locus-tag class description CHH_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CHH_RS00005 PF11638 DnaA N-terminal domain CHH_RS00005 PF00308 Bacterial dnaA protein CHH_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CHH_RS00010 PF02767 DNA polymerase III beta subunit, central domain CHH_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CHH_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS00015 PF01751 Toprim domain CHH_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CHH_RS00015 PF00204 DNA gyrase B CHH_RS00025 PF14489 QueF-like protein CHH_RS00045 PF09278 MerR, DNA binding CHH_RS00045 PF00376 MerR family regulatory protein CHH_RS00050 PF12323 Helix-turn-helix domain CHH_RS00050 PF01385 Probable transposase CHH_RS00050 PF07282 Putative transposase DNA-binding domain CHH_RS00055 PF00460 Flagella basal body rod protein CHH_RS00055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH_RS00055 PF07559 Flagellar basal body protein FlaE CHH_RS00060 PF03963 Flagellar hook capping protein - N-terminal region CHH_RS00070 PF03144 Elongation factor Tu domain 2 CHH_RS00070 PF00009 Elongation factor Tu GTP binding domain CHH_RS00070 PF00679 Elongation factor G C-terminus CHH_RS00085 PF01351 Ribonuclease HII CHH_RS00105 PF13439 Glycosyltransferase Family 4 CHH_RS00105 PF00534 Glycosyl transferases group 1 CHH_RS00110 PF00005 ABC transporter CHH_RS00110 PF08402 TOBE domain CHH_RS00115 PF00465 Iron-containing alcohol dehydrogenase CHH_RS00125 PF01209 ubiE/COQ5 methyltransferase family CHH_RS00130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CHH_RS00140 PF02348 Cytidylyltransferase CHH_RS00145 PF03102 NeuB family CHH_RS00145 PF08666 SAF domain CHH_RS00150 PF09940 Domain of unknown function (DUF2172) CHH_RS00150 PF16254 Domain of unknown function (DUF4910) CHH_RS00150 PF16221 winged helix-turn-helix CHH_RS00185 PF03328 HpcH/HpaI aldolase/citrate lyase family CHH_RS00190 PF02348 Cytidylyltransferase CHH_RS00200 PF00132 Bacterial transferase hexapeptide (six repeats) CHH_RS00205 PF01370 NAD dependent epimerase/dehydratase family CHH_RS00215 PF00132 Bacterial transferase hexapeptide (six repeats) CHH_RS00225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHH_RS00225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHH_RS00230 PF16363 GDP-mannose 4,6 dehydratase CHH_RS00250 PF00483 Nucleotidyl transferase CHH_RS00255 PF16363 GDP-mannose 4,6 dehydratase CHH_RS00265 PF16363 GDP-mannose 4,6 dehydratase CHH_RS00270 PF00535 Glycosyl transferase family 2 CHH_RS00275 PF13649 Methyltransferase domain CHH_RS00295 PF00535 Glycosyl transferase family 2 CHH_RS00300 PF00534 Glycosyl transferases group 1 CHH_RS00300 PF13439 Glycosyltransferase Family 4 CHH_RS00315 PF02397 Bacterial sugar transferase CHH_RS00335 PF04055 Radical SAM superfamily CHH_RS00340 PF07963 Prokaryotic N-terminal methylation motif CHH_RS00340 PF08334 Type II secretion system (T2SS), protein G CHH_RS00345 PF00268 Ribonucleotide reductase, small chain CHH_RS00350 PF00795 Carbon-nitrogen hydrolase CHH_RS00355 PF01926 50S ribosome-binding GTPase CHH_RS00355 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CHH_RS00360 PF06968 Biotin and Thiamin Synthesis associated domain CHH_RS00360 PF04055 Radical SAM superfamily CHH_RS00380 PF00037 4Fe-4S binding domain CHH_RS00380 PF02906 Iron only hydrogenase large subunit, C-terminal domain CHH_RS00390 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CHH_RS00390 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CHH_RS00395 PF00338 Ribosomal protein S10p/S20e CHH_RS00400 PF00297 Ribosomal protein L3 CHH_RS00405 PF00573 Ribosomal protein L4/L1 family CHH_RS00410 PF00276 Ribosomal protein L23 CHH_RS00415 PF03947 Ribosomal Proteins L2, C-terminal domain CHH_RS00415 PF00181 Ribosomal Proteins L2, RNA binding domain CHH_RS00420 PF00203 Ribosomal protein S19 CHH_RS00425 PF00237 Ribosomal protein L22p/L17e CHH_RS00430 PF00189 Ribosomal protein S3, C-terminal domain CHH_RS00430 PF07650 KH domain CHH_RS00435 PF00252 Ribosomal protein L16p/L10e CHH_RS00440 PF00831 Ribosomal L29 protein CHH_RS00445 PF00366 Ribosomal protein S17 CHH_RS00450 PF00238 Ribosomal protein L14p/L23e CHH_RS00455 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CHH_RS00455 PF00467 KOW motif CHH_RS00460 PF00673 ribosomal L5P family C-terminus CHH_RS00460 PF00281 Ribosomal protein L5 CHH_RS00465 PF00253 Ribosomal protein S14p/S29e CHH_RS00470 PF00410 Ribosomal protein S8 CHH_RS00475 PF00347 Ribosomal protein L6 CHH_RS00480 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CHH_RS00485 PF03719 Ribosomal protein S5, C-terminal domain CHH_RS00485 PF00333 Ribosomal protein S5, N-terminal domain CHH_RS00490 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CHH_RS00495 PF00344 SecY translocase CHH_RS00500 PF00557 Metallopeptidase family M24 CHH_RS00505 PF01176 Translation initiation factor 1A / IF-1 CHH_RS00510 PF00444 Ribosomal protein L36 CHH_RS00515 PF00416 Ribosomal protein S13/S18 CHH_RS00520 PF00411 Ribosomal protein S11 CHH_RS00525 PF01479 S4 domain CHH_RS00525 PF00163 Ribosomal protein S4/S9 N-terminal domain CHH_RS00530 PF01000 RNA polymerase Rpb3/RpoA insert domain CHH_RS00530 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CHH_RS00530 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CHH_RS00535 PF01196 Ribosomal protein L17 CHH_RS00540 PF01106 NifU-like domain CHH_RS00550 PF08245 Mur ligase middle domain CHH_RS00550 PF02875 Mur ligase family, glutamate ligase domain CHH_RS00555 PF02261 Aspartate decarboxylase CHH_RS00560 PF00672 HAMP domain CHH_RS00560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH_RS00560 PF17200 Single Cache domain 2 CHH_RS00565 PF02575 YbaB/EbfC DNA-binding family CHH_RS00575 PF00348 Polyprenyl synthetase CHH_RS00580 PF02779 Transketolase, pyrimidine binding domain CHH_RS00580 PF00456 Transketolase, thiamine diphosphate binding domain CHH_RS00580 PF02780 Transketolase, C-terminal domain CHH_RS00585 PF03167 Uracil DNA glycosylase superfamily CHH_RS00590 PF00453 Ribosomal protein L20 CHH_RS00595 PF01632 Ribosomal protein L35 CHH_RS00600 PF13416 Bacterial extracellular solute-binding protein CHH_RS00615 PF00873 AcrB/AcrD/AcrF family CHH_RS00620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHH_RS00620 PF00529 HlyD membrane-fusion protein of T1SS CHH_RS00625 PF00440 Bacterial regulatory proteins, tetR family CHH_RS00630 PF12801 4Fe-4S binding domain CHH_RS00630 PF13746 4Fe-4S dicluster domain CHH_RS00630 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CHH_RS00635 PF01165 Ribosomal protein S21 CHH_RS00650 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHH_RS00655 PF12838 4Fe-4S dicluster domain CHH_RS00660 PF00374 Nickel-dependent hydrogenase CHH_RS00660 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CHH_RS00660 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CHH_RS00665 PF00361 Proton-conducting membrane transporter CHH_RS00665 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CHH_RS00670 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CHH_RS00675 PF00146 NADH dehydrogenase CHH_RS00680 PF00361 Proton-conducting membrane transporter CHH_RS00685 PF13247 4Fe-4S dicluster domain CHH_RS00685 PF12800 4Fe-4S binding domain CHH_RS00690 PF00221 Aromatic amino acid lyase CHH_RS00700 PF00890 FAD binding domain CHH_RS00700 PF04205 FMN-binding domain CHH_RS00715 PF00512 His Kinase A (phospho-acceptor) domain CHH_RS00715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS00720 PF00072 Response regulator receiver domain CHH_RS00720 PF00486 Transcriptional regulatory protein, C terminal CHH_RS00730 PF01967 MoaC family CHH_RS00755 PF01435 Peptidase family M48 CHH_RS00760 PF05992 SbmA/BacA-like family CHH_RS00770 PF03605 Anaerobic c4-dicarboxylate membrane transporter CHH_RS00775 PF01595 Cyclin M transmembrane N-terminal domain CHH_RS00775 PF03471 Transporter associated domain CHH_RS00775 PF00571 CBS domain CHH_RS00805 PF01751 Toprim domain CHH_RS00805 PF01396 Topoisomerase DNA binding C4 zinc finger CHH_RS00805 PF01131 DNA topoisomerase CHH_RS00810 PF06968 Biotin and Thiamin Synthesis associated domain CHH_RS00810 PF04055 Radical SAM superfamily CHH_RS00815 PF00999 Sodium/hydrogen exchanger family CHH_RS00815 PF02254 TrkA-N domain CHH_RS00815 PF02080 TrkA-C domain CHH_RS00820 PF00285 Citrate synthase, C-terminal domain CHH_RS00825 PF00459 Inositol monophosphatase family CHH_RS00830 PF12849 PBP superfamily domain CHH_RS00835 PF00528 Binding-protein-dependent transport system inner membrane component CHH_RS00840 PF00528 Binding-protein-dependent transport system inner membrane component CHH_RS00845 PF00005 ABC transporter CHH_RS00855 PF07690 Major Facilitator Superfamily CHH_RS00860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH_RS00860 PF00672 HAMP domain CHH_RS00860 PF02743 Cache domain CHH_RS00865 PF00583 Acetyltransferase (GNAT) family CHH_RS00875 PF03453 MoeA N-terminal region (domain I and II) CHH_RS00875 PF03454 MoeA C-terminal region (domain IV) CHH_RS00875 PF00994 Probable molybdopterin binding domain CHH_RS00885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH_RS00885 PF00672 HAMP domain CHH_RS00885 PF02743 Cache domain CHH_RS00900 PF02391 MoaE protein CHH_RS00910 PF05670 NFACT protein RNA binding domain CHH_RS00915 PF00330 Aconitase family (aconitate hydratase) CHH_RS00920 PF12804 MobA-like NTP transferase domain CHH_RS00925 PF02253 Phospholipase A1 CHH_RS00940 PF03952 Enolase, N-terminal domain CHH_RS00940 PF00113 Enolase, C-terminal TIM barrel domain CHH_RS00945 PF00154 recA bacterial DNA recombination protein CHH_RS00950 PF02621 Menaquinone biosynthesis CHH_RS00960 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CHH_RS00985 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CHH_RS00985 PF13288 DXP reductoisomerase C-terminal domain CHH_RS00985 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CHH_RS00990 PF00860 Permease family CHH_RS01000 PF00814 Glycoprotease family CHH_RS01030 PF04055 Radical SAM superfamily CHH_RS01030 PF06463 Molybdenum Cofactor Synthesis C CHH_RS01040 PF00465 Iron-containing alcohol dehydrogenase CHH_RS01090 PF00578 AhpC/TSA family CHH_RS01090 PF10417 C-terminal domain of 1-Cys peroxiredoxin CHH_RS01095 PF17848 Acetyl-coA carboxylase zinc finger domain CHH_RS01095 PF01039 Carboxyl transferase domain CHH_RS01100 PF02590 Predicted SPOUT methyltransferase CHH_RS01115 PF01207 Dihydrouridine synthase (Dus) CHH_RS01130 PF00037 4Fe-4S binding domain CHH_RS01135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS01135 PF00512 His Kinase A (phospho-acceptor) domain CHH_RS01140 PF00072 Response regulator receiver domain CHH_RS01140 PF00486 Transcriptional regulatory protein, C terminal CHH_RS01150 PF02660 Glycerol-3-phosphate acyltransferase CHH_RS01160 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CHH_RS01160 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CHH_RS01165 PF02504 Fatty acid synthesis protein CHH_RS01170 PF01783 Ribosomal L32p protein family CHH_RS01180 PF00334 Nucleoside diphosphate kinase CHH_RS01185 PF00037 4Fe-4S binding domain CHH_RS01190 PF00691 OmpA family CHH_RS01190 PF13677 Membrane MotB of proton-channel complex MotA/MotB CHH_RS01195 PF01618 MotA/TolQ/ExbB proton channel family CHH_RS01200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CHH_RS01200 PF01367 5'-3' exonuclease, C-terminal SAM fold CHH_RS01200 PF01612 3'-5' exonuclease CHH_RS01200 PF00476 DNA polymerase family A CHH_RS01225 PF00266 Aminotransferase class-V CHH_RS01230 PF02601 Exonuclease VII, large subunit CHH_RS01230 PF13742 OB-fold nucleic acid binding domain CHH_RS01235 PF01209 ubiE/COQ5 methyltransferase family CHH_RS01245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHH_RS01250 PF00005 ABC transporter CHH_RS01270 PF02779 Transketolase, pyrimidine binding domain CHH_RS01270 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CHH_RS01270 PF02780 Transketolase, C-terminal domain CHH_RS01280 PF14841 FliG middle domain CHH_RS01280 PF01706 FliG C-terminal domain CHH_RS01280 PF14842 FliG N-terminal domain CHH_RS01285 PF01514 Secretory protein of YscJ/FliF family CHH_RS01285 PF08345 Flagellar M-ring protein C-terminal CHH_RS01290 PF00155 Aminotransferase class I and II CHH_RS01295 PF01817 Chorismate mutase type II CHH_RS01295 PF00800 Prephenate dehydratase CHH_RS01295 PF01842 ACT domain CHH_RS01305 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHH_RS01305 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CHH_RS01320 PF01725 Ham1 family CHH_RS01325 PF07715 TonB-dependent Receptor Plug Domain CHH_RS01325 PF00593 TonB dependent receptor CHH_RS01330 PF00296 Luciferase-like monooxygenase CHH_RS01335 PF01497 Periplasmic binding protein CHH_RS01340 PF01032 FecCD transport family CHH_RS01345 PF00005 ABC transporter CHH_RS01355 PF01618 MotA/TolQ/ExbB proton channel family CHH_RS01375 PF03435 Saccharopine dehydrogenase NADP binding domain CHH_RS01375 PF16653 Saccharopine dehydrogenase C-terminal domain CHH_RS01385 PF01197 Ribosomal protein L31 CHH_RS01390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CHH_RS01395 PF00588 SpoU rRNA Methylase family CHH_RS01395 PF08032 RNA 2'-O ribose methyltransferase substrate binding CHH_RS01410 PF00155 Aminotransferase class I and II CHH_RS01415 PF01842 ACT domain CHH_RS01415 PF00742 Homoserine dehydrogenase CHH_RS01415 PF03447 Homoserine dehydrogenase, NAD binding domain CHH_RS01420 PF02021 Uncharacterised protein family UPF0102 CHH_RS01425 PF00085 Thioredoxin CHH_RS01430 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH_RS01440 PF01113 Dihydrodipicolinate reductase, N-terminus CHH_RS01440 PF05173 Dihydrodipicolinate reductase, C-terminus CHH_RS01445 PF13537 Glutamine amidotransferase domain CHH_RS01445 PF00156 Phosphoribosyl transferase domain CHH_RS01460 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CHH_RS01460 PF01502 Phosphoribosyl-AMP cyclohydrolase CHH_RS01470 PF01063 Amino-transferase class IV CHH_RS01480 PF00578 AhpC/TSA family CHH_RS01490 PF02677 Epoxyqueuosine reductase QueH CHH_RS01515 PF00032 Cytochrome b(C-terminal)/b6/petD CHH_RS01515 PF00033 Cytochrome b/b6/petB CHH_RS01520 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CHH_RS01520 PF00355 Rieske [2Fe-2S] domain CHH_RS01525 PF01810 LysE type translocator CHH_RS01530 PF13932 GidA associated domain CHH_RS01530 PF01134 Glucose inhibited division protein A CHH_RS01540 PF01555 DNA methylase CHH_RS01550 PF01381 Helix-turn-helix CHH_RS01555 PF00884 Sulfatase CHH_RS01570 PF00677 Lumazine binding domain CHH_RS01575 PF02578 Multi-copper polyphenol oxidoreductase laccase CHH_RS01585 PF00318 Ribosomal protein S2 CHH_RS01590 PF00889 Elongation factor TS CHH_RS01595 PF00005 ABC transporter CHH_RS01600 PF01311 Bacterial export proteins, family 1 CHH_RS01610 PF00625 Guanylate kinase CHH_RS01615 PF02416 mttA/Hcf106 family CHH_RS01620 PF03485 Arginyl tRNA synthetase N terminal domain CHH_RS01620 PF05746 DALR anticodon binding domain CHH_RS01620 PF00750 tRNA synthetases class I (R) CHH_RS01625 PF03466 LysR substrate binding domain CHH_RS01625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH_RS01630 PF03601 Conserved hypothetical protein 698 CHH_RS01635 PF01467 Cytidylyltransferase-like CHH_RS01640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CHH_RS01640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CHH_RS01645 PF00162 Phosphoglycerate kinase CHH_RS01650 PF00121 Triosephosphate isomerase CHH_RS01670 PF12170 DNA polymerase III tau subunit V interacting with alpha CHH_RS01670 PF12169 DNA polymerase III subunits gamma and tau domain III CHH_RS01670 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CHH_RS01675 PF07498 Rho termination factor, N-terminal domain CHH_RS01675 PF07497 Rho termination factor, RNA-binding domain CHH_RS01675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH_RS01685 PF01867 CRISPR associated protein Cas1 CHH_RS01695 PF00248 Aldo/keto reductase family CHH_RS01700 PF00403 Heavy-metal-associated domain CHH_RS01720 PF08645 Polynucleotide kinase 3 phosphatase CHH_RS01725 PF01370 NAD dependent epimerase/dehydratase family CHH_RS01730 PF01467 Cytidylyltransferase-like CHH_RS01730 PF00294 pfkB family carbohydrate kinase CHH_RS01735 PF13580 SIS domain CHH_RS01740 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHH_RS01760 PF00534 Glycosyl transferases group 1 CHH_RS01760 PF13439 Glycosyltransferase Family 4 CHH_RS01765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHH_RS01780 PF01522 Polysaccharide deacetylase CHH_RS01785 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHH_RS01790 PF00535 Glycosyl transferase family 2 CHH_RS01810 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CHH_RS01810 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CHH_RS01810 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CHH_RS01815 PF01370 NAD dependent epimerase/dehydratase family CHH_RS01820 PF01068 ATP dependent DNA ligase domain CHH_RS01820 PF14743 DNA ligase OB-like domain CHH_RS01835 PF01370 NAD dependent epimerase/dehydratase family CHH_RS01840 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CHH_RS01840 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CHH_RS01840 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CHH_RS01845 PF01943 Polysaccharide biosynthesis protein CHH_RS01845 PF14667 Polysaccharide biosynthesis C-terminal domain CHH_RS01850 PF13439 Glycosyltransferase Family 4 CHH_RS01850 PF00534 Glycosyl transferases group 1 CHH_RS01860 PF13439 Glycosyltransferase Family 4 CHH_RS01860 PF00534 Glycosyl transferases group 1 CHH_RS01865 PF18527 STT3/PglB C-terminal beta-barrel domain CHH_RS01865 PF02516 Oligosaccharyl transferase STT3 subunit CHH_RS01870 PF13477 Glycosyl transferase 4-like CHH_RS01870 PF00534 Glycosyl transferases group 1 CHH_RS01875 PF02397 Bacterial sugar transferase CHH_RS01880 PF17836 PglD N-terminal domain CHH_RS01880 PF00132 Bacterial transferase hexapeptide (six repeats) CHH_RS01885 PF00483 Nucleotidyl transferase CHH_RS01890 PF00342 Phosphoglucose isomerase CHH_RS01895 PF00210 Ferritin-like domain CHH_RS01915 PF13649 Methyltransferase domain CHH_RS01920 PF04301 Protein of unknown function (DUF452) CHH_RS01920 PF08241 Methyltransferase domain CHH_RS01925 PF00155 Aminotransferase class I and II CHH_RS01935 PF02769 AIR synthase related protein, C-terminal domain CHH_RS01935 PF00586 AIR synthase related protein, N-terminal domain CHH_RS01940 PF01142 tRNA pseudouridine synthase D (TruD) CHH_RS01955 PF02561 Flagellar protein FliS CHH_RS01960 PF07196 Flagellin hook IN motif CHH_RS01960 PF07195 Flagellar hook-associated protein 2 C-terminus CHH_RS01960 PF02465 Flagellar hook-associated protein 2 N-terminus CHH_RS01980 PF02119 Flagellar P-ring protein CHH_RS02000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH_RS02000 PF07196 Flagellin hook IN motif CHH_RS02010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHH_RS02010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHH_RS02010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHH_RS02010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHH_RS02015 PF06508 Queuosine biosynthesis protein QueC CHH_RS02020 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHH_RS02025 PF02325 YGGT family CHH_RS02050 PF00258 Flavodoxin CHH_RS02055 PF03222 Tryptophan/tyrosine permease family CHH_RS02060 PF01709 Transcriptional regulator CHH_RS02065 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CHH_RS02070 PF00375 Sodium:dicarboxylate symporter family CHH_RS02075 PF13545 Crp-like helix-turn-helix domain CHH_RS02075 PF00027 Cyclic nucleotide-binding domain CHH_RS02090 PF00376 MerR family regulatory protein CHH_RS02090 PF09278 MerR, DNA binding CHH_RS02095 PF01385 Probable transposase CHH_RS02095 PF07282 Putative transposase DNA-binding domain CHH_RS02095 PF12323 Helix-turn-helix domain CHH_RS02105 PF01323 DSBA-like thioredoxin domain CHH_RS02110 PF02600 Disulfide bond formation protein DsbB CHH_RS02145 PF00403 Heavy-metal-associated domain CHH_RS02155 PF01790 Prolipoprotein diacylglyceryl transferase CHH_RS02160 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CHH_RS02165 PF00890 FAD binding domain CHH_RS02165 PF02910 Fumarate reductase flavoprotein C-term CHH_RS02170 PF13085 2Fe-2S iron-sulfur cluster binding domain CHH_RS02170 PF13183 4Fe-4S dicluster domain CHH_RS02185 PF02664 S-Ribosylhomocysteinase (LuxS) CHH_RS02190 PF00361 Proton-conducting membrane transporter CHH_RS02195 PF00361 Proton-conducting membrane transporter CHH_RS02200 PF00361 Proton-conducting membrane transporter CHH_RS02200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CHH_RS02205 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CHH_RS02210 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CHH_RS02215 PF12838 4Fe-4S dicluster domain CHH_RS02220 PF00146 NADH dehydrogenase CHH_RS02225 PF00384 Molybdopterin oxidoreductase CHH_RS02225 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CHH_RS02225 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CHH_RS02230 PF10531 SLBB domain CHH_RS02230 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CHH_RS02230 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CHH_RS02240 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CHH_RS02240 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CHH_RS02245 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHH_RS02250 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CHH_RS02255 PF00350 Dynamin family CHH_RS02260 PF00350 Dynamin family CHH_RS02270 PF18793 Nitrous oxide reductase propeller repeat 2 CHH_RS02270 PF18764 Nitrous oxide reductase propeller repeat CHH_RS02270 PF13473 Cupredoxin-like domain CHH_RS02285 PF12838 4Fe-4S dicluster domain CHH_RS02285 PF12800 4Fe-4S binding domain CHH_RS02300 PF12801 4Fe-4S binding domain CHH_RS02300 PF13237 4Fe-4S dicluster domain CHH_RS02305 PF00005 ABC transporter CHH_RS02305 PF08402 TOBE domain CHH_RS02325 PF03061 Thioesterase superfamily CHH_RS02345 PF00909 Ammonium Transporter Family CHH_RS02350 PF00543 Nitrogen regulatory protein P-II CHH_RS02355 PF00468 Ribosomal protein L34 CHH_RS02360 PF00825 Ribonuclease P CHH_RS02365 PF01809 Putative membrane protein insertion efficiency factor CHH_RS02370 PF02096 60Kd inner membrane protein CHH_RS02370 PF14849 YidC periplasmic domain CHH_RS02380 PF01926 50S ribosome-binding GTPase CHH_RS02380 PF10396 GTP-binding protein TrmE N-terminus CHH_RS02380 PF12631 MnmE helical domain CHH_RS02385 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CHH_RS02385 PF02769 AIR synthase related protein, C-terminal domain CHH_RS02385 PF00586 AIR synthase related protein, N-terminal domain CHH_RS02390 PF00226 DnaJ domain CHH_RS02390 PF05099 Tellurite resistance protein TerB CHH_RS02395 PF01808 AICARFT/IMPCHase bienzyme CHH_RS02395 PF02142 MGS-like domain CHH_RS02410 PF01883 Iron-sulfur cluster assembly protein CHH_RS02415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH_RS02415 PF00672 HAMP domain CHH_RS02415 PF02743 Cache domain CHH_RS02420 PF01063 Amino-transferase class IV CHH_RS02440 PF01795 MraW methylase family CHH_RS02455 PF02491 SHS2 domain inserted in FTSA CHH_RS02460 PF00091 Tubulin/FtsZ family, GTPase domain CHH_RS02460 PF12327 FtsZ family, C-terminal domain CHH_RS02470 PF05970 PIF1-like helicase CHH_RS02470 PF02689 Helicase CHH_RS02480 PF03548 Outer membrane lipoprotein carrier protein LolA CHH_RS02485 PF07517 SecA DEAD-like domain CHH_RS02485 PF02810 SEC-C motif CHH_RS02485 PF07516 SecA Wing and Scaffold domain CHH_RS02485 PF01043 SecA preprotein cross-linking domain CHH_RS02490 PF12704 MacB-like periplasmic core domain CHH_RS02490 PF02687 FtsX-like permease family CHH_RS02515 PF00860 Permease family CHH_RS02520 PF04055 Radical SAM superfamily CHH_RS02525 PF01966 HD domain CHH_RS02525 PF08335 GlnD PII-uridylyltransferase CHH_RS02525 PF03445 Putative nucleotidyltransferase DUF294 CHH_RS02530 PF01380 SIS domain CHH_RS02540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS02540 PF00512 His Kinase A (phospho-acceptor) domain CHH_RS02540 PF00989 PAS fold CHH_RS02540 PF11808 Phosphate regulon sensor protein PhoR CHH_RS02545 PF00072 Response regulator receiver domain CHH_RS02545 PF00486 Transcriptional regulatory protein, C terminal CHH_RS02550 PF03916 Polysulphide reductase, NrfD CHH_RS02555 PF13247 4Fe-4S dicluster domain CHH_RS02560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHH_RS02560 PF10518 TAT (twin-arginine translocation) pathway signal sequence CHH_RS02560 PF01568 Molydopterin dinucleotide binding domain CHH_RS02560 PF00384 Molybdopterin oxidoreductase CHH_RS02565 PF04143 Sulphur transport CHH_RS02570 PF01206 Sulfurtransferase TusA CHH_RS02575 PF01177 Asp/Glu/Hydantoin racemase CHH_RS02580 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CHH_RS02655 PF00072 Response regulator receiver domain CHH_RS02655 PF00990 Diguanylate cyclase, GGDEF domain CHH_RS02660 PF02040 Arsenical pump membrane protein CHH_RS02670 PF02464 Competence-damaged protein CHH_RS02670 PF00994 Probable molybdopterin binding domain CHH_RS02680 PF08264 Anticodon-binding domain of tRNA CHH_RS02680 PF00133 tRNA synthetases class I (I, L, M and V) CHH_RS02685 PF01425 Amidase CHH_RS02690 PF00571 CBS domain CHH_RS02690 PF00478 IMP dehydrogenase / GMP reductase domain CHH_RS02695 PF00561 alpha/beta hydrolase fold CHH_RS02710 PF02630 SCO1/SenC CHH_RS02715 PF01098 Cell cycle protein CHH_RS02720 PF00849 RNA pseudouridylate synthase CHH_RS02720 PF01479 S4 domain CHH_RS02730 PF02390 Putative methyltransferase CHH_RS02735 PF09383 NIL domain CHH_RS02735 PF00005 ABC transporter CHH_RS02750 PF00696 Amino acid kinase family CHH_RS02755 PF01192 RNA polymerase Rpb6 CHH_RS02760 PF13291 ACT domain CHH_RS02760 PF02824 TGS domain CHH_RS02760 PF04607 Region found in RelA / SpoT proteins CHH_RS02765 PF00579 tRNA synthetases class I (W and Y) CHH_RS02775 PF01520 N-acetylmuramoyl-L-alanine amidase CHH_RS02780 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CHH_RS02780 PF01266 FAD dependent oxidoreductase CHH_RS02790 PF13302 Acetyltransferase (GNAT) domain CHH_RS02790 PF03352 Methyladenine glycosylase CHH_RS02790 PF13673 Acetyltransferase (GNAT) domain CHH_RS02790 PF00958 GMP synthase C terminal domain CHH_RS02790 PF00117 Glutamine amidotransferase class-I CHH_RS02795 PF00719 Inorganic pyrophosphatase CHH_RS02805 PF02938 GAD domain CHH_RS02805 PF01336 OB-fold nucleic acid binding domain CHH_RS02805 PF00152 tRNA synthetases class II (D, K and N) CHH_RS02810 PF01513 ATP-NAD kinase CHH_RS02815 PF13476 AAA domain CHH_RS02820 PF00990 Diguanylate cyclase, GGDEF domain CHH_RS02820 PF00072 Response regulator receiver domain CHH_RS02825 PF01026 TatD related DNase CHH_RS02835 PF03330 Lytic transglycolase CHH_RS02835 PF05036 Sporulation related domain CHH_RS02840 PF00475 Imidazoleglycerol-phosphate dehydratase CHH_RS02860 PF01926 50S ribosome-binding GTPase CHH_RS02875 PF03717 Penicillin-binding Protein dimerisation domain CHH_RS02875 PF00905 Penicillin binding protein transpeptidase domain CHH_RS02880 PF01312 FlhB HrpN YscU SpaS Family CHH_RS02905 PF00202 Aminotransferase class-III CHH_RS02915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CHH_RS02915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CHH_RS02920 PF10502 Signal peptidase, peptidase S26 CHH_RS02925 PF02163 Peptidase family M50 CHH_RS02930 PF02502 Ribose/Galactose Isomerase CHH_RS02940 PF00156 Phosphoribosyl transferase domain CHH_RS02950 PF00883 Cytosol aminopeptidase family, catalytic domain CHH_RS02955 PF06071 Protein of unknown function (DUF933) CHH_RS02955 PF01926 50S ribosome-binding GTPase CHH_RS02960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHH_RS02960 PF00384 Molybdopterin oxidoreductase CHH_RS02960 PF01568 Molydopterin dinucleotide binding domain CHH_RS02965 PF12800 4Fe-4S binding domain CHH_RS02965 PF12838 4Fe-4S dicluster domain CHH_RS02970 PF12837 4Fe-4S binding domain CHH_RS02970 PF12801 4Fe-4S binding domain CHH_RS02975 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CHH_RS02995 PF02666 Phosphatidylserine decarboxylase CHH_RS03000 PF00149 Calcineurin-like phosphoesterase CHH_RS03005 PF05525 Branched-chain amino acid transport protein CHH_RS03010 PF01634 ATP phosphoribosyltransferase CHH_RS03015 PF03309 Type III pantothenate kinase CHH_RS03025 PF15437 Plasminogen-binding protein pgbA C-terminal CHH_RS03035 PF02686 Glu-tRNAGln amidotransferase C subunit CHH_RS03040 PF00437 Type II/IV secretion system protein CHH_RS03050 PF01475 Ferric uptake regulator family CHH_RS03055 PF00152 tRNA synthetases class II (D, K and N) CHH_RS03055 PF01336 OB-fold nucleic acid binding domain CHH_RS03060 PF00464 Serine hydroxymethyltransferase CHH_RS03075 PF08501 Shikimate dehydrogenase substrate binding domain CHH_RS03080 PF02132 RecR protein CHH_RS03080 PF13662 Toprim domain CHH_RS03090 PF00072 Response regulator receiver domain CHH_RS03090 PF00486 Transcriptional regulatory protein, C terminal CHH_RS03095 PF00226 DnaJ domain CHH_RS03095 PF01556 DnaJ C terminal domain CHH_RS03095 PF00684 DnaJ central domain CHH_RS03100 PF01084 Ribosomal protein S18 CHH_RS03105 PF00436 Single-strand binding protein family CHH_RS03110 PF01250 Ribosomal protein S6 CHH_RS03120 PF00773 RNB domain CHH_RS03130 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CHH_RS03130 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CHH_RS03135 PF04748 Divergent polysaccharide deacetylase CHH_RS03140 PF02481 DNA recombination-mediator protein A CHH_RS03140 PF18255 DNA processing protein A sterile alpha motif domain CHH_RS03145 PF03652 Holliday junction resolvase CHH_RS03150 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CHH_RS03150 PF01189 16S rRNA methyltransferase RsmB/F CHH_RS03150 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CHH_RS03160 PF02547 Queuosine biosynthesis protein CHH_RS03165 PF00902 Sec-independent protein translocase protein (TatC) CHH_RS03170 PF02416 mttA/Hcf106 family CHH_RS03175 PF06969 HemN C-terminal domain CHH_RS03175 PF04055 Radical SAM superfamily CHH_RS03180 PF00293 NUDIX domain CHH_RS03185 PF13840 ACT domain CHH_RS03185 PF01842 ACT domain CHH_RS03185 PF00696 Amino acid kinase family CHH_RS03200 PF00809 Pterin binding enzyme CHH_RS03205 PF03120 NAD-dependent DNA ligase OB-fold domain CHH_RS03205 PF01653 NAD-dependent DNA ligase adenylation domain CHH_RS03205 PF12826 Helix-hairpin-helix motif CHH_RS03205 PF00533 BRCA1 C Terminus (BRCT) domain CHH_RS03210 PF01728 FtsJ-like methyltransferase CHH_RS03210 PF01479 S4 domain CHH_RS03215 PF06574 FAD synthetase CHH_RS03215 PF01687 Riboflavin kinase CHH_RS03220 PF13847 Methyltransferase domain CHH_RS03230 PF01063 Amino-transferase class IV CHH_RS03235 PF04715 Anthranilate synthase component I, N terminal region CHH_RS03235 PF00425 chorismate binding enzyme CHH_RS03240 PF00312 Ribosomal protein S15 CHH_RS03245 PF02082 Transcriptional regulator CHH_RS03250 PF00771 FHIPEP family CHH_RS03280 PF01025 GrpE CHH_RS03285 PF00012 Hsp70 protein CHH_RS03295 PF03976 Polyphosphate kinase 2 (PPK2) CHH_RS03300 PF02683 Cytochrome C biogenesis protein transmembrane region CHH_RS03300 PF00085 Thioredoxin CHH_RS03300 PF11412 Disulphide bond corrector protein DsbC CHH_RS03305 PF00990 Diguanylate cyclase, GGDEF domain CHH_RS03310 PF00990 Diguanylate cyclase, GGDEF domain CHH_RS03325 PF02348 Cytidylyltransferase CHH_RS03330 PF00291 Pyridoxal-phosphate dependent enzyme CHH_RS03335 PF00696 Amino acid kinase family CHH_RS03340 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CHH_RS03345 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CHH_RS03350 PF02540 NAD synthase CHH_RS03355 PF00753 Metallo-beta-lactamase superfamily CHH_RS03365 PF08003 Protein of unknown function (DUF1698) CHH_RS03370 PF01546 Peptidase family M20/M25/M40 CHH_RS03370 PF07687 Peptidase dimerisation domain CHH_RS03375 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CHH_RS03375 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CHH_RS03395 PF02623 FliW protein CHH_RS03400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHH_RS03405 PF00005 ABC transporter CHH_RS03405 PF12704 MacB-like periplasmic core domain CHH_RS03405 PF02687 FtsX-like permease family CHH_RS03410 PF02321 Outer membrane efflux protein CHH_RS03425 PF00486 Transcriptional regulatory protein, C terminal CHH_RS03425 PF00072 Response regulator receiver domain CHH_RS03430 PF17820 PDZ domain CHH_RS03430 PF13180 PDZ domain CHH_RS03435 PF01556 DnaJ C terminal domain CHH_RS03435 PF00226 DnaJ domain CHH_RS03440 PF13411 MerR HTH family regulatory protein CHH_RS03445 PF00999 Sodium/hydrogen exchanger family CHH_RS03445 PF02254 TrkA-N domain CHH_RS03450 PF03471 Transporter associated domain CHH_RS03450 PF00999 Sodium/hydrogen exchanger family CHH_RS03450 PF02080 TrkA-C domain CHH_RS03455 PF01925 Sulfite exporter TauE/SafE CHH_RS03460 PF00119 ATP synthase A chain CHH_RS03465 PF02581 Thiamine monophosphate synthase CHH_RS03470 PF02637 GatB domain CHH_RS03470 PF02934 GatB/GatE catalytic domain CHH_RS03475 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CHH_RS03475 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CHH_RS03480 PF00933 Glycosyl hydrolase family 3 N terminal domain CHH_RS03490 PF00892 EamA-like transporter family CHH_RS03495 PF00005 ABC transporter CHH_RS03500 PF00528 Binding-protein-dependent transport system inner membrane component CHH_RS03505 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH_RS03510 PF01066 CDP-alcohol phosphatidyltransferase CHH_RS03520 PF00701 Dihydrodipicolinate synthetase family CHH_RS03525 PF05193 Peptidase M16 inactive domain CHH_RS03525 PF00675 Insulinase (Peptidase family M16) CHH_RS03530 PF01180 Dihydroorotate dehydrogenase CHH_RS03535 PF00664 ABC transporter transmembrane region CHH_RS03535 PF00005 ABC transporter CHH_RS03540 PF01406 tRNA synthetases class I (C) catalytic domain CHH_RS03540 PF09190 DALR domain CHH_RS03545 PF03023 Lipid II flippase MurJ CHH_RS03550 PF00270 DEAD/DEAH box helicase CHH_RS03550 PF00271 Helicase conserved C-terminal domain CHH_RS03565 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CHH_RS03575 PF09334 tRNA synthetases class I (M) CHH_RS03575 PF01588 Putative tRNA binding domain CHH_RS03575 PF00133 tRNA synthetases class I (I, L, M and V) CHH_RS03630 PF04055 Radical SAM superfamily CHH_RS03645 PF01739 CheR methyltransferase, SAM binding domain CHH_RS03650 PF00072 Response regulator receiver domain CHH_RS03650 PF01339 CheB methylesterase CHH_RS03660 PF01330 RuvA N terminal domain CHH_RS03660 PF07499 RuvA, C-terminal domain CHH_RS03665 PF07478 D-ala D-ala ligase C-terminus CHH_RS03665 PF01820 D-ala D-ala ligase N-terminus CHH_RS03680 PF08245 Mur ligase middle domain CHH_RS03680 PF02875 Mur ligase family, glutamate ligase domain CHH_RS03695 PF00871 Acetokinase family CHH_RS03700 PF01515 Phosphate acetyl/butaryl transferase CHH_RS03705 PF02107 Flagellar L-ring protein CHH_RS03710 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHH_RS03710 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHH_RS03710 PF00205 Thiamine pyrophosphate enzyme, central domain CHH_RS03715 PF10369 Small subunit of acetolactate synthase CHH_RS03720 PF00132 Bacterial transferase hexapeptide (six repeats) CHH_RS03720 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CHH_RS03725 PF09335 SNARE associated Golgi protein CHH_RS03730 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CHH_RS03730 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CHH_RS03735 PF02445 Quinolinate synthetase A protein CHH_RS03740 PF08447 PAS fold CHH_RS03740 PF08448 PAS fold CHH_RS03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS03750 PF00072 Response regulator receiver domain CHH_RS03750 PF00486 Transcriptional regulatory protein, C terminal CHH_RS03760 PF01568 Molydopterin dinucleotide binding domain CHH_RS03760 PF18364 Molybdopterin oxidoreductase N-terminal domain CHH_RS03760 PF00384 Molybdopterin oxidoreductase CHH_RS03775 PF00551 Formyl transferase CHH_RS03775 PF01842 ACT domain CHH_RS03780 PF00588 SpoU rRNA Methylase family CHH_RS03790 PF02092 Glycyl-tRNA synthetase beta subunit CHH_RS03795 PF02086 D12 class N6 adenine-specific DNA methyltransferase CHH_RS03870 PF00486 Transcriptional regulatory protein, C terminal CHH_RS03870 PF00072 Response regulator receiver domain CHH_RS03875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS03880 PF03458 UPF0126 domain CHH_RS03885 PF00202 Aminotransferase class-III CHH_RS03890 PF01557 Fumarylacetoacetate (FAA) hydrolase family CHH_RS03895 PF03748 Flagellar basal body-associated protein FliL CHH_RS03900 PF01648 4'-phosphopantetheinyl transferase superfamily CHH_RS03905 PF00291 Pyridoxal-phosphate dependent enzyme CHH_RS03915 PF01053 Cys/Met metabolism PLP-dependent enzyme CHH_RS03920 PF03063 Prismane/CO dehydrogenase family CHH_RS03925 PF00171 Aldehyde dehydrogenase family CHH_RS03940 PF01960 ArgJ family CHH_RS03975 PF00830 Ribosomal L28 family CHH_RS03980 PF03180 NLPA lipoprotein CHH_RS03985 PF08543 Phosphomethylpyrimidine kinase CHH_RS03990 PF00528 Binding-protein-dependent transport system inner membrane component CHH_RS03995 PF00005 ABC transporter CHH_RS03995 PF09383 NIL domain CHH_RS04010 PF08264 Anticodon-binding domain of tRNA CHH_RS04010 PF00133 tRNA synthetases class I (I, L, M and V) CHH_RS04010 PF10458 Valyl tRNA synthetase tRNA binding arm CHH_RS04015 PF10415 Fumarase C C-terminus CHH_RS04015 PF00206 Lyase CHH_RS04030 PF00580 UvrD/REP helicase N-terminal domain CHH_RS04030 PF13361 UvrD-like helicase C-terminal domain CHH_RS04035 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CHH_RS04035 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CHH_RS04060 PF00183 Hsp90 protein CHH_RS04070 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ CHH_RS04120 PF00589 Phage integrase family CHH_RS04120 PF13356 Arm DNA-binding domain CHH_RS04140 PF00171 Aldehyde dehydrogenase family CHH_RS04145 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH_RS04155 PF05175 Methyltransferase small domain CHH_RS04160 PF03692 Putative zinc- or iron-chelating domain CHH_RS04170 PF00218 Indole-3-glycerol phosphate synthase CHH_RS04180 PF03883 Peroxide stress protein YaaA CHH_RS04185 PF00216 Bacterial DNA-binding protein CHH_RS04195 PF07690 Major Facilitator Superfamily CHH_RS04205 PF02785 Biotin carboxylase C-terminal domain CHH_RS04205 PF00289 Biotin carboxylase, N-terminal domain CHH_RS04205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHH_RS04215 PF04376 Arginine-tRNA-protein transferase, N terminus CHH_RS04215 PF04377 Arginine-tRNA-protein transferase, C terminus CHH_RS04225 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CHH_RS04230 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CHH_RS04235 PF01384 Phosphate transporter family CHH_RS04240 PF00700 Bacterial flagellin C-terminal helical region CHH_RS04240 PF00669 Bacterial flagellin N-terminal helical region CHH_RS04245 PF09397 Ftsk gamma domain CHH_RS04245 PF17854 FtsK alpha domain CHH_RS04245 PF01580 FtsK/SpoIIIE family CHH_RS04260 PF00348 Polyprenyl synthetase CHH_RS04265 PF01488 Shikimate / quinate 5-dehydrogenase CHH_RS04265 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CHH_RS04265 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CHH_RS04270 PF04073 Aminoacyl-tRNA editing domain CHH_RS04270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHH_RS04270 PF03129 Anticodon binding domain CHH_RS04280 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CHH_RS04280 PF03900 Porphobilinogen deaminase, C-terminal domain CHH_RS04290 PF03062 MBOAT, membrane-bound O-acyltransferase family CHH_RS04295 PF03631 Virulence factor BrkB CHH_RS04300 PF01565 FAD binding domain CHH_RS04300 PF02913 FAD linked oxidases, C-terminal domain CHH_RS04310 PF04225 Opacity-associated protein A LysM-like domain CHH_RS04310 PF01551 Peptidase family M23 CHH_RS04315 PF03448 MgtE intracellular N domain CHH_RS04315 PF01769 Divalent cation transporter CHH_RS04315 PF00571 CBS domain CHH_RS04320 PF00293 NUDIX domain CHH_RS04330 PF00166 Chaperonin 10 Kd subunit CHH_RS04335 PF00118 TCP-1/cpn60 chaperonin family CHH_RS04340 PF02646 RmuC family CHH_RS04345 PF17763 Glutaminase/Asparaginase C-terminal domain CHH_RS04345 PF00710 Asparaginase, N-terminal CHH_RS04365 PF00694 Aconitase C-terminal domain CHH_RS04370 PF00180 Isocitrate/isopropylmalate dehydrogenase CHH_RS04385 PF01743 Poly A polymerase head domain CHH_RS04385 PF12627 Probable RNA and SrmB- binding site of polymerase A CHH_RS04385 PF01966 HD domain CHH_RS04390 PF02541 Ppx/GppA phosphatase family CHH_RS04395 PF09424 Yqey-like protein CHH_RS04405 PF00482 Type II secretion system (T2SS), protein F CHH_RS04410 PF00437 Type II/IV secretion system protein CHH_RS04425 PF00263 Bacterial type II and III secretion system protein CHH_RS04425 PF03958 Bacterial type II/III secretion system short domain CHH_RS04450 PF07650 KH domain CHH_RS04450 PF01926 50S ribosome-binding GTPase CHH_RS04455 PF07724 AAA domain (Cdc48 subfamily) CHH_RS04455 PF10431 C-terminal, D2-small domain, of ClpB protein CHH_RS04460 PF00227 Proteasome subunit CHH_RS04465 PF01281 Ribosomal protein L9, N-terminal domain CHH_RS04465 PF03948 Ribosomal protein L9, C-terminal domain CHH_RS04470 PF00925 GTP cyclohydrolase II CHH_RS04470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CHH_RS04475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHH_RS04475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CHH_RS04480 PF11791 Aconitate B N-terminal domain CHH_RS04480 PF06434 Aconitate hydratase 2 N-terminus CHH_RS04480 PF00330 Aconitase family (aconitate hydratase) CHH_RS04485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CHH_RS04485 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CHH_RS04485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CHH_RS04500 PF04551 GcpE protein CHH_RS04505 PF00772 DnaB-like helicase N terminal domain CHH_RS04505 PF03796 DnaB-like helicase C terminal domain CHH_RS04515 PF01702 Queuine tRNA-ribosyltransferase CHH_RS04530 PF00106 short chain dehydrogenase CHH_RS04535 PF05958 tRNA (Uracil-5-)-methyltransferase CHH_RS04550 PF13419 Haloacid dehalogenase-like hydrolase CHH_RS04555 PF03971 Monomeric isocitrate dehydrogenase CHH_RS04560 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CHH_RS04560 PF00056 lactate/malate dehydrogenase, NAD binding domain CHH_RS04570 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CHH_RS04570 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CHH_RS04570 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CHH_RS04575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHH_RS04575 PF00205 Thiamine pyrophosphate enzyme, central domain CHH_RS04575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHH_RS04585 PF00258 Flavodoxin CHH_RS04595 PF01168 Alanine racemase, N-terminal domain CHH_RS04600 PF02163 Peptidase family M50 CHH_RS04600 PF17820 PDZ domain CHH_RS04605 PF00834 Ribulose-phosphate 3 epimerase family CHH_RS04610 PF07733 Bacterial DNA polymerase III alpha NTPase domain CHH_RS04610 PF01336 OB-fold nucleic acid binding domain CHH_RS04610 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CHH_RS04610 PF14579 Helix-hairpin-helix motif CHH_RS04610 PF02811 PHP domain CHH_RS04610 PF00929 Exonuclease CHH_RS04610 PF11490 DNA polymerase III polC-type N-terminus II CHH_RS04615 PF18074 Primosomal protein N C-terminal domain CHH_RS04615 PF00270 DEAD/DEAH box helicase CHH_RS04615 PF00271 Helicase conserved C-terminal domain CHH_RS04615 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CHH_RS04620 PF08334 Type II secretion system (T2SS), protein G CHH_RS04620 PF07963 Prokaryotic N-terminal methylation motif CHH_RS04625 PF08334 Type II secretion system (T2SS), protein G CHH_RS04625 PF07963 Prokaryotic N-terminal methylation motif CHH_RS04645 PF00672 HAMP domain CHH_RS04645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH_RS04645 PF13426 PAS domain CHH_RS04650 PF00271 Helicase conserved C-terminal domain CHH_RS04650 PF02151 UvrB/uvrC motif CHH_RS04650 PF12344 Ultra-violet resistance protein B CHH_RS04650 PF04851 Type III restriction enzyme, res subunit CHH_RS04650 PF17757 UvrB interaction domain CHH_RS04655 PF00939 Sodium:sulfate symporter transmembrane region CHH_RS04665 PF13089 Polyphosphate kinase N-terminal domain CHH_RS04665 PF13090 Polyphosphate kinase C-terminal domain 2 CHH_RS04665 PF17941 Polyphosphate kinase C-terminal domain 1 CHH_RS04665 PF02503 Polyphosphate kinase middle domain CHH_RS04670 PF08267 Cobalamin-independent synthase, N-terminal domain CHH_RS04670 PF01717 Cobalamin-independent synthase, Catalytic domain CHH_RS04685 PF04305 Protein of unknown function (DUF455) CHH_RS04700 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CHH_RS04705 PF03453 MoeA N-terminal region (domain I and II) CHH_RS04705 PF03454 MoeA C-terminal region (domain IV) CHH_RS04705 PF00994 Probable molybdopterin binding domain CHH_RS04720 PF01467 Cytidylyltransferase-like CHH_RS04725 PF02223 Thymidylate kinase CHH_RS04730 PF13393 Histidyl-tRNA synthetase CHH_RS04730 PF03129 Anticodon binding domain CHH_RS04735 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHH_RS04735 PF17810 Arginine decarboxylase helical bundle domain CHH_RS04735 PF17944 Arginine decarboxylase C-terminal helical extension CHH_RS04740 PF06426 Serine acetyltransferase, N-terminal CHH_RS04740 PF00132 Bacterial transferase hexapeptide (six repeats) CHH_RS04745 PF00155 Aminotransferase class I and II CHH_RS04750 PF01501 Glycosyl transferase family 8 CHH_RS04750 PF00535 Glycosyl transferase family 2 CHH_RS04755 PF00994 Probable molybdopterin binding domain CHH_RS04760 PF17862 AAA+ lid domain CHH_RS04760 PF00004 ATPase family associated with various cellular activities (AAA) CHH_RS04760 PF01434 Peptidase family M41 CHH_RS04765 PF00919 Uncharacterized protein family UPF0004 CHH_RS04765 PF04055 Radical SAM superfamily CHH_RS04775 PF01761 3-dehydroquinate synthase CHH_RS04780 PF00309 Sigma-54 factor, Activator interacting domain (AID) CHH_RS04780 PF04963 Sigma-54 factor, core binding domain CHH_RS04780 PF04552 Sigma-54, DNA binding domain CHH_RS04785 PF00005 ABC transporter CHH_RS04785 PF12399 Branched-chain amino acid ATP-binding cassette transporter CHH_RS04795 PF01479 S4 domain CHH_RS04800 PF00216 Bacterial DNA-binding protein CHH_RS04805 PF03033 Glycosyltransferase family 28 N-terminal domain CHH_RS04805 PF04101 Glycosyltransferase family 28 C-terminal domain CHH_RS04810 PF01098 Cell cycle protein CHH_RS04815 PF18644 Phage integrase SAM-like domain CHH_RS04815 PF00589 Phage integrase family CHH_RS04820 PF00764 Arginosuccinate synthase CHH_RS04830 PF02618 YceG-like family CHH_RS04840 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CHH_RS04845 PF00586 AIR synthase related protein, N-terminal domain CHH_RS04845 PF02769 AIR synthase related protein, C-terminal domain CHH_RS04850 PF01924 Hydrogenase formation hypA family CHH_RS04855 PF01455 HupF/HypC family CHH_RS04860 PF03741 Integral membrane protein TerC family CHH_RS04865 PF02342 TerD domain CHH_RS04870 PF02342 TerD domain CHH_RS04885 PF02492 CobW/HypB/UreG, nucleotide-binding domain CHH_RS04890 PF08753 NikR C terminal nickel binding domain CHH_RS04890 PF01402 Ribbon-helix-helix protein, copG family CHH_RS04895 PF00708 Acylphosphatase CHH_RS04895 PF01300 Telomere recombination CHH_RS04895 PF07503 HypF finger CHH_RS04895 PF17788 HypF Kae1-like domain CHH_RS04905 PF01750 Hydrogenase maturation protease CHH_RS04910 PF01292 Prokaryotic cytochrome b561 CHH_RS04915 PF00374 Nickel-dependent hydrogenase CHH_RS04920 PF10518 TAT (twin-arginine translocation) pathway signal sequence CHH_RS04920 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHH_RS04920 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CHH_RS04930 PF03591 AzlC protein CHH_RS04935 PF00072 Response regulator receiver domain CHH_RS04935 PF00486 Transcriptional regulatory protein, C terminal CHH_RS04940 PF00512 His Kinase A (phospho-acceptor) domain CHH_RS04940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS04940 PF02743 Cache domain CHH_RS04950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHH_RS04950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CHH_RS04955 PF13247 4Fe-4S dicluster domain CHH_RS04960 PF03916 Polysulphide reductase, NrfD CHH_RS04965 PF01578 Cytochrome C assembly protein CHH_RS04965 PF05140 ResB-like family CHH_RS04975 PF05573 NosL CHH_RS04990 PF00005 ABC transporter CHH_RS05005 PF07724 AAA domain (Cdc48 subfamily) CHH_RS05005 PF10431 C-terminal, D2-small domain, of ClpB protein CHH_RS05005 PF02861 Clp amino terminal domain, pathogenicity island component CHH_RS05005 PF00004 ATPase family associated with various cellular activities (AAA) CHH_RS05005 PF17871 AAA lid domain CHH_RS05020 PF00005 ABC transporter CHH_RS05025 PF07715 TonB-dependent Receptor Plug Domain CHH_RS05030 PF03572 Peptidase family S41 CHH_RS05030 PF13180 PDZ domain CHH_RS05035 PF01259 SAICAR synthetase CHH_RS05040 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CHH_RS05055 PF01553 Acyltransferase CHH_RS05060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CHH_RS05085 PF03498 Cytolethal distending toxin A/C domain CHH_RS05090 PF03372 Endonuclease/Exonuclease/phosphatase family CHH_RS05105 PF01474 Class-II DAHP synthetase family CHH_RS05115 PF00813 FliP family CHH_RS05120 PF03061 Thioesterase superfamily CHH_RS05150 PF00550 Phosphopantetheine attachment site CHH_RS05180 PF12804 MobA-like NTP transferase domain CHH_RS05180 PF00132 Bacterial transferase hexapeptide (six repeats) CHH_RS05185 PF04127 DNA / pantothenate metabolism flavoprotein CHH_RS05185 PF02441 Flavoprotein CHH_RS05195 PF01255 Putative undecaprenyl diphosphate synthase CHH_RS05200 PF06750 Bacterial Peptidase A24 N-terminal domain CHH_RS05200 PF01478 Type IV leader peptidase family CHH_RS05210 PF01416 tRNA pseudouridine synthase CHH_RS05215 PF13291 ACT domain CHH_RS05215 PF00291 Pyridoxal-phosphate dependent enzyme CHH_RS05225 PF04076 Bacterial OB fold (BOF) protein CHH_RS05230 PF01555 DNA methylase CHH_RS05235 PF04851 Type III restriction enzyme, res subunit CHH_RS05255 PF00271 Helicase conserved C-terminal domain CHH_RS05255 PF03461 TRCF domain CHH_RS05255 PF00270 DEAD/DEAH box helicase CHH_RS05255 PF02559 CarD-like/TRCF domain CHH_RS05255 PF17757 UvrB interaction domain CHH_RS05265 PF01551 Peptidase family M23 CHH_RS05265 PF04225 Opacity-associated protein A LysM-like domain CHH_RS05275 PF00990 Diguanylate cyclase, GGDEF domain CHH_RS05285 PF00133 tRNA synthetases class I (I, L, M and V) CHH_RS05285 PF13603 Leucyl-tRNA synthetase, Domain 2 CHH_RS05285 PF09334 tRNA synthetases class I (M) CHH_RS05295 PF07549 SecD/SecF GG Motif CHH_RS05295 PF02355 Protein export membrane protein CHH_RS05300 PF02355 Protein export membrane protein CHH_RS05305 PF02699 Preprotein translocase subunit CHH_RS05315 PF00950 ABC 3 transport family CHH_RS05320 PF00950 ABC 3 transport family CHH_RS05325 PF00005 ABC transporter CHH_RS05330 PF01297 Zinc-uptake complex component A periplasmic CHH_RS05335 PF00438 S-adenosylmethionine synthetase, N-terminal domain CHH_RS05335 PF02773 S-adenosylmethionine synthetase, C-terminal domain CHH_RS05335 PF02772 S-adenosylmethionine synthetase, central domain CHH_RS05340 PF00375 Sodium:dicarboxylate symporter family CHH_RS05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH_RS05360 PF00580 UvrD/REP helicase N-terminal domain CHH_RS05360 PF13361 UvrD-like helicase C-terminal domain CHH_RS05365 PF01509 TruB family pseudouridylate synthase (N terminal domain) CHH_RS05370 PF02599 Global regulator protein family CHH_RS05375 PF00288 GHMP kinases N terminal domain CHH_RS05380 PF01668 SmpB protein CHH_RS05390 PF02617 ATP-dependent Clp protease adaptor protein ClpS CHH_RS05395 PF00004 ATPase family associated with various cellular activities (AAA) CHH_RS05395 PF10431 C-terminal, D2-small domain, of ClpB protein CHH_RS05395 PF02861 Clp amino terminal domain, pathogenicity island component CHH_RS05395 PF07724 AAA domain (Cdc48 subfamily) CHH_RS05395 PF17871 AAA lid domain CHH_RS05405 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CHH_RS05410 PF00460 Flagella basal body rod protein CHH_RS05415 PF00460 Flagella basal body rod protein CHH_RS05415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH_RS05420 PF02049 Flagellar hook-basal body complex protein FliE CHH_RS05425 PF03717 Penicillin-binding Protein dimerisation domain CHH_RS05425 PF00905 Penicillin binding protein transpeptidase domain CHH_RS05430 PF00762 Ferrochelatase CHH_RS05435 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CHH_RS05435 PF01411 tRNA synthetases class II (A) CHH_RS05435 PF02272 DHHA1 domain CHH_RS05445 PF02545 Maf-like protein CHH_RS05450 PF17092 Penicillin-binding protein OB-like domain CHH_RS05450 PF00912 Transglycosylase CHH_RS05450 PF00905 Penicillin binding protein transpeptidase domain CHH_RS05460 PF01245 Ribosomal protein L19 CHH_RS05465 PF01746 tRNA (Guanine-1)-methyltransferase CHH_RS05470 PF05239 PRC-barrel domain CHH_RS05470 PF01782 RimM N-terminal domain CHH_RS05480 PF00886 Ribosomal protein S16 CHH_RS05485 PF02881 SRP54-type protein, helical bundle domain CHH_RS05485 PF00448 SRP54-type protein, GTPase domain CHH_RS05485 PF02978 Signal peptide binding domain CHH_RS05520 PF00005 ABC transporter CHH_RS05535 PF01891 Cobalt uptake substrate-specific transmembrane region CHH_RS05545 PF00849 RNA pseudouridylate synthase CHH_RS05550 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CHH_RS05550 PF02390 Putative methyltransferase CHH_RS05560 PF01784 NIF3 (NGG1p interacting factor 3) CHH_RS05565 PF02091 Glycyl-tRNA synthetase alpha subunit CHH_RS05575 PF00731 AIR carboxylase CHH_RS05580 PF01136 Peptidase family U32 CHH_RS05590 PF02811 PHP domain CHH_RS05595 PF00120 Glutamine synthetase, catalytic domain CHH_RS05595 PF03951 Glutamine synthetase, beta-Grasp domain CHH_RS05605 PF00023 Ankyrin repeat CHH_RS05605 PF12796 Ankyrin repeats (3 copies) CHH_RS05610 PF00199 Catalase CHH_RS05610 PF06628 Catalase-related immune-responsive CHH_RS05625 PF05362 Lon protease (S16) C-terminal proteolytic domain CHH_RS05625 PF02190 ATP-dependent protease La (LON) substrate-binding domain CHH_RS05625 PF00004 ATPase family associated with various cellular activities (AAA) CHH_RS05630 PF13525 Outer membrane lipoprotein CHH_RS05635 PF00271 Helicase conserved C-terminal domain CHH_RS05635 PF04851 Type III restriction enzyme, res subunit CHH_RS05640 PF00675 Insulinase (Peptidase family M16) CHH_RS05640 PF05193 Peptidase M16 inactive domain CHH_RS05645 PF02887 Pyruvate kinase, alpha/beta domain CHH_RS05645 PF00391 PEP-utilising enzyme, mobile domain CHH_RS05645 PF00224 Pyruvate kinase, barrel domain CHH_RS05655 PF06039 Malate:quinone oxidoreductase (Mqo) CHH_RS05660 PF01546 Peptidase family M20/M25/M40 CHH_RS05660 PF07687 Peptidase dimerisation domain CHH_RS05670 PF00990 Diguanylate cyclase, GGDEF domain CHH_RS05670 PF10442 FIST C domain CHH_RS05670 PF08495 FIST N domain CHH_RS05670 PF00563 EAL domain CHH_RS05675 PF01713 Smr domain CHH_RS05675 PF00488 MutS domain V CHH_RS05710 PF01225 Mur ligase family, catalytic domain CHH_RS05710 PF02875 Mur ligase family, glutamate ligase domain CHH_RS05710 PF08245 Mur ligase middle domain CHH_RS05725 PF17827 PrmC N-terminal domain CHH_RS05725 PF05175 Methyltransferase small domain CHH_RS05730 PF16491 CAAX prenyl protease N-terminal, five membrane helices CHH_RS05730 PF01435 Peptidase family M48 CHH_RS05735 PF00209 Sodium:neurotransmitter symporter family CHH_RS05740 PF00005 ABC transporter CHH_RS05740 PF16326 ABC transporter C-terminal domain CHH_RS05740 PF12848 ABC transporter CHH_RS05745 PF00083 Sugar (and other) transporter CHH_RS05745 PF08946 Osmosensory transporter coiled coil CHH_RS05750 PF00916 Sulfate permease family CHH_RS05750 PF01740 STAS domain CHH_RS05755 PF00486 Transcriptional regulatory protein, C terminal CHH_RS05755 PF00072 Response regulator receiver domain CHH_RS05760 PF00512 His Kinase A (phospho-acceptor) domain CHH_RS05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS05760 PF07689 KaiB domain CHH_RS05765 PF01554 MatE CHH_RS05775 PF03616 Sodium/glutamate symporter CHH_RS05785 PF00795 Carbon-nitrogen hydrolase CHH_RS05790 PF01545 Cation efflux family CHH_RS05790 PF16916 Dimerisation domain of Zinc Transporter CHH_RS05795 PF04371 Porphyromonas-type peptidyl-arginine deiminase CHH_RS05800 PF00085 Thioredoxin CHH_RS05805 PF00005 ABC transporter CHH_RS05805 PF02687 FtsX-like permease family CHH_RS05805 PF12704 MacB-like periplasmic core domain CHH_RS05825 PF10634 Fe2+ transport protein CHH_RS05830 PF03239 Iron permease FTR1 family CHH_RS05835 PF00460 Flagella basal body rod protein CHH_RS05835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH_RS05840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH_RS05840 PF00460 Flagella basal body rod protein CHH_RS05845 PF00140 Sigma-70 factor, region 1.2 CHH_RS05845 PF04545 Sigma-70, region 4 CHH_RS05845 PF04539 Sigma-70 region 3 CHH_RS05845 PF04542 Sigma-70 region 2 CHH_RS05850 PF00669 Bacterial flagellin N-terminal helical region CHH_RS05855 PF00815 Histidinol dehydrogenase CHH_RS05875 PF01116 Fructose-bisphosphate aldolase class-II CHH_RS05885 PF00633 Helix-hairpin-helix motif CHH_RS05885 PF10576 Iron-sulfur binding domain of endonuclease III CHH_RS05885 PF00730 HhH-GPD superfamily base excision DNA repair protein CHH_RS05890 PF00202 Aminotransferase class-III CHH_RS05895 PF01867 CRISPR associated protein Cas1 CHH_RS05910 PF00270 DEAD/DEAH box helicase CHH_RS05910 PF18019 HD domain CHH_RS05910 PF00271 Helicase conserved C-terminal domain CHH_RS05935 PF10531 SLBB domain CHH_RS05965 PF09335 SNARE associated Golgi protein CHH_RS05975 PF01966 HD domain CHH_RS05975 PF12072 Domain of unknown function (DUF3552) CHH_RS05985 PF00578 AhpC/TSA family CHH_RS05990 PF00448 SRP54-type protein, GTPase domain CHH_RS05995 PF18073 Rubredoxin metal binding domain CHH_RS06040 PF02548 Ketopantoate hydroxymethyltransferase CHH_RS06050 PF17864 RuvB AAA lid domain CHH_RS06050 PF05496 Holliday junction DNA helicase RuvB P-loop domain CHH_RS06050 PF05491 RuvB C-terminal winged helix domain CHH_RS06055 PF01594 AI-2E family transporter CHH_RS06060 PF02405 Permease MlaE CHH_RS06065 PF00005 ABC transporter CHH_RS06080 PF02130 Uncharacterized protein family UPF0054 CHH_RS06130 PF00474 Sodium:solute symporter family CHH_RS06135 PF00528 Binding-protein-dependent transport system inner membrane component CHH_RS06140 PF00005 ABC transporter CHH_RS06145 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH_RS06150 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH_RS06155 PF02581 Thiamine monophosphate synthase CHH_RS06160 PF02673 Bacitracin resistance protein BacA CHH_RS06175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS06175 PF00512 His Kinase A (phospho-acceptor) domain CHH_RS06190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CHH_RS06190 PF07733 Bacterial DNA polymerase III alpha NTPase domain CHH_RS06190 PF14579 Helix-hairpin-helix motif CHH_RS06190 PF02811 PHP domain CHH_RS06195 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CHH_RS06200 PF03264 NapC/NirT cytochrome c family, N-terminal region CHH_RS06210 PF01965 DJ-1/PfpI family CHH_RS06215 PF08207 Elongation factor P (EF-P) KOW-like domain CHH_RS06215 PF01132 Elongation factor P (EF-P) OB domain CHH_RS06215 PF09285 Elongation factor P, C-terminal CHH_RS06220 PF01842 ACT domain CHH_RS06220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHH_RS06220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHH_RS06230 PF00575 S1 RNA binding domain CHH_RS06235 PF02401 LytB protein CHH_RS06240 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CHH_RS06245 PF01588 Putative tRNA binding domain CHH_RS06245 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CHH_RS06245 PF03483 B3/4 domain CHH_RS06245 PF03484 tRNA synthetase B5 domain CHH_RS06245 PF03147 Ferredoxin-fold anticodon binding domain CHH_RS06250 PF01409 tRNA synthetases class II core domain (F) CHH_RS06250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CHH_RS06255 PF01230 HIT domain CHH_RS06265 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CHH_RS06265 PF00013 KH domain CHH_RS06265 PF03725 3' exoribonuclease family, domain 2 CHH_RS06265 PF00575 S1 RNA binding domain CHH_RS06265 PF01138 3' exoribonuclease family, domain 1 CHH_RS06285 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CHH_RS06285 PF02843 Phosphoribosylglycinamide synthetase, C domain CHH_RS06285 PF02844 Phosphoribosylglycinamide synthetase, N domain CHH_RS06300 PF02540 NAD synthase CHH_RS06300 PF00958 GMP synthase C terminal domain CHH_RS06300 PF00117 Glutamine amidotransferase class-I CHH_RS06325 PF08459 UvrC Helix-hairpin-helix N-terminal CHH_RS06325 PF02151 UvrB/uvrC motif CHH_RS06325 PF01541 GIY-YIG catalytic domain CHH_RS06335 PF00512 His Kinase A (phospho-acceptor) domain CHH_RS06335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHH_RS06335 PF00672 HAMP domain CHH_RS06335 PF00072 Response regulator receiver domain CHH_RS06335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS06335 PF01627 Hpt domain CHH_RS06340 PF00196 Bacterial regulatory proteins, luxR family CHH_RS06340 PF00072 Response regulator receiver domain CHH_RS06380 PF03061 Thioesterase superfamily CHH_RS06385 PF01641 SelR domain CHH_RS06385 PF01625 Peptide methionine sulfoxide reductase CHH_RS06395 PF00137 ATP synthase subunit C CHH_RS06440 PF06719 AraC-type transcriptional regulator N-terminus CHH_RS06440 PF12833 Helix-turn-helix domain CHH_RS06445 PF00465 Iron-containing alcohol dehydrogenase CHH_RS06450 PF00209 Sodium:neurotransmitter symporter family CHH_RS06455 PF00682 HMGL-like CHH_RS06455 PF08502 LeuA allosteric (dimerisation) domain CHH_RS06460 PF12323 Helix-turn-helix domain CHH_RS06460 PF01385 Probable transposase CHH_RS06460 PF07282 Putative transposase DNA-binding domain CHH_RS06465 PF00376 MerR family regulatory protein CHH_RS06465 PF09278 MerR, DNA binding CHH_RS06470 PF00364 Biotin-requiring enzyme CHH_RS06475 PF01293 Phosphoenolpyruvate carboxykinase CHH_RS06480 PF00206 Lyase CHH_RS06480 PF14698 Argininosuccinate lyase C-terminal CHH_RS06485 PF12729 Four helix bundle sensory module for signal transduction CHH_RS06485 PF00672 HAMP domain CHH_RS06485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH_RS06490 PF02583 Metal-sensitive transcriptional repressor CHH_RS06495 PF16916 Dimerisation domain of Zinc Transporter CHH_RS06495 PF01545 Cation efflux family CHH_RS06505 PF02421 Ferrous iron transport protein B CHH_RS06505 PF07664 Ferrous iron transport protein B C terminus CHH_RS06505 PF07670 Nucleoside recognition CHH_RS06520 PF03144 Elongation factor Tu domain 2 CHH_RS06520 PF14492 Elongation Factor G, domain II CHH_RS06520 PF03764 Elongation factor G, domain IV CHH_RS06520 PF00679 Elongation factor G C-terminus CHH_RS06520 PF00009 Elongation factor Tu GTP binding domain CHH_RS06525 PF00177 Ribosomal protein S7p/S5e CHH_RS06530 PF00164 Ribosomal protein S12/S23 CHH_RS06535 PF04983 RNA polymerase Rpb1, domain 3 CHH_RS06535 PF05000 RNA polymerase Rpb1, domain 4 CHH_RS06535 PF04998 RNA polymerase Rpb1, domain 5 CHH_RS06535 PF04997 RNA polymerase Rpb1, domain 1 CHH_RS06535 PF00623 RNA polymerase Rpb1, domain 2 CHH_RS06540 PF04563 RNA polymerase beta subunit CHH_RS06540 PF00562 RNA polymerase Rpb2, domain 6 CHH_RS06540 PF04560 RNA polymerase Rpb2, domain 7 CHH_RS06540 PF04561 RNA polymerase Rpb2, domain 2 CHH_RS06540 PF10385 RNA polymerase beta subunit external 1 domain CHH_RS06540 PF04565 RNA polymerase Rpb2, domain 3 CHH_RS06545 PF16320 Ribosomal protein L7/L12 dimerisation domain CHH_RS06545 PF00542 Ribosomal protein L7/L12 C-terminal domain CHH_RS06550 PF00466 Ribosomal protein L10 CHH_RS06555 PF00687 Ribosomal protein L1p/L10e family CHH_RS06560 PF03946 Ribosomal protein L11, N-terminal domain CHH_RS06560 PF00298 Ribosomal protein L11, RNA binding domain CHH_RS06565 PF02357 Transcription termination factor nusG CHH_RS06580 PF00471 Ribosomal protein L33 CHH_RS06585 PF03144 Elongation factor Tu domain 2 CHH_RS06585 PF00009 Elongation factor Tu GTP binding domain CHH_RS06585 PF03143 Elongation factor Tu C-terminal domain CHH_RS06615 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CHH_RS06620 PF01029 NusB family CHH_RS06625 PF00885 6,7-dimethyl-8-ribityllumazine synthase CHH_RS06630 PF00893 Small Multidrug Resistance protein CHH_RS06640 PF00793 DAHP synthetase I family CHH_RS06645 PF00892 EamA-like transporter family CHH_RS06650 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CHH_RS06650 PF01926 50S ribosome-binding GTPase CHH_RS06655 PF01202 Shikimate kinase CHH_RS06660 PF00579 tRNA synthetases class I (W and Y) CHH_RS06665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHH_RS06665 PF02403 Seryl-tRNA synthetase N-terminal domain CHH_RS06675 PF08502 LeuA allosteric (dimerisation) domain CHH_RS06675 PF00682 HMGL-like CHH_RS06680 PF01066 CDP-alcohol phosphatidyltransferase CHH_RS06690 PF00004 ATPase family associated with various cellular activities (AAA) CHH_RS06690 PF17862 AAA+ lid domain CHH_RS06690 PF01434 Peptidase family M41 CHH_RS06700 PF00072 Response regulator receiver domain CHH_RS06705 PF00977 Histidine biosynthesis protein CHH_RS06710 PF00117 Glutamine amidotransferase class-I CHH_RS06720 PF02719 Polysaccharide biosynthesis protein CHH_RS06725 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CHH_RS06735 PF02423 Ornithine cyclodeaminase/mu-crystallin family CHH_RS06740 PF00550 Phosphopantetheine attachment site CHH_RS06745 PF00501 AMP-binding enzyme CHH_RS06745 PF13193 AMP-binding enzyme C-terminal domain CHH_RS06750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHH_RS06750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CHH_RS06770 PF08245 Mur ligase middle domain CHH_RS06775 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CHH_RS06775 PF00953 Glycosyl transferase family 4 CHH_RS06780 PF01676 Metalloenzyme superfamily CHH_RS06780 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CHH_RS06795 PF00550 Phosphopantetheine attachment site CHH_RS06800 PF00109 Beta-ketoacyl synthase, N-terminal domain CHH_RS06800 PF02801 Beta-ketoacyl synthase, C-terminal domain CHH_RS06805 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CHH_RS06820 PF00472 RF-1 domain CHH_RS06820 PF03462 PCRF domain CHH_RS06825 PF02569 Pantoate-beta-alanine ligase CHH_RS06830 PF18693 TRAM domain CHH_RS06830 PF04055 Radical SAM superfamily CHH_RS06830 PF00919 Uncharacterized protein family UPF0004 CHH_RS06835 PF01171 PP-loop family CHH_RS06855 PF04028 Domain of unknown function (DUF374) CHH_RS06860 PF00919 Uncharacterized protein family UPF0004 CHH_RS06860 PF01938 TRAM domain CHH_RS06860 PF04055 Radical SAM superfamily CHH_RS06870 PF08529 NusA N-terminal domain CHH_RS06870 PF13184 NusA-like KH domain CHH_RS06880 PF09186 Domain of unknown function (DUF1949) CHH_RS06880 PF01205 Uncharacterized protein family UPF0029 CHH_RS06885 PF06968 Biotin and Thiamin Synthesis associated domain CHH_RS06885 PF04055 Radical SAM superfamily CHH_RS06890 PF05690 Thiazole biosynthesis protein ThiG CHH_RS06895 PF00899 ThiF family CHH_RS06905 PF02554 Carbon starvation protein CstA CHH_RS06905 PF13722 5TM C-terminal transporter carbon starvation CstA CHH_RS06920 PF12848 ABC transporter CHH_RS06920 PF00005 ABC transporter CHH_RS06925 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CHH_RS06925 PF14602 Hexapeptide repeat of succinyl-transferase CHH_RS06930 PF10609 NUBPL iron-transfer P-loop NTPase CHH_RS06930 PF01883 Iron-sulfur cluster assembly protein CHH_RS06935 PF01964 Radical SAM ThiC family CHH_RS06940 PF02542 YgbB family CHH_RS06940 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CHH_RS06945 PF00486 Transcriptional regulatory protein, C terminal CHH_RS06945 PF00072 Response regulator receiver domain CHH_RS06955 PF04608 Phosphatidylglycerophosphatase A CHH_RS06965 PF05140 ResB-like family CHH_RS06965 PF01578 Cytochrome C assembly protein CHH_RS06970 PF00005 ABC transporter CHH_RS06975 PF00005 ABC transporter CHH_RS06975 PF12399 Branched-chain amino acid ATP-binding cassette transporter CHH_RS06980 PF11862 Domain of unknown function (DUF3382) CHH_RS06980 PF02653 Branched-chain amino acid transport system / permease component CHH_RS06985 PF02653 Branched-chain amino acid transport system / permease component CHH_RS06990 PF13458 Periplasmic binding protein CHH_RS06995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CHH_RS06995 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CHH_RS07000 PF05538 Campylobacter major outer membrane protein CHH_RS07005 PF05538 Campylobacter major outer membrane protein CHH_RS07020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHH_RS07020 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CHH_RS07020 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CHH_RS07020 PF10371 Domain of unknown function CHH_RS07020 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CHH_RS07025 PF13419 Haloacid dehalogenase-like hydrolase CHH_RS07030 PF05552 Conserved TM helix CHH_RS07030 PF00924 Mechanosensitive ion channel CHH_RS07035 PF00691 OmpA family CHH_RS07035 PF05736 OprF membrane domain CHH_RS07040 PF00380 Ribosomal protein S9/S16 CHH_RS07045 PF00572 Ribosomal protein L13 CHH_RS07050 PF13361 UvrD-like helicase C-terminal domain CHH_RS07050 PF00580 UvrD/REP helicase N-terminal domain CHH_RS07050 PF12705 PD-(D/E)XK nuclease superfamily CHH_RS07075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CHH_RS07075 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CHH_RS07090 PF00115 Cytochrome C and Quinol oxidase polypeptide I CHH_RS07095 PF00072 Response regulator receiver domain CHH_RS07095 PF00486 Transcriptional regulatory protein, C terminal CHH_RS07100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH_RS07100 PF08447 PAS fold CHH_RS07110 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CHH_RS07110 PF00117 Glutamine amidotransferase class-I CHH_RS07130 PF00709 Adenylosuccinate synthetase CHH_RS07135 PF13393 Histidyl-tRNA synthetase CHH_RS07140 PF00563 EAL domain CHH_RS07140 PF03707 Bacterial signalling protein N terminal repeat CHH_RS07140 PF00990 Diguanylate cyclase, GGDEF domain CHH_RS07170 PF03459 TOBE domain CHH_RS07185 PF08402 TOBE domain CHH_RS07185 PF00005 ABC transporter CHH_RS07190 PF00528 Binding-protein-dependent transport system inner membrane component CHH_RS07205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHH_RS07205 PF04509 CheC-like family CHH_RS07215 PF00290 Tryptophan synthase alpha chain CHH_RS07220 PF00291 Pyridoxal-phosphate dependent enzyme CHH_RS07225 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CHH_RS07230 PF00117 Glutamine amidotransferase class-I CHH_RS07230 PF02885 Glycosyl transferase family, helical bundle domain CHH_RS07230 PF00591 Glycosyl transferase family, a/b domain CHH_RS07235 PF04715 Anthranilate synthase component I, N terminal region CHH_RS07235 PF00425 chorismate binding enzyme CHH_RS07240 PF00669 Bacterial flagellin N-terminal helical region CHH_RS07240 PF07196 Flagellin hook IN motif CHH_RS07240 PF00700 Bacterial flagellin C-terminal helical region CHH_RS07245 PF00939 Sodium:sulfate symporter transmembrane region CHH_RS07250 PF17755 UvrA DNA-binding domain CHH_RS07250 PF00005 ABC transporter CHH_RS07250 PF17760 UvrA interaction domain CHH_RS07260 PF01312 FlhB HrpN YscU SpaS Family CHH_RS07265 PF00881 Nitroreductase family CHH_RS07270 PF00586 AIR synthase related protein, N-terminal domain CHH_RS07270 PF02769 AIR synthase related protein, C-terminal domain CHH_RS07280 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CHH_RS07285 PF01195 Peptidyl-tRNA hydrolase CHH_RS07290 PF14693 Ribosomal protein TL5, C-terminal domain CHH_RS07290 PF01386 Ribosomal L25p family CHH_RS07295 PF00437 Type II/IV secretion system protein CHH_RS07300 PF00923 Transaldolase/Fructose-6-phosphate aldolase CHH_RS07310 PF01584 CheW-like domain CHH_RS07315 PF00072 Response regulator receiver domain CHH_RS07315 PF01627 Hpt domain CHH_RS07315 PF02895 Signal transducing histidine kinase, homodimeric domain CHH_RS07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH_RS07315 PF01584 CheW-like domain CHH_RS07320 PF01584 CheW-like domain CHH_RS07320 PF00072 Response regulator receiver domain CHH_RS07330 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHH_RS07330 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHH_RS07335 PF01272 Transcription elongation factor, GreA/GreB, C-term CHH_RS07335 PF03449 Transcription elongation factor, N-terminal CHH_RS07340 PF02684 Lipid-A-disaccharide synthetase CHH_RS07345 PF01975 Survival protein SurE CHH_RS07350 PF00899 ThiF family CHH_RS07370 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CHH_RS07370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHH_RS07370 PF02142 MGS-like domain CHH_RS07385 PF10431 C-terminal, D2-small domain, of ClpB protein CHH_RS07385 PF07724 AAA domain (Cdc48 subfamily) CHH_RS07385 PF06689 ClpX C4-type zinc finger CHH_RS07390 PF00132 Bacterial transferase hexapeptide (six repeats) CHH_RS07390 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CHH_RS07395 PF07977 FabA-like domain CHH_RS07410 PF04055 Radical SAM superfamily CHH_RS07415 PF01208 Uroporphyrinogen decarboxylase (URO-D) CHH_RS07425 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHH_RS07425 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHH_RS07430 PF00158 Sigma-54 interaction domain CHH_RS07430 PF00072 Response regulator receiver domain CHH_RS07445 PF00521 DNA gyrase/topoisomerase IV, subunit A CHH_RS07445 PF03989 DNA gyrase C-terminal domain, beta-propeller CHH_RS07465 PF00501 AMP-binding enzyme CHH_RS07465 PF13193 AMP-binding enzyme C-terminal domain CHH_RS07470 PF16254 Domain of unknown function (DUF4910) CHH_RS07470 PF16221 winged helix-turn-helix CHH_RS07470 PF09940 Domain of unknown function (DUF2172) CHH_RS07490 PF01361 Tautomerase enzyme CHH_RS07495 PF00009 Elongation factor Tu GTP binding domain CHH_RS07495 PF06421 GTP-binding protein LepA C-terminus CHH_RS07495 PF00679 Elongation factor G C-terminus CHH_RS07495 PF03144 Elongation factor Tu domain 2 CHH_RS07500 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CHH_RS07500 PF14572 Phosphoribosyl synthetase-associated domain CHH_RS07505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHH_RS07505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHH_RS07510 PF01979 Amidohydrolase family CHH_RS07515 PF08334 Type II secretion system (T2SS), protein G CHH_RS07515 PF07963 Prokaryotic N-terminal methylation motif CHH_RS07535 PF03641 Possible lysine decarboxylase CHH_RS07540 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH_RS07540 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CHH_RS07545 PF00310 Glutamine amidotransferases class-II CHH_RS07545 PF01493 GXGXG motif CHH_RS07545 PF01645 Conserved region in glutamate synthase CHH_RS07545 PF04898 Glutamate synthase central domain CHH_RS07550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CHH_RS07550 PF01872 RibD C-terminal domain CHH_RS07560 PF02576 RimP N-terminal domain CHH_RS07560 PF17384 RimP C-terminal SH3 domain CHH_RS07565 PF02033 Ribosome-binding factor A CHH_RS07570 PF11987 Translation-initiation factor 2 CHH_RS07570 PF00009 Elongation factor Tu GTP binding domain CHH_RS07570 PF04760 Translation initiation factor IF-2, N-terminal region CHH_RS07580 PF00288 GHMP kinases N terminal domain CHH_RS07590 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CHH_RS07595 PF02567 Phenazine biosynthesis-like protein CHH_RS07605 PF02153 Prephenate dehydrogenase CHH_RS07605 PF01842 ACT domain CHH_RS07610 PF07244 Surface antigen variable number repeat CHH_RS07610 PF01103 Surface antigen CHH_RS07615 PF03473 MOSC domain CHH_RS07620 PF07282 Putative transposase DNA-binding domain CHH_RS07620 PF12323 Helix-turn-helix domain CHH_RS07620 PF01385 Probable transposase CHH_RS07625 PF09278 MerR, DNA binding CHH_RS07625 PF00376 MerR family regulatory protein CHH_RS07630 PF01343 Peptidase family S49 CHH_RS07635 PF01979 Amidohydrolase family CHH_RS07640 PF01220 Dehydroquinase class II CHH_RS07645 PF00557 Metallopeptidase family M24 CHH_RS07645 PF01321 Creatinase/Prolidase N-terminal domain CHH_RS07650 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CHH_RS07655 PF00448 SRP54-type protein, GTPase domain CHH_RS07660 PF10609 NUBPL iron-transfer P-loop NTPase CHH_RS07670 PF04542 Sigma-70 region 2 CHH_RS07670 PF04539 Sigma-70 region 3 CHH_RS07670 PF04545 Sigma-70, region 4 CHH_RS07675 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHH_RS07675 PF02154 Flagellar motor switch protein FliM CHH_RS07680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHH_RS07680 PF04509 CheC-like family CHH_RS07685 PF01171 PP-loop family CHH_RS07690 PF01048 Phosphorylase superfamily CHH_RS07695 PF00698 Acyl transferase domain CHH_RS07700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHH_RS07710 PF00691 OmpA family CHH_RS07715 PF04052 TolB amino-terminal domain CHH_RS07725 PF02472 Biopolymer transport protein ExbD/TolR CHH_RS07730 PF01618 MotA/TolQ/ExbB proton channel family CHH_RS07735 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CHH_RS07740 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHH_RS07740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH_RS07745 PF00231 ATP synthase CHH_RS07750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH_RS07750 PF00306 ATP synthase alpha/beta chain, C terminal domain CHH_RS07750 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHH_RS07755 PF00213 ATP synthase delta (OSCP) subunit CHH_RS07760 PF00430 ATP synthase B/B' CF(0) CHH_RS07765 PF00430 ATP synthase B/B' CF(0) CHH_RS07770 PF17762 HTH domain found in ParB protein CHH_RS07770 PF02195 ParB-like nuclease domain CHH_RS07775 PF13614 AAA domain CHH_RS07780 PF08279 HTH domain CHH_RS07780 PF03099 Biotin/lipoate A/B protein ligase family CHH_RS07780 PF02237 Biotin protein ligase C terminal domain CHH_RS07785 PF00551 Formyl transferase CHH_RS07785 PF02911 Formyl transferase, C-terminal domain CHH_RS07790 PF00696 Amino acid kinase family CHH_RS07795 PF01018 GTP1/OBG CHH_RS07795 PF01926 50S ribosome-binding GTPase CHH_RS07800 PF01016 Ribosomal L27 protein CHH_RS07805 PF00829 Ribosomal prokaryotic L21 protein CHH_RS07820 PF03150 Di-haem cytochrome c peroxidase CHH_RS07820 PF00034 Cytochrome c CHH_RS07825 PF13247 4Fe-4S dicluster domain CHH_RS07830 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CHH_RS07830 PF12838 4Fe-4S dicluster domain CHH_RS07830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHH_RS07830 PF01568 Molydopterin dinucleotide binding domain CHH_RS07830 PF00384 Molybdopterin oxidoreductase CHH_RS07835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHH_RS07835 PF00384 Molybdopterin oxidoreductase CHH_RS07835 PF01568 Molydopterin dinucleotide binding domain CHH_RS07855 PF03841 L-seryl-tRNA selenium transferase CHH_RS07860 PF00009 Elongation factor Tu GTP binding domain CHH_RS07860 PF03144 Elongation factor Tu domain 2 CHH_RS07860 PF09106 Elongation factor SelB, winged helix CHH_RS07860 PF09107 Elongation factor SelB, winged helix CHH_RS07860 PF09105 Elongation factor SelB, winged helix CHH_RS07870 PF02348 Cytidylyltransferase CHH_RS07875 PF07478 D-ala D-ala ligase C-terminus CHH_RS07875 PF01820 D-ala D-ala ligase N-terminus CHH_RS07880 PF01820 D-ala D-ala ligase N-terminus CHH_RS07880 PF07478 D-ala D-ala ligase C-terminus CHH_RS07910 PF02348 Cytidylyltransferase CHH_RS07915 PF08889 WbqC-like protein family CHH_RS07930 PF08666 SAF domain CHH_RS07930 PF03102 NeuB family CHH_RS07935 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CHH_RS07935 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CHH_RS07940 PF02621 Menaquinone biosynthesis CHH_RS07955 PF01515 Phosphate acetyl/butaryl transferase CHH_RS07955 PF00390 Malic enzyme, N-terminal domain CHH_RS07955 PF03949 Malic enzyme, NAD binding domain CHH_RS07960 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHH_RS07970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHH_RS07970 PF00289 Biotin carboxylase, N-terminal domain CHH_RS07970 PF02785 Biotin carboxylase C-terminal domain CHH_RS07975 PF00364 Biotin-requiring enzyme CHH_RS07980 PF00528 Binding-protein-dependent transport system inner membrane component CHH_RS07990 PF00692 dUTPase CHH_RS07995 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CHH_RS08005 PF03807 NADP oxidoreductase coenzyme F420-dependent CHH_RS08005 PF14748 Pyrroline-5-carboxylate reductase dimerisation CHH_RS08015 PF04055 Radical SAM superfamily CHH_RS08015 PF06969 HemN C-terminal domain CHH_RS08020 PF10788 Protein of unknown function (DUF2603) CHH_RS08025 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHH_RS08025 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHH_RS08030 PF00490 Delta-aminolevulinic acid dehydratase CHH_RS08035 PF00925 GTP cyclohydrolase II CHH_RS08040 PF02527 rRNA small subunit methyltransferase G CHH_RS08055 PF01435 Peptidase family M48 CHH_RS08060 PF00842 Alanine racemase, C-terminal domain CHH_RS08060 PF01168 Alanine racemase, N-terminal domain CHH_RS08075 PF04314 Copper chaperone PCu(A)C CHH_RS08080 PF02719 Polysaccharide biosynthesis protein CHH_RS08085 PF07196 Flagellin hook IN motif CHH_RS08085 PF00669 Bacterial flagellin N-terminal helical region CHH_RS08085 PF00700 Bacterial flagellin C-terminal helical region CHH_RS08090 PF00700 Bacterial flagellin C-terminal helical region CHH_RS08090 PF07196 Flagellin hook IN motif CHH_RS08090 PF00669 Bacterial flagellin N-terminal helical region CHH_RS08105 PF03605 Anaerobic c4-dicarboxylate membrane transporter CHH_RS08110 PF00206 Lyase CHH_RS08110 PF10415 Fumarase C C-terminus CHH_RS08115 PF12951 Passenger-associated-transport-repeat CHH_RS08115 PF00082 Subtilase family CHH_RS08115 PF03797 Autotransporter beta-domain CHH_RS08120 PF01594 AI-2E family transporter CHH_RS08125 PF01925 Sulfite exporter TauE/SafE CHH_RS08140 PF01261 Xylose isomerase-like TIM barrel CHH_RS08150 PF13193 AMP-binding enzyme C-terminal domain CHH_RS08150 PF00501 AMP-binding enzyme CHH_RS08155 PF17862 AAA+ lid domain CHH_RS08155 PF01434 Peptidase family M41 CHH_RS08155 PF00004 ATPase family associated with various cellular activities (AAA) CHH_RS08165 PF04055 Radical SAM superfamily CHH_RS08165 PF06969 HemN C-terminal domain CHH_RS08175 PF04461 Protein of unknown function (DUF520) CHH_RS08180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHH_RS08180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHH_RS08185 PF02441 Flavoprotein CHH_RS08190 PF03738 Glutathionylspermidine synthase preATP-grasp CHH_RS08215 PF00593 TonB dependent receptor CHH_RS08215 PF07715 TonB-dependent Receptor Plug Domain CHH_RS08220 PF01618 MotA/TolQ/ExbB proton channel family CHH_RS08225 PF02472 Biopolymer transport protein ExbD/TolR CHH_RS08230 PF03544 Gram-negative bacterial TonB protein C-terminal CHH_RS08235 PF18766 SWI2/SNF2 ATPase CHH_RS08235 PF12008 Type I restriction and modification enzyme - subunit R C terminal CHH_RS08235 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CHH_RS08245 PF02384 N-6 DNA Methylase CHH_RS08245 PF12161 HsdM N-terminal domain CHH_RS08250 PF00080 Copper/zinc superoxide dismutase (SODC) CHH_RS08285 PF03741 Integral membrane protein TerC family CHH_RS08290 PF00551 Formyl transferase CHH_RS08295 PF01256 Carbohydrate kinase CHH_RS08295 PF03853 YjeF-related protein N-terminus CHH_RS08300 PF13335 Magnesium chelatase, subunit ChlI C-terminal CHH_RS08300 PF01078 Magnesium chelatase, subunit ChlI CHH_RS08305 PF01327 Polypeptide deformylase CHH_RS08315 PF00574 Clp protease CHH_RS08320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHH_RS08320 PF05698 Bacterial trigger factor protein (TF) C-terminus CHH_RS08320 PF05697 Bacterial trigger factor protein (TF) CHH_RS08325 PF01227 GTP cyclohydrolase I CHH_RS08330 PF18269 T3SS EscN ATPase C-terminal domain CHH_RS08330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH_RS08350 PF00266 Aminotransferase class-V CHH_RS08355 PF01592 NifU-like N terminal domain CHH_RS08355 PF01106 NifU-like domain CHH_RS08355 PF04324 BFD-like [2Fe-2S] binding domain CHH_RS08365 PF01814 Hemerythrin HHE cation binding domain CHH_RS08370 PF05198 Translation initiation factor IF-3, N-terminal domain CHH_RS08370 PF00707 Translation initiation factor IF-3, C-terminal domain CHH_RS08375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CHH_RS08375 PF03129 Anticodon binding domain CHH_RS08375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHH_RS08395 PF03653 Uncharacterised protein family (UPF0093) CHH_RS08405 PF01252 Signal peptidase (SPase) II CHH_RS08410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHH_RS08410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHH_RS08410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHH_RS08410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHH_RS08415 PF01649 Ribosomal protein S20 CHH_RS08420 PF03462 PCRF domain CHH_RS08420 PF00472 RF-1 domain CHH_RS08440 PF03372 Endonuclease/Exonuclease/phosphatase family CHH_RS08445 PF00884 Sulfatase CHH_RS08445 PF08019 Phosphoethanolamine transferase EptA/EptB CHH_RS08460 PF02659 Putative manganese efflux pump CHH_RS08470 PF00950 ABC 3 transport family CHH_RS08475 PF00005 ABC transporter CHH_RS08485 PF01297 Zinc-uptake complex component A periplasmic CHH_RS08495 PF01938 TRAM domain CHH_RS08495 PF05958 tRNA (Uracil-5-)-methyltransferase CHH_RS08500 PF14376 Haem-binding domain CHH_RS08500 PF03150 Di-haem cytochrome c peroxidase CHH_RS08500 PF00034 Cytochrome c CHH_RS08505 PF00990 Diguanylate cyclase, GGDEF domain CHH_RS08505 PF13188 PAS domain CHH_RS08505 PF03707 Bacterial signalling protein N terminal repeat CHH_RS08505 PF00563 EAL domain CHH_RS08510 PF00484 Carbonic anhydrase CHH_RS08515 PF00924 Mechanosensitive ion channel CHH_RS08520 PF01264 Chorismate synthase CHH_RS08525 PF00035 Double-stranded RNA binding motif CHH_RS08525 PF14622 Ribonuclease-III-like CHH_RS08530 PF00075 RNase H CHH_RS08540 PF08275 DNA primase catalytic core, N-terminal domain CHH_RS08540 PF01807 CHC2 zinc finger CHH_RS08570 PF00672 HAMP domain CHH_RS08570 PF17200 Single Cache domain 2 CHH_RS08570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH_RS08580 PF03553 Na+/H+ antiporter family CHH_RS08580 PF13726 Na+-H+ antiporter family CHH_RS08585 PF03222 Tryptophan/tyrosine permease family CHH_RS08590 PF00920 Dehydratase family CHH_RS08600 PF00117 Glutamine amidotransferase class-I CHH_RS08600 PF06418 CTP synthase N-terminus CHH_RS08605 PF17768 RecJ OB domain CHH_RS08605 PF01368 DHH family CHH_RS08605 PF02272 DHHA1 domain CHH_RS08610 PF06965 Na+/H+ antiporter 1 CHH_RS08615 PF01243 Pyridoxamine 5'-phosphate oxidase CHH_RS08630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH_RS08630 PF00460 Flagella basal body rod protein CHH_RS08630 PF07196 Flagellin hook IN motif CHH_RS08630 PF07559 Flagellar basal body protein FlaE CHH_RS08640 PF01678 Diaminopimelate epimerase CHH_RS08645 PF01121 Dephospho-CoA kinase CHH_RS08650 PF01042 Endoribonuclease L-PSP CHH_RS08655 PF00586 AIR synthase related protein, N-terminal domain CHH_RS08655 PF02769 AIR synthase related protein, C-terminal domain CHH_RS08660 PF16193 AAA C-terminal domain CHH_RS08660 PF12002 MgsA AAA+ ATPase C terminal CHH_RS08660 PF05496 Holliday junction DNA helicase RuvB P-loop domain CHH_RS08660 PF01661 Macro domain CHH_RS08665 PF00892 EamA-like transporter family CHH_RS08670 PF08534 Redoxin CHH_RS08680 PF00156 Phosphoribosyl transferase domain CHH_RS08685 PF01765 Ribosome recycling factor CHH_RS08695 PF03840 Preprotein translocase SecG subunit CHH_RS08700 PF01027 Inhibitor of apoptosis-promoting Bax1 CHH_RS08720 PF02525 Flavodoxin-like fold CHH_RS08795 PF13356 Arm DNA-binding domain CHH_RS08795 PF00589 Phage integrase family CHH_RS08825 PF02525 Flavodoxin-like fold CHH_RS08835 PF00106 short chain dehydrogenase CHH_RS08850 PF00248 Aldo/keto reductase family CHH_RS08855 PF03358 NADPH-dependent FMN reductase CHH_RS08860 PF13411 MerR HTH family regulatory protein CHH_RS08865 PF02511 Thymidylate synthase complementing protein CHH_RS08890 PF00881 Nitroreductase family CHH_RS08905 PF01479 S4 domain CHH_RS08905 PF00849 RNA pseudouridylate synthase CHH_RS08910 PF00571 CBS domain CHH_RS08910 PF01380 SIS domain CHH_RS08915 PF17770 Ribonuclease J C-terminal domain CHH_RS08915 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CHH_RS08915 PF00753 Metallo-beta-lactamase superfamily CHH_RS08920 PF00398 Ribosomal RNA adenine dimethylase CHH_RS08925 PF05977 Transmembrane secretion effector CHH_RS08930 PF00977 Histidine biosynthesis protein CHH_RS08940 PF04055 Radical SAM superfamily CHH_RS08950 PF00849 RNA pseudouridylate synthase CHH_RS08955 PF00206 Lyase CHH_RS08955 PF10397 Adenylosuccinate lyase C-terminus CHH_RS08960 PF03477 ATP cone domain CHH_RS08960 PF00317 Ribonucleotide reductase, all-alpha domain CHH_RS08960 PF02867 Ribonucleotide reductase, barrel domain CHH_RS08965 PF00324 Amino acid permease CHH_RS08970 PF02075 Crossover junction endodeoxyribonuclease RuvC