 PF01614 Bacterial transcriptional regulator CFF04554_RS05255 PF09339 IclR helix-turn-helix domain CFF04554_RS05265 PF04295 CFF04554_RS05265 CFF04554_RS05270 PF13561 Enoyl-(Acyl carrier protein) reductase CFF04554_RS05275 PF07690 Major Facilitator Superfamily CFF04554_RS05280 PF04909 Amidohydrolase CFF04554_RS05280 PF05336 Domain of unknown function (DUF718) CFF04554_RS05285 PF02623 FliW protein CFF04554_RS05295 PF13633 Prokaryotic N-terminal methylation site CFF04554_RS05305 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CFF04554_RS05305 PF16321 CFF04554_RS05305 CFF04554_RS05310 PF01546 Peptidase family M20/M25/M40 CFF04554_RS05315 PF08003 Protein of unknown function (DUF1698) CFF04554_RS05325 PF00753 Metallo-beta-lactamase superfamily CFF04554_RS05330 PF02540 NAD synthase CFF04554_RS05335 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFF04554_RS05340 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CFF04554_RS05345 PF00696 Amino acid kinase family CFF04554_RS05350 PF00291 Pyridoxal-phosphate dependent enzyme CFF04554_RS05350 PF14821 Threonine synthase N terminus CFF04554_RS05355 PF02348 Cytidylyltransferase CFF04554_RS05360 PF11756 CFF04554_RS05360 CFF04554_RS05365 PF00990 GGDEF domain CFF04554_RS05370 PF00990 GGDEF domain CFF04554_RS05375 PF00085 Thioredoxin CFF04554_RS05375 PF02683 CFF04554_RS05375 CFF04554_RS05375 PF11412 Disulphide bond corrector protein DsbC CFF04554_RS05380 PF03976 Polyphosphate kinase 2 (PPK2) CFF04554_RS05385 PF00012 Hsp70 protein CFF04554_RS05390 PF01025 GrpE CFF04554_RS05400 PF01381 Helix-turn-helix CFF04554_RS05420 PF00771 FHIPEP family CFF04554_RS05425 PF02082 Transcriptional regulator CFF04554_RS05430 PF00312 Ribosomal protein S15 CFF04554_RS05435 PF00425 chorismate binding enzyme CFF04554_RS05440 PF01063 Aminotransferase class IV CFF04554_RS05445 PF12710 haloacid dehalogenase-like hydrolase CFF04554_RS05450 PF00005 ABC transporter CFF04554_RS05450 PF08402 TOBE domain CFF04554_RS05455 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS05465 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CFF04554_RS05475 PF13343 Bacterial extracellular solute-binding protein CFF04554_RS05505 PF16083 CFF04554_RS05505 CFF04554_RS05520 PF07087 CFF04554_RS05520 CFF04554_RS05620 PF05125 CFF04554_RS05620 CFF04554_RS05625 PF14550 CFF04554_RS05625 CFF04554_RS05630 PF04860 Phage portal protein CFF04554_RS05635 PF03237 Terminase-like family CFF04554_RS05695 PF13401 AAA domain CFF04554_RS05710 PF00665 Integrase core domain CFF04554_RS05730 PF13343 Bacterial extracellular solute-binding protein CFF04554_RS05735 PF13847 Methyltransferase domain CFF04554_RS05740 PF01687 Riboflavin kinase CFF04554_RS05740 PF06574 FAD synthetase CFF04554_RS05745 PF01479 S4 domain CFF04554_RS05745 PF01728 FtsJ-like methyltransferase CFF04554_RS05750 PF00533 BRCA1 C Terminus (BRCT) domain CFF04554_RS05750 PF01653 NAD-dependent DNA ligase adenylation domain CFF04554_RS05750 PF03120 NAD-dependent DNA ligase OB-fold domain CFF04554_RS05750 PF12826 Helix-hairpin-helix motif CFF04554_RS05755 PF00809 Pterin binding enzyme CFF04554_RS05760 PF13177 DNA polymerase III, delta subunit CFF04554_RS05765 PF12163 DNA replication regulator CFF04554_RS05770 PF00696 Amino acid kinase family CFF04554_RS05770 PF01842 ACT domain CFF04554_RS05770 PF13840 ACT domain CFF04554_RS05775 PF00293 NUDIX domain CFF04554_RS05780 PF04055 Radical SAM superfamily CFF04554_RS05785 PF02416 mttA/Hcf106 family CFF04554_RS05790 PF00902 Sec-independent protein translocase protein (TatC) CFF04554_RS05795 PF02547 Queuosine biosynthesis protein CFF04554_RS05805 PF01189 NOL1/NOP2/sun family CFF04554_RS05810 PF03652 Uncharacterised protein family (UPF0081) CFF04554_RS05820 PF04748 Divergent polysaccharide deacetylase CFF04554_RS05825 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CFF04554_RS05825 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain CFF04554_RS05830 PF08668 HDOD domain CFF04554_RS05835 PF00773 RNB domain CFF04554_RS05845 PF01250 Ribosomal protein S6 CFF04554_RS05850 PF00436 Single-strand binding protein family CFF04554_RS05855 PF01084 Ribosomal protein S18 CFF04554_RS05860 PF00226 DnaJ domain CFF04554_RS05860 PF00684 DnaJ central domain CFF04554_RS05860 PF01556 DnaJ C terminal domain CFF04554_RS05865 PF00072 Response regulator receiver domain CFF04554_RS05865 PF00486 Transcriptional regulatory protein, C terminal CFF04554_RS05875 PF02132 RecR protein CFF04554_RS05875 PF13662 Toprim domain CFF04554_RS05880 PF08501 Shikimate dehydrogenase substrate binding domain CFF04554_RS05885 PF05036 Sporulation related domain CFF04554_RS05890 PF08966 Domain of unknown function (DUF1882) CFF04554_RS05895 PF00464 Serine hydroxymethyltransferase CFF04554_RS05900 PF00152 tRNA synthetases class II (D, K and N) CFF04554_RS05900 PF01336 OB-fold nucleic acid binding domain CFF04554_RS05905 PF01475 Ferric uptake regulator family CFF04554_RS05910 PF02674 CFF04554_RS05910 CFF04554_RS05915 PF00437 Type II/IV secretion system protein CFF04554_RS05920 PF02686 Glu-tRNAGln amidotransferase C subunit CFF04554_RS05940 PF03309 Type III pantothenate kinase CFF04554_RS05945 PF01634 ATP phosphoribosyltransferase CFF04554_RS05950 PF05525 CFF04554_RS05950 CFF04554_RS05955 PF00149 Calcineurin-like phosphoesterase CFF04554_RS05960 PF02666 CFF04554_RS05960 CFF04554_RS05965 PF03927 NapD protein CFF04554_RS05975 PF00037 4Fe-4S binding domain CFF04554_RS05980 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CFF04554_RS05985 PF12801 CFF04554_RS05985 CFF04554_RS05985 PF13237 4Fe-4S dicluster domain CFF04554_RS05990 PF12838 4Fe-4S dicluster domain CFF04554_RS05995 PF00384 Molybdopterin oxidoreductase CFF04554_RS05995 PF01568 Molydopterin dinucleotide binding domain CFF04554_RS05995 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFF04554_RS06000 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS06005 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS06015 PF00005 ABC transporter CFF04554_RS06020 PF01926 50S ribosome-binding GTPase CFF04554_RS06020 PF06071 Protein of unknown function (DUF933) CFF04554_RS06025 PF00883 Cytosol aminopeptidase family, catalytic domain CFF04554_RS06025 PF02789 Cytosol aminopeptidase family, N-terminal domain CFF04554_RS06030 PF09335 CFF04554_RS06030 CFF04554_RS06035 PF00156 Phosphoribosyl transferase domain CFF04554_RS06045 PF02502 Ribose/Galactose Isomerase CFF04554_RS06050 PF02163 Peptidase family M50 CFF04554_RS06055 PF00717 Peptidase S24-like CFF04554_RS06060 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CFF04554_RS06060 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CFF04554_RS06065 PF00034 Cytochrome c CFF04554_RS06070 PF00202 Aminotransferase class-III CFF04554_RS06075 PF09527 CFF04554_RS06075 CFF04554_RS06085 PF07690 Major Facilitator Superfamily CFF04554_RS06095 PF01312 FlhB HrpN YscU SpaS Family CFF04554_RS06100 PF00905 Penicillin binding protein transpeptidase domain CFF04554_RS06100 PF03717 Penicillin-binding Protein dimerisation domain CFF04554_RS06110 PF13673 Acetyltransferase (GNAT) domain CFF04554_RS06115 PF01926 50S ribosome-binding GTPase CFF04554_RS06120 PF03968 OstA-like protein CFF04554_RS06135 PF00475 Imidazoleglycerol-phosphate dehydratase CFF04554_RS06140 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel CFF04554_RS06140 PF05036 Sporulation related domain CFF04554_RS06145 PF01464 Transglycosylase SLT domain CFF04554_RS06145 PF01476 LysM domain CFF04554_RS06150 PF01026 TatD related DNase CFF04554_RS06155 PF00072 Response regulator receiver domain CFF04554_RS06155 PF00990 GGDEF domain CFF04554_RS06160 PF02463 RecF/RecN/SMC N terminal domain CFF04554_RS06165 PF01513 ATP-NAD kinase CFF04554_RS06170 PF00152 tRNA synthetases class II (D, K and N) CFF04554_RS06170 PF01336 OB-fold nucleic acid binding domain CFF04554_RS06170 PF02938 GAD domain CFF04554_RS06175 PF00406 Adenylate kinase CFF04554_RS06180 PF00719 Inorganic pyrophosphatase CFF04554_RS06185 PF13673 Acetyltransferase (GNAT) domain CFF04554_RS06195 PF00005 ABC transporter CFF04554_RS06205 PF01497 Periplasmic binding protein CFF04554_RS06225 PF12833 Helix-turn-helix domain CFF04554_RS06230 PF01266 FAD dependent oxidoreductase CFF04554_RS06230 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CFF04554_RS06235 PF01520 N-acetylmuramoyl-L-alanine amidase CFF04554_RS06240 PF03060 Nitronate monooxygenase CFF04554_RS06245 PF00579 tRNA synthetases class I (W and Y) CFF04554_RS06250 PF02824 TGS domain CFF04554_RS06250 PF04607 Region found in RelA / SpoT proteins CFF04554_RS06250 PF13328 HD domain CFF04554_RS06255 PF01192 RNA polymerase Rpb6 CFF04554_RS06260 PF00696 Amino acid kinase family CFF04554_RS06265 PF01551 Peptidase family M23 CFF04554_RS06275 PF00005 ABC transporter CFF04554_RS06280 PF02390 Putative methyltransferase CFF04554_RS06290 PF00849 RNA pseudouridylate synthase CFF04554_RS06290 PF01479 S4 domain CFF04554_RS06295 PF01098 CFF04554_RS06295 CFF04554_RS06300 PF02630 SCO1/SenC CFF04554_RS06305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS06305 PF04740 CFF04554_RS06305 CFF04554_RS06310 PF01638 HxlR-like helix-turn-helix CFF04554_RS06315 PF13460 NADH(P)-binding CFF04554_RS06320 PF01545 Cation efflux family CFF04554_RS06325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS06325 PF12729 CFF04554_RS06325 CFF04554_RS06335 PF00474 Sodium:solute symporter family CFF04554_RS06340 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS06345 PF00005 ABC transporter CFF04554_RS06350 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFF04554_RS06355 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFF04554_RS06360 PF02581 Thiamine monophosphate synthase/TENI CFF04554_RS06365 PF02673 CFF04554_RS06365 CFF04554_RS06370 PF00266 Aminotransferase class-V CFF04554_RS06375 PF03008 CFF04554_RS06375 CFF04554_RS06380 PF00512 His Kinase A (phospho-acceptor) domain CFF04554_RS06380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS06385 PF02811 PHP domain CFF04554_RS06385 PF07733 Bacterial DNA polymerase III alpha subunit CFF04554_RS06385 PF14579 Helix-hairpin-helix motif CFF04554_RS06390 PF00076 RNA recognition motif CFF04554_RS06395 PF00171 Aldehyde dehydrogenase family CFF04554_RS06395 PF01619 Proline dehydrogenase CFF04554_RS06400 PF00474 Sodium:solute symporter family CFF04554_RS06405 PF03264 NapC/NirT cytochrome c family, N-terminal region CFF04554_RS06410 PF02335 Cytochrome c552 CFF04554_RS06415 PF01965 DJ-1/PfpI family CFF04554_RS06420 PF01132 Elongation factor P (EF-P) OB domain CFF04554_RS06420 PF08207 Elongation factor P (EF-P) KOW-like domain CFF04554_RS06420 PF09285 Elongation factor P, C-terminal CFF04554_RS06425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFF04554_RS06425 PF01842 ACT domain CFF04554_RS06425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFF04554_RS06435 PF00575 S1 RNA binding domain CFF04554_RS06440 PF02401 LytB protein CFF04554_RS06445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFF04554_RS06450 PF01588 Putative tRNA binding domain CFF04554_RS06450 PF03147 Ferredoxin-fold anticodon binding domain CFF04554_RS06450 PF03483 B3/4 domain CFF04554_RS06450 PF03484 tRNA synthetase B5 domain CFF04554_RS06455 PF01409 tRNA synthetases class II core domain (F) CFF04554_RS06455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CFF04554_RS06460 PF01230 HIT domain CFF04554_RS06470 PF00013 KH domain CFF04554_RS06470 PF00575 S1 RNA binding domain CFF04554_RS06470 PF01138 3' exoribonuclease family, domain 1 CFF04554_RS06470 PF03725 3' exoribonuclease family, domain 2 CFF04554_RS06470 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CFF04554_RS06475 PF00156 Phosphoribosyl transferase domain CFF04554_RS06480 PF13100 CFF04554_RS06480 CFF04554_RS06485 PF06271 CFF04554_RS06485 CFF04554_RS06490 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CFF04554_RS06490 PF02843 Phosphoribosylglycinamide synthetase, C domain CFF04554_RS06490 PF02844 Phosphoribosylglycinamide synthetase, N domain CFF04554_RS06495 PF02602 Uroporphyrinogen-III synthase HemD CFF04554_RS06500 PF03167 Uracil DNA glycosylase superfamily CFF04554_RS06505 PF00117 Glutamine amidotransferase class-I CFF04554_RS06505 PF00958 GMP synthase C terminal domain CFF04554_RS06505 PF02540 NAD synthase CFF04554_RS06515 PF01541 GIY-YIG catalytic domain CFF04554_RS06515 PF02151 UvrB/uvrC motif CFF04554_RS06515 PF08459 UvrC Helix-hairpin-helix N-terminal CFF04554_RS06525 PF00072 Response regulator receiver domain CFF04554_RS06525 PF00512 His Kinase A (phospho-acceptor) domain CFF04554_RS06525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFF04554_RS06525 PF08376 Nitrate and nitrite sensing CFF04554_RS06530 PF00072 Response regulator receiver domain CFF04554_RS06535 PF01243 Pyridoxamine 5'-phosphate oxidase CFF04554_RS06545 PF08761 dUTPase CFF04554_RS06550 PF07264 Etoposide-induced protein 2 CFF04554_RS06555 PF02690 CFF04554_RS06555 CFF04554_RS06565 PF04341 CFF04554_RS06565 CFF04554_RS06570 PF00474 Sodium:solute symporter family CFF04554_RS06575 PF03061 Thioesterase superfamily CFF04554_RS06580 PF01625 Peptide methionine sulfoxide reductase CFF04554_RS06580 PF01641 SelR domain CFF04554_RS06590 PF00137 ATP synthase subunit C CFF04554_RS06600 PF02694 CFF04554_RS06600 CFF04554_RS06605 PF13453 CFF04554_RS06605 CFF04554_RS06610 PF06719 CFF04554_RS06610 CFF04554_RS06610 PF12833 Helix-turn-helix domain CFF04554_RS06615 PF00465 Iron-containing alcohol dehydrogenase CFF04554_RS06620 PF12833 Helix-turn-helix domain CFF04554_RS06640 PF00209 Sodium:neurotransmitter symporter family CFF04554_RS06645 PF00364 Biotin-requiring enzyme CFF04554_RS06645 PF00682 HMGL-like CFF04554_RS06645 PF02436 Conserved carboxylase domain CFF04554_RS06650 PF01293 Phosphoenolpyruvate carboxykinase CFF04554_RS06655 PF00206 Lyase CFF04554_RS06655 PF14698 Argininosuccinate lyase C-terminal CFF04554_RS06660 PF04023 FeoA domain CFF04554_RS06670 PF02525 Flavodoxin-like fold CFF04554_RS06680 PF00394 Multicopper oxidase CFF04554_RS06680 PF07731 Multicopper oxidase CFF04554_RS06680 PF07732 Multicopper oxidase CFF04554_RS06705 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS06705 PF00679 Elongation factor G C-terminus CFF04554_RS06705 PF03144 Elongation factor Tu domain 2 CFF04554_RS06705 PF03764 Elongation factor G, domain IV CFF04554_RS06705 PF14492 Elongation Factor G, domain II CFF04554_RS06710 PF00177 Ribosomal protein S7p/S5e CFF04554_RS06715 PF00164 Ribosomal protein S12/S23 CFF04554_RS06720 PF00623 RNA polymerase Rpb1, domain 2 CFF04554_RS06720 PF04983 RNA polymerase Rpb1, domain 3 CFF04554_RS06720 PF04997 RNA polymerase Rpb1, domain 1 CFF04554_RS06720 PF04998 RNA polymerase Rpb1, domain 5 CFF04554_RS06720 PF05000 RNA polymerase Rpb1, domain 4 CFF04554_RS06725 PF00562 RNA polymerase Rpb2, domain 6 CFF04554_RS06725 PF04560 RNA polymerase Rpb2, domain 7 CFF04554_RS06725 PF04561 RNA polymerase Rpb2, domain 2 CFF04554_RS06725 PF04563 RNA polymerase beta subunit CFF04554_RS06725 PF04565 RNA polymerase Rpb2, domain 3 CFF04554_RS06725 PF10385 RNA polymerase beta subunit external 1 domain CFF04554_RS06730 PF00542 Ribosomal protein L7/L12 C-terminal domain CFF04554_RS06730 PF16320 CFF04554_RS06730 CFF04554_RS06735 PF00466 Ribosomal protein L10 CFF04554_RS06740 PF00687 Ribosomal protein L1p/L10e family CFF04554_RS06745 PF00298 Ribosomal protein L11, RNA binding domain CFF04554_RS06745 PF03946 Ribosomal protein L11, N-terminal domain CFF04554_RS06750 PF00467 KOW motif CFF04554_RS06750 PF02357 Transcription termination factor nusG CFF04554_RS06755 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CFF04554_RS06765 PF00471 Ribosomal protein L33 CFF04554_RS06770 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS06770 PF03143 Elongation factor Tu C-terminal domain CFF04554_RS06770 PF03144 Elongation factor Tu domain 2 CFF04554_RS06795 PF00080 Copper/zinc superoxide dismutase (SODC) CFF04554_RS06805 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CFF04554_RS06810 PF01029 NusB family CFF04554_RS06815 PF00885 6,7-dimethyl-8-ribityllumazine synthase CFF04554_RS06820 PF00893 Small Multidrug Resistance protein CFF04554_RS06825 PF00893 Small Multidrug Resistance protein CFF04554_RS06830 PF00793 DAHP synthetase I family CFF04554_RS06835 PF00892 EamA-like transporter family CFF04554_RS06840 PF01926 50S ribosome-binding GTPase CFF04554_RS06840 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CFF04554_RS06845 PF01202 Shikimate kinase CFF04554_RS06850 PF00579 tRNA synthetases class I (W and Y) CFF04554_RS06855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFF04554_RS06855 PF02403 Seryl-tRNA synthetase N-terminal domain CFF04554_RS06860 PF13181 Tetratricopeptide repeat CFF04554_RS06860 PF13432 Tetratricopeptide repeat CFF04554_RS06865 PF00682 HMGL-like CFF04554_RS06865 PF08502 LeuA allosteric (dimerisation) domain CFF04554_RS06870 PF01066 CDP-alcohol phosphatidyltransferase CFF04554_RS06875 PF02666 CFF04554_RS06875 CFF04554_RS06880 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS06880 PF01434 Peptidase family M41 CFF04554_RS06880 PF06480 FtsH Extracellular CFF04554_RS06885 PF06325 Ribosomal protein L11 methyltransferase (PrmA) CFF04554_RS06890 PF00072 Response regulator receiver domain CFF04554_RS06895 PF00977 Histidine biosynthesis protein CFF04554_RS06900 PF00117 Glutamine amidotransferase class-I CFF04554_RS06910 PF02719 Polysaccharide biosynthesis protein CFF04554_RS06915 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFF04554_RS06920 PF02525 Flavodoxin-like fold CFF04554_RS06930 PF08245 Mur ligase middle domain CFF04554_RS06935 PF00953 Glycosyl transferase family 4 CFF04554_RS06935 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CFF04554_RS06940 PF01676 Metalloenzyme superfamily CFF04554_RS06940 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CFF04554_RS06945 PF13561 Enoyl-(Acyl carrier protein) reductase CFF04554_RS06950 PF00550 Phosphopantetheine attachment site CFF04554_RS06955 PF00109 Beta-ketoacyl synthase, N-terminal domain CFF04554_RS06955 PF02801 Beta-ketoacyl synthase, C-terminal domain CFF04554_RS06960 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CFF04554_RS06970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFF04554_RS06970 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFF04554_RS06980 PF00472 RF-1 domain CFF04554_RS06980 PF03462 PCRF domain CFF04554_RS06985 PF02569 Pantoate-beta-alanine ligase CFF04554_RS06990 PF00919 Uncharacterized protein family UPF0004 CFF04554_RS06990 PF04055 Radical SAM superfamily CFF04554_RS06995 PF01171 PP-loop family CFF04554_RS07015 PF04028 CFF04554_RS07015 CFF04554_RS07020 PF00919 Uncharacterized protein family UPF0004 CFF04554_RS07020 PF01938 TRAM domain CFF04554_RS07020 PF04055 Radical SAM superfamily CFF04554_RS07030 PF08529 NusA N-terminal domain CFF04554_RS07030 PF13184 NusA-like KH domain CFF04554_RS07035 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS07040 PF02397 CFF04554_RS07040 CFF04554_RS07045 PF00534 Glycosyl transferases group 1 CFF04554_RS07045 PF13477 Glycosyl transferase 4-like CFF04554_RS07050 PF02516 Oligosaccharyl transferase STT3 subunit CFF04554_RS07055 PF00534 Glycosyl transferases group 1 CFF04554_RS07055 PF13439 Glycosyltransferase Family 4 CFF04554_RS07060 PF00534 Glycosyl transferases group 1 CFF04554_RS07065 PF00534 Glycosyl transferases group 1 CFF04554_RS07065 PF13439 Glycosyltransferase Family 4 CFF04554_RS07070 PF01943 CFF04554_RS07070 CFF04554_RS07075 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFF04554_RS07075 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFF04554_RS07075 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFF04554_RS07080 PF01370 NAD dependent epimerase/dehydratase family CFF04554_RS07100 PF01370 NAD dependent epimerase/dehydratase family CFF04554_RS07105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFF04554_RS07105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFF04554_RS07105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFF04554_RS07110 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB CFF04554_RS07115 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS07120 PF03279 CFF04554_RS07120 CFF04554_RS07125 PF00535 Glycosyl transferase family 2 CFF04554_RS07130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS07135 PF01522 Polysaccharide deacetylase CFF04554_RS07140 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS07145 PF00534 Glycosyl transferases group 1 CFF04554_RS07150 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS07155 PF00534 Glycosyl transferases group 1 CFF04554_RS07155 PF13439 Glycosyltransferase Family 4 CFF04554_RS07160 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS07170 PF00534 Glycosyl transferases group 1 CFF04554_RS07170 PF13439 Glycosyltransferase Family 4 CFF04554_RS07175 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS07180 PF13580 SIS domain CFF04554_RS07190 PF00294 pfkB family carbohydrate kinase CFF04554_RS07190 PF01467 Cytidylyltransferase CFF04554_RS07195 PF01370 NAD dependent epimerase/dehydratase family CFF04554_RS07200 PF13242 HAD-hyrolase-like CFF04554_RS07205 PF00034 Cytochrome c CFF04554_RS07210 PF00082 Subtilase family CFF04554_RS07210 PF03797 Autotransporter beta-domain CFF04554_RS07215 PF00034 Cytochrome c CFF04554_RS07220 PF03597 CFF04554_RS07220 CFF04554_RS07225 PF00122 E1-E2 ATPase CFF04554_RS07225 PF00403 Heavy-metal-associated domain CFF04554_RS07225 PF00702 haloacid dehalogenase-like hydrolase CFF04554_RS07225 PF12156 CFF04554_RS07225 CFF04554_RS07235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFF04554_RS07235 PF07497 Rho termination factor, RNA-binding domain CFF04554_RS07235 PF07498 Rho termination factor, N-terminal domain CFF04554_RS07240 PF13177 DNA polymerase III, delta subunit CFF04554_RS07265 PF13561 Enoyl-(Acyl carrier protein) reductase CFF04554_RS07270 PF00121 Triosephosphate isomerase CFF04554_RS07275 PF00162 Phosphoglycerate kinase CFF04554_RS07280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFF04554_RS07280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CFF04554_RS07285 PF01467 Cytidylyltransferase CFF04554_RS07290 PF02410 Oligomerisation domain CFF04554_RS07295 PF03601 CFF04554_RS07295 CFF04554_RS07300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFF04554_RS07300 PF03466 LysR substrate binding domain CFF04554_RS07305 PF00750 tRNA synthetases class I (R) CFF04554_RS07305 PF03485 Arginyl tRNA synthetase N terminal domain CFF04554_RS07305 PF05746 DALR anticodon binding domain CFF04554_RS07310 PF02416 mttA/Hcf106 family CFF04554_RS07315 PF00625 Guanylate kinase CFF04554_RS07325 PF01311 CFF04554_RS07325 CFF04554_RS07335 PF00005 ABC transporter CFF04554_RS07340 PF00889 Elongation factor TS CFF04554_RS07345 PF00318 Ribosomal protein S2 CFF04554_RS07355 PF02578 Multi-copper polyphenol oxidoreductase laccase CFF04554_RS07360 PF00677 Lumazine binding domain CFF04554_RS07365 PF01134 Glucose inhibited division protein A CFF04554_RS07365 PF13932 GidA associated domain 3 CFF04554_RS07370 PF00355 Rieske [2Fe-2S] domain CFF04554_RS07370 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CFF04554_RS07375 PF00032 Cytochrome b(C-terminal)/b6/petD CFF04554_RS07375 PF00033 Cytochrome b(N-terminal)/b6/petB CFF04554_RS07380 PF00034 Cytochrome c CFF04554_RS07400 PF00589 Phage integrase family CFF04554_RS07405 PF05840 CFF04554_RS07405 CFF04554_RS07415 PF01402 Ribbon-helix-helix protein, copG family CFF04554_RS07425 PF04055 Radical SAM superfamily CFF04554_RS07430 PF01208 Uroporphyrinogen decarboxylase (URO-D) CFF04554_RS07435 PF03350 CFF04554_RS07435 CFF04554_RS07440 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFF04554_RS07440 PF02774 Semialdehyde dehydrogenase, dimerisation domain CFF04554_RS07445 PF00072 Response regulator receiver domain CFF04554_RS07445 PF00158 Sigma-54 interaction domain CFF04554_RS07455 PF02169 LPP20 lipoprotein CFF04554_RS07460 PF00521 DNA gyrase/topoisomerase IV, subunit A CFF04554_RS07460 PF03989 DNA gyrase C-terminal domain, beta-propeller CFF04554_RS07495 PF03923 CFF04554_RS07495 CFF04554_RS07505 PF01361 Tautomerase enzyme CFF04554_RS07510 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS07510 PF00679 Elongation factor G C-terminus CFF04554_RS07510 PF03144 Elongation factor Tu domain 2 CFF04554_RS07510 PF06421 GTP-binding protein LepA C-terminus CFF04554_RS07515 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CFF04554_RS07515 PF14572 Phosphoribosyl synthetase-associated domain CFF04554_RS07520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFF04554_RS07520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFF04554_RS07525 PF01979 Amidohydrolase family CFF04554_RS07535 PF07963 Prokaryotic N-terminal methylation motif CFF04554_RS07545 PF03054 tRNA methyl transferase CFF04554_RS07550 PF01292 Prokaryotic cytochrome b561 CFF04554_RS07560 PF03641 Possible lysine decarboxylase CFF04554_RS07565 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFF04554_RS07565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CFF04554_RS07570 PF00310 Glutamine amidotransferases class-II CFF04554_RS07570 PF01493 GXGXG motif CFF04554_RS07570 PF01645 Conserved region in glutamate synthase CFF04554_RS07570 PF04898 Glutamate synthase central domain CFF04554_RS07575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CFF04554_RS07590 PF02576 Uncharacterised BCR, YhbC family COG0779 CFF04554_RS07595 PF02033 Ribosome-binding factor A CFF04554_RS07600 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS07600 PF04760 Translation initiation factor IF-2, N-terminal region CFF04554_RS07600 PF11987 Translation-initiation factor 2 CFF04554_RS07605 PF04296 Protein of unknown function (DUF448) CFF04554_RS07610 PF00288 GHMP kinases N terminal domain CFF04554_RS07620 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CFF04554_RS07625 PF02567 Phenazine biosynthesis-like protein CFF04554_RS07630 PF01551 Peptidase family M23 CFF04554_RS07635 PF02153 Prephenate dehydrogenase CFF04554_RS07640 PF01103 Surface antigen CFF04554_RS07640 PF07244 Surface antigen variable number repeat CFF04554_RS07645 PF03473 MOSC domain CFF04554_RS07650 PF01343 Peptidase family S49 CFF04554_RS07655 PF01979 Amidohydrolase family CFF04554_RS07660 PF01220 Dehydroquinase class II CFF04554_RS07665 PF00557 Metallopeptidase family M24 CFF04554_RS07670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CFF04554_RS07675 PF00448 SRP54-type protein, GTPase domain CFF04554_RS07680 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CFF04554_RS07690 PF04542 Sigma-70 region 2 CFF04554_RS07690 PF04545 Sigma-70, region 4 CFF04554_RS07695 PF01052 Surface presentation of antigens (SPOA) CFF04554_RS07695 PF02154 Flagellar motor switch protein FliM CFF04554_RS07700 PF01052 Surface presentation of antigens (SPOA) CFF04554_RS07705 PF01171 PP-loop family CFF04554_RS07710 PF01048 Phosphorylase superfamily CFF04554_RS07715 PF00698 Acyl transferase domain CFF04554_RS07720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFF04554_RS07730 PF00691 OmpA family CFF04554_RS07735 PF07676 WD40-like Beta Propeller Repeat CFF04554_RS07740 PF13103 TonB C terminal CFF04554_RS07745 PF02472 Biopolymer transport protein ExbD/TolR CFF04554_RS07750 PF01618 CFF04554_RS07750 CFF04554_RS07755 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CFF04554_RS07760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFF04554_RS07760 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFF04554_RS07765 PF00231 ATP synthase CFF04554_RS07770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFF04554_RS07770 PF00306 ATP synthase alpha/beta chain, C terminal domain CFF04554_RS07770 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFF04554_RS07775 PF00213 ATP synthase delta (OSCP) subunit CFF04554_RS07780 PF00430 ATP synthase B/B' CF(0) CFF04554_RS07785 PF00430 ATP synthase B/B' CF(0) CFF04554_RS07790 PF02195 ParB-like nuclease domain CFF04554_RS07795 PF13614 AAA domain CFF04554_RS07800 PF03099 Biotin/lipoate A/B protein ligase family CFF04554_RS07805 PF00551 Formyl transferase CFF04554_RS07805 PF02911 Formyl transferase, C-terminal domain CFF04554_RS07810 PF00696 Amino acid kinase family CFF04554_RS07815 PF01018 GTP1/OBG CFF04554_RS07815 PF01926 50S ribosome-binding GTPase CFF04554_RS07820 PF01016 Ribosomal L27 protein CFF04554_RS07825 PF00829 Ribosomal prokaryotic L21 protein CFF04554_RS07830 PF00034 Cytochrome c CFF04554_RS07830 PF03150 Di-haem cytochrome c peroxidase CFF04554_RS07835 PF13247 4Fe-4S dicluster domain CFF04554_RS07840 PF00384 Molybdopterin oxidoreductase CFF04554_RS07840 PF01568 Molydopterin dinucleotide binding domain CFF04554_RS07845 PF00384 Molybdopterin oxidoreductase CFF04554_RS07845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFF04554_RS07860 PF12838 4Fe-4S dicluster domain CFF04554_RS07860 PF13237 4Fe-4S dicluster domain CFF04554_RS07865 PF03841 L-seryl-tRNA selenium transferase CFF04554_RS07870 PF00009 Elongation factor Tu GTP binding domain CFF04554_RS07870 PF09107 Elongation factor SelB, winged helix CFF04554_RS07875 PF13098 Thioredoxin-like domain CFF04554_RS07880 PF02348 Cytidylyltransferase CFF04554_RS07890 PF13535 ATP-grasp domain CFF04554_RS07895 PF13649 Methyltransferase domain CFF04554_RS07900 PF13489 Methyltransferase domain CFF04554_RS07905 PF03102 NeuB family CFF04554_RS07905 PF08666 SAF domain CFF04554_RS07910 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFF04554_RS07910 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CFF04554_RS07915 PF02621 Menaquinone biosynthesis CFF04554_RS07920 PF14681 Uracil phosphoribosyltransferase CFF04554_RS07925 PF00390 Malic enzyme, N-terminal domain CFF04554_RS07925 PF03949 Malic enzyme, NAD binding domain CFF04554_RS07930 PF12802 MarR family CFF04554_RS07935 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFF04554_RS07940 PF13624 SurA N-terminal domain CFF04554_RS07945 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CFF04554_RS07945 PF02785 Biotin carboxylase C-terminal domain CFF04554_RS07945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFF04554_RS07950 PF00364 Biotin-requiring enzyme CFF04554_RS07955 PF00692 dUTPase CFF04554_RS07960 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFF04554_RS07965 PF02754 CFF04554_RS07965 CFF04554_RS07965 PF13183 4Fe-4S dicluster domain CFF04554_RS07970 PF03807 NADP oxidoreductase coenzyme F420-dependent CFF04554_RS07970 PF14748 Pyrroline-5-carboxylate reductase dimerisation CFF04554_RS07980 PF04055 Radical SAM superfamily CFF04554_RS07980 PF06969 HemN C-terminal domain CFF04554_RS07985 PF10788 CFF04554_RS07985 CFF04554_RS07990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFF04554_RS07990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFF04554_RS07995 PF00490 Delta-aminolevulinic acid dehydratase CFF04554_RS08000 PF00925 GTP cyclohydrolase II CFF04554_RS08005 PF02527 rRNA small subunit methyltransferase G CFF04554_RS08020 PF01435 Peptidase family M48 CFF04554_RS08025 PF00842 Alanine racemase, C-terminal domain CFF04554_RS08025 PF01168 Alanine racemase, N-terminal domain CFF04554_RS08035 PF03734 L,D-transpeptidase catalytic domain CFF04554_RS08040 PF04314 Protein of unknown function (DUF461) CFF04554_RS08055 PF13186 Iron-sulfur cluster-binding domain CFF04554_RS08060 PF04055 Radical SAM superfamily CFF04554_RS08060 PF13186 Iron-sulfur cluster-binding domain CFF04554_RS08065 PF00456 Transketolase, thiamine diphosphate binding domain CFF04554_RS08070 PF02779 Transketolase, pyrimidine binding domain CFF04554_RS08075 PF13847 Methyltransferase domain CFF04554_RS08080 PF04055 Radical SAM superfamily CFF04554_RS08080 PF13353 4Fe-4S single cluster domain CFF04554_RS08090 PF04055 Radical SAM superfamily CFF04554_RS08090 PF13186 Iron-sulfur cluster-binding domain CFF04554_RS08090 PF13353 4Fe-4S single cluster domain CFF04554_RS08100 PF08421 Putative zinc binding domain CFF04554_RS08100 PF08484 C-methyltransferase C-terminal domain CFF04554_RS08100 PF13489 Methyltransferase domain CFF04554_RS08105 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFF04554_RS08110 PF00551 Formyl transferase CFF04554_RS08110 PF02911 Formyl transferase, C-terminal domain CFF04554_RS08115 PF00132 Bacterial transferase hexapeptide (six repeats) CFF04554_RS08120 PF04055 Radical SAM superfamily CFF04554_RS08120 PF13186 Iron-sulfur cluster-binding domain CFF04554_RS08130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFF04554_RS08145 PF00733 Asparagine synthase CFF04554_RS08145 PF13537 Glutamine amidotransferase domain CFF04554_RS08150 PF00534 Glycosyl transferases group 1 CFF04554_RS08165 PF13489 Methyltransferase domain CFF04554_RS08170 PF00534 Glycosyl transferases group 1 CFF04554_RS08170 PF13439 Glycosyltransferase Family 4 CFF04554_RS08175 PF00733 Asparagine synthase CFF04554_RS08175 PF13537 Glutamine amidotransferase domain CFF04554_RS08180 PF04007 CFF04554_RS08180 CFF04554_RS08185 PF13578 Methyltransferase domain CFF04554_RS08225 PF01583 Adenylylsulphate kinase CFF04554_RS08230 PF08241 Methyltransferase domain CFF04554_RS08235 PF08241 Methyltransferase domain CFF04554_RS08240 PF00391 PEP-utilising enzyme, mobile domain CFF04554_RS08245 PF00117 Glutamine amidotransferase class-I CFF04554_RS08250 PF00483 Nucleotidyl transferase CFF04554_RS08255 PF02719 Polysaccharide biosynthesis protein CFF04554_RS08260 PF00583 Acetyltransferase (GNAT) family CFF04554_RS08265 PF00669 Bacterial flagellin N-terminal helical region CFF04554_RS08265 PF00700 Bacterial flagellin C-terminal helical region CFF04554_RS08265 PF07196 Flagellin hook IN motif CFF04554_RS08270 PF00669 Bacterial flagellin N-terminal helical region CFF04554_RS08270 PF00700 Bacterial flagellin C-terminal helical region CFF04554_RS08270 PF07196 Flagellin hook IN motif CFF04554_RS08275 PF10119 CFF04554_RS08275 CFF04554_RS08275 PF13649 Methyltransferase domain CFF04554_RS08280 PF01973 CFF04554_RS08280 CFF04554_RS08290 PF01594 CFF04554_RS08290 CFF04554_RS08295 PF02386 Cation transport protein CFF04554_RS08300 PF02254 TrkA-N domain CFF04554_RS08305 PF00206 Lyase CFF04554_RS08305 PF10415 Fumarase C C-terminus CFF04554_RS08310 PF03605 CFF04554_RS08310 CFF04554_RS08320 PF02600 Disulfide bond formation protein DsbB CFF04554_RS08325 PF00593 TonB dependent receptor CFF04554_RS08325 PF07715 TonB-dependent Receptor Plug Domain CFF04554_RS08330 PF01618 CFF04554_RS08330 CFF04554_RS08335 PF02472 Biopolymer transport protein ExbD/TolR CFF04554_RS08340 PF03544 Gram-negative bacterial TonB protein C-terminal CFF04554_RS08345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFF04554_RS08350 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS08355 PF00528 Binding-protein-dependent transport system inner membrane component CFF04554_RS08360 PF00005 ABC transporter CFF04554_RS08365 PF00005 ABC transporter CFF04554_RS08390 PF03738 Glutathionylspermidine synthase preATP-grasp CFF04554_RS08395 PF02441 Flavoprotein CFF04554_RS08400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFF04554_RS08400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFF04554_RS08405 PF04461 Protein of unknown function (DUF520) CFF04554_RS08415 PF04055 Radical SAM superfamily CFF04554_RS08420 PF00004 ATPase family associated with various cellular activities (AAA) CFF04554_RS08425 PF00501 AMP-binding enzyme CFF04554_RS08425 PF13193 AMP-binding enzyme C-terminal domain CFF04554_RS08435 PF01261 Xylose isomerase-like TIM barrel CFF04554_RS08460 PF03787 RAMP superfamily CFF04554_RS08480 PF03787 RAMP superfamily CFF04554_RS08510 PF03741 CFF04554_RS08510 CFF04554_RS08515 PF00551 Formyl transferase CFF04554_RS08520 PF01256 Carbohydrate kinase CFF04554_RS08520 PF03853 YjeF-related protein N-terminus CFF04554_RS08525 PF01078 Magnesium chelatase, subunit ChlI CFF04554_RS08525 PF13335 CFF04554_RS08525 CFF04554_RS08525 PF13541 Subunit ChlI of Mg-chelatase CFF04554_RS08530 PF01327 Polypeptide deformylase CFF04554_RS08535 PF00990 GGDEF domain CFF04554_RS08540 PF00574 Clp protease CFF04554_RS08545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFF04554_RS08545 PF05697 Bacterial trigger factor protein (TF) CFF04554_RS08545 PF05698 Bacterial trigger factor protein (TF) C-terminus CFF04554_RS08550 PF01227 GTP cyclohydrolase I CFF04554_RS08555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFF04554_RS08560 PF00266 Aminotransferase class-V CFF04554_RS08565 PF01106 NifU-like domain CFF04554_RS08565 PF01592 NifU-like N terminal domain CFF04554_RS08565 PF04324 BFD-like [2Fe-2S] binding domain CFF04554_RS08575 PF01814 Hemerythrin HHE cation binding domain CFF04554_RS08580 PF05154 CFF04554_RS08580 CFF04554_RS08585 PF00707 Translation initiation factor IF-3, C-terminal domain CFF04554_RS08585 PF05198 Translation initiation factor IF-3, N-terminal domain CFF04554_RS08590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFF04554_RS08590 PF03129 Anticodon binding domain CFF04554_RS08590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFF04554_RS08600 PF05016 Plasmid stabilisation system protein CFF04554_RS08630 PF00589 Phage integrase family CFF04554_RS08630 PF14659 Phage integrase, N-terminal SAM-like domain CFF04554_RS08640 PF03653 CFF04554_RS08640 CFF04554_RS08645 PF05154 CFF04554_RS08645 CFF04554_RS08650 PF01252 CFF04554_RS08650 CFF04554_RS08655 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFF04554_RS08655 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFF04554_RS08655 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFF04554_RS08655 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFF04554_RS08660 PF01649 Ribosomal protein S20 CFF04554_RS08665 PF00472 RF-1 domain CFF04554_RS08665 PF03462 PCRF domain CFF04554_RS08670 PF04237 YjbR CFF04554_RS08675 PF00857 Isochorismatase family CFF04554_RS08680 PF03372 Endonuclease/Exonuclease/phosphatase family CFF04554_RS08685 PF00884 Sulfatase CFF04554_RS08685 PF08019 CFF04554_RS08685 CFF04554_RS08690 PF01219 Prokaryotic diacylglycerol kinase CFF04554_RS08695 PF05732 CFF04554_RS08695 CFF04554_RS08700 PF02659 CFF04554_RS08700 CFF04554_RS08705 PF00892 EamA-like transporter family CFF04554_RS08710 PF00950 CFF04554_RS08710 CFF04554_RS08715 PF00005 ABC transporter CFF04554_RS08720 PF03824 CFF04554_RS08720 CFF04554_RS08720 PF06226 CFF04554_RS08720 CFF04554_RS08725 PF01297 Periplasmic solute binding protein family CFF04554_RS08725 PF09223 YodA lipocalin-like domain CFF04554_RS08730 PF01475 Ferric uptake regulator family CFF04554_RS08735 PF03150 Di-haem cytochrome c peroxidase CFF04554_RS08740 PF00563 EAL domain CFF04554_RS08740 PF00990 GGDEF domain CFF04554_RS08740 PF13426 PAS domain CFF04554_RS08745 PF00484 Carbonic anhydrase CFF04554_RS08750 PF00924 Mechanosensitive ion channel CFF04554_RS08760 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CFF04554_RS08765 PF01264 Chorismate synthase CFF04554_RS08770 PF00035 Double-stranded RNA binding motif CFF04554_RS08770 PF14622 Ribonuclease-III-like CFF04554_RS08775 PF00075 RNase H CFF04554_RS08780 PF13176 Tetratricopeptide repeat CFF04554_RS08780 PF13181 Tetratricopeptide repeat CFF04554_RS08785 PF01807 CHC2 zinc finger CFF04554_RS08785 PF08275 DNA primase catalytic core, N-terminal domain CFF04554_RS08785 PF13662 Toprim domain CFF04554_RS08785 PF16730 CFF04554_RS08785 CFF04554_RS08790 PF02568 Thiamine biosynthesis protein (ThiI) CFF04554_RS08795 PF13186 Iron-sulfur cluster-binding domain CFF04554_RS08800 PF04402 Protein of unknown function (DUF541) CFF04554_RS08805 PF03553 CFF04554_RS08805 CFF04554_RS08805 PF13726 CFF04554_RS08805 CFF04554_RS08815 PF03062 CFF04554_RS08815 CFF04554_RS08820 PF00920 Dehydratase family CFF04554_RS08825 PF02872 5'-nucleotidase, C-terminal domain CFF04554_RS08825 PF09587 Bacterial capsule synthesis protein PGA_cap CFF04554_RS08830 PF00117 Glutamine amidotransferase class-I CFF04554_RS08830 PF06418 CTP synthase N-terminus CFF04554_RS08835 PF01368 DHH family CFF04554_RS08835 PF02272 DHHA1 domain CFF04554_RS08840 PF06965 Na+/H+ antiporter 1 CFF04554_RS08845 PF00005 ABC transporter CFF04554_RS08845 PF00664 ABC transporter transmembrane region CFF04554_RS08850 PF01243 Pyridoxamine 5'-phosphate oxidase CFF04554_RS08850 PF10615 Protein of unknown function (DUF2470) CFF04554_RS08855 PF00593 TonB dependent receptor CFF04554_RS08855 PF07715 TonB-dependent Receptor Plug Domain CFF04554_RS08860 PF01032 FecCD transport family CFF04554_RS08865 PF00005 ABC transporter CFF04554_RS08870 PF01497 Periplasmic binding protein CFF04554_RS08875 PF12641 CFF04554_RS08875 CFF04554_RS08880 PF00199 Catalase CFF04554_RS08895 PF00460 Flagella basal body rod protein CFF04554_RS08895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFF04554_RS08895 PF07196 Flagellin hook IN motif CFF04554_RS08895 PF07559 Flagellar basal body protein FlaE CFF04554_RS08900 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CFF04554_RS08905 PF01678 Diaminopimelate epimerase CFF04554_RS08910 PF01121 Dephospho-CoA kinase CFF04554_RS08915 PF01042 Endoribonuclease L-PSP CFF04554_RS08920 PF00586 AIR synthase related protein, N-terminal domain CFF04554_RS08920 PF02769 AIR synthase related protein, C-terminal domain CFF04554_RS08925 PF01734 Patatin-like phospholipase CFF04554_RS08930 PF05496 Holliday junction DNA helicase ruvB N-terminus CFF04554_RS08930 PF12002 MgsA AAA+ ATPase C terminal CFF04554_RS08930 PF16193 CFF04554_RS08930 CFF04554_RS08935 PF00892 EamA-like transporter family CFF04554_RS08940 PF08534 Redoxin CFF04554_RS08945 PF06271 CFF04554_RS08945 CFF04554_RS08950 PF00156 Phosphoribosyl transferase domain CFF04554_RS08955 PF01765 Ribosome recycling factor CFF04554_RS08960 PF01522 Polysaccharide deacetylase CFF04554_RS08965 PF03840 Preprotein translocase SecG subunit CFF04554_RS08970 PF01027 Inhibitor of apoptosis-promoting Bax1 CFF04554_RS09010 PF02525 Flavodoxin-like fold CFF04554_RS09015 PF12682 Flavodoxin CFF04554_RS09025 PF10109 CFF04554_RS09025 CFF04554_RS09030 PF02511 Thymidylate synthase complementing protein CFF04554_RS09035 PF00732 GMC oxidoreductase CFF04554_RS09035 PF05199 GMC oxidoreductase CFF04554_RS09040 PF13618 CFF04554_RS09040 CFF04554_RS09045 PF07681 CFF04554_RS09045 CFF04554_RS09050 PF00881 Nitroreductase family CFF04554_RS09060 PF04471 Restriction endonuclease CFF04554_RS09060 PF14338 CFF04554_RS09060 CFF04554_RS09065 PF00849 RNA pseudouridylate synthase CFF04554_RS09065 PF01479 S4 domain CFF04554_RS09070 PF00571 CBS domain CFF04554_RS09070 PF01380 SIS domain CFF04554_RS09075 PF00753 Metallo-beta-lactamase superfamily CFF04554_RS09075 PF07521 RNA-metabolising metallo-beta-lactamase CFF04554_RS09080 PF00398 Ribosomal RNA adenine dimethylase CFF04554_RS09085 PF05977 Transmembrane secretion effector CFF04554_RS09090 PF00977 Histidine biosynthesis protein CFF04554_RS09095 PF01048 Phosphorylase superfamily CFF04554_RS09100 PF04055 Radical SAM superfamily CFF04554_RS09105 PF04993 TfoX N-terminal domain CFF04554_RS09110 PF00849 RNA pseudouridylate synthase CFF04554_RS09115 PF00206 Lyase CFF04554_RS09115 PF10397 Adenylosuccinate lyase C-terminus CFF04554_RS09120 PF00317 Ribonucleotide reductase, all-alpha domain CFF04554_RS09120 PF02867 Ribonucleotide reductase, barrel domain CFF04554_RS09120 PF03477 ATP cone domain CFF04554_RS09125 PF00324 Amino acid permease CFF04554_RS09130 PF02075 Crossover junction endodeoxyribonuclease RuvC CFF04554_RS09140 PF00308 Bacterial dnaA protein CFF04554_RS09140 PF11638 DnaA N-terminal domain CFF04554_RS09180 PF13023 HD domain CFF04554_RS09300 PF02120 Flagellar hook-length control protein FliK CFF04554_RS09305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS09320 PF03432 CFF04554_RS09320 CFF04554_RS09340 PF00270 DEAD/DEAH box helicase CFF04554_RS09340 PF00271 Helicase conserved C-terminal domain CFF04554_RS09345 PF10119 CFF04554_RS09345 CFF04554_RS09345 PF13847 Methyltransferase domain CFF04554_RS09355 PF13449 Esterase-like activity of phytase CFF04554_RS09360 PF04883 CFF04554_RS09360 CFF04554_RS09365 PF09669 CFF04554_RS09365 CFF04554_RS09375 PF00717 Peptidase S24-like CFF04554_RS09375 PF01381 Helix-turn-helix CFF04554_RS09385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS09390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFF04554_RS09395 PF00106 short chain dehydrogenase CFF04554_RS09400 PF13561 Enoyl-(Acyl carrier protein) reductase CFF04554_RS09405 PF00535 Glycosyl transferase family 2 CFF04554_RS09410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain