locus-tag class description RC08_RS00030 PF07690 Major Facilitator Superfamily RC08_RS00050 PF00679 Elongation factor G C-terminus RC08_RS00050 PF00009 Elongation factor Tu GTP binding domain RC08_RS00050 PF03144 Elongation factor Tu domain 2 RC08_RS00065 PF03963 Flagellar hook capping protein - N-terminal region RC08_RS00070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC08_RS00070 PF00460 Flagella basal body rod protein RC08_RS00070 PF07559 Flagellar basal body protein FlaE RC08_RS00100 PF03641 Possible lysine decarboxylase RC08_RS00105 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RC08_RS00105 PF04509 CheC-like family RC08_RS00110 PF02154 Flagellar motor switch protein FliM RC08_RS00110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RC08_RS00115 PF04542 Sigma-70 region 2 RC08_RS00115 PF04539 Sigma-70 region 3 RC08_RS00115 PF04545 Sigma-70, region 4 RC08_RS00125 PF10609 NUBPL iron-transfer P-loop NTPase RC08_RS00130 PF00448 SRP54-type protein, GTPase domain RC08_RS00135 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RC08_RS00140 PF01220 Dehydroquinase class II RC08_RS00145 PF01979 Amidohydrolase family RC08_RS00150 PF01343 Peptidase family S49 RC08_RS00175 PF13183 4Fe-4S dicluster domain RC08_RS00175 PF02589 LUD domain RC08_RS00175 PF11870 Domain of unknown function (DUF3390) RC08_RS00180 PF02754 Cysteine-rich domain RC08_RS00185 PF02652 L-lactate permease RC08_RS00200 PF03498 Cytolethal distending toxin A/C domain RC08_RS00210 PF01654 Cytochrome bd terminal oxidase subunit I RC08_RS00215 PF02322 Cytochrome bd terminal oxidase subunit II RC08_RS00235 PF01177 Asp/Glu/Hydantoin racemase RC08_RS00240 PF03167 Uracil DNA glycosylase superfamily RC08_RS00245 PF10415 Fumarase C C-terminus RC08_RS00245 PF00206 Lyase RC08_RS00250 PF03605 Anaerobic c4-dicarboxylate membrane transporter RC08_RS00280 PF00829 Ribosomal prokaryotic L21 protein RC08_RS00285 PF01016 Ribosomal L27 protein RC08_RS00290 PF01926 50S ribosome-binding GTPase RC08_RS00290 PF01018 GTP1/OBG RC08_RS00295 PF00696 Amino acid kinase family RC08_RS00300 PF00551 Formyl transferase RC08_RS00300 PF02911 Formyl transferase, C-terminal domain RC08_RS00305 PF02237 Biotin protein ligase C terminal domain RC08_RS00305 PF03099 Biotin/lipoate A/B protein ligase family RC08_RS00305 PF08279 HTH domain RC08_RS00310 PF13614 AAA domain RC08_RS00315 PF17762 HTH domain found in ParB protein RC08_RS00315 PF02195 ParB-like nuclease domain RC08_RS00325 PF00430 ATP synthase B/B' CF(0) RC08_RS00330 PF00213 ATP synthase delta (OSCP) subunit RC08_RS00335 PF00306 ATP synthase alpha/beta chain, C terminal domain RC08_RS00335 PF02874 ATP synthase alpha/beta family, beta-barrel domain RC08_RS00335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC08_RS00340 PF00231 ATP synthase RC08_RS00345 PF02874 ATP synthase alpha/beta family, beta-barrel domain RC08_RS00345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC08_RS00350 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RC08_RS00355 PF01618 MotA/TolQ/ExbB proton channel family RC08_RS00360 PF02472 Biopolymer transport protein ExbD/TolR RC08_RS00375 PF00691 OmpA family RC08_RS00375 PF00223 Photosystem I psaA/psaB protein RC08_RS00385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RC08_RS00390 PF00698 Acyl transferase domain RC08_RS00395 PF01048 Phosphorylase superfamily RC08_RS00400 PF01171 PP-loop family RC08_RS00415 PF02130 Uncharacterized protein family UPF0054 RC08_RS00425 PF01207 Dihydrouridine synthase (Dus) RC08_RS00435 PF01258 Prokaryotic dksA/traR C4-type zinc finger RC08_RS00440 PF02590 Predicted SPOUT methyltransferase RC08_RS00445 PF01039 Carboxyl transferase domain RC08_RS00445 PF17848 Acetyl-coA carboxylase zinc finger domain RC08_RS00450 PF00459 Inositol monophosphatase family RC08_RS00455 PF07244 Surface antigen variable number repeat RC08_RS00455 PF01103 Surface antigen RC08_RS00470 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RC08_RS00480 PF00288 GHMP kinases N terminal domain RC08_RS00490 PF04760 Translation initiation factor IF-2, N-terminal region RC08_RS00490 PF11987 Translation-initiation factor 2 RC08_RS00490 PF00009 Elongation factor Tu GTP binding domain RC08_RS00495 PF02033 Ribosome-binding factor A RC08_RS00500 PF02576 RimP N-terminal domain RC08_RS00500 PF17384 RimP C-terminal SH3 domain RC08_RS00515 PF00950 ABC 3 transport family RC08_RS00520 PF00005 ABC transporter RC08_RS00540 PF00732 GMC oxidoreductase RC08_RS00540 PF05199 GMC oxidoreductase RC08_RS00550 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC08_RS00555 PF00085 Thioredoxin RC08_RS00560 PF02021 Uncharacterised protein family UPF0102 RC08_RS00565 PF01842 ACT domain RC08_RS00565 PF00742 Homoserine dehydrogenase RC08_RS00565 PF03447 Homoserine dehydrogenase, NAD binding domain RC08_RS00570 PF00155 Aminotransferase class I and II RC08_RS00585 PF08032 RNA 2'-O ribose methyltransferase substrate binding RC08_RS00585 PF00588 SpoU rRNA Methylase family RC08_RS00590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RC08_RS00595 PF01197 Ribosomal protein L31 RC08_RS00600 PF04452 RNA methyltransferase RC08_RS00625 PF06463 Molybdenum Cofactor Synthesis C RC08_RS00625 PF04055 Radical SAM superfamily RC08_RS00650 PF02659 Putative manganese efflux pump RC08_RS00665 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RC08_RS00665 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RC08_RS00670 PF03435 Saccharopine dehydrogenase NADP binding domain RC08_RS00670 PF16653 Saccharopine dehydrogenase C-terminal domain RC08_RS00675 PF08402 TOBE domain RC08_RS00675 PF00005 ABC transporter RC08_RS00685 PF13416 Bacterial extracellular solute-binding protein RC08_RS00695 PF05992 SbmA/BacA-like family RC08_RS00700 PF00571 CBS domain RC08_RS00700 PF03471 Transporter associated domain RC08_RS00700 PF01595 Cyclin M transmembrane N-terminal domain RC08_RS00710 PF08274 PhnA Zinc-Ribbon RC08_RS00710 PF03831 PhnA domain RC08_RS00715 PF03741 Integral membrane protein TerC family RC08_RS00720 PF00551 Formyl transferase RC08_RS00725 PF03853 YjeF-related protein N-terminus RC08_RS00725 PF01256 Carbohydrate kinase RC08_RS00735 PF01078 Magnesium chelatase, subunit ChlI RC08_RS00735 PF13335 Magnesium chelatase, subunit ChlI C-terminal RC08_RS00740 PF01327 Polypeptide deformylase RC08_RS00745 PF00574 Clp protease RC08_RS00750 PF05697 Bacterial trigger factor protein (TF) RC08_RS00750 PF05698 Bacterial trigger factor protein (TF) C-terminus RC08_RS00750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RC08_RS00755 PF01227 GTP cyclohydrolase I RC08_RS00760 PF18269 T3SS EscN ATPase C-terminal domain RC08_RS00760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC08_RS00765 PF00156 Phosphoribosyl transferase domain RC08_RS00770 PF01113 Dihydrodipicolinate reductase, N-terminus RC08_RS00770 PF05173 Dihydrodipicolinate reductase, C-terminus RC08_RS00775 PF12002 MgsA AAA+ ATPase C terminal RC08_RS00775 PF01661 Macro domain RC08_RS00775 PF16193 AAA C-terminal domain RC08_RS00775 PF05496 Holliday junction DNA helicase RuvB P-loop domain RC08_RS00790 PF03600 Citrate transporter RC08_RS00795 PF03169 OPT oligopeptide transporter protein RC08_RS00800 PF02673 Bacitracin resistance protein BacA RC08_RS00805 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RC08_RS00805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RC08_RS00805 PF03129 Anticodon binding domain RC08_RS00810 PF05198 Translation initiation factor IF-3, N-terminal domain RC08_RS00810 PF00707 Translation initiation factor IF-3, C-terminal domain RC08_RS00835 PF02774 Semialdehyde dehydrogenase, dimerisation domain RC08_RS00835 PF01118 Semialdehyde dehydrogenase, NAD binding domain RC08_RS00845 PF00696 Amino acid kinase family RC08_RS00850 PF00202 Aminotransferase class-III RC08_RS00860 PF00132 Bacterial transferase hexapeptide (six repeats) RC08_RS00865 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RC08_RS00865 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RC08_RS00870 PF00268 Ribonucleotide reductase, small chain RC08_RS00880 PF00156 Phosphoribosyl transferase domain RC08_RS00885 PF01765 Ribosome recycling factor RC08_RS00890 PF03840 Preprotein translocase SecG subunit RC08_RS00895 PF01027 Inhibitor of apoptosis-promoting Bax1 RC08_RS00900 PF00484 Carbonic anhydrase RC08_RS00905 PF00924 Mechanosensitive ion channel RC08_RS00910 PF01106 NifU-like domain RC08_RS00910 PF04324 BFD-like [2Fe-2S] binding domain RC08_RS00910 PF01592 NifU-like N terminal domain RC08_RS00915 PF00266 Aminotransferase class-V RC08_RS00920 PF01814 Hemerythrin HHE cation binding domain RC08_RS00930 PF01632 Ribosomal protein L35 RC08_RS00935 PF00453 Ribosomal protein L20 RC08_RS00940 PF17202 Single cache domain 3 RC08_RS00940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC08_RS00940 PF00672 HAMP domain RC08_RS00970 PF01967 MoaC family RC08_RS00975 PF04359 Protein of unknown function (DUF493) RC08_RS00985 PF03372 Endonuclease/Exonuclease/phosphatase family RC08_RS00990 PF08019 Phosphoethanolamine transferase EptA/EptB RC08_RS00990 PF00884 Sulfatase RC08_RS00995 PF01219 Prokaryotic diacylglycerol kinase RC08_RS01005 PF04909 Amidohydrolase RC08_RS01015 PF05958 tRNA (Uracil-5-)-methyltransferase RC08_RS01125 PF04231 Endonuclease I RC08_RS01200 PF01926 50S ribosome-binding GTPase RC08_RS01200 PF07650 KH domain RC08_RS01205 PF10431 C-terminal, D2-small domain, of ClpB protein RC08_RS01205 PF07724 AAA domain (Cdc48 subfamily) RC08_RS01210 PF00227 Proteasome subunit RC08_RS01215 PF03948 Ribosomal protein L9, C-terminal domain RC08_RS01215 PF01281 Ribosomal protein L9, N-terminal domain RC08_RS01220 PF00764 Arginosuccinate synthase RC08_RS01225 PF01479 S4 domain RC08_RS01230 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RC08_RS01235 PF00005 ABC transporter RC08_RS01235 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC08_RS01240 PF00309 Sigma-54 factor, Activator interacting domain (AID) RC08_RS01240 PF04963 Sigma-54 factor, core binding domain RC08_RS01240 PF04552 Sigma-54, DNA binding domain RC08_RS01245 PF03605 Anaerobic c4-dicarboxylate membrane transporter RC08_RS01250 PF03814 Potassium-transporting ATPase A subunit RC08_RS01260 PF02669 K+-transporting ATPase, c chain RC08_RS01265 PF00512 His Kinase A (phospho-acceptor) domain RC08_RS01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC08_RS01265 PF02702 Osmosensitive K+ channel His kinase sensor domain RC08_RS01265 PF13493 Domain of unknown function (DUF4118) RC08_RS01270 PF02151 UvrB/uvrC motif RC08_RS01270 PF00271 Helicase conserved C-terminal domain RC08_RS01270 PF04851 Type III restriction enzyme, res subunit RC08_RS01270 PF17757 UvrB interaction domain RC08_RS01270 PF12344 Ultra-violet resistance protein B RC08_RS01290 PF17764 3′ DNA-binding domain (3′BD) RC08_RS01290 PF00271 Helicase conserved C-terminal domain RC08_RS01290 PF00270 DEAD/DEAH box helicase RC08_RS01290 PF18074 Primosomal protein N C-terminal domain RC08_RS01290 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RC08_RS01300 PF06114 IrrE N-terminal-like domain RC08_RS01320 PF02535 ZIP Zinc transporter RC08_RS01350 PF01145 SPFH domain / Band 7 family RC08_RS01355 PF01063 Amino-transferase class IV RC08_RS01360 PF01361 Tautomerase enzyme RC08_RS01365 PF00578 AhpC/TSA family RC08_RS01370 PF02677 Epoxyqueuosine reductase QueH RC08_RS01375 PF07977 FabA-like domain RC08_RS01380 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RC08_RS01380 PF00132 Bacterial transferase hexapeptide (six repeats) RC08_RS01385 PF06689 ClpX C4-type zinc finger RC08_RS01385 PF07724 AAA domain (Cdc48 subfamily) RC08_RS01385 PF10431 C-terminal, D2-small domain, of ClpB protein RC08_RS01400 PF02142 MGS-like domain RC08_RS01400 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RC08_RS01400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC08_RS01410 PF00923 Transaldolase/Fructose-6-phosphate aldolase RC08_RS01420 PF01584 CheW-like domain RC08_RS01425 PF00072 Response regulator receiver domain RC08_RS01425 PF01627 Hpt domain RC08_RS01425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC08_RS01425 PF02895 Signal transducing histidine kinase, homodimeric domain RC08_RS01425 PF01584 CheW-like domain RC08_RS01430 PF00072 Response regulator receiver domain RC08_RS01430 PF01584 CheW-like domain RC08_RS01440 PF03449 Transcription elongation factor, N-terminal RC08_RS01440 PF01272 Transcription elongation factor, GreA/GreB, C-term RC08_RS01445 PF02684 Lipid-A-disaccharide synthetase RC08_RS01455 PF07690 Major Facilitator Superfamily RC08_RS01460 PF01975 Survival protein SurE RC08_RS01470 PF00905 Penicillin binding protein transpeptidase domain RC08_RS01475 PF00005 ABC transporter RC08_RS01475 PF17850 CysA C-terminal regulatory domain RC08_RS01475 PF12857 TOBE-like domain RC08_RS01480 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS01500 PF04301 Protein of unknown function (DUF452) RC08_RS01505 PF00155 Aminotransferase class I and II RC08_RS01510 PF00202 Aminotransferase class-III RC08_RS01520 PF00893 Small Multidrug Resistance protein RC08_RS01530 PF01386 Ribosomal L25p family RC08_RS01530 PF14693 Ribosomal protein TL5, C-terminal domain RC08_RS01535 PF01195 Peptidyl-tRNA hydrolase RC08_RS01545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RC08_RS01545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RC08_RS01555 PF01842 ACT domain RC08_RS01555 PF00800 Prephenate dehydratase RC08_RS01555 PF01817 Chorismate mutase type II RC08_RS01560 PF00155 Aminotransferase class I and II RC08_RS01565 PF08345 Flagellar M-ring protein C-terminal RC08_RS01565 PF01514 Secretory protein of YscJ/FliF family RC08_RS01570 PF14842 FliG N-terminal domain RC08_RS01570 PF01706 FliG C-terminal domain RC08_RS01570 PF14841 FliG middle domain RC08_RS01580 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RC08_RS01580 PF02779 Transketolase, pyrimidine binding domain RC08_RS01580 PF02780 Transketolase, C-terminal domain RC08_RS01595 PF01209 ubiE/COQ5 methyltransferase family RC08_RS01600 PF13742 OB-fold nucleic acid binding domain RC08_RS01600 PF02601 Exonuclease VII, large subunit RC08_RS01605 PF00266 Aminotransferase class-V RC08_RS01610 PF01042 Endoribonuclease L-PSP RC08_RS01615 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RC08_RS01615 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RC08_RS01620 PF02504 Fatty acid synthesis protein RC08_RS01625 PF01783 Ribosomal L32p protein family RC08_RS01635 PF00334 Nucleoside diphosphate kinase RC08_RS01640 PF00037 4Fe-4S binding domain RC08_RS01645 PF10417 C-terminal domain of 1-Cys peroxiredoxin RC08_RS01645 PF00578 AhpC/TSA family RC08_RS01650 PF01312 FlhB HrpN YscU SpaS Family RC08_RS01655 PF00691 OmpA family RC08_RS01655 PF13677 Membrane MotB of proton-channel complex MotA/MotB RC08_RS01660 PF01618 MotA/TolQ/ExbB proton channel family RC08_RS01665 PF01367 5'-3' exonuclease, C-terminal SAM fold RC08_RS01665 PF01612 3'-5' exonuclease RC08_RS01665 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RC08_RS01665 PF00476 DNA polymerase family A RC08_RS01670 PF00083 Sugar (and other) transporter RC08_RS01670 PF07690 Major Facilitator Superfamily RC08_RS01675 PF01156 Inosine-uridine preferring nucleoside hydrolase RC08_RS01685 PF17760 UvrA interaction domain RC08_RS01685 PF17755 UvrA DNA-binding domain RC08_RS01685 PF00005 ABC transporter RC08_RS01690 PF01925 Sulfite exporter TauE/SafE RC08_RS01700 PF00425 chorismate binding enzyme RC08_RS01700 PF04715 Anthranilate synthase component I, N terminal region RC08_RS01705 PF00591 Glycosyl transferase family, a/b domain RC08_RS01705 PF02885 Glycosyl transferase family, helical bundle domain RC08_RS01705 PF00117 Glutamine amidotransferase class-I RC08_RS01710 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RC08_RS01715 PF00291 Pyridoxal-phosphate dependent enzyme RC08_RS01720 PF00290 Tryptophan synthase alpha chain RC08_RS01730 PF04509 CheC-like family RC08_RS01730 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RC08_RS01745 PF00037 4Fe-4S binding domain RC08_RS01750 PF00486 Transcriptional regulatory protein, C terminal RC08_RS01750 PF00072 Response regulator receiver domain RC08_RS01760 PF02660 Glycerol-3-phosphate acyltransferase RC08_RS01765 PF03150 Di-haem cytochrome c peroxidase RC08_RS01765 PF00034 Cytochrome c RC08_RS01770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RC08_RS01770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RC08_RS01770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RC08_RS01770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RC08_RS01775 PF01252 Signal peptidase (SPase) II RC08_RS01780 PF03653 Uncharacterised protein family (UPF0093) RC08_RS01785 PF06969 HemN C-terminal domain RC08_RS01785 PF04055 Radical SAM superfamily RC08_RS01795 PF02321 Outer membrane efflux protein RC08_RS01800 PF00873 AcrB/AcrD/AcrF family RC08_RS01805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC08_RS01805 PF00529 HlyD membrane-fusion protein of T1SS RC08_RS01820 PF01165 Ribosomal protein S21 RC08_RS01830 PF03738 Glutathionylspermidine synthase preATP-grasp RC08_RS01835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC08_RS01835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC08_RS01840 PF04461 Protein of unknown function (DUF520) RC08_RS01855 PF00004 ATPase family associated with various cellular activities (AAA) RC08_RS01855 PF17862 AAA+ lid domain RC08_RS01855 PF06480 FtsH Extracellular RC08_RS01855 PF01434 Peptidase family M41 RC08_RS01860 PF01794 Ferric reductase like transmembrane component RC08_RS01865 PF00174 Oxidoreductase molybdopterin binding domain RC08_RS01870 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RC08_RS01875 PF01029 NusB family RC08_RS01880 PF00885 6,7-dimethyl-8-ribityllumazine synthase RC08_RS01885 PF00793 DAHP synthetase I family RC08_RS01895 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RC08_RS01895 PF01926 50S ribosome-binding GTPase RC08_RS01900 PF01202 Shikimate kinase RC08_RS01905 PF00579 tRNA synthetases class I (W and Y) RC08_RS01910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RC08_RS01910 PF02403 Seryl-tRNA synthetase N-terminal domain RC08_RS01925 PF00224 Pyruvate kinase, barrel domain RC08_RS01925 PF02887 Pyruvate kinase, alpha/beta domain RC08_RS01925 PF00391 PEP-utilising enzyme, mobile domain RC08_RS01930 PF06039 Malate:quinone oxidoreductase (Mqo) RC08_RS01935 PF03309 Type III pantothenate kinase RC08_RS01945 PF15437 Plasminogen-binding protein pgbA C-terminal RC08_RS01955 PF02686 Glu-tRNAGln amidotransferase C subunit RC08_RS01965 PF01475 Ferric uptake regulator family RC08_RS01970 PF01336 OB-fold nucleic acid binding domain RC08_RS01970 PF00152 tRNA synthetases class II (D, K and N) RC08_RS01975 PF00464 Serine hydroxymethyltransferase RC08_RS01990 PF08501 Shikimate dehydrogenase substrate binding domain RC08_RS02000 PF01790 Prolipoprotein diacylglyceryl transferase RC08_RS02005 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RC08_RS02010 PF00890 FAD binding domain RC08_RS02010 PF02910 Fumarate reductase flavoprotein C-term RC08_RS02015 PF13085 2Fe-2S iron-sulfur cluster binding domain RC08_RS02015 PF13183 4Fe-4S dicluster domain RC08_RS02020 PF01926 50S ribosome-binding GTPase RC08_RS02020 PF12631 MnmE helical domain RC08_RS02020 PF10396 GTP-binding protein TrmE N-terminus RC08_RS02040 PF05199 GMC oxidoreductase RC08_RS02040 PF00732 GMC oxidoreductase RC08_RS02090 PF12848 ABC transporter RC08_RS02090 PF00005 ABC transporter RC08_RS02105 PF01205 Uncharacterized protein family UPF0029 RC08_RS02105 PF09186 Domain of unknown function (DUF1949) RC08_RS02125 PF08245 Mur ligase middle domain RC08_RS02130 PF00953 Glycosyl transferase family 4 RC08_RS02135 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RC08_RS02135 PF01676 Metalloenzyme superfamily RC08_RS02155 PF02910 Fumarate reductase flavoprotein C-term RC08_RS02155 PF00890 FAD binding domain RC08_RS02160 PF13085 2Fe-2S iron-sulfur cluster binding domain RC08_RS02160 PF13183 4Fe-4S dicluster domain RC08_RS02165 PF02754 Cysteine-rich domain RC08_RS02170 PF03070 TENA/THI-4/PQQC family RC08_RS02175 PF00550 Phosphopantetheine attachment site RC08_RS02180 PF02801 Beta-ketoacyl synthase, C-terminal domain RC08_RS02180 PF00109 Beta-ketoacyl synthase, N-terminal domain RC08_RS02185 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RC08_RS02190 PF07715 TonB-dependent Receptor Plug Domain RC08_RS02190 PF00593 TonB dependent receptor RC08_RS02195 PF00293 NUDIX domain RC08_RS02200 PF17200 Single Cache domain 2 RC08_RS02200 PF00672 HAMP domain RC08_RS02200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC08_RS02210 PF00830 Ribosomal L28 family RC08_RS02215 PF00834 Ribulose-phosphate 3 epimerase family RC08_RS02220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RC08_RS02220 PF07733 Bacterial DNA polymerase III alpha NTPase domain RC08_RS02220 PF11490 DNA polymerase III polC-type N-terminus II RC08_RS02220 PF14579 Helix-hairpin-helix motif RC08_RS02220 PF02811 PHP domain RC08_RS02220 PF00929 Exonuclease RC08_RS02220 PF14480 DNA polymerase III polC-type N-terminus I RC08_RS02225 PF01964 Radical SAM ThiC family RC08_RS02245 PF04028 Domain of unknown function (DUF374) RC08_RS02250 PF04055 Radical SAM superfamily RC08_RS02250 PF01938 TRAM domain RC08_RS02250 PF00919 Uncharacterized protein family UPF0004 RC08_RS02260 PF13184 NusA-like KH domain RC08_RS02260 PF08529 NusA N-terminal domain RC08_RS02270 PF04055 Radical SAM superfamily RC08_RS02275 PF05193 Peptidase M16 inactive domain RC08_RS02280 PF00271 Helicase conserved C-terminal domain RC08_RS02280 PF04851 Type III restriction enzyme, res subunit RC08_RS02285 PF01152 Bacterial-like globin RC08_RS02295 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS02300 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS02305 PF00005 ABC transporter RC08_RS02330 PF03143 Elongation factor Tu C-terminal domain RC08_RS02330 PF03144 Elongation factor Tu domain 2 RC08_RS02330 PF00009 Elongation factor Tu GTP binding domain RC08_RS02335 PF00471 Ribosomal protein L33 RC08_RS02350 PF02357 Transcription termination factor nusG RC08_RS02355 PF03946 Ribosomal protein L11, N-terminal domain RC08_RS02355 PF00298 Ribosomal protein L11, RNA binding domain RC08_RS02360 PF00687 Ribosomal protein L1p/L10e family RC08_RS02365 PF00466 Ribosomal protein L10 RC08_RS02370 PF16320 Ribosomal protein L7/L12 dimerisation domain RC08_RS02370 PF00542 Ribosomal protein L7/L12 C-terminal domain RC08_RS02375 PF04561 RNA polymerase Rpb2, domain 2 RC08_RS02375 PF04563 RNA polymerase beta subunit RC08_RS02375 PF00562 RNA polymerase Rpb2, domain 6 RC08_RS02375 PF10385 RNA polymerase beta subunit external 1 domain RC08_RS02375 PF04560 RNA polymerase Rpb2, domain 7 RC08_RS02375 PF04565 RNA polymerase Rpb2, domain 3 RC08_RS02380 PF04998 RNA polymerase Rpb1, domain 5 RC08_RS02380 PF05000 RNA polymerase Rpb1, domain 4 RC08_RS02380 PF00623 RNA polymerase Rpb1, domain 2 RC08_RS02380 PF04997 RNA polymerase Rpb1, domain 1 RC08_RS02380 PF04983 RNA polymerase Rpb1, domain 3 RC08_RS02385 PF00164 Ribosomal protein S12/S23 RC08_RS02390 PF00177 Ribosomal protein S7p/S5e RC08_RS02395 PF00679 Elongation factor G C-terminus RC08_RS02395 PF14492 Elongation Factor G, domain II RC08_RS02395 PF03764 Elongation factor G, domain IV RC08_RS02395 PF00009 Elongation factor Tu GTP binding domain RC08_RS02395 PF03144 Elongation factor Tu domain 2 RC08_RS02425 PF00218 Indole-3-glycerol phosphate synthase RC08_RS02440 PF00762 Ferrochelatase RC08_RS02445 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RC08_RS02445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RC08_RS02450 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC08_RS02455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RC08_RS02455 PF01411 tRNA synthetases class II (A) RC08_RS02455 PF02272 DHHA1 domain RC08_RS02460 PF02545 Maf-like protein RC08_RS02465 PF17092 Penicillin-binding protein OB-like domain RC08_RS02465 PF00905 Penicillin binding protein transpeptidase domain RC08_RS02465 PF00912 Transglycosylase RC08_RS02470 PF10431 C-terminal, D2-small domain, of ClpB protein RC08_RS02470 PF00004 ATPase family associated with various cellular activities (AAA) RC08_RS02470 PF07724 AAA domain (Cdc48 subfamily) RC08_RS02470 PF17871 AAA lid domain RC08_RS02470 PF02861 Clp amino terminal domain, pathogenicity island component RC08_RS02475 PF02583 Metal-sensitive transcriptional repressor RC08_RS02480 PF03572 Peptidase family S41 RC08_RS02480 PF13180 PDZ domain RC08_RS02485 PF01259 SAICAR synthetase RC08_RS02490 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RC08_RS02505 PF01553 Acyltransferase RC08_RS02510 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RC08_RS02515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC08_RS02515 PF00183 Hsp90 protein RC08_RS02520 PF00581 Rhodanese-like domain RC08_RS02540 PF02049 Flagellar hook-basal body complex protein FliE RC08_RS02545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC08_RS02545 PF00460 Flagella basal body rod protein RC08_RS02550 PF00460 Flagella basal body rod protein RC08_RS02565 PF03971 Monomeric isocitrate dehydrogenase RC08_RS02570 PF00056 lactate/malate dehydrogenase, NAD binding domain RC08_RS02570 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RC08_RS02575 PF08442 ATP-grasp domain RC08_RS02575 PF00549 CoA-ligase RC08_RS02580 PF00549 CoA-ligase RC08_RS02580 PF02629 CoA binding domain RC08_RS02590 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RC08_RS02590 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RC08_RS02590 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RC08_RS02595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RC08_RS02615 PF00348 Polyprenyl synthetase RC08_RS02620 PF01488 Shikimate / quinate 5-dehydrogenase RC08_RS02620 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RC08_RS02620 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RC08_RS02625 PF04073 Aminoacyl-tRNA editing domain RC08_RS02625 PF03129 Anticodon binding domain RC08_RS02625 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RC08_RS02635 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RC08_RS02635 PF03900 Porphobilinogen deaminase, C-terminal domain RC08_RS02640 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RC08_RS02650 PF07196 Flagellin hook IN motif RC08_RS02650 PF02465 Flagellar hook-associated protein 2 N-terminus RC08_RS02650 PF07195 Flagellar hook-associated protein 2 C-terminus RC08_RS02655 PF02561 Flagellar protein FliS RC08_RS02670 PF09285 Elongation factor P, C-terminal RC08_RS02670 PF08207 Elongation factor P (EF-P) KOW-like domain RC08_RS02670 PF01132 Elongation factor P (EF-P) OB domain RC08_RS02705 PF00171 Aldehyde dehydrogenase family RC08_RS02710 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC08_RS02725 PF03796 DnaB-like helicase C terminal domain RC08_RS02725 PF00772 DnaB-like helicase N terminal domain RC08_RS02745 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RC08_RS02745 PF00925 GTP cyclohydrolase II RC08_RS02750 PF09424 Yqey-like protein RC08_RS02755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RC08_RS02755 PF00205 Thiamine pyrophosphate enzyme, central domain RC08_RS02755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RC08_RS02760 PF10369 Small subunit of acetolactate synthase RC08_RS02765 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RC08_RS02765 PF00132 Bacterial transferase hexapeptide (six repeats) RC08_RS02770 PF02547 Queuosine biosynthesis protein RC08_RS02775 PF00902 Sec-independent protein translocase protein (TatC) RC08_RS02780 PF02416 mttA/Hcf106 family RC08_RS02785 PF04055 Radical SAM superfamily RC08_RS02785 PF06969 HemN C-terminal domain RC08_RS02790 PF00293 NUDIX domain RC08_RS02795 PF13840 ACT domain RC08_RS02795 PF00696 Amino acid kinase family RC08_RS02795 PF01842 ACT domain RC08_RS02810 PF00809 Pterin binding enzyme RC08_RS02815 PF03120 NAD-dependent DNA ligase OB-fold domain RC08_RS02815 PF01653 NAD-dependent DNA ligase adenylation domain RC08_RS02815 PF00533 BRCA1 C Terminus (BRCT) domain RC08_RS02830 PF06574 FAD synthetase RC08_RS02830 PF01687 Riboflavin kinase RC08_RS02835 PF13847 Methyltransferase domain RC08_RS02850 PF03458 UPF0126 domain RC08_RS02860 PF00633 Helix-hairpin-helix motif RC08_RS02860 PF10576 Iron-sulfur binding domain of endonuclease III RC08_RS02860 PF00730 HhH-GPD superfamily base excision DNA repair protein RC08_RS02870 PF01116 Fructose-bisphosphate aldolase class-II RC08_RS02890 PF00209 Sodium:neurotransmitter symporter family RC08_RS02900 PF00085 Thioredoxin RC08_RS02900 PF02683 Cytochrome C biogenesis protein transmembrane region RC08_RS02900 PF11412 Disulphide bond corrector protein DsbC RC08_RS02905 PF03976 Polyphosphate kinase 2 (PPK2) RC08_RS02910 PF07687 Peptidase dimerisation domain RC08_RS02910 PF01546 Peptidase family M20/M25/M40 RC08_RS02915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC08_RS02920 PF12704 MacB-like periplasmic core domain RC08_RS02920 PF02687 FtsX-like permease family RC08_RS02920 PF00005 ABC transporter RC08_RS02925 PF02321 Outer membrane efflux protein RC08_RS02940 PF03062 MBOAT, membrane-bound O-acyltransferase family RC08_RS02945 PF00210 Ferritin-like domain RC08_RS02950 PF12849 PBP superfamily domain RC08_RS02955 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS02960 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS02965 PF00005 ABC transporter RC08_RS02970 PF01554 MatE RC08_RS02985 PF00708 Acylphosphatase RC08_RS02985 PF17788 HypF Kae1-like domain RC08_RS02985 PF07503 HypF finger RC08_RS02985 PF01300 Telomere recombination RC08_RS02990 PF02492 CobW/HypB/UreG, nucleotide-binding domain RC08_RS02995 PF01455 HupF/HypC family RC08_RS03000 PF01924 Hydrogenase formation hypA family RC08_RS03005 PF00586 AIR synthase related protein, N-terminal domain RC08_RS03005 PF02769 AIR synthase related protein, C-terminal domain RC08_RS03010 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RC08_RS03020 PF00773 RNB domain RC08_RS03025 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RC08_RS03025 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RC08_RS03035 PF17782 DprA winged helix domain RC08_RS03035 PF02481 DNA recombination-mediator protein A RC08_RS03040 PF03652 Holliday junction resolvase RC08_RS03045 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF RC08_RS03045 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF RC08_RS03045 PF01189 16S rRNA methyltransferase RsmB/F RC08_RS03050 PF01625 Peptide methionine sulfoxide reductase RC08_RS03055 PF00719 Inorganic pyrophosphatase RC08_RS03065 PF01336 OB-fold nucleic acid binding domain RC08_RS03065 PF00152 tRNA synthetases class II (D, K and N) RC08_RS03065 PF02938 GAD domain RC08_RS03070 PF01513 ATP-NAD kinase RC08_RS03075 PF13476 AAA domain RC08_RS03080 PF00072 Response regulator receiver domain RC08_RS03080 PF00990 Diguanylate cyclase, GGDEF domain RC08_RS03085 PF01026 TatD related DNase RC08_RS03090 PF00877 NlpC/P60 family RC08_RS03090 PF01476 LysM domain RC08_RS03095 PF03330 Lytic transglycolase RC08_RS03095 PF05036 Sporulation related domain RC08_RS03115 PF01926 50S ribosome-binding GTPase RC08_RS03125 PF00905 Penicillin binding protein transpeptidase domain RC08_RS03125 PF03717 Penicillin-binding Protein dimerisation domain RC08_RS03130 PF01321 Creatinase/Prolidase N-terminal domain RC08_RS03130 PF00557 Metallopeptidase family M24 RC08_RS03155 PF04551 GcpE protein RC08_RS03160 PF02107 Flagellar L-ring protein RC08_RS03165 PF01515 Phosphate acetyl/butaryl transferase RC08_RS03170 PF00871 Acetokinase family RC08_RS03185 PF01795 MraW methylase family RC08_RS03190 PF13145 PPIC-type PPIASE domain RC08_RS03195 PF02491 SHS2 domain inserted in FTSA RC08_RS03200 PF12327 FtsZ family, C-terminal domain RC08_RS03200 PF00091 Tubulin/FtsZ family, GTPase domain RC08_RS03205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC08_RS03205 PF00460 Flagella basal body rod protein RC08_RS03210 PF00460 Flagella basal body rod protein RC08_RS03210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC08_RS03215 PF00120 Glutamine synthetase, catalytic domain RC08_RS03215 PF03951 Glutamine synthetase, beta-Grasp domain RC08_RS03225 PF01136 Peptidase family U32 RC08_RS03230 PF00731 AIR carboxylase RC08_RS03240 PF02091 Glycyl-tRNA synthetase alpha subunit RC08_RS03245 PF01784 NIF3 (NGG1p interacting factor 3) RC08_RS03255 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RC08_RS03255 PF02390 Putative methyltransferase RC08_RS03260 PF00849 RNA pseudouridylate synthase RC08_RS03265 PF02978 Signal peptide binding domain RC08_RS03265 PF00448 SRP54-type protein, GTPase domain RC08_RS03265 PF02881 SRP54-type protein, helical bundle domain RC08_RS03270 PF00886 Ribosomal protein S16 RC08_RS03280 PF01782 RimM N-terminal domain RC08_RS03280 PF05239 PRC-barrel domain RC08_RS03285 PF01746 tRNA (Guanine-1)-methyltransferase RC08_RS03290 PF01245 Ribosomal protein L19 RC08_RS03295 PF00576 HIUase/Transthyretin family RC08_RS03300 PF01474 Class-II DAHP synthetase family RC08_RS03305 PF03960 ArsC family RC08_RS03310 PF07733 Bacterial DNA polymerase III alpha NTPase domain RC08_RS03310 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RC08_RS03310 PF14579 Helix-hairpin-helix motif RC08_RS03310 PF02811 PHP domain RC08_RS03315 PF01168 Alanine racemase, N-terminal domain RC08_RS03320 PF00669 Bacterial flagellin N-terminal helical region RC08_RS03330 PF05175 Methyltransferase small domain RC08_RS03330 PF17827 PrmC N-terminal domain RC08_RS03335 PF01435 Peptidase family M48 RC08_RS03345 PF00994 Probable molybdopterin binding domain RC08_RS03350 PF01544 CorA-like Mg2+ transporter protein RC08_RS03370 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS03390 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC08_RS03430 PF01025 GrpE RC08_RS03435 PF00012 Hsp70 protein RC08_RS03475 PF00155 Aminotransferase class I and II RC08_RS03480 PF00132 Bacterial transferase hexapeptide (six repeats) RC08_RS03480 PF06426 Serine acetyltransferase, N-terminal RC08_RS03485 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RC08_RS03485 PF17944 Arginine decarboxylase C-terminal helical extension RC08_RS03485 PF17810 Arginine decarboxylase helical bundle domain RC08_RS03490 PF03129 Anticodon binding domain RC08_RS03490 PF13393 Histidyl-tRNA synthetase RC08_RS03495 PF02223 Thymidylate kinase RC08_RS03500 PF01467 Cytidylyltransferase-like RC08_RS03505 PF02441 Flavoprotein RC08_RS03515 PF03180 NLPA lipoprotein RC08_RS03520 PF03180 NLPA lipoprotein RC08_RS03525 PF03180 NLPA lipoprotein RC08_RS03530 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS03535 PF09383 NIL domain RC08_RS03535 PF00005 ABC transporter RC08_RS03540 PF10458 Valyl tRNA synthetase tRNA binding arm RC08_RS03540 PF08264 Anticodon-binding domain of tRNA RC08_RS03540 PF00133 tRNA synthetases class I (I, L, M and V) RC08_RS03550 PF13361 UvrD-like helicase C-terminal domain RC08_RS03550 PF00580 UvrD/REP helicase N-terminal domain RC08_RS03560 PF08534 Redoxin RC08_RS03565 PF01568 Molydopterin dinucleotide binding domain RC08_RS03565 PF00384 Molybdopterin oxidoreductase RC08_RS03565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC08_RS03570 PF12800 4Fe-4S binding domain RC08_RS03570 PF12838 4Fe-4S dicluster domain RC08_RS03575 PF13187 4Fe-4S dicluster domain RC08_RS03575 PF12801 4Fe-4S binding domain RC08_RS03580 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) RC08_RS03610 PF13735 tRNA nucleotidyltransferase domain 2 putative RC08_RS03610 PF12627 Probable RNA and SrmB- binding site of polymerase A RC08_RS03610 PF01743 Poly A polymerase head domain RC08_RS03615 PF01842 ACT domain RC08_RS03615 PF00551 Formyl transferase RC08_RS03620 PF00266 Aminotransferase class-V RC08_RS03630 PF00512 His Kinase A (phospho-acceptor) domain RC08_RS03630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC08_RS03635 PF02875 Mur ligase family, glutamate ligase domain RC08_RS03635 PF08245 Mur ligase middle domain RC08_RS03650 PF07478 D-ala D-ala ligase C-terminus RC08_RS03650 PF01820 D-ala D-ala ligase N-terminus RC08_RS03655 PF07499 RuvA, C-terminal domain RC08_RS03655 PF01330 RuvA N terminal domain RC08_RS03665 PF03023 Lipid II flippase MurJ RC08_RS03670 PF09190 DALR domain RC08_RS03670 PF01406 tRNA synthetases class I (C) catalytic domain RC08_RS03675 PF00005 ABC transporter RC08_RS03675 PF00664 ABC transporter transmembrane region RC08_RS03680 PF01180 Dihydroorotate dehydrogenase RC08_RS03685 PF00675 Insulinase (Peptidase family M16) RC08_RS03685 PF05193 Peptidase M16 inactive domain RC08_RS03690 PF00701 Dihydrodipicolinate synthetase family RC08_RS03705 PF00753 Metallo-beta-lactamase superfamily RC08_RS03710 PF02540 NAD synthase RC08_RS03715 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RC08_RS03720 PF00291 Pyridoxal-phosphate dependent enzyme RC08_RS03725 PF02348 Cytidylyltransferase RC08_RS03735 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC08_RS03740 PF00813 FliP family RC08_RS03745 PF00132 Bacterial transferase hexapeptide (six repeats) RC08_RS03745 PF12804 MobA-like NTP transferase domain RC08_RS03750 PF02441 Flavoprotein RC08_RS03750 PF04127 DNA / pantothenate metabolism flavoprotein RC08_RS03760 PF01255 Putative undecaprenyl diphosphate synthase RC08_RS03775 PF01416 tRNA pseudouridine synthase RC08_RS03780 PF00291 Pyridoxal-phosphate dependent enzyme RC08_RS03780 PF13291 ACT domain RC08_RS03795 PF05958 tRNA (Uracil-5-)-methyltransferase RC08_RS03800 PF03553 Na+/H+ antiporter family RC08_RS03805 PF00106 short chain dehydrogenase RC08_RS03815 PF06434 Aconitate hydratase 2 N-terminus RC08_RS03815 PF00330 Aconitase family (aconitate hydratase) RC08_RS03815 PF11791 Aconitate B N-terminal domain RC08_RS03820 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RC08_RS03820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RC08_RS03830 PF01588 Putative tRNA binding domain RC08_RS03830 PF09334 tRNA synthetases class I (M) RC08_RS03830 PF00133 tRNA synthetases class I (I, L, M and V) RC08_RS03840 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RC08_RS03865 PF00749 tRNA synthetases class I (E and Q), catalytic domain RC08_RS03870 PF00149 Calcineurin-like phosphoesterase RC08_RS03875 PF02666 Phosphatidylserine decarboxylase RC08_RS03880 PF01312 FlhB HrpN YscU SpaS Family RC08_RS03890 PF07690 Major Facilitator Superfamily RC08_RS03905 PF00202 Aminotransferase class-III RC08_RS03915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RC08_RS03915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RC08_RS03920 PF10502 Signal peptidase, peptidase S26 RC08_RS03925 PF03453 MoeA N-terminal region (domain I and II) RC08_RS03925 PF00994 Probable molybdopterin binding domain RC08_RS03925 PF03454 MoeA C-terminal region (domain IV) RC08_RS03930 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RC08_RS03945 PF00591 Glycosyl transferase family, a/b domain RC08_RS03945 PF00117 Glutamine amidotransferase class-I RC08_RS03945 PF02885 Glycosyl transferase family, helical bundle domain RC08_RS03950 PF04715 Anthranilate synthase component I, N terminal region RC08_RS03950 PF00425 chorismate binding enzyme RC08_RS03955 PF00589 Phage integrase family RC08_RS03955 PF18644 Phage integrase SAM-like domain RC08_RS03965 PF02600 Disulfide bond formation protein DsbB RC08_RS03970 PF17425 Arylsulfotransferase Ig-like domain RC08_RS03970 PF05935 Arylsulfotransferase (ASST) RC08_RS03980 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RC08_RS04010 PF00771 FHIPEP family RC08_RS04015 PF02082 Transcriptional regulator RC08_RS04020 PF00312 Ribosomal protein S15 RC08_RS04025 PF17854 FtsK alpha domain RC08_RS04025 PF09397 Ftsk gamma domain RC08_RS04025 PF01580 FtsK/SpoIIIE family RC08_RS04030 PF00669 Bacterial flagellin N-terminal helical region RC08_RS04030 PF00700 Bacterial flagellin C-terminal helical region RC08_RS04045 PF00005 ABC transporter RC08_RS04045 PF16326 ABC transporter C-terminal domain RC08_RS04045 PF12848 ABC transporter RC08_RS04050 PF16736 Single Cache-like RC08_RS04050 PF00989 PAS fold RC08_RS04050 PF00512 His Kinase A (phospho-acceptor) domain RC08_RS04050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC08_RS04055 PF00072 Response regulator receiver domain RC08_RS04055 PF00486 Transcriptional regulatory protein, C terminal RC08_RS04060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC08_RS04060 PF01842 ACT domain RC08_RS04060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC08_RS04070 PF00575 S1 RNA binding domain RC08_RS04075 PF02401 LytB protein RC08_RS04080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RC08_RS04085 PF03147 Ferredoxin-fold anticodon binding domain RC08_RS04085 PF01588 Putative tRNA binding domain RC08_RS04085 PF03484 tRNA synthetase B5 domain RC08_RS04085 PF03483 B3/4 domain RC08_RS04085 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RC08_RS04090 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RC08_RS04090 PF01409 tRNA synthetases class II core domain (F) RC08_RS04095 PF01230 HIT domain RC08_RS04110 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS04115 PF00005 ABC transporter RC08_RS04120 PF01235 Sodium:alanine symporter family RC08_RS04125 PF00588 SpoU rRNA Methylase family RC08_RS04130 PF00842 Alanine racemase, C-terminal domain RC08_RS04130 PF01168 Alanine racemase, N-terminal domain RC08_RS04160 PF02630 SCO1/SenC RC08_RS04165 PF00291 Pyridoxal-phosphate dependent enzyme RC08_RS04170 PF00216 Bacterial DNA-binding protein RC08_RS04180 PF03061 Thioesterase superfamily RC08_RS04190 PF02554 Carbon starvation protein CstA RC08_RS04190 PF13722 5TM C-terminal transporter carbon starvation CstA RC08_RS04195 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RC08_RS04195 PF14572 Phosphoribosyl synthetase-associated domain RC08_RS04200 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS04205 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS04210 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC08_RS04215 PF00005 ABC transporter RC08_RS04220 PF01739 CheR methyltransferase, SAM binding domain RC08_RS04225 PF00072 Response regulator receiver domain RC08_RS04225 PF01339 CheB methylesterase RC08_RS04230 PF02502 Ribose/Galactose Isomerase RC08_RS04240 PF00156 Phosphoribosyl transferase domain RC08_RS04250 PF00883 Cytosol aminopeptidase family, catalytic domain RC08_RS04255 PF06071 Protein of unknown function (DUF933) RC08_RS04255 PF01926 50S ribosome-binding GTPase RC08_RS04260 PF00206 Lyase RC08_RS04260 PF14698 Argininosuccinate lyase C-terminal RC08_RS04265 PF01293 Phosphoenolpyruvate carboxykinase RC08_RS04270 PF00364 Biotin-requiring enzyme RC08_RS04270 PF00682 HMGL-like RC08_RS04270 PF02436 Conserved carboxylase domain RC08_RS04275 PF00209 Sodium:neurotransmitter symporter family RC08_RS04280 PF00209 Sodium:neurotransmitter symporter family RC08_RS04285 PF00137 ATP synthase subunit C RC08_RS04320 PF06986 Type-1V conjugative transfer system mating pair stabilisation RC08_RS04330 PF13193 AMP-binding enzyme C-terminal domain RC08_RS04330 PF01553 Acyltransferase RC08_RS04330 PF00501 AMP-binding enzyme RC08_RS04375 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS04385 PF07516 SecA Wing and Scaffold domain RC08_RS04385 PF07517 SecA DEAD-like domain RC08_RS04385 PF02810 SEC-C motif RC08_RS04385 PF01043 SecA preprotein cross-linking domain RC08_RS04390 PF03548 Outer membrane lipoprotein carrier protein LolA RC08_RS04400 PF02689 Helicase RC08_RS04400 PF05970 PIF1-like helicase RC08_RS04410 PF00795 Carbon-nitrogen hydrolase RC08_RS04415 PF16916 Dimerisation domain of Zinc Transporter RC08_RS04415 PF01545 Cation efflux family RC08_RS04420 PF04371 Porphyromonas-type peptidyl-arginine deiminase RC08_RS04430 PF00672 HAMP domain RC08_RS04430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC08_RS04435 PF02142 MGS-like domain RC08_RS04435 PF01808 AICARFT/IMPCHase bienzyme RC08_RS04440 PF05099 Tellurite resistance protein TerB RC08_RS04440 PF00226 DnaJ domain RC08_RS04445 PF00586 AIR synthase related protein, N-terminal domain RC08_RS04445 PF02769 AIR synthase related protein, C-terminal domain RC08_RS04445 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RC08_RS04450 PF01926 50S ribosome-binding GTPase RC08_RS04450 PF12631 MnmE helical domain RC08_RS04450 PF10396 GTP-binding protein TrmE N-terminus RC08_RS04460 PF14849 YidC periplasmic domain RC08_RS04460 PF02096 60Kd inner membrane protein RC08_RS04465 PF01809 Putative membrane protein insertion efficiency factor RC08_RS04470 PF00825 Ribonuclease P RC08_RS04475 PF00468 Ribosomal protein L34 RC08_RS04495 PF03061 Thioesterase superfamily RC08_RS04525 PF01814 Hemerythrin HHE cation binding domain RC08_RS04530 PF08003 Protein of unknown function (DUF1698) RC08_RS04545 PF00565 Staphylococcal nuclease homologue RC08_RS04550 PF07687 Peptidase dimerisation domain RC08_RS04550 PF01546 Peptidase family M20/M25/M40 RC08_RS04555 PF08946 Osmosensory transporter coiled coil RC08_RS04555 PF00083 Sugar (and other) transporter RC08_RS04560 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC08_RS04565 PF16668 Adhesin from Campylobacter RC08_RS04570 PF03883 Peroxide stress protein YaaA RC08_RS04575 PF01546 Peptidase family M20/M25/M40 RC08_RS04575 PF07687 Peptidase dimerisation domain RC08_RS04590 PF07690 Major Facilitator Superfamily RC08_RS04605 PF17437 Family of unknown function (DUF5416) RC08_RS04610 PF13183 4Fe-4S dicluster domain RC08_RS04610 PF02754 Cysteine-rich domain RC08_RS04610 PF02665 Nitrate reductase gamma subunit RC08_RS04615 PF04055 Radical SAM superfamily RC08_RS04615 PF06969 HemN C-terminal domain RC08_RS04620 PF10788 Protein of unknown function (DUF2603) RC08_RS04625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RC08_RS04625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RC08_RS04630 PF00490 Delta-aminolevulinic acid dehydratase RC08_RS04635 PF00925 GTP cyclohydrolase II RC08_RS04640 PF02527 rRNA small subunit methyltransferase G RC08_RS04650 PF03601 Conserved hypothetical protein 698 RC08_RS04655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC08_RS04655 PF03466 LysR substrate binding domain RC08_RS04660 PF04545 Sigma-70, region 4 RC08_RS04660 PF04539 Sigma-70 region 3 RC08_RS04660 PF04542 Sigma-70 region 2 RC08_RS04660 PF00140 Sigma-70 factor, region 1.2 RC08_RS04680 PF01434 Peptidase family M41 RC08_RS04680 PF06480 FtsH Extracellular RC08_RS04680 PF17862 AAA+ lid domain RC08_RS04680 PF00004 ATPase family associated with various cellular activities (AAA) RC08_RS04685 PF00919 Uncharacterized protein family UPF0004 RC08_RS04685 PF04055 Radical SAM superfamily RC08_RS04695 PF01761 3-dehydroquinate synthase RC08_RS04705 PF01702 Queuine tRNA-ribosyltransferase RC08_RS04725 PF05140 ResB-like family RC08_RS04725 PF01578 Cytochrome C assembly protein RC08_RS04730 PF00005 ABC transporter RC08_RS04735 PF00005 ABC transporter RC08_RS04735 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC08_RS04740 PF02653 Branched-chain amino acid transport system / permease component RC08_RS04740 PF11862 Domain of unknown function (DUF3382) RC08_RS04745 PF02653 Branched-chain amino acid transport system / permease component RC08_RS04750 PF13458 Periplasmic binding protein RC08_RS04755 PF13458 Periplasmic binding protein RC08_RS04775 PF02774 Semialdehyde dehydrogenase, dimerisation domain RC08_RS04775 PF01118 Semialdehyde dehydrogenase, NAD binding domain RC08_RS04780 PF00158 Sigma-54 interaction domain RC08_RS04780 PF00072 Response regulator receiver domain RC08_RS04795 PF03989 DNA gyrase C-terminal domain, beta-propeller RC08_RS04795 PF00521 DNA gyrase/topoisomerase IV, subunit A RC08_RS04810 PF06421 GTP-binding protein LepA C-terminus RC08_RS04810 PF03144 Elongation factor Tu domain 2 RC08_RS04810 PF00679 Elongation factor G C-terminus RC08_RS04810 PF00009 Elongation factor Tu GTP binding domain RC08_RS04820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC08_RS04820 PF00529 HlyD membrane-fusion protein of T1SS RC08_RS04825 PF00873 AcrB/AcrD/AcrF family RC08_RS04835 PF04376 Arginine-tRNA-protein transferase, N terminus RC08_RS04835 PF04377 Arginine-tRNA-protein transferase, C terminus RC08_RS04845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC08_RS04845 PF00289 Biotin carboxylase, N-terminal domain RC08_RS04845 PF02785 Biotin carboxylase C-terminal domain RC08_RS04850 PF01098 Cell cycle protein RC08_RS04855 PF04101 Glycosyltransferase family 28 C-terminal domain RC08_RS04855 PF03033 Glycosyltransferase family 28 N-terminal domain RC08_RS04870 PF12833 Helix-turn-helix domain RC08_RS04875 PF02581 Thiamine monophosphate synthase RC08_RS04880 PF06968 Biotin and Thiamin Synthesis associated domain RC08_RS04880 PF04055 Radical SAM superfamily RC08_RS04885 PF05690 Thiazole biosynthesis protein ThiG RC08_RS04890 PF00899 ThiF family RC08_RS04890 PF00581 Rhodanese-like domain RC08_RS04905 PF01546 Peptidase family M20/M25/M40 RC08_RS04905 PF07687 Peptidase dimerisation domain RC08_RS04915 PF02146 Sir2 family RC08_RS04920 PF01713 Smr domain RC08_RS04920 PF00488 MutS domain V RC08_RS04930 PF01225 Mur ligase family, catalytic domain RC08_RS04930 PF08245 Mur ligase middle domain RC08_RS04930 PF02875 Mur ligase family, glutamate ligase domain RC08_RS04945 PF00571 CBS domain RC08_RS04945 PF00478 IMP dehydrogenase / GMP reductase domain RC08_RS04950 PF01425 Amidase RC08_RS04960 PF00133 tRNA synthetases class I (I, L, M and V) RC08_RS04960 PF08264 Anticodon-binding domain of tRNA RC08_RS04965 PF00994 Probable molybdopterin binding domain RC08_RS04965 PF02464 Competence-damaged protein RC08_RS04975 PF00881 Nitroreductase family RC08_RS04980 PF00881 Nitroreductase family RC08_RS04985 PF01066 CDP-alcohol phosphatidyltransferase RC08_RS04990 PF02163 Peptidase family M50 RC08_RS04990 PF17820 PDZ domain RC08_RS04995 PF04393 Protein of unknown function (DUF535) RC08_RS05000 PF01250 Ribosomal protein S6 RC08_RS05005 PF00436 Single-strand binding protein family RC08_RS05010 PF01084 Ribosomal protein S18 RC08_RS05015 PF02190 ATP-dependent protease La (LON) substrate-binding domain RC08_RS05015 PF05362 Lon protease (S16) C-terminal proteolytic domain RC08_RS05015 PF00004 ATPase family associated with various cellular activities (AAA) RC08_RS05025 PF02623 FliW protein RC08_RS05030 PF03807 NADP oxidoreductase coenzyme F420-dependent RC08_RS05030 PF14748 Pyrroline-5-carboxylate reductase dimerisation RC08_RS05055 PF02581 Thiamine monophosphate synthase RC08_RS05060 PF08543 Phosphomethylpyrimidine kinase RC08_RS05075 PF17757 UvrB interaction domain RC08_RS05075 PF03461 TRCF domain RC08_RS05075 PF02559 CarD-like/TRCF domain RC08_RS05075 PF00271 Helicase conserved C-terminal domain RC08_RS05075 PF00270 DEAD/DEAH box helicase RC08_RS05085 PF04225 Opacity-associated protein A LysM-like domain RC08_RS05085 PF01551 Peptidase family M23 RC08_RS05090 PF02875 Mur ligase family, glutamate ligase domain RC08_RS05090 PF08245 Mur ligase middle domain RC08_RS05105 PF00133 tRNA synthetases class I (I, L, M and V) RC08_RS05105 PF09334 tRNA synthetases class I (M) RC08_RS05105 PF13603 Leucyl-tRNA synthetase, Domain 2 RC08_RS05110 PF02355 Protein export membrane protein RC08_RS05110 PF07549 SecD/SecF GG Motif RC08_RS05115 PF02355 Protein export membrane protein RC08_RS05120 PF02699 Preprotein translocase subunit RC08_RS05130 PF02773 S-adenosylmethionine synthetase, C-terminal domain RC08_RS05130 PF02772 S-adenosylmethionine synthetase, central domain RC08_RS05130 PF00438 S-adenosylmethionine synthetase, N-terminal domain RC08_RS05135 PF00375 Sodium:dicarboxylate symporter family RC08_RS05140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RC08_RS05140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RC08_RS05145 PF01432 Peptidase family M3 RC08_RS05145 PF08439 Oligopeptidase F RC08_RS05155 PF13361 UvrD-like helicase C-terminal domain RC08_RS05155 PF00580 UvrD/REP helicase N-terminal domain RC08_RS05160 PF01509 TruB family pseudouridylate synthase (N terminal domain) RC08_RS05165 PF02599 Global regulator protein family RC08_RS05170 PF00288 GHMP kinases N terminal domain RC08_RS05175 PF01668 SmpB protein RC08_RS05185 PF02617 ATP-dependent Clp protease adaptor protein ClpS RC08_RS05190 PF00004 ATPase family associated with various cellular activities (AAA) RC08_RS05190 PF07724 AAA domain (Cdc48 subfamily) RC08_RS05190 PF10431 C-terminal, D2-small domain, of ClpB protein RC08_RS05190 PF17871 AAA lid domain RC08_RS05190 PF02861 Clp amino terminal domain, pathogenicity island component RC08_RS05195 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RC08_RS05200 PF13426 PAS domain RC08_RS05200 PF08447 PAS fold RC08_RS05200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC08_RS05205 PF01914 MarC family integral membrane protein RC08_RS05210 PF01641 SelR domain RC08_RS05215 PF04305 Protein of unknown function (DUF455) RC08_RS05220 PF01066 CDP-alcohol phosphatidyltransferase RC08_RS05230 PF17862 AAA+ lid domain RC08_RS05230 PF00004 ATPase family associated with various cellular activities (AAA) RC08_RS05230 PF01434 Peptidase family M41 RC08_RS05240 PF00072 Response regulator receiver domain RC08_RS05250 PF02719 Polysaccharide biosynthesis protein RC08_RS05255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC08_RS05260 PF17836 PglD N-terminal domain RC08_RS05260 PF00132 Bacterial transferase hexapeptide (six repeats) RC08_RS05265 PF02397 Bacterial sugar transferase RC08_RS05270 PF00534 Glycosyl transferases group 1 RC08_RS05270 PF13477 Glycosyl transferase 4-like RC08_RS05275 PF18527 STT3/PglB C-terminal beta-barrel domain RC08_RS05275 PF02516 Oligosaccharyl transferase STT3 subunit RC08_RS05280 PF13439 Glycosyltransferase Family 4 RC08_RS05280 PF00534 Glycosyl transferases group 1 RC08_RS05285 PF00535 Glycosyl transferase family 2 RC08_RS05290 PF13439 Glycosyltransferase Family 4 RC08_RS05290 PF00534 Glycosyl transferases group 1 RC08_RS05295 PF00664 ABC transporter transmembrane region RC08_RS05295 PF00005 ABC transporter RC08_RS05300 PF16363 GDP-mannose 4,6 dehydratase RC08_RS05310 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RC08_RS05315 PF03279 Bacterial lipid A biosynthesis acyltransferase RC08_RS05320 PF00535 Glycosyl transferase family 2 RC08_RS05325 PF00483 Nucleotidyl transferase RC08_RS05330 PF16363 GDP-mannose 4,6 dehydratase RC08_RS05340 PF05523 WxcM-like, C-terminal RC08_RS05345 PF00132 Bacterial transferase hexapeptide (six repeats) RC08_RS05350 PF02911 Formyl transferase, C-terminal domain RC08_RS05350 PF00551 Formyl transferase RC08_RS05355 PF00535 Glycosyl transferase family 2 RC08_RS05360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC08_RS05390 PF00535 Glycosyl transferase family 2 RC08_RS05400 PF03062 MBOAT, membrane-bound O-acyltransferase family RC08_RS05410 PF13580 SIS domain RC08_RS05415 PF00294 pfkB family carbohydrate kinase RC08_RS05415 PF01467 Cytidylyltransferase-like RC08_RS05420 PF01370 NAD dependent epimerase/dehydratase family RC08_RS05425 PF08645 Polynucleotide kinase 3 phosphatase RC08_RS05440 PF00403 Heavy-metal-associated domain RC08_RS05445 PF07498 Rho termination factor, N-terminal domain RC08_RS05445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC08_RS05445 PF07497 Rho termination factor, RNA-binding domain RC08_RS05450 PF12170 DNA polymerase III tau subunit V interacting with alpha RC08_RS05450 PF12169 DNA polymerase III subunits gamma and tau domain III RC08_RS05460 PF00403 Heavy-metal-associated domain RC08_RS05480 PF12821 Threonine/Serine exporter, ThrE RC08_RS05480 PF06738 Putative threonine/serine exporter RC08_RS05490 PF09335 SNARE associated Golgi protein RC08_RS05505 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RC08_RS05510 PF01709 Transcriptional regulator RC08_RS05515 PF00893 Small Multidrug Resistance protein RC08_RS05520 PF00893 Small Multidrug Resistance protein RC08_RS05525 PF05746 DALR anticodon binding domain RC08_RS05525 PF00750 tRNA synthetases class I (R) RC08_RS05525 PF03485 Arginyl tRNA synthetase N terminal domain RC08_RS05530 PF02416 mttA/Hcf106 family RC08_RS05535 PF00625 Guanylate kinase RC08_RS05545 PF01311 Bacterial export proteins, family 1 RC08_RS05550 PF00005 ABC transporter RC08_RS05555 PF00889 Elongation factor TS RC08_RS05560 PF00318 Ribosomal protein S2 RC08_RS05575 PF00033 Cytochrome b/b6/petB RC08_RS05575 PF00032 Cytochrome b(C-terminal)/b6/petD RC08_RS05580 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RC08_RS05580 PF00355 Rieske [2Fe-2S] domain RC08_RS05585 PF02040 Arsenical pump membrane protein RC08_RS05590 PF01134 Glucose inhibited division protein A RC08_RS05590 PF13932 GidA associated domain RC08_RS05600 PF08447 PAS fold RC08_RS05600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC08_RS05600 PF13426 PAS domain RC08_RS05610 PF00375 Sodium:dicarboxylate symporter family RC08_RS05620 PF01384 Phosphate transporter family RC08_RS05625 PF01979 Amidohydrolase family RC08_RS05630 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RC08_RS05630 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RC08_RS05635 PF02934 GatB/GatE catalytic domain RC08_RS05635 PF02637 GatB domain RC08_RS05640 PF02664 S-Ribosylhomocysteinase (LuxS) RC08_RS05645 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RC08_RS05645 PF03171 2OG-Fe(II) oxygenase superfamily RC08_RS05650 PF03180 NLPA lipoprotein RC08_RS05655 PF08267 Cobalamin-independent synthase, N-terminal domain RC08_RS05655 PF01717 Cobalamin-independent synthase, Catalytic domain RC08_RS05660 PF02219 Methylenetetrahydrofolate reductase RC08_RS05670 PF00119 ATP synthase A chain RC08_RS05675 PF18073 Rubredoxin metal binding domain RC08_RS05680 PF00448 SRP54-type protein, GTPase domain RC08_RS05695 PF12072 Domain of unknown function (DUF3552) RC08_RS05695 PF01966 HD domain RC08_RS05710 PF03631 Virulence factor BrkB RC08_RS05715 PF02913 FAD linked oxidases, C-terminal domain RC08_RS05715 PF01565 FAD binding domain RC08_RS05725 PF01551 Peptidase family M23 RC08_RS05725 PF08525 Opacity-associated protein A N-terminal motif RC08_RS05725 PF01476 LysM domain RC08_RS05735 PF02578 Multi-copper polyphenol oxidoreductase laccase RC08_RS05740 PF00677 Lumazine binding domain RC08_RS05750 PF00166 Chaperonin 10 Kd subunit RC08_RS05755 PF00118 TCP-1/cpn60 chaperonin family RC08_RS05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC08_RS05765 PF00072 Response regulator receiver domain RC08_RS05765 PF00486 Transcriptional regulatory protein, C terminal RC08_RS05770 PF01814 Hemerythrin HHE cation binding domain RC08_RS05790 PF00072 Response regulator receiver domain RC08_RS05790 PF00486 Transcriptional regulatory protein, C terminal RC08_RS05795 PF13180 PDZ domain RC08_RS05795 PF17820 PDZ domain RC08_RS05800 PF00226 DnaJ domain RC08_RS05800 PF01556 DnaJ C terminal domain RC08_RS05805 PF13411 MerR HTH family regulatory protein RC08_RS05810 PF02254 TrkA-N domain RC08_RS05810 PF00999 Sodium/hydrogen exchanger family RC08_RS05820 PF13419 Haloacid dehalogenase-like hydrolase RC08_RS05825 PF02092 Glycyl-tRNA synthetase beta subunit RC08_RS05830 PF01551 Peptidase family M23 RC08_RS05840 PF02541 Ppx/GppA phosphatase family RC08_RS05845 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RC08_RS05850 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RC08_RS05860 PF07690 Major Facilitator Superfamily RC08_RS05870 PF01208 Uroporphyrinogen decarboxylase (URO-D) RC08_RS05875 PF04055 Radical SAM superfamily RC08_RS05885 PF08459 UvrC Helix-hairpin-helix N-terminal RC08_RS05885 PF01541 GIY-YIG catalytic domain RC08_RS05885 PF02151 UvrB/uvrC motif RC08_RS05895 PF00958 GMP synthase C terminal domain RC08_RS05895 PF00117 Glutamine amidotransferase class-I RC08_RS05895 PF02540 NAD synthase RC08_RS05905 PF02843 Phosphoribosylglycinamide synthetase, C domain RC08_RS05905 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RC08_RS05905 PF02844 Phosphoribosylglycinamide synthetase, N domain RC08_RS05920 PF00575 S1 RNA binding domain RC08_RS05920 PF03725 3' exoribonuclease family, domain 2 RC08_RS05920 PF01138 3' exoribonuclease family, domain 1 RC08_RS05920 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RC08_RS05920 PF00013 KH domain RC08_RS05940 PF07690 Major Facilitator Superfamily RC08_RS05945 PF01451 Low molecular weight phosphotyrosine protein phosphatase RC08_RS05950 PF05538 Campylobacter major outer membrane protein RC08_RS05955 PF00684 DnaJ central domain RC08_RS05955 PF00226 DnaJ domain RC08_RS05955 PF01556 DnaJ C terminal domain RC08_RS05960 PF00072 Response regulator receiver domain RC08_RS05960 PF00486 Transcriptional regulatory protein, C terminal RC08_RS05970 PF13662 Toprim domain RC08_RS05970 PF02132 RecR protein RC08_RS05975 PF01750 Hydrogenase maturation protease RC08_RS05980 PF01292 Prokaryotic cytochrome b561 RC08_RS05985 PF00374 Nickel-dependent hydrogenase RC08_RS05990 PF10518 TAT (twin-arginine translocation) pathway signal sequence RC08_RS05990 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RC08_RS05990 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RC08_RS05995 PF01266 FAD dependent oxidoreductase RC08_RS05995 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RC08_RS06000 PF11741 AMIN domain RC08_RS06000 PF01520 N-acetylmuramoyl-L-alanine amidase RC08_RS06010 PF00579 tRNA synthetases class I (W and Y) RC08_RS06015 PF02824 TGS domain RC08_RS06015 PF13291 ACT domain RC08_RS06015 PF04607 Region found in RelA / SpoT proteins RC08_RS06020 PF01192 RNA polymerase Rpb6 RC08_RS06025 PF00696 Amino acid kinase family RC08_RS06040 PF00005 ABC transporter RC08_RS06040 PF09383 NIL domain RC08_RS06045 PF02390 Putative methyltransferase RC08_RS06055 PF00849 RNA pseudouridylate synthase RC08_RS06055 PF01479 S4 domain RC08_RS06060 PF01098 Cell cycle protein RC08_RS06075 PF02386 Cation transport protein RC08_RS06080 PF02080 TrkA-C domain RC08_RS06080 PF02254 TrkA-N domain RC08_RS06085 PF02621 Menaquinone biosynthesis RC08_RS06095 PF00390 Malic enzyme, N-terminal domain RC08_RS06095 PF01515 Phosphate acetyl/butaryl transferase RC08_RS06095 PF03949 Malic enzyme, NAD binding domain RC08_RS06100 PF00749 tRNA synthetases class I (E and Q), catalytic domain RC08_RS06110 PF00289 Biotin carboxylase, N-terminal domain RC08_RS06110 PF02785 Biotin carboxylase C-terminal domain RC08_RS06110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC08_RS06115 PF00364 Biotin-requiring enzyme RC08_RS06120 PF00692 dUTPase RC08_RS06125 PF02719 Polysaccharide biosynthesis protein RC08_RS06130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC08_RS06135 PF16254 Domain of unknown function (DUF4910) RC08_RS06135 PF09940 Domain of unknown function (DUF2172) RC08_RS06135 PF16221 winged helix-turn-helix RC08_RS06145 PF13193 AMP-binding enzyme C-terminal domain RC08_RS06145 PF00550 Phosphopantetheine attachment site RC08_RS06145 PF00668 Condensation domain RC08_RS06145 PF00501 AMP-binding enzyme RC08_RS06150 PF02911 Formyl transferase, C-terminal domain RC08_RS06150 PF00551 Formyl transferase RC08_RS06165 PF02348 Cytidylyltransferase RC08_RS06175 PF13302 Acetyltransferase (GNAT) domain RC08_RS06180 PF13302 Acetyltransferase (GNAT) domain RC08_RS06185 PF00977 Histidine biosynthesis protein RC08_RS06190 PF00117 Glutamine amidotransferase class-I RC08_RS06200 PF03102 NeuB family RC08_RS06200 PF08666 SAF domain RC08_RS06220 PF00669 Bacterial flagellin N-terminal helical region RC08_RS06220 PF07196 Flagellin hook IN motif RC08_RS06220 PF00700 Bacterial flagellin C-terminal helical region RC08_RS06235 PF08334 Type II secretion system (T2SS), protein G RC08_RS06235 PF07963 Prokaryotic N-terminal methylation motif RC08_RS06240 PF00814 Glycoprotease family RC08_RS06250 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RC08_RS06250 PF13288 DXP reductoisomerase C-terminal domain RC08_RS06250 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RC08_RS06265 PF05670 NFACT protein RNA binding domain RC08_RS06270 PF12804 MobA-like NTP transferase domain RC08_RS06275 PF02253 Phospholipase A1 RC08_RS06280 PF01032 FecCD transport family RC08_RS06285 PF01032 FecCD transport family RC08_RS06290 PF00005 ABC transporter RC08_RS06295 PF01497 Periplasmic binding protein RC08_RS06310 PF02335 Cytochrome c552 RC08_RS06315 PF03264 NapC/NirT cytochrome c family, N-terminal region RC08_RS06320 PF13090 Polyphosphate kinase C-terminal domain 2 RC08_RS06320 PF13089 Polyphosphate kinase N-terminal domain RC08_RS06320 PF17941 Polyphosphate kinase C-terminal domain 1 RC08_RS06320 PF02503 Polyphosphate kinase middle domain RC08_RS06345 PF17864 RuvB AAA lid domain RC08_RS06345 PF05496 Holliday junction DNA helicase RuvB P-loop domain RC08_RS06345 PF05491 RuvB C-terminal winged helix domain RC08_RS06350 PF01594 AI-2E family transporter RC08_RS06355 PF10415 Fumarase C C-terminus RC08_RS06355 PF00206 Lyase RC08_RS06360 PF01380 SIS domain RC08_RS06370 PF04055 Radical SAM superfamily RC08_RS06375 PF00860 Permease family RC08_RS06380 PF00156 Phosphoribosyl transferase domain RC08_RS06385 PF04333 MlaA lipoprotein RC08_RS06400 PF01725 Ham1 family RC08_RS06405 PF07690 Major Facilitator Superfamily RC08_RS06415 PF03841 L-seryl-tRNA selenium transferase RC08_RS06420 PF09106 Elongation factor SelB, winged helix RC08_RS06420 PF09107 Elongation factor SelB, winged helix RC08_RS06420 PF00009 Elongation factor Tu GTP binding domain RC08_RS06420 PF03144 Elongation factor Tu domain 2 RC08_RS06425 PF13098 Thioredoxin-like domain RC08_RS06435 PF00258 Flavodoxin RC08_RS06450 PF06628 Catalase-related immune-responsive RC08_RS06450 PF00199 Catalase RC08_RS06460 PF13309 HTH domain RC08_RS06460 PF08348 YheO-like PAS domain RC08_RS06465 PF01042 Endoribonuclease L-PSP RC08_RS06470 PF03606 C4-dicarboxylate anaerobic carrier RC08_RS06475 PF01053 Cys/Met metabolism PLP-dependent enzyme RC08_RS06480 PF10397 Adenylosuccinate lyase C-terminus RC08_RS06480 PF00206 Lyase RC08_RS06490 PF04023 FeoA domain RC08_RS06495 PF02421 Ferrous iron transport protein B RC08_RS06495 PF07664 Ferrous iron transport protein B C terminus RC08_RS06495 PF07670 Nucleoside recognition RC08_RS06500 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RC08_RS06500 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RC08_RS06500 PF10518 TAT (twin-arginine translocation) pathway signal sequence RC08_RS06510 PF00121 Triosephosphate isomerase RC08_RS06515 PF00162 Phosphoglycerate kinase RC08_RS06520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RC08_RS06520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RC08_RS06525 PF01467 Cytidylyltransferase-like RC08_RS06540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RC08_RS06540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RC08_RS06540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RC08_RS06540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RC08_RS06545 PF03748 Flagellar basal body-associated protein FliL RC08_RS06550 PF01648 4'-phosphopantetheinyl transferase superfamily RC08_RS06560 PF00067 Cytochrome P450 RC08_RS06570 PF05159 Capsule polysaccharide biosynthesis protein RC08_RS06575 PF05159 Capsule polysaccharide biosynthesis protein RC08_RS06585 PF00483 Nucleotidyl transferase RC08_RS06590 PF00117 Glutamine amidotransferase class-I RC08_RS06595 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RC08_RS06595 PF00391 PEP-utilising enzyme, mobile domain RC08_RS06600 PF01209 ubiE/COQ5 methyltransferase family RC08_RS06675 PF13419 Haloacid dehalogenase-like hydrolase RC08_RS06690 PF00483 Nucleotidyl transferase RC08_RS06695 PF13580 SIS domain RC08_RS06700 PF08544 GHMP kinases C terminal RC08_RS06700 PF00288 GHMP kinases N terminal domain RC08_RS06705 PF01370 NAD dependent epimerase/dehydratase family RC08_RS06710 PF16363 GDP-mannose 4,6 dehydratase RC08_RS06715 PF01370 NAD dependent epimerase/dehydratase family RC08_RS06720 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RC08_RS06725 PF00535 Glycosyl transferase family 2 RC08_RS06725 PF01501 Glycosyl transferase family 8 RC08_RS06740 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RC08_RS06740 PF00535 Glycosyl transferase family 2 RC08_RS06750 PF00571 CBS domain RC08_RS06750 PF01380 SIS domain RC08_RS06755 PF10531 SLBB domain RC08_RS06755 PF02563 Polysaccharide biosynthesis/export protein RC08_RS06765 PF00005 ABC transporter RC08_RS06770 PF01061 ABC-2 type transporter RC08_RS06795 PF01171 PP-loop family RC08_RS06800 PF04055 Radical SAM superfamily RC08_RS06800 PF00919 Uncharacterized protein family UPF0004 RC08_RS06805 PF03462 PCRF domain RC08_RS06805 PF00472 RF-1 domain RC08_RS06815 PF01142 tRNA pseudouridine synthase D (TruD) RC08_RS06820 PF02769 AIR synthase related protein, C-terminal domain RC08_RS06820 PF00586 AIR synthase related protein, N-terminal domain RC08_RS06840 PF02119 Flagellar P-ring protein RC08_RS06860 PF07196 Flagellin hook IN motif RC08_RS06860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC08_RS06870 PF01925 Sulfite exporter TauE/SafE RC08_RS06875 PF00482 Type II secretion system (T2SS), protein F RC08_RS06880 PF00437 Type II/IV secretion system protein RC08_RS06905 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RC08_RS06905 PF10371 Domain of unknown function RC08_RS06905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RC08_RS06905 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RC08_RS06905 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RC08_RS06910 PF13419 Haloacid dehalogenase-like hydrolase RC08_RS06915 PF05736 OprF membrane domain RC08_RS06915 PF00691 OmpA family RC08_RS06920 PF00380 Ribosomal protein S9/S16 RC08_RS06925 PF00572 Ribosomal protein L13 RC08_RS06930 PF00580 UvrD/REP helicase N-terminal domain RC08_RS06930 PF13361 UvrD-like helicase C-terminal domain RC08_RS06930 PF12705 PD-(D/E)XK nuclease superfamily RC08_RS06935 PF12705 PD-(D/E)XK nuclease superfamily RC08_RS06960 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RC08_RS06960 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RC08_RS06975 PF00115 Cytochrome C and Quinol oxidase polypeptide I RC08_RS06980 PF00072 Response regulator receiver domain RC08_RS06980 PF00486 Transcriptional regulatory protein, C terminal RC08_RS06985 PF08447 PAS fold RC08_RS06985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC08_RS06985 PF08448 PAS fold RC08_RS06995 PF00117 Glutamine amidotransferase class-I RC08_RS06995 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RC08_RS07015 PF00709 Adenylosuccinate synthetase RC08_RS07025 PF04143 Sulphur transport RC08_RS07030 PF01206 Sulfurtransferase TusA RC08_RS07035 PF00474 Sodium:solute symporter family RC08_RS07040 PF00171 Aldehyde dehydrogenase family RC08_RS07040 PF01619 Proline dehydrogenase RC08_RS07040 PF14850 DNA-binding domain of Proline dehydrogenase RC08_RS07040 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RC08_RS07045 PF00586 AIR synthase related protein, N-terminal domain RC08_RS07045 PF02769 AIR synthase related protein, C-terminal domain RC08_RS07055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC08_RS07055 PF02743 Cache domain RC08_RS07055 PF00672 HAMP domain RC08_RS07065 PF02634 FdhD/NarQ family RC08_RS07075 PF13247 4Fe-4S dicluster domain RC08_RS07080 PF01568 Molydopterin dinucleotide binding domain RC08_RS07080 PF00384 Molybdopterin oxidoreductase RC08_RS07080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC08_RS07085 PF00037 4Fe-4S binding domain RC08_RS07085 PF00384 Molybdopterin oxidoreductase RC08_RS07085 PF01568 Molydopterin dinucleotide binding domain RC08_RS07085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC08_RS07085 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RC08_RS07100 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RC08_RS07105 PF07731 Multicopper oxidase RC08_RS07105 PF07732 Multicopper oxidase RC08_RS07115 PF02391 MoaE protein RC08_RS07120 PF00994 Probable molybdopterin binding domain RC08_RS07120 PF03454 MoeA C-terminal region (domain IV) RC08_RS07120 PF03453 MoeA N-terminal region (domain I and II) RC08_RS07125 PF09827 CRISPR associated protein Cas2 RC08_RS07145 PF02769 AIR synthase related protein, C-terminal domain RC08_RS07145 PF00586 AIR synthase related protein, N-terminal domain RC08_RS07150 PF01121 Dephospho-CoA kinase RC08_RS07155 PF01678 Diaminopimelate epimerase RC08_RS07160 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RC08_RS07170 PF00210 Ferritin-like domain RC08_RS07175 PF00342 Phosphoglucose isomerase RC08_RS07180 PF00483 Nucleotidyl transferase RC08_RS07190 PF00005 ABC transporter RC08_RS07195 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS07200 PF12849 PBP superfamily domain RC08_RS07205 PF03746 LamB/YcsF family RC08_RS07210 PF02682 Carboxyltransferase domain, subdomain C and D RC08_RS07215 PF02626 Carboxyltransferase domain, subdomain A and B RC08_RS07225 PF02525 Flavodoxin-like fold RC08_RS07230 PF01638 HxlR-like helix-turn-helix RC08_RS07240 PF00107 Zinc-binding dehydrogenase RC08_RS07240 PF08240 Alcohol dehydrogenase GroES-like domain RC08_RS07260 PF13784 Fic/DOC family N-terminal RC08_RS07260 PF02661 Fic/DOC family RC08_RS07280 PF07690 Major Facilitator Superfamily RC08_RS07285 PF13460 NAD(P)H-binding RC08_RS07290 PF01638 HxlR-like helix-turn-helix RC08_RS07300 PF01022 Bacterial regulatory protein, arsR family RC08_RS07320 PF00361 Proton-conducting membrane transporter RC08_RS07325 PF00361 Proton-conducting membrane transporter RC08_RS07330 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RC08_RS07330 PF00361 Proton-conducting membrane transporter RC08_RS07335 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RC08_RS07340 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RC08_RS07345 PF12838 4Fe-4S dicluster domain RC08_RS07350 PF00146 NADH dehydrogenase RC08_RS07355 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC08_RS07355 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RC08_RS07355 PF00384 Molybdopterin oxidoreductase RC08_RS07355 PF12838 4Fe-4S dicluster domain RC08_RS07355 PF01568 Molydopterin dinucleotide binding domain RC08_RS07370 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RC08_RS07375 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RC08_RS07380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RC08_RS07385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RC08_RS07390 PF00005 ABC transporter RC08_RS07395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC08_RS07395 PF00005 ABC transporter RC08_RS07400 PF12911 N-terminal TM domain of oligopeptide transport permease C RC08_RS07400 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS07410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC08_RS07415 PF01568 Molydopterin dinucleotide binding domain RC08_RS07415 PF00384 Molybdopterin oxidoreductase RC08_RS07415 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC08_RS07420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC08_RS07420 PF01568 Molydopterin dinucleotide binding domain RC08_RS07420 PF00384 Molybdopterin oxidoreductase RC08_RS07425 PF00384 Molybdopterin oxidoreductase RC08_RS07425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC08_RS07425 PF01568 Molydopterin dinucleotide binding domain RC08_RS07430 PF00384 Molybdopterin oxidoreductase RC08_RS07430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC08_RS07430 PF01568 Molydopterin dinucleotide binding domain RC08_RS07435 PF13247 4Fe-4S dicluster domain RC08_RS07435 PF12800 4Fe-4S binding domain RC08_RS07450 PF00175 Oxidoreductase NAD-binding domain RC08_RS07450 PF00970 Oxidoreductase FAD-binding domain RC08_RS07450 PF00042 Globin RC08_RS07455 PF00005 ABC transporter RC08_RS07460 PF07690 Major Facilitator Superfamily RC08_RS07475 PF01176 Translation initiation factor 1A / IF-1 RC08_RS07480 PF00444 Ribosomal protein L36 RC08_RS07485 PF00416 Ribosomal protein S13/S18 RC08_RS07490 PF00411 Ribosomal protein S11 RC08_RS07495 PF01479 S4 domain RC08_RS07495 PF00163 Ribosomal protein S4/S9 N-terminal domain RC08_RS07500 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RC08_RS07500 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RC08_RS07500 PF01000 RNA polymerase Rpb3/RpoA insert domain RC08_RS07505 PF01196 Ribosomal protein L17 RC08_RS07510 PF08029 HisG, C-terminal domain RC08_RS07510 PF01634 ATP phosphoribosyltransferase RC08_RS07515 PF00815 Histidinol dehydrogenase RC08_RS07520 PF00475 Imidazoleglycerol-phosphate dehydratase RC08_RS07520 PF08645 Polynucleotide kinase 3 phosphatase RC08_RS07525 PF00117 Glutamine amidotransferase class-I RC08_RS07530 PF00977 Histidine biosynthesis protein RC08_RS07540 PF00977 Histidine biosynthesis protein RC08_RS07545 PF01502 Phosphoribosyl-AMP cyclohydrolase RC08_RS07545 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RC08_RS07550 PF14602 Hexapeptide repeat of succinyl-transferase RC08_RS07550 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle RC08_RS07555 PF10609 NUBPL iron-transfer P-loop NTPase RC08_RS07555 PF01883 Iron-sulfur cluster assembly protein RC08_RS07560 PF02542 YgbB family RC08_RS07560 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RC08_RS07565 PF00072 Response regulator receiver domain RC08_RS07565 PF00486 Transcriptional regulatory protein, C terminal RC08_RS07570 PF01747 ATP-sulfurylase RC08_RS07570 PF14306 PUA-like domain RC08_RS07575 PF04608 Phosphatidylglycerophosphatase A RC08_RS07580 PF01649 Ribosomal protein S20 RC08_RS07585 PF00472 RF-1 domain RC08_RS07585 PF03462 PCRF domain RC08_RS07590 PF01243 Pyridoxamine 5'-phosphate oxidase RC08_RS07590 PF10615 Protein of unknown function (DUF2470) RC08_RS07595 PF00593 TonB dependent receptor RC08_RS07595 PF07715 TonB-dependent Receptor Plug Domain RC08_RS07600 PF01032 FecCD transport family RC08_RS07605 PF00005 ABC transporter RC08_RS07610 PF01497 Periplasmic binding protein RC08_RS07625 PF14815 NUDIX domain RC08_RS07625 PF00730 HhH-GPD superfamily base excision DNA repair protein RC08_RS07655 PF01872 RibD C-terminal domain RC08_RS07655 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RC08_RS07665 PF03315 Serine dehydratase beta chain RC08_RS07665 PF03313 Serine dehydratase alpha chain RC08_RS07685 PF01618 MotA/TolQ/ExbB proton channel family RC08_RS07690 PF02472 Biopolymer transport protein ExbD/TolR RC08_RS07715 PF01264 Chorismate synthase RC08_RS07720 PF14622 Ribonuclease-III-like RC08_RS07720 PF00035 Double-stranded RNA binding motif RC08_RS07725 PF00075 RNase H RC08_RS07735 PF08275 DNA primase catalytic core, N-terminal domain RC08_RS07735 PF01807 CHC2 zinc finger RC08_RS07750 PF02875 Mur ligase family, glutamate ligase domain RC08_RS07750 PF08245 Mur ligase middle domain RC08_RS07755 PF02575 YbaB/EbfC DNA-binding family RC08_RS07765 PF00348 Polyprenyl synthetase RC08_RS07770 PF02779 Transketolase, pyrimidine binding domain RC08_RS07770 PF02780 Transketolase, C-terminal domain RC08_RS07770 PF00456 Transketolase, thiamine diphosphate binding domain RC08_RS07775 PF02405 Permease MlaE RC08_RS07780 PF00005 ABC transporter RC08_RS07790 PF03886 ABC-type transport auxiliary lipoprotein component RC08_RS07790 PF02470 MlaD protein RC08_RS07800 PF00557 Metallopeptidase family M24 RC08_RS07805 PF01177 Asp/Glu/Hydantoin racemase RC08_RS07810 PF00877 NlpC/P60 family RC08_RS07815 PF06965 Na+/H+ antiporter 1 RC08_RS07820 PF06965 Na+/H+ antiporter 1 RC08_RS07835 PF03239 Iron permease FTR1 family RC08_RS07840 PF10634 Fe2+ transport protein RC08_RS07860 PF00005 ABC transporter RC08_RS07950 PF11798 IMS family HHH motif RC08_RS07950 PF00817 impB/mucB/samB family RC08_RS07950 PF11799 impB/mucB/samB family C-terminal domain RC08_RS07980 PF08463 EcoEI R protein C-terminal RC08_RS07980 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) RC08_RS07980 PF00271 Helicase conserved C-terminal domain RC08_RS07980 PF04851 Type III restriction enzyme, res subunit RC08_RS08000 PF03793 PASTA domain RC08_RS08000 PF00069 Protein kinase domain RC08_RS08030 PF14743 DNA ligase OB-like domain RC08_RS08030 PF01068 ATP dependent DNA ligase domain RC08_RS08045 PF00113 Enolase, C-terminal TIM barrel domain RC08_RS08045 PF03952 Enolase, N-terminal domain RC08_RS08050 PF00154 recA bacterial DNA recombination protein RC08_RS08055 PF02621 Menaquinone biosynthesis RC08_RS08060 PF01313 Bacterial export proteins, family 3 RC08_RS08065 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RC08_RS08075 PF00459 Inositol monophosphatase family RC08_RS08080 PF00285 Citrate synthase, C-terminal domain RC08_RS08090 PF04055 Radical SAM superfamily RC08_RS08090 PF06968 Biotin and Thiamin Synthesis associated domain RC08_RS08095 PF01131 DNA topoisomerase RC08_RS08095 PF01751 Toprim domain RC08_RS08095 PF01396 Topoisomerase DNA binding C4 zinc finger RC08_RS08110 PF00528 Binding-protein-dependent transport system inner membrane component RC08_RS08125 PF13416 Bacterial extracellular solute-binding protein RC08_RS08140 PF00344 SecY translocase RC08_RS08145 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RC08_RS08150 PF03719 Ribosomal protein S5, C-terminal domain RC08_RS08150 PF00333 Ribosomal protein S5, N-terminal domain RC08_RS08155 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RC08_RS08160 PF00347 Ribosomal protein L6 RC08_RS08165 PF00410 Ribosomal protein S8 RC08_RS08170 PF00253 Ribosomal protein S14p/S29e RC08_RS08175 PF00281 Ribosomal protein L5 RC08_RS08175 PF00673 ribosomal L5P family C-terminus RC08_RS08180 PF00467 KOW motif RC08_RS08180 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RC08_RS08185 PF00238 Ribosomal protein L14p/L23e RC08_RS08190 PF00366 Ribosomal protein S17 RC08_RS08195 PF00831 Ribosomal L29 protein RC08_RS08200 PF00252 Ribosomal protein L16p/L10e RC08_RS08205 PF07650 KH domain RC08_RS08205 PF00189 Ribosomal protein S3, C-terminal domain RC08_RS08210 PF00237 Ribosomal protein L22p/L17e RC08_RS08215 PF00203 Ribosomal protein S19 RC08_RS08220 PF00181 Ribosomal Proteins L2, RNA binding domain RC08_RS08220 PF03947 Ribosomal Proteins L2, C-terminal domain RC08_RS08225 PF00276 Ribosomal protein L23 RC08_RS08230 PF00573 Ribosomal protein L4/L1 family RC08_RS08235 PF00297 Ribosomal protein L3 RC08_RS08240 PF00338 Ribosomal protein S10p/S20e RC08_RS08245 PF00849 RNA pseudouridylate synthase RC08_RS08245 PF01479 S4 domain RC08_RS08250 PF00753 Metallo-beta-lactamase superfamily RC08_RS08250 PF17770 Ribonuclease J C-terminal domain RC08_RS08250 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RC08_RS08255 PF00398 Ribosomal RNA adenine dimethylase RC08_RS08265 PF04055 Radical SAM superfamily RC08_RS08285 PF05686 Glycosyl transferase family 90 RC08_RS08305 PF00694 Aconitase C-terminal domain RC08_RS08310 PF00330 Aconitase family (aconitate hydratase) RC08_RS08315 PF00180 Isocitrate/isopropylmalate dehydrogenase RC08_RS08320 PF00682 HMGL-like RC08_RS08320 PF08502 LeuA allosteric (dimerisation) domain RC08_RS08340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RC08_RS08345 PF02086 D12 class N6 adenine-specific DNA methyltransferase RC08_RS08360 PF05315 ICEA Protein RC08_RS08365 PF01555 DNA methylase RC08_RS08370 PF14489 QueF-like protein RC08_RS08380 PF07196 Flagellin hook IN motif RC08_RS08380 PF00460 Flagella basal body rod protein RC08_RS08380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC08_RS08380 PF07559 Flagellar basal body protein FlaE RC08_RS08385 PF02075 Crossover junction endodeoxyribonuclease RuvC RC08_RS08390 PF11638 DnaA N-terminal domain RC08_RS08390 PF08299 Bacterial dnaA protein helix-turn-helix RC08_RS08390 PF00308 Bacterial dnaA protein RC08_RS08395 PF00712 DNA polymerase III beta subunit, N-terminal domain RC08_RS08395 PF02767 DNA polymerase III beta subunit, central domain RC08_RS08395 PF02768 DNA polymerase III beta subunit, C-terminal domain RC08_RS08400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC08_RS08400 PF00986 DNA gyrase B subunit, carboxyl terminus RC08_RS08400 PF01751 Toprim domain RC08_RS08400 PF00204 DNA gyrase B RC08_RS08415 PF03553 Na+/H+ antiporter family RC08_RS08415 PF13726 Na+-H+ antiporter family RC08_RS08420 PF01493 GXGXG motif RC08_RS08420 PF01645 Conserved region in glutamate synthase RC08_RS08420 PF04898 Glutamate synthase central domain RC08_RS08420 PF00310 Glutamine amidotransferases class-II RC08_RS08425 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RC08_RS08425 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC08_RS08430 PF01351 Ribonuclease HII RC08_RS08440 PF02915 Rubrerythrin RC08_RS08445 PF00920 Dehydratase family RC08_RS08450 PF07274 Protein of unknown function (DUF1440) RC08_RS08460 PF06508 Queuosine biosynthesis protein QueC RC08_RS08475 PF00672 HAMP domain RC08_RS08475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC08_RS08475 PF12729 Four helix bundle sensory module for signal transduction RC08_RS08480 PF03150 Di-haem cytochrome c peroxidase RC08_RS08480 PF00034 Cytochrome c RC08_RS08480 PF14376 Haem-binding domain RC08_RS08485 PF01557 Fumarylacetoacetate (FAA) hydrolase family RC08_RS08490 PF00849 RNA pseudouridylate synthase RC08_RS08495 PF10397 Adenylosuccinate lyase C-terminus RC08_RS08495 PF00206 Lyase RC08_RS08500 PF00317 Ribonucleotide reductase, all-alpha domain RC08_RS08500 PF02867 Ribonucleotide reductase, barrel domain RC08_RS08500 PF03477 ATP cone domain RC08_RS08505 PF00375 Sodium:dicarboxylate symporter family RC08_RS08510 PF02511 Thymidylate synthase complementing protein RC08_RS08515 PF00117 Glutamine amidotransferase class-I RC08_RS08515 PF06418 CTP synthase N-terminus RC08_RS08520 PF02272 DHHA1 domain RC08_RS08520 PF17768 RecJ OB domain RC08_RS08520 PF01368 DHH family RC08_RS08525 PF00710 Asparaginase, N-terminal RC08_RS08525 PF17763 Glutaminase/Asparaginase C-terminal domain RC08_RS08555 PF00672 HAMP domain RC08_RS08555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC08_RS08555 PF17200 Single Cache domain 2 RC08_RS08560 PF00669 Bacterial flagellin N-terminal helical region RC08_RS08560 PF07196 Flagellin hook IN motif RC08_RS08560 PF00700 Bacterial flagellin C-terminal helical region RC08_RS08570 PF00669 Bacterial flagellin N-terminal helical region RC08_RS08570 PF07196 Flagellin hook IN motif RC08_RS08570 PF00700 Bacterial flagellin C-terminal helical region