locus-tag	class	description
CHH_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CHH_RS00010	COG0592	DNA-directed DNA polymerase activity
CHH_RS00015	COG0187	DNA topoisomerase II activity
CHH_RS00025	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CHH_RS00060	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CHH_RS00070	COG1217	gtp-binding protein TYPA
CHH_RS00085	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CHH_RS00105	COG0438	transferase activity, transferring glycosyl groups
CHH_RS00110	COG3842	ATPase activity
CHH_RS00115	COG1454	alcohol dehydrogenase
CHH_RS00125	COG2226	methyltransferase
CHH_RS00130	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CHH_RS00140	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
CHH_RS00145	COG2089	acid synthase
CHH_RS00150	COG4310	Domain of unknown function (DUF2172)
CHH_RS00190	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CHH_RS00205	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CHH_RS00225	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CHH_RS00230	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CHH_RS00275	COG2226	methyltransferase
CHH_RS00295	COG1216	Glycosyl transferase, family 2
CHH_RS00295	COG0463	Glycosyl transferase, family 2
CHH_RS00315	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CHH_RS00345	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CHH_RS00360	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CHH_RS00380	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CHH_RS00380	COG4624	Iron only hydrogenase large subunit, C-terminal domain
CHH_RS00390	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CHH_RS00395	COG0051	transcription antitermination factor activity, RNA binding
CHH_RS00400	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CHH_RS00405	COG0088	Forms part of the polypeptide exit tunnel
CHH_RS00410	COG0089	rRNA binding
CHH_RS00415	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CHH_RS00420	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CHH_RS00425	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CHH_RS00430	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CHH_RS00435	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CHH_RS00445	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CHH_RS00450	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CHH_RS00455	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CHH_RS00465	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CHH_RS00470	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CHH_RS00475	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CHH_RS00480	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CHH_RS00485	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CHH_RS00490	COG0200	Binds to the 23S rRNA
CHH_RS00495	COG0201	protein transport
CHH_RS00500	COG0024	Methionine aminopeptidase
CHH_RS00505	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CHH_RS00510	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CHH_RS00515	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CHH_RS00520	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CHH_RS00525	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CHH_RS00530	COG0202	RNA polymerase activity
CHH_RS00535	COG0203	ribosomal protein L17
CHH_RS00550	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CHH_RS00555	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CHH_RS00560	COG0840	transmembrane signaling receptor activity
CHH_RS00565	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CHH_RS00580	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CHH_RS00585	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CHH_RS00590	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CHH_RS00595	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CHH_RS00600	COG1840	ABC-type Fe3 transport system, periplasmic component
CHH_RS00625	COG1309	transcriptional regulator
CHH_RS00630	COG0348	domain, Protein
CHH_RS00635	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CHH_RS00650	COG3260	NADH ubiquinone oxidoreductase 20
CHH_RS00655	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHH_RS00660	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
CHH_RS00660	COG3261	NADH dehydrogenase
CHH_RS00665	COG0651	ATP synthesis coupled electron transport
CHH_RS00670	COG4237	Hydrogenase 4 membrane
CHH_RS00675	COG0650	Formate hydrogenlyase subunit 4
CHH_RS00680	COG0651	ATP synthesis coupled electron transport
CHH_RS00685	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CHH_RS00700	COG1053	succinate dehydrogenase
CHH_RS00700	COG3976	FMN-binding domain protein
CHH_RS00715	COG4191	Histidine kinase
CHH_RS00720	COG0745	RESPONSE REGULATOR receiver
CHH_RS00755	COG0501	Belongs to the peptidase M48B family
CHH_RS00760	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CHH_RS00770	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CHH_RS00775	COG1253	flavin adenine dinucleotide binding
CHH_RS00805	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CHH_RS00810	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CHH_RS00815	COG0569	domain protein
CHH_RS00815	COG0475	glutathione-regulated potassium exporter activity
CHH_RS00820	COG0372	Belongs to the citrate synthase family
CHH_RS00830	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CHH_RS00835	COG0573	inorganic phosphate transmembrane transporter activity
CHH_RS00840	COG0581	inorganic phosphate transmembrane transporter activity
CHH_RS00845	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CHH_RS00855	COG2814	Major facilitator Superfamily
CHH_RS00865	COG0456	acetyltransferase
CHH_RS00865	COG0454	-acetyltransferase
CHH_RS00885	COG0840	transmembrane signaling receptor activity
CHH_RS00900	COG0314	molybdopterin synthase activity
CHH_RS00910	COG1293	RNA-binding protein homologous to eukaryotic snRNP
CHH_RS00915	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CHH_RS00940	COG0148	phosphopyruvate hydratase activity
CHH_RS00945	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CHH_RS00950	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
CHH_RS00980	COG0575	Belongs to the CDS family
CHH_RS00985	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CHH_RS01000	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CHH_RS01010	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CHH_RS01030	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CHH_RS01035	COG0602	queuosine metabolic process
CHH_RS01040	COG1979	alcohol dehydrogenase
CHH_RS01090	COG0450	alkyl hydroperoxide reductase
CHH_RS01095	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CHH_RS01100	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CHH_RS01115	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CHH_RS01130	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CHH_RS01140	COG0745	RESPONSE REGULATOR receiver
CHH_RS01150	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CHH_RS01160	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CHH_RS01165	COG0416	fatty acid biosynthetic process
CHH_RS01170	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CHH_RS01180	COG0105	UTP biosynthetic process
CHH_RS01190	COG1360	Flagellar Motor Protein
CHH_RS01195	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CHH_RS01200	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CHH_RS01200	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CHH_RS01230	COG1570	exodeoxyribonuclease VII activity
CHH_RS01250	COG1131	(ABC) transporter
CHH_RS01255	COG0842	Transport permease protein
CHH_RS01260	COG0842	Transport permease protein
CHH_RS01270	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CHH_RS01280	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CHH_RS01285	COG1766	The M ring may be actively involved in energy transduction
CHH_RS01290	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CHH_RS01305	COG0019	diaminopimelate decarboxylase activity
CHH_RS01320	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CHH_RS01325	COG4774	siderophore transport
CHH_RS01330	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CHH_RS01335	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CHH_RS01340	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CHH_RS01345	COG1120	ATPase activity
CHH_RS01355	COG0811	peptide transport
CHH_RS01385	COG0254	rRNA binding
CHH_RS01390	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CHH_RS01395	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CHH_RS01410	COG0436	Aminotransferase
CHH_RS01415	COG0460	homoserine dehydrogenase
CHH_RS01420	COG0792	nuclease activity
CHH_RS01425	COG3118	belongs to the thioredoxin family
CHH_RS01430	COG0492	ferredoxin-NADP+ reductase activity
CHH_RS01440	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CHH_RS01445	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CHH_RS01460	COG0140	phosphoribosyl-ATP diphosphatase activity
CHH_RS01460	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CHH_RS01480	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CHH_RS01490	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CHH_RS01520	COG0723	plastoquinol--plastocyanin reductase activity
CHH_RS01525	COG1279	arginine transmembrane transporter activity
CHH_RS01530	COG0445	tRNA wobble uridine modification
CHH_RS01540	COG0863	Belongs to the N(4) N(6)-methyltransferase family
CHH_RS01555	COG2194	sulfuric ester hydrolase activity
CHH_RS01585	COG0052	Belongs to the universal ribosomal protein uS2 family
CHH_RS01590	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CHH_RS01595	COG1136	(ABC) transporter
CHH_RS01600	COG1684	flagellar biosynthetic protein fliR
CHH_RS01615	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CHH_RS01620	COG0018	arginyl-trna synthetase
CHH_RS01625	COG0583	DNA-binding transcription factor activity
CHH_RS01630	COG2855	membrane
CHH_RS01635	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CHH_RS01640	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CHH_RS01645	COG0126	phosphoglycerate kinase activity
CHH_RS01650	COG0149	triose-phosphate isomerase activity
CHH_RS01655	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CHH_RS01675	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CHH_RS01695	COG0656	L-ascorbic acid biosynthetic process
CHH_RS01700	COG2217	Heavy metal translocating P-type atpase
CHH_RS01720	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CHH_RS01730	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CHH_RS01730	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
CHH_RS01735	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CHH_RS01740	COG0859	PFAM glycosyl transferase family 9
CHH_RS01760	COG0438	transferase activity, transferring glycosyl groups
CHH_RS01765	COG0859	PFAM glycosyl transferase family 9
CHH_RS01780	COG0726	polysaccharide deacetylase
CHH_RS01785	COG0859	PFAM glycosyl transferase family 9
CHH_RS01810	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CHH_RS01820	COG1793	dna ligase
CHH_RS01835	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CHH_RS01845	COG2244	polysaccharide biosynthetic process
CHH_RS01850	COG0438	transferase activity, transferring glycosyl groups
CHH_RS01860	COG0438	transferase activity, transferring glycosyl groups
CHH_RS01870	COG0438	transferase activity, transferring glycosyl groups
CHH_RS01875	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CHH_RS01880	COG0110	maltose O-acetyltransferase activity
CHH_RS01890	COG0166	Belongs to the GPI family
CHH_RS01895	COG0783	Belongs to the Dps family
CHH_RS01910	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CHH_RS01915	COG4106	trans-aconitate 2-methyltransferase activity
CHH_RS01935	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CHH_RS01960	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CHH_RS01985	COG3951	Flagellar rod assembly protein muramidase FlgJ
CHH_RS02015	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CHH_RS02020	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CHH_RS02050	COG0716	FMN binding
CHH_RS02055	COG0814	amino acid
CHH_RS02060	COG0217	transcriptional regulatory protein
CHH_RS02065	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CHH_RS02070	COG1301	dicarboxylic acid transport
CHH_RS02075	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CHH_RS02105	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CHH_RS02110	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CHH_RS02145	COG2217	Heavy metal translocating P-type atpase
CHH_RS02165	COG1053	succinate dehydrogenase
CHH_RS02170	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CHH_RS02185	COG1854	S-ribosylhomocysteine lyase activity
CHH_RS02190	COG1007	ATP synthesis coupled electron transport
CHH_RS02195	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHH_RS02200	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CHH_RS02205	COG0713	ATP synthesis coupled electron transport
CHH_RS02210	COG0839	Belongs to the complex I subunit 6 family
CHH_RS02215	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHH_RS02220	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CHH_RS02225	COG1034	ATP synthesis coupled electron transport
CHH_RS02230	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CHH_RS02240	COG0649	NAD binding
CHH_RS02245	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHH_RS02250	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHH_RS02255	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CHH_RS02270	COG4263	nitrous-oxide reductase activity
CHH_RS02285	COG0437	4 iron, 4 sulfur cluster binding
CHH_RS02300	COG0348	domain, Protein
CHH_RS02305	COG3842	ATPase activity
CHH_RS02325	COG0824	Thioesterase
CHH_RS02345	COG0004	ammonium transporteR
CHH_RS02350	COG0347	Belongs to the P(II) protein family
CHH_RS02355	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CHH_RS02360	COG0594	ribonuclease P activity
CHH_RS02370	COG0706	membrane insertase activity
CHH_RS02380	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CHH_RS02385	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CHH_RS02390	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CHH_RS02395	COG0138	bifunctional purine biosynthesis protein purh
CHH_RS02410	COG2151	metal-sulfur cluster biosynthetic enzyme
CHH_RS02415	COG0840	transmembrane signaling receptor activity
CHH_RS02440	COG0275	rRNA processing
CHH_RS02455	COG0849	cell division
CHH_RS02460	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CHH_RS02470	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CHH_RS02480	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CHH_RS02485	COG0653	protein targeting
CHH_RS02490	COG4591	ABC-type transport system involved in lipoprotein release permease component
CHH_RS02515	COG2252	PERMEase
CHH_RS02520	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CHH_RS02530	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CHH_RS02545	COG0745	RESPONSE REGULATOR receiver
CHH_RS02550	COG3301	Polysulphide reductase, NrfD
CHH_RS02555	COG0437	4 iron, 4 sulfur cluster binding
CHH_RS02560	COG0243	molybdopterin cofactor binding
CHH_RS02570	COG0425	Belongs to the sulfur carrier protein TusA family
CHH_RS02575	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CHH_RS02580	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CHH_RS02660	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CHH_RS02670	COG1058	Belongs to the CinA family
CHH_RS02670	COG1546	Belongs to the CinA family
CHH_RS02680	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CHH_RS02685	COG0154	amidase activity
CHH_RS02690	COG0517	IMP dehydrogenase activity
CHH_RS02690	COG0516	GMP reductase activity
CHH_RS02695	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CHH_RS02710	COG1999	signal sequence binding
CHH_RS02715	COG0772	Belongs to the SEDS family
CHH_RS02720	COG0564	pseudouridine synthase activity
CHH_RS02730	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CHH_RS02735	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CHH_RS02750	COG0528	UMP kinase activity
CHH_RS02755	COG1758	RNA polymerase activity
CHH_RS02765	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CHH_RS02775	COG0860	N-Acetylmuramoyl-L-alanine amidase
CHH_RS02780	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CHH_RS02780	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CHH_RS02790	COG0519	Catalyzes the synthesis of GMP from XMP
CHH_RS02795	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CHH_RS02800	COG0563	adenylate kinase activity
CHH_RS02805	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CHH_RS02815	COG0497	DNA recombination
CHH_RS02825	COG0084	hydrolase, TatD family'
CHH_RS02835	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CHH_RS02840	COG0131	Imidazoleglycerol-phosphate dehydratase
CHH_RS02860	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CHH_RS02875	COG0768	penicillin binding
CHH_RS02880	COG2257	FlhB HrpN YscU SpaS Family
CHH_RS02905	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CHH_RS02915	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CHH_RS02920	COG0681	Belongs to the peptidase S26 family
CHH_RS02925	COG1994	Peptidase M50
CHH_RS02930	COG0698	ribose 5-phosphate isomerase
CHH_RS02940	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CHH_RS02950	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CHH_RS02955	COG0012	GTP binding
CHH_RS02960	COG0243	molybdopterin cofactor binding
CHH_RS02965	COG0437	4 iron, 4 sulfur cluster binding
CHH_RS02970	COG0348	domain, Protein
CHH_RS02975	COG3043	anaerobic respiration
CHH_RS02995	COG0688	phosphatidylethanolamine metabolic process
CHH_RS03000	COG1408	metallophosphoesterase
CHH_RS03005	COG1114	Component of the transport system for branched-chain amino acids
CHH_RS03010	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CHH_RS03035	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CHH_RS03055	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CHH_RS03060	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CHH_RS03075	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CHH_RS03085	COG0642	Histidine kinase
CHH_RS03090	COG0745	RESPONSE REGULATOR receiver
CHH_RS03095	COG0484	heat shock protein binding
CHH_RS03100	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CHH_RS03105	COG0629	single-stranded DNA binding
CHH_RS03110	COG0360	Binds together with S18 to 16S ribosomal RNA
CHH_RS03120	COG0557	exoribonuclease II activity
CHH_RS03130	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CHH_RS03135	COG2861	carbohydrate metabolic process
CHH_RS03140	COG0758	DNA mediated transformation
CHH_RS03145	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CHH_RS03160	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CHH_RS03165	COG0805	protein transport
CHH_RS03170	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CHH_RS03175	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CHH_RS03180	COG0494	nUDIX hydrolase
CHH_RS03185	COG0527	aspartate kinase activity
CHH_RS03200	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CHH_RS03205	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CHH_RS03210	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CHH_RS03215	COG0196	riboflavin kinase activity
CHH_RS03220	COG2226	methyltransferase
CHH_RS03230	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CHH_RS03235	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CHH_RS03240	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CHH_RS03245	COG1959	2 iron, 2 sulfur cluster binding
CHH_RS03250	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CHH_RS03255	COG2404	hydrolase activity, acting on ester bonds
CHH_RS03275	COG1420	regulation of RNA biosynthetic process
CHH_RS03280	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CHH_RS03285	COG0443	Heat shock 70 kDa protein
CHH_RS03305	COG3706	GGDEF domain
CHH_RS03310	COG2203	Gaf domain
CHH_RS03310	COG2199	diguanylate cyclase activity
CHH_RS03325	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CHH_RS03330	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CHH_RS03335	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CHH_RS03340	COG1663	tetraacyldisaccharide 4'-kinase activity
CHH_RS03350	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CHH_RS03355	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CHH_RS03365	COG0500	methyltransferase
CHH_RS03370	COG2195	Cleaves the N-terminal amino acid of tripeptides
CHH_RS03395	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
CHH_RS03400	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CHH_RS03405	COG0577	efflux transmembrane transporter activity
CHH_RS03405	COG1136	(ABC) transporter
CHH_RS03410	COG1538	Outer membrane efflux protein
CHH_RS03420	COG0642	Histidine kinase
CHH_RS03425	COG0745	RESPONSE REGULATOR receiver
CHH_RS03435	COG0484	heat shock protein binding
CHH_RS03440	COG0789	Transcriptional regulator
CHH_RS03450	COG3263	regulation of cellular component size
CHH_RS03455	COG0730	response to heat
CHH_RS03460	COG0356	it plays a direct role in the translocation of protons across the membrane
CHH_RS03465	COG0352	thiamine-phosphate diphosphorylase activity
CHH_RS03470	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CHH_RS03475	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CHH_RS03490	COG2962	Rard protein
CHH_RS03495	COG1126	abc transporter atp-binding protein
CHH_RS03500	COG0765	amino acid transport
CHH_RS03505	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CHH_RS03510	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CHH_RS03515	COG1028	Short-chain dehydrogenase reductase Sdr
CHH_RS03520	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CHH_RS03525	COG0612	Peptidase, M16
CHH_RS03530	COG0167	dihydroorotate dehydrogenase activity
CHH_RS03535	COG1132	(ABC) transporter
CHH_RS03540	COG0215	cysteine-tRNA ligase activity
CHH_RS03545	COG0728	peptidoglycan biosynthetic process
CHH_RS03550	COG0513	Belongs to the DEAD box helicase family
CHH_RS03565	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CHH_RS03575	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CHH_RS03575	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CHH_RS03630	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CHH_RS03645	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CHH_RS03650	COG2201	protein-glutamate methylesterase activity
CHH_RS03660	COG0632	four-way junction helicase activity
CHH_RS03665	COG1181	Belongs to the D-alanine--D-alanine ligase family
CHH_RS03680	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CHH_RS03695	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CHH_RS03700	COG0280	phosphate acetyltransferase
CHH_RS03705	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
CHH_RS03710	COG0028	Belongs to the TPP enzyme family
CHH_RS03715	COG0440	acetolactate synthase activity
CHH_RS03725	COG0586	Pfam SNARE associated Golgi protein
CHH_RS03735	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CHH_RS03750	COG0745	RESPONSE REGULATOR receiver
CHH_RS03760	COG0243	molybdopterin cofactor binding
CHH_RS03775	COG0788	formyltetrahydrofolate deformylase activity
CHH_RS03870	COG0745	RESPONSE REGULATOR receiver
CHH_RS03875	COG0642	Histidine kinase
CHH_RS03880	COG2860	membrane
CHH_RS03885	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CHH_RS03890	COG0179	Fumarylacetoacetate (FAA) hydrolase
CHH_RS03895	COG1580	Controls the rotational direction of flagella during chemotaxis
CHH_RS03900	COG0736	holo-[acyl-carrier-protein] synthase activity
CHH_RS03905	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CHH_RS03920	COG1151	hydroxylamine reductase activity
CHH_RS03940	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CHH_RS03975	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CHH_RS03980	COG1464	Belongs to the NlpA lipoprotein family
CHH_RS03985	COG0351	phosphomethylpyrimidine kinase
CHH_RS03990	COG2011	ABC-type metal ion transport system permease component
CHH_RS03995	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CHH_RS04015	COG0114	fumarate hydratase activity
CHH_RS04060	COG0326	Molecular chaperone. Has ATPase activity
CHH_RS04070	COG3041	Addiction module toxin RelE StbE family
CHH_RS04120	COG0582	viral genome integration into host DNA
CHH_RS04140	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CHH_RS04145	COG0492	ferredoxin-NADP+ reductase activity
CHH_RS04155	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CHH_RS04160	COG0727	PFAM Uncharacterised protein family (UPF0153)
CHH_RS04170	COG0134	indole-3-glycerol-phosphate synthase activity
CHH_RS04180	COG3022	response to hydroperoxide
CHH_RS04185	COG0776	regulation of translation
CHH_RS04195	COG2814	Major facilitator Superfamily
CHH_RS04205	COG0439	Biotin carboxylase
CHH_RS04225	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CHH_RS04230	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CHH_RS04240	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CHH_RS04245	COG1196	nuclear chromosome segregation
CHH_RS04245	COG1674	ftsk spoiiie
CHH_RS04260	COG0142	geranyltranstransferase activity
CHH_RS04265	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CHH_RS04270	COG0442	prolyl-tRNA aminoacylation
CHH_RS04280	COG0181	hydroxymethylbilane synthase activity
CHH_RS04290	COG1696	Membrane protein involved in D-alanine export
CHH_RS04295	COG1295	ribonuclease BN
CHH_RS04300	COG0277	FAD linked oxidase domain protein
CHH_RS04310	COG0739	heme binding
CHH_RS04315	COG2239	Acts as a magnesium transporter
CHH_RS04330	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CHH_RS04335	COG0459	protein refolding
CHH_RS04345	COG0252	asparaginase activity
CHH_RS04365	COG0066	3-isopropylmalate dehydratase activity
CHH_RS04370	COG0473	3-isopropylmalate dehydrogenase activity
CHH_RS04390	COG0248	Ppx GppA phosphatase
CHH_RS04395	COG1610	YqeY-like protein
CHH_RS04405	COG1459	type II secretion system
CHH_RS04450	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CHH_RS04455	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CHH_RS04460	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CHH_RS04465	COG0359	binds to the 23S rRNA
CHH_RS04470	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CHH_RS04470	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CHH_RS04480	COG1049	propionate catabolic process, 2-methylcitrate cycle
CHH_RS04485	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CHH_RS04500	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CHH_RS04505	COG0305	Participates in initiation and elongation during chromosome replication
CHH_RS04515	COG0343	queuine tRNA-ribosyltransferase activity
CHH_RS04535	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CHH_RS04560	COG0039	L-malate dehydrogenase activity
CHH_RS04570	COG0674	pyruvate-flavodoxin oxidoreductase activity
CHH_RS04570	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CHH_RS04575	COG3962	Belongs to the TPP enzyme family
CHH_RS04585	COG0716	FMN binding
CHH_RS04595	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CHH_RS04600	COG0750	zinc metalloprotease
CHH_RS04605	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CHH_RS04615	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CHH_RS04645	COG0840	transmembrane signaling receptor activity
CHH_RS04650	COG0556	nucleotide-excision repair
CHH_RS04655	COG0471	metal ion transport
CHH_RS04665	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CHH_RS04670	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CHH_RS04685	COG2833	Protein of unknown function (DUF455)
CHH_RS04700	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CHH_RS04705	COG0303	'Molybdopterin
CHH_RS04720	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CHH_RS04725	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CHH_RS04730	COG0124	histidyl-tRNA synthetase
CHH_RS04735	COG1166	arginine decarboxylase activity
CHH_RS04740	COG1045	serine acetyltransferase
CHH_RS04745	COG0436	Aminotransferase
CHH_RS04750	COG1442	glycosyl transferase family 8
CHH_RS04750	COG1216	Glycosyl transferase, family 2
CHH_RS04755	COG0521	Mo-molybdopterin cofactor biosynthetic process
CHH_RS04760	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CHH_RS04765	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CHH_RS04775	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CHH_RS04780	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CHH_RS04785	COG1137	ATPase activity
CHH_RS04795	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CHH_RS04800	COG0776	regulation of translation
CHH_RS04805	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CHH_RS04810	COG0772	Belongs to the SEDS family
CHH_RS04815	COG0582	viral genome integration into host DNA
CHH_RS04820	COG0137	argininosuccinate synthase activity
CHH_RS04830	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CHH_RS04840	COG0375	protein maturation
CHH_RS04845	COG0309	Hydrogenase expression formation protein (HypE)
CHH_RS04855	COG0298	carbon dioxide binding
CHH_RS04865	COG2310	stress, protein
CHH_RS04885	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CHH_RS04895	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CHH_RS04900	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CHH_RS04905	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CHH_RS04910	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CHH_RS04915	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CHH_RS04920	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CHH_RS04930	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CHH_RS04935	COG0745	RESPONSE REGULATOR receiver
CHH_RS04940	COG4191	Histidine kinase
CHH_RS04945	COG0484	heat shock protein binding
CHH_RS04950	COG0545	Peptidyl-prolyl cis-trans isomerase
CHH_RS04955	COG0437	4 iron, 4 sulfur cluster binding
CHH_RS04960	COG3301	Polysulphide reductase, NrfD
CHH_RS04965	COG1333	cytochrome c biogenesis protein
CHH_RS04965	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CHH_RS04990	COG1136	(ABC) transporter
CHH_RS05005	COG0542	response to heat
CHH_RS05020	COG1131	(ABC) transporter
CHH_RS05025	COG4771	TonB-dependent receptor
CHH_RS05030	COG0793	Belongs to the peptidase S41A family
CHH_RS05035	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CHH_RS05040	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CHH_RS05045	COG0047	phosphoribosylformylglycinamidine synthase activity
CHH_RS05055	COG0204	Acyl-transferase
CHH_RS05060	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CHH_RS05105	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CHH_RS05115	COG1338	Plays a role in the flagellum-specific transport system
CHH_RS05120	COG0824	Thioesterase
CHH_RS05150	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CHH_RS05180	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CHH_RS05185	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CHH_RS05195	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CHH_RS05200	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CHH_RS05210	COG0101	tRNA pseudouridine synthase activity
CHH_RS05215	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CHH_RS05225	COG3111	PFAM Bacterial OB fold (BOF) protein
CHH_RS05230	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CHH_RS05235	COG3421	Type III restriction
CHH_RS05255	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CHH_RS05265	COG0739	heme binding
CHH_RS05285	COG0495	leucyl-tRNA aminoacylation
CHH_RS05295	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CHH_RS05300	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CHH_RS05305	COG1862	Preprotein translocase
CHH_RS05310	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CHH_RS05315	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CHH_RS05320	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CHH_RS05325	COG1121	(ABC) transporter
CHH_RS05335	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CHH_RS05340	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
CHH_RS05360	COG0210	DNA helicase
CHH_RS05380	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CHH_RS05390	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CHH_RS05395	COG0542	response to heat
CHH_RS05410	COG1815	bacterial-type flagellum-dependent cell motility
CHH_RS05430	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CHH_RS05435	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CHH_RS05460	COG0335	large ribosomal subunit rRNA binding
CHH_RS05465	COG0336	Belongs to the RNA methyltransferase TrmD family
CHH_RS05470	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CHH_RS05480	COG0228	four-way junction DNA binding
CHH_RS05485	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CHH_RS05535	COG0310	cobalt ion transport
CHH_RS05545	COG0564	pseudouridine synthase activity
CHH_RS05550	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CHH_RS05550	COG1519	Transferase
CHH_RS05560	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CHH_RS05565	COG0752	glycyl-tRNA synthetase alpha subunit
CHH_RS05575	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CHH_RS05580	COG0826	peptidase U32
CHH_RS05590	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CHH_RS05595	COG0174	glutamine synthetase
CHH_RS05610	COG0753	catalase activity
CHH_RS05625	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CHH_RS05630	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CHH_RS05635	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CHH_RS05640	COG0612	Peptidase, M16
CHH_RS05655	COG0579	oxidoreductase
CHH_RS05660	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CHH_RS05670	COG2200	EAL domain
CHH_RS05670	COG3287	FIST C domain
CHH_RS05670	COG2199	diguanylate cyclase activity
CHH_RS05675	COG1193	negative regulation of DNA recombination
CHH_RS05730	COG0501	Belongs to the peptidase M48B family
CHH_RS05735	COG0733	neurotransmitter:sodium symporter activity
CHH_RS05740	COG0488	(ABC) transporter
CHH_RS05745	COG0477	Major facilitator Superfamily
CHH_RS05750	COG0659	secondary active sulfate transmembrane transporter activity
CHH_RS05755	COG0745	RESPONSE REGULATOR receiver
CHH_RS05760	COG2205	protein histidine kinase activity
CHH_RS05765	COG0534	Mate efflux family protein
CHH_RS05775	COG0786	glutamate:sodium symporter activity
CHH_RS05790	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CHH_RS05795	COG2957	Belongs to the agmatine deiminase family
CHH_RS05805	COG0577	efflux transmembrane transporter activity
CHH_RS05805	COG1136	(ABC) transporter
CHH_RS05830	COG0672	)-iron permease
CHH_RS05840	COG4786	Flagellar basal body rod
CHH_RS05845	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CHH_RS05855	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CHH_RS05875	COG0191	fructose-bisphosphate aldolase activity
CHH_RS05880	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CHH_RS05885	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CHH_RS05890	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CHH_RS05895	COG1518	maintenance of DNA repeat elements
CHH_RS05910	COG1203	CRISPR-associated helicase, Cas3
CHH_RS05935	COG1596	polysaccharide export
CHH_RS05935	COG1555	photosystem II stabilization
CHH_RS05965	COG0586	Pfam SNARE associated Golgi protein
CHH_RS05975	COG1418	mRNA catabolic process
CHH_RS05985	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CHH_RS05990	COG0552	protein localization to endoplasmic reticulum
CHH_RS05995	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CHH_RS06040	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CHH_RS06050	COG2255	four-way junction helicase activity
CHH_RS06055	COG0628	permease
CHH_RS06060	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CHH_RS06065	COG1127	ABC transporter
CHH_RS06080	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CHH_RS06130	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CHH_RS06135	COG0765	amino acid transport
CHH_RS06140	COG1126	abc transporter atp-binding protein
CHH_RS06155	COG0352	thiamine-phosphate diphosphorylase activity
CHH_RS06160	COG1968	undecaprenyl-diphosphatase activity
CHH_RS06175	COG0642	Histidine kinase
CHH_RS06190	COG0587	DNA-directed DNA polymerase activity
CHH_RS06195	COG0724	RNA recognition motif
CHH_RS06200	COG3005	denitrification pathway
CHH_RS06210	COG0693	protein deglycase activity
CHH_RS06215	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CHH_RS06220	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CHH_RS06230	COG0539	negative regulation of cytoplasmic translation
CHH_RS06230	COG1185	polyribonucleotide nucleotidyltransferase activity
CHH_RS06235	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CHH_RS06240	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CHH_RS06250	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CHH_RS06255	COG0537	adenosine 5'-monophosphoramidase activity
CHH_RS06265	COG1185	polyribonucleotide nucleotidyltransferase activity
CHH_RS06300	COG0519	Catalyzes the synthesis of GMP from XMP
CHH_RS06340	COG2197	response regulator
CHH_RS06380	COG1607	acyl-coa hydrolase
CHH_RS06395	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CHH_RS06440	COG2207	Transcriptional regulator
CHH_RS06445	COG1979	alcohol dehydrogenase
CHH_RS06450	COG0733	neurotransmitter:sodium symporter activity
CHH_RS06455	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CHH_RS06470	COG0511	ligase activity, forming carbon-carbon bonds
CHH_RS06475	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
CHH_RS06480	COG0165	Argininosuccinate lyase
CHH_RS06485	COG0840	transmembrane signaling receptor activity
CHH_RS06495	COG1230	cation diffusion facilitator family transporter
CHH_RS06505	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CHH_RS06520	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CHH_RS06525	COG0049	tRNA binding
CHH_RS06530	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CHH_RS06535	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CHH_RS06540	COG0085	RNA polymerase activity
CHH_RS06545	COG0222	ribosome binding
CHH_RS06550	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CHH_RS06555	COG0081	regulation of translation
CHH_RS06560	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CHH_RS06565	COG0250	Participates in transcription elongation, termination and antitermination
CHH_RS06580	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CHH_RS06585	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CHH_RS06615	COG0284	orotidine-5'-phosphate decarboxylase activity
CHH_RS06620	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CHH_RS06625	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CHH_RS06630	COG2076	Multidrug Resistance protein
CHH_RS06640	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CHH_RS06645	COG0697	spore germination
CHH_RS06650	COG1160	GTP binding
CHH_RS06655	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CHH_RS06665	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CHH_RS06675	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CHH_RS06680	COG1183	phosphatidylcholine synthase activity
CHH_RS06690	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CHH_RS06695	COG2264	protein methyltransferase activity
CHH_RS06700	COG0745	RESPONSE REGULATOR receiver
CHH_RS06705	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CHH_RS06710	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CHH_RS06720	COG1086	Polysaccharide biosynthesis protein
CHH_RS06725	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CHH_RS06735	COG2423	ornithine cyclodeaminase activity
CHH_RS06740	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CHH_RS06745	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CHH_RS06750	COG0019	diaminopimelate decarboxylase activity
CHH_RS06770	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CHH_RS06775	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CHH_RS06795	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CHH_RS06800	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CHH_RS06805	COG0825	malonyl-CoA metabolic process
CHH_RS06820	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CHH_RS06825	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CHH_RS06830	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CHH_RS06835	COG0037	tRNA processing
CHH_RS06855	COG2121	Domain of unknown function (DUF374)
CHH_RS06860	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CHH_RS06870	COG0195	Participates in both transcription termination and antitermination
CHH_RS06880	COG1739	Uncharacterized protein family UPF0029
CHH_RS06890	COG2022	thiamine diphosphate biosynthetic process
CHH_RS06905	COG1966	Carbon starvation protein
CHH_RS06920	COG0488	(ABC) transporter
CHH_RS06925	COG2171	N-acyltransferase activity
CHH_RS06930	COG0489	protein tyrosine kinase activity
CHH_RS06935	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CHH_RS06940	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CHH_RS06940	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CHH_RS06945	COG0745	RESPONSE REGULATOR receiver
CHH_RS06955	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CHH_RS06965	COG1333	cytochrome c biogenesis protein
CHH_RS06965	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CHH_RS06990	COG0683	leucine binding
CHH_RS06995	COG2010	Cytochrome c
CHH_RS07000	COG4773	Receptor
CHH_RS07005	COG4773	Receptor
CHH_RS07020	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CHH_RS07020	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CHH_RS07020	COG0674	pyruvate-flavodoxin oxidoreductase activity
CHH_RS07020	COG1013	pyruvate-flavodoxin oxidoreductase activity
CHH_RS07030	COG0668	transmembrane transport
CHH_RS07040	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CHH_RS07045	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CHH_RS07050	COG1074	ATP-dependent DNA helicase activity
CHH_RS07090	COG3278	Belongs to the heme-copper respiratory oxidase family
CHH_RS07095	COG0745	RESPONSE REGULATOR receiver
CHH_RS07100	COG0840	transmembrane signaling receptor activity
CHH_RS07110	COG0505	Belongs to the CarA family
CHH_RS07130	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CHH_RS07135	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CHH_RS07170	COG3585	molybdate ion transport
CHH_RS07205	COG1776	CheC inhibitor of MCP methylation
CHH_RS07205	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CHH_RS07220	COG0133	tryptophan synthase activity
CHH_RS07230	COG0512	Glutamine amidotransferase of anthranilate synthase
CHH_RS07230	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CHH_RS07235	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CHH_RS07240	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CHH_RS07245	COG0471	metal ion transport
CHH_RS07250	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CHH_RS07260	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CHH_RS07265	COG0778	Nitroreductase
CHH_RS07270	COG0709	Synthesizes selenophosphate from selenide and ATP
CHH_RS07285	COG0193	aminoacyl-tRNA hydrolase activity
CHH_RS07290	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CHH_RS07300	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CHH_RS07310	COG0835	chemotaxis
CHH_RS07315	COG0784	Response regulator, receiver
CHH_RS07315	COG0643	Histidine kinase
CHH_RS07315	COG2198	Histidine kinase
CHH_RS07320	COG0835	chemotaxis
CHH_RS07320	COG0784	Response regulator, receiver
CHH_RS07335	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CHH_RS07345	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CHH_RS07350	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CHH_RS07370	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CHH_RS07380	COG1077	Cell shape determining protein MreB Mrl
CHH_RS07385	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CHH_RS07390	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CHH_RS07395	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CHH_RS07410	COG0731	radical SAM domain protein
CHH_RS07415	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CHH_RS07425	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CHH_RS07430	COG2204	response regulator
CHH_RS07470	COG4310	Domain of unknown function (DUF2172)
CHH_RS07490	COG1942	4-Oxalocrotonate Tautomerase
CHH_RS07495	COG0481	GTPase activity
CHH_RS07500	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CHH_RS07505	COG0540	Belongs to the ATCase OTCase family
CHH_RS07525	COG0482	sulfurtransferase activity
CHH_RS07535	COG1611	Belongs to the LOG family
CHH_RS07540	COG0493	'glutamate synthase
CHH_RS07545	COG0070	glutamate synthase
CHH_RS07545	COG0067	glutamate synthase
CHH_RS07545	COG0069	glutamate synthase activity
CHH_RS07550	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CHH_RS07550	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CHH_RS07560	COG0779	Required for maturation of 30S ribosomal subunits
CHH_RS07570	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CHH_RS07580	COG0083	homoserine kinase activity
CHH_RS07590	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CHH_RS07595	COG0384	phenazine biosynthesis protein PhzF
CHH_RS07605	COG0287	Prephenate dehydrogenase
CHH_RS07610	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CHH_RS07615	COG2258	MOSC domain
CHH_RS07630	COG0616	signal peptide processing
CHH_RS07635	COG0402	S-adenosylhomocysteine deaminase activity
CHH_RS07640	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CHH_RS07645	COG0006	proline dipeptidase activity
CHH_RS07650	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CHH_RS07655	COG1419	protein localization to endoplasmic reticulum
CHH_RS07660	COG0455	bacterial-type flagellum organization
CHH_RS07670	COG1191	sigma factor activity
CHH_RS07675	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CHH_RS07680	COG1776	CheC inhibitor of MCP methylation
CHH_RS07680	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CHH_RS07685	COG0037	tRNA processing
CHH_RS07690	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CHH_RS07695	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CHH_RS07700	COG1047	Peptidyl-prolyl cis-trans
CHH_RS07710	COG2885	chlorophyll binding
CHH_RS07715	COG0823	Involved in the tonB-independent uptake of proteins
CHH_RS07725	COG0848	biopolymer transport protein
CHH_RS07730	COG0811	peptide transport
CHH_RS07735	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CHH_RS07740	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CHH_RS07745	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CHH_RS07750	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CHH_RS07755	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CHH_RS07765	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CHH_RS07770	COG1475	DNA binding
CHH_RS07775	COG1192	Involved in chromosome partitioning
CHH_RS07780	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CHH_RS07780	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CHH_RS07785	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CHH_RS07795	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CHH_RS07800	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CHH_RS07805	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CHH_RS07820	COG1858	cytochrome C peroxidase
CHH_RS07825	COG0437	4 iron, 4 sulfur cluster binding
CHH_RS07830	COG3383	formate dehydrogenase (NAD+) activity
CHH_RS07835	COG0243	molybdopterin cofactor binding
CHH_RS07855	COG1921	L-seryl-tRNASec selenium transferase activity
CHH_RS07870	COG1083	cytidylyl-transferase
CHH_RS07875	COG1181	Belongs to the D-alanine--D-alanine ligase family
CHH_RS07880	COG1181	Belongs to the D-alanine--D-alanine ligase family
CHH_RS07885	COG0529	Catalyzes the synthesis of activated sulfate
CHH_RS07910	COG3980	spore coat polysaccharide biosynthesis protein
CHH_RS07930	COG2089	acid synthase
CHH_RS07935	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CHH_RS07940	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
CHH_RS07945	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CHH_RS07955	COG0281	malic enzyme
CHH_RS07955	COG0280	phosphate acetyltransferase
CHH_RS07960	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CHH_RS07980	COG4662	Binding-protein-dependent transport system inner membrane component
CHH_RS07990	COG0717	Belongs to the dCTP deaminase family
CHH_RS07995	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CHH_RS08005	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CHH_RS08015	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CHH_RS08025	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CHH_RS08030	COG0113	porphobilinogen synthase activity
CHH_RS08035	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CHH_RS08040	COG0357	Ribosomal RNA small subunit methyltransferase G
CHH_RS08055	COG0501	Belongs to the peptidase M48B family
CHH_RS08060	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CHH_RS08075	COG2847	Copper chaperone PCu(A)C
CHH_RS08080	COG1086	Polysaccharide biosynthesis protein
CHH_RS08085	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CHH_RS08090	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CHH_RS08105	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CHH_RS08110	COG1027	Aspartate ammonia-lyase
CHH_RS08120	COG0628	permease
CHH_RS08125	COG0730	response to heat
CHH_RS08140	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
CHH_RS08150	COG0318	PFAM AMP-dependent synthetase and ligase
CHH_RS08165	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CHH_RS08175	COG1666	GTP binding
CHH_RS08180	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CHH_RS08185	COG0163	prenyltransferase activity
CHH_RS08190	COG0754	glutathionylspermidine amidase activity
CHH_RS08215	COG4771	TonB-dependent receptor
CHH_RS08220	COG0811	peptide transport
CHH_RS08225	COG0848	biopolymer transport protein
CHH_RS08235	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CHH_RS08285	COG0861	Integral membrane protein TerC family
CHH_RS08290	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CHH_RS08295	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CHH_RS08295	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CHH_RS08300	COG0606	chelatase, subunit chli
CHH_RS08305	COG0242	peptide deformylase activity
CHH_RS08315	COG0740	serine-type endopeptidase activity
CHH_RS08320	COG0544	peptidyl-prolyl cis-trans isomerase activity
CHH_RS08330	COG1157	protein secretion by the type III secretion system
CHH_RS08365	COG2703	oxygen carrier activity
CHH_RS08370	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CHH_RS08375	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CHH_RS08395	COG1981	membrane
CHH_RS08405	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CHH_RS08410	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CHH_RS08415	COG0268	Binds directly to 16S ribosomal RNA
CHH_RS08420	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CHH_RS08440	COG0708	Exodeoxyribonuclease III
CHH_RS08445	COG2194	sulfuric ester hydrolase activity
CHH_RS08460	COG1971	Probably functions as a manganese efflux pump
CHH_RS08470	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CHH_RS08475	COG1121	(ABC) transporter
CHH_RS08485	COG0803	Belongs to the bacterial solute-binding protein 9 family
CHH_RS08495	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CHH_RS08500	COG1858	cytochrome C peroxidase
CHH_RS08505	COG3300	MHYT domain
CHH_RS08505	COG5001	Diguanylate cyclase
CHH_RS08510	COG0288	reversible hydration of carbon dioxide
CHH_RS08515	COG0668	transmembrane transport
CHH_RS08520	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CHH_RS08525	COG0571	ribonuclease III activity
CHH_RS08540	COG0358	DNA primase activity
CHH_RS08570	COG0840	transmembrane signaling receptor activity
CHH_RS08580	COG2056	Na+-H+ antiporter family
CHH_RS08585	COG0814	amino acid
CHH_RS08590	COG0129	dihydroxy-acid dehydratase activity
CHH_RS08600	COG0504	CTP synthase activity
CHH_RS08605	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CHH_RS08610	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CHH_RS08615	COG0748	coenzyme F420 binding
CHH_RS08630	COG1749	Flagellar hook protein flgE
CHH_RS08640	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CHH_RS08645	COG0237	dephospho-CoA kinase activity
CHH_RS08655	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CHH_RS08660	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CHH_RS08660	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CHH_RS08665	COG0697	spore germination
CHH_RS08680	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CHH_RS08685	COG0233	cytoplasmic translational termination
CHH_RS08695	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CHH_RS08700	COG0670	Belongs to the BI1 family
CHH_RS08795	COG0582	viral genome integration into host DNA
CHH_RS08825	COG2249	NAD(P)H dehydrogenase (quinone) activity
CHH_RS08835	COG0300	oxidoreductase activity
CHH_RS08850	COG0656	L-ascorbic acid biosynthetic process
CHH_RS08855	COG0655	NAD(P)H dehydrogenase (quinone) activity
CHH_RS08860	COG0789	Transcriptional regulator
CHH_RS08890	COG0778	Nitroreductase
CHH_RS08905	COG1187	pseudouridine synthase activity
CHH_RS08910	COG0517	IMP dehydrogenase activity
CHH_RS08910	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CHH_RS08920	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CHH_RS08925	COG2814	Major facilitator Superfamily
CHH_RS08930	COG0107	imidazoleglycerol-phosphate synthase activity
CHH_RS08940	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CHH_RS08950	COG0564	pseudouridine synthase activity
CHH_RS08955	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CHH_RS08960	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CHH_RS08965	COG0833	amino acid
CHH_RS08970	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group