RB95_RS00130	SM00382	ATPases associated with a variety of cellular activities
RB95_RS00130	SM00962	SRP54-type protein, GTPase domain
RB95_RS00225	SM00419	helix_turn_helix, cAMP Regulatory protein
RB95_RS00240	SM00986	Uracil DNA glycosylase superfamily
RB95_RS00240	SM00987	UreE urease accessory protein, C-terminal domain 
RB95_RS00315	SM00470	ParB-like nuclease domain
RB95_RS00345	SM00382	ATPases associated with a variety of cellular activities
RB95_RS00390	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
RB95_RS00520	SM00382	ATPases associated with a variety of cellular activities
RB95_RS00585	SM00967	RNA 2'-O ribose methyltransferase substrate binding
RB95_RS00625	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS00675	SM00382	ATPases associated with a variety of cellular activities
RB95_RS00700	SM00116	Domain in cystathionine beta-synthase and other proteins.
RB95_RS00700	SM01091	Transporter associated domain
RB95_RS00760	SM00382	ATPases associated with a variety of cellular activities
RB95_RS00775	SM00382	ATPases associated with a variety of cellular activities
RB95_RS00805	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RB95_RS00835	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RB95_RS00900	SM00947	Carbonic anhydrase
RB95_RS00940	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RB95_RS00940	SM01204	RB95_RS00940
RB95_RS01305	SM00382	ATPases associated with a variety of cellular activities
RB95_RS01305	SM01086	C-terminal, D2-small domain, of ClpB protein
RB95_RS01325	SM00363	S4 RNA-binding domain
RB95_RS01335	SM00382	ATPases associated with a variety of cellular activities
RB95_RS01370	SM00487	DEAD-like helicases superfamily
RB95_RS01370	SM00490	helicase superfamily c-terminal domain
RB95_RS01390	SM00487	DEAD-like helicases superfamily
RB95_RS01390	SM00490	helicase superfamily c-terminal domain
RB95_RS01450	SM00244	prohibitin homologues
RB95_RS01485	SM00382	ATPases associated with a variety of cellular activities
RB95_RS01485	SM00994	ClpX C4-type zinc finger
RB95_RS01485	SM01086	C-terminal, D2-small domain, of ClpB protein
RB95_RS01500	SM00851	MGS-like domain
RB95_RS01500	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
RB95_RS01520	SM00260	Two component signalling adaptor domain
RB95_RS01525	SM00073	Histidine Phosphotransfer domain
RB95_RS01525	SM00260	Two component signalling adaptor domain
RB95_RS01525	SM00387	Histidine kinase-like ATPases
RB95_RS01525	SM00448	cheY-homologous receiver domain
RB95_RS01525	SM01231	RB95_RS01525
RB95_RS01530	SM00260	Two component signalling adaptor domain
RB95_RS01530	SM00448	cheY-homologous receiver domain
RB95_RS01575	SM00382	ATPases associated with a variety of cellular activities
RB95_RS01655	SM00830	Chorismate mutase type II
RB95_RS01680	SM00861	Transketolase, pyrimidine binding domain
RB95_RS01735	SM00562	RB95_RS01735
RB95_RS01765	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
RB95_RS01765	SM00474	3'-5' exonuclease
RB95_RS01765	SM00475	5'-3' exonuclease
RB95_RS01765	SM00479	RB95_RS01765
RB95_RS01765	SM00482	DNA polymerase A domain
RB95_RS01850	SM00448	cheY-homologous receiver domain
RB95_RS01850	SM00862	Transcriptional regulatory protein, C terminal
RB95_RS01855	SM00905	Dihydroneopterin aldolase
RB95_RS01860	SM01207	RB95_RS01860
RB95_RS01885	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS01955	SM00382	ATPases associated with a variety of cellular activities
RB95_RS01970	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
RB95_RS02015	SM00028	Tetratricopeptide repeats
RB95_RS02130	SM00671	Sel1-like repeats.
RB95_RS02160	SM00867	YceI-like domain 
RB95_RS02190	SM00382	ATPases associated with a variety of cellular activities
RB95_RS02245	SM00822	RB95_RS02245
RB95_RS02280	SM00825	Beta-ketoacyl synthase
RB95_RS02300	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RB95_RS02320	SM00479	RB95_RS02320
RB95_RS02350	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS02360	SM00316	Ribosomal protein S1-like RNA-binding domain
RB95_RS02380	SM00487	DEAD-like helicases superfamily
RB95_RS02380	SM00490	helicase superfamily c-terminal domain
RB95_RS02390	SM00100	Cyclic nucleotide-monophosphate binding domain
RB95_RS02405	SM00382	ATPases associated with a variety of cellular activities
RB95_RS02450	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
RB95_RS02450	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
RB95_RS02455	SM00649	Ribosomal protein L11/L12
RB95_RS02480	SM00663	RNA polymerase I subunit A N-terminus
RB95_RS02495	SM00838	Elongation factor G C-terminus
RB95_RS02495	SM00889	Elongation factor G, domain IV
RB95_RS02535	SM00450	Rhodanese Homology Domain
RB95_RS02555	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RB95_RS02570	SM00382	ATPases associated with a variety of cellular activities
RB95_RS02570	SM01086	C-terminal, D2-small domain, of ClpB protein
RB95_RS02580	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RB95_RS02580	SM00245	tail specific protease
RB95_RS02595	SM01211	RB95_RS02595
RB95_RS02605	SM00563	Phosphate acyltransferases
RB95_RS02615	SM00387	Histidine kinase-like ATPases
RB95_RS02620	SM00450	Rhodanese Homology Domain
RB95_RS02680	SM00881	CoA binding domain
RB95_RS02770	SM00841	Elongation factor P, C-terminal
RB95_RS02770	SM01185	RB95_RS02770
RB95_RS02825	SM00382	ATPases associated with a variety of cellular activities
RB95_RS02885	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS02915	SM00292	breast cancer carboxy-terminal domain
RB95_RS02915	SM00532	Ligase N family
RB95_RS02930	SM00904	Riboflavin kinase
RB95_RS02955	SM00477	DNA/RNA non-specific endonuclease
RB95_RS02955	SM00892	DNA/RNA non-specific endonuclease
RB95_RS02960	SM00478	endonuclease III
RB95_RS02960	SM00525	RB95_RS02960
RB95_RS03020	SM00382	ATPases associated with a variety of cellular activities
RB95_RS03065	SM00382	ATPases associated with a variety of cellular activities
RB95_RS03120	SM00955	RB95_RS03120
RB95_RS03140	SM00732	Likely ribonuclease with RNase H fold.
RB95_RS03180	SM00267	diguanylate cyclase
RB95_RS03180	SM00448	cheY-homologous receiver domain
RB95_RS03190	SM00257	Lysin motif
RB95_RS03295	SM00842	Cell division protein FtsA
RB95_RS03300	SM00864	Tubulin/FtsZ family, GTPase domain
RB95_RS03300	SM00865	Tubulin/FtsZ family, C-terminal domain
RB95_RS03315	SM01230	RB95_RS03315
RB95_RS03330	SM01001	AIR carboxylase
RB95_RS03365	SM00382	ATPases associated with a variety of cellular activities
RB95_RS03365	SM00962	SRP54-type protein, GTPase domain
RB95_RS03365	SM00963	SRP54-type protein, helical bundle domain
RB95_RS03395	SM00095	Transthyretin
RB95_RS03410	SM00481	DNA polymerase alpha chain like domain
RB95_RS03445	SM00852	Probable molybdopterin binding domain
RB95_RS03490	SM00062	Bacterial periplasmic substrate-binding proteins
RB95_RS03505	SM00912	haemagglutination activity domain
RB95_RS03635	SM00382	ATPases associated with a variety of cellular activities
RB95_RS03635	SM00930	RB95_RS03635
RB95_RS03665	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RB95_RS03730	SM00387	Histidine kinase-like ATPases
RB95_RS03730	SM00388	His Kinase A (phosphoacceptor) domain
RB95_RS03755	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RB95_RS03775	SM00382	ATPases associated with a variety of cellular activities
RB95_RS03790	SM01130	RB95_RS03790
RB95_RS03805	SM00849	Metallo-beta-lactamase superfamily
RB95_RS03835	SM00062	Bacterial periplasmic substrate-binding proteins
RB95_RS03835	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
RB95_RS03885	SM00881	CoA binding domain
RB95_RS03910	SM00248	ankyrin repeats
RB95_RS04025	SM00852	Probable molybdopterin binding domain
RB95_RS04120	SM01387	RB95_RS04120
RB95_RS04125	SM00843	RB95_RS04125
RB95_RS04145	SM00382	ATPases associated with a variety of cellular activities
RB95_RS04150	SM00387	Histidine kinase-like ATPases
RB95_RS04150	SM00388	His Kinase A (phosphoacceptor) domain
RB95_RS04155	SM00448	cheY-homologous receiver domain
RB95_RS04155	SM00862	Transcriptional regulatory protein, C terminal
RB95_RS04170	SM00316	Ribosomal protein S1-like RNA-binding domain
RB95_RS04185	SM00873	B3/4 domain
RB95_RS04185	SM00874	tRNA synthetase B5 domain
RB95_RS04185	SM00896	Ferredoxin-fold anticodon binding domain
RB95_RS04215	SM00382	ATPases associated with a variety of cellular activities
RB95_RS04230	SM01005	Alanine racemase, C-terminal domain
RB95_RS04270	SM00411	bacterial (prokaryotic) histone like domain
RB95_RS04295	SM01400	RB95_RS04295
RB95_RS04310	SM00062	Bacterial periplasmic substrate-binding proteins
RB95_RS04315	SM00382	ATPases associated with a variety of cellular activities
RB95_RS04320	SM00138	Methyltransferase, chemotaxis proteins 
RB95_RS04430	SM00563	Phosphate acyltransferases
RB95_RS04485	SM00957	SecA DEAD-like domain
RB95_RS04485	SM00958	SecA preprotein cross-linking domain
RB95_RS04500	SM00382	ATPases associated with a variety of cellular activities
RB95_RS04530	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RB95_RS04530	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RB95_RS04535	SM00798	AICARFT/IMPCHase bienzyme
RB95_RS04535	SM00851	MGS-like domain
RB95_RS04540	SM00271	DnaJ molecular chaperone homology domain
RB95_RS04555	SM01245	RB95_RS04555
RB95_RS04565	SM01234	RB95_RS04565
RB95_RS04605	SM00912	haemagglutination activity domain
RB95_RS04645	SM00318	Staphylococcal nuclease homologues
RB95_RS04660	SM00062	Bacterial periplasmic substrate-binding proteins
RB95_RS04715	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS04730	SM01004	Delta-aminolevulinic acid dehydratase
RB95_RS04780	SM00382	ATPases associated with a variety of cellular activities
RB95_RS04785	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS04830	SM00382	ATPases associated with a variety of cellular activities
RB95_RS04835	SM00382	ATPases associated with a variety of cellular activities
RB95_RS04875	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RB95_RS04880	SM00382	ATPases associated with a variety of cellular activities
RB95_RS04880	SM00448	cheY-homologous receiver domain
RB95_RS04895	SM00434	DNA Topoisomerase IV
RB95_RS04910	SM00838	Elongation factor G C-terminus
RB95_RS04930	SM00271	DnaJ molecular chaperone homology domain
RB95_RS04945	SM00878	Biotin carboxylase C-terminal domain
RB95_RS04970	SM00342	helix_turn_helix, arabinose operon control protein
RB95_RS04980	SM00876	Biotin and Thiamin Synthesis associated domain
RB95_RS05020	SM00463	Small MutS-related domain
RB95_RS05020	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
RB95_RS05020	SM00534	ATPase domain of DNA mismatch repair MUTS family
RB95_RS05045	SM00116	Domain in cystathionine beta-synthase and other proteins.
RB95_RS05045	SM01240	RB95_RS05045
RB95_RS05090	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RB95_RS05115	SM00382	ATPases associated with a variety of cellular activities
RB95_RS05115	SM00464	Found in ATP-dependent protease La (LON)
RB95_RS05165	SM00478	endonuclease III
RB95_RS05175	SM00487	DEAD-like helicases superfamily
RB95_RS05175	SM00490	helicase superfamily c-terminal domain
RB95_RS05175	SM00982	RB95_RS05175
RB95_RS05175	SM01058	CarD-like/TRCF domain
RB95_RS05220	SM01323	RB95_RS05220
RB95_RS05290	SM00382	ATPases associated with a variety of cellular activities
RB95_RS05290	SM01086	C-terminal, D2-small domain, of ClpB protein
RB95_RS05300	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RB95_RS05300	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RB95_RS05330	SM00382	ATPases associated with a variety of cellular activities
RB95_RS05340	SM00448	cheY-homologous receiver domain
RB95_RS05395	SM00382	ATPases associated with a variety of cellular activities
RB95_RS05545	SM00357	Cold shock protein domain
RB95_RS05545	SM00382	ATPases associated with a variety of cellular activities
RB95_RS05545	SM00959	Rho termination factor, N-terminal domain
RB95_RS05550	SM00382	ATPases associated with a variety of cellular activities
RB95_RS05625	SM00836	DALR anticodon binding domain
RB95_RS05625	SM01016	Arginyl tRNA synthetase N terminal dom
RB95_RS05635	SM00072	Guanylate kinase homologues.
RB95_RS05650	SM00382	ATPases associated with a variety of cellular activities
RB95_RS05690	SM01228	RB95_RS05690
RB95_RS05700	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RB95_RS05735	SM00845	GatB domain
RB95_RS05775	SM00382	ATPases associated with a variety of cellular activities
RB95_RS05780	SM00382	ATPases associated with a variety of cellular activities
RB95_RS05780	SM00962	SRP54-type protein, GTPase domain
RB95_RS05795	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RB95_RS05850	SM00883	Chaperonin 10 Kd subunit
RB95_RS05860	SM00387	Histidine kinase-like ATPases
RB95_RS05860	SM00388	His Kinase A (phosphoacceptor) domain
RB95_RS05865	SM00448	cheY-homologous receiver domain
RB95_RS05865	SM00862	Transcriptional regulatory protein, C terminal
RB95_RS05885	SM00387	Histidine kinase-like ATPases
RB95_RS05885	SM00388	His Kinase A (phosphoacceptor) domain
RB95_RS05890	SM00448	cheY-homologous receiver domain
RB95_RS05890	SM00862	Transcriptional regulatory protein, C terminal
RB95_RS05895	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RB95_RS05900	SM00271	DnaJ molecular chaperone homology domain
RB95_RS05905	SM00422	helix_turn_helix, mercury resistance
RB95_RS05985	SM00465	GIY-YIG type nucleases (URI domain)
RB95_RS06005	SM01209	RB95_RS06005
RB95_RS06005	SM01210	RB95_RS06005
RB95_RS06020	SM00316	Ribosomal protein S1-like RNA-binding domain
RB95_RS06020	SM00322	K homology RNA-binding domain
RB95_RS06025	SM00986	Uracil DNA glycosylase superfamily
RB95_RS06025	SM00987	UreE urease accessory protein, C-terminal domain 
RB95_RS06045	SM00226	Low molecular weight phosphatase family
RB95_RS06055	SM00271	DnaJ molecular chaperone homology domain
RB95_RS06060	SM00448	cheY-homologous receiver domain
RB95_RS06060	SM00862	Transcriptional regulatory protein, C terminal
RB95_RS06065	SM00387	Histidine kinase-like ATPases
RB95_RS06065	SM00388	His Kinase A (phosphoacceptor) domain
RB95_RS06100	SM00646	RB95_RS06100
RB95_RS06110	SM00363	S4 RNA-binding domain
RB95_RS06115	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RB95_RS06115	SM00954	Region found in RelA / SpoT proteins
RB95_RS06120	SM01409	RB95_RS06120
RB95_RS06140	SM00382	ATPases associated with a variety of cellular activities
RB95_RS06150	SM00060	Fibronectin type 3 domain
RB95_RS06155	SM00363	S4 RNA-binding domain
RB95_RS06195	SM00919	Malic enzyme, NAD binding domain
RB95_RS06195	SM01274	RB95_RS06195
RB95_RS06210	SM00878	Biotin carboxylase C-terminal domain
RB95_RS06300	SM00858	RB95_RS06300
RB95_RS06390	SM00382	ATPases associated with a variety of cellular activities
RB95_RS06445	SM00382	ATPases associated with a variety of cellular activities
RB95_RS06470	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS06550	SM01060	RB95_RS06550
RB95_RS06555	SM00248	ankyrin repeats
RB95_RS06580	SM00998	Adenylosuccinate lyase C-terminus
RB95_RS06590	SM00899	RB95_RS06590
RB95_RS06620	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
RB95_RS06850	SM00116	Domain in cystathionine beta-synthase and other proteins.
RB95_RS06865	SM00382	ATPases associated with a variety of cellular activities
RB95_RS06900	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS06905	SM00937	RB95_RS06905
RB95_RS06980	SM00382	ATPases associated with a variety of cellular activities
RB95_RS06990	SM00382	ATPases associated with a variety of cellular activities
RB95_RS07005	SM00890	Domain of unknown function
RB95_RS07080	SM00448	cheY-homologous receiver domain
RB95_RS07080	SM00862	Transcriptional regulatory protein, C terminal
RB95_RS07085	SM00387	Histidine kinase-like ATPases
RB95_RS07095	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
RB95_RS07115	SM00788	Adenylosuccinate synthetase
RB95_RS07155	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RB95_RS07185	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RB95_RS07220	SM00852	Probable molybdopterin binding domain
RB95_RS07260	SM00047	Lysozyme subfamily 2
RB95_RS07290	SM00382	ATPases associated with a variety of cellular activities
RB95_RS07310	SM00796	Allophanate hydrolase subunit 1
RB95_RS07315	SM00797	Allophanate hydrolase subunit 2
RB95_RS07340	SM00829	Enoylreductase
RB95_RS07400	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RB95_RS07405	SM00422	helix_turn_helix, mercury resistance
RB95_RS07415	SM00028	Tetratricopeptide repeats
RB95_RS07455	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
RB95_RS07490	SM00382	ATPases associated with a variety of cellular activities
RB95_RS07495	SM00382	ATPases associated with a variety of cellular activities
RB95_RS07555	SM00382	ATPases associated with a variety of cellular activities
RB95_RS07575	SM00316	Ribosomal protein S1-like RNA-binding domain
RB95_RS07595	SM00363	S4 RNA-binding domain
RB95_RS07595	SM01390	RB95_RS07595
RB95_RS07600	SM00662	RNA polymerases D
RB95_RS07685	SM00937	RB95_RS07685
RB95_RS07705	SM00382	ATPases associated with a variety of cellular activities
RB95_RS07725	SM00478	endonuclease III
RB95_RS07725	SM00525	RB95_RS07725
RB95_RS07820	SM00358	Double-stranded RNA binding motif
RB95_RS07820	SM00535	Ribonuclease III family
RB95_RS07835	SM00400	zinc finger
RB95_RS07835	SM00493	RB95_RS07835
RB95_RS07860	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RB95_RS07870	SM00861	Transketolase, pyrimidine binding domain
RB95_RS07880	SM00382	ATPases associated with a variety of cellular activities
RB95_RS07960	SM00382	ATPases associated with a variety of cellular activities
RB95_RS08030	SM01192	RB95_RS08030
RB95_RS08030	SM01193	RB95_RS08030
RB95_RS08035	SM00382	ATPases associated with a variety of cellular activities
RB95_RS08075	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS08075	SM00876	Biotin and Thiamin Synthesis associated domain
RB95_RS08080	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
RB95_RS08080	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
RB95_RS08080	SM00493	RB95_RS08080
RB95_RS08165	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
RB95_RS08170	SM01374	RB95_RS08170
RB95_RS08190	SM00322	K homology RNA-binding domain
RB95_RS08205	SM01382	RB95_RS08205
RB95_RS08205	SM01383	RB95_RS08205
RB95_RS08225	SM01403	RB95_RS08225
RB95_RS08230	SM00363	S4 RNA-binding domain
RB95_RS08235	SM00849	Metallo-beta-lactamase superfamily
RB95_RS08240	SM00650	Ribosomal RNA adenine dimethylases
RB95_RS08250	SM00729	Elongator protein 3, MiaB family, Radical SAM
RB95_RS08300	SM01329	RB95_RS08300
RB95_RS08305	SM00917	LeuA allosteric (dimerisation) domain
RB95_RS08375	SM00382	ATPases associated with a variety of cellular activities
RB95_RS08375	SM00760	Bacterial dnaA protein helix-turn-helix domain
RB95_RS08380	SM00480	DNA polymerase III beta subunit
RB95_RS08385	SM00387	Histidine kinase-like ATPases
RB95_RS08385	SM00433	TopoisomeraseII
RB95_RS08420	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RB95_RS08460	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RB95_RS08480	SM00998	Adenylosuccinate lyase C-terminus
RB95_RS08510	SM00870	RB95_RS08510
RB95_RS08550	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
