locus-tag class description RC12_RS00030 PF07690 Major Facilitator Superfamily RC12_RS00050 PF00679 Elongation factor G C-terminus RC12_RS00050 PF03144 Elongation factor Tu domain 2 RC12_RS00050 PF00009 Elongation factor Tu GTP binding domain RC12_RS00065 PF03963 Flagellar hook capping protein - N-terminal region RC12_RS00070 PF07559 Flagellar basal body protein FlaE RC12_RS00070 PF00460 Flagella basal body rod protein RC12_RS00070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC12_RS00100 PF03641 Possible lysine decarboxylase RC12_RS00105 PF04509 CheC-like family RC12_RS00105 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RC12_RS00110 PF02154 Flagellar motor switch protein FliM RC12_RS00110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RC12_RS00115 PF04545 Sigma-70, region 4 RC12_RS00115 PF04542 Sigma-70 region 2 RC12_RS00115 PF04539 Sigma-70 region 3 RC12_RS00125 PF10609 NUBPL iron-transfer P-loop NTPase RC12_RS00130 PF00448 SRP54-type protein, GTPase domain RC12_RS00135 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RC12_RS00140 PF01220 Dehydroquinase class II RC12_RS00145 PF01979 Amidohydrolase family RC12_RS00150 PF01343 Peptidase family S49 RC12_RS00175 PF13183 4Fe-4S dicluster domain RC12_RS00175 PF11870 Domain of unknown function (DUF3390) RC12_RS00175 PF02589 LUD domain RC12_RS00180 PF02754 Cysteine-rich domain RC12_RS00185 PF02652 L-lactate permease RC12_RS00200 PF03498 Cytolethal distending toxin A/C domain RC12_RS00210 PF01654 Cytochrome bd terminal oxidase subunit I RC12_RS00215 PF02322 Cytochrome bd terminal oxidase subunit II RC12_RS00235 PF01177 Asp/Glu/Hydantoin racemase RC12_RS00240 PF03167 Uracil DNA glycosylase superfamily RC12_RS00245 PF10415 Fumarase C C-terminus RC12_RS00245 PF00206 Lyase RC12_RS00250 PF03605 Anaerobic c4-dicarboxylate membrane transporter RC12_RS00280 PF00829 Ribosomal prokaryotic L21 protein RC12_RS00285 PF01016 Ribosomal L27 protein RC12_RS00290 PF01926 50S ribosome-binding GTPase RC12_RS00290 PF01018 GTP1/OBG RC12_RS00295 PF00696 Amino acid kinase family RC12_RS00300 PF02911 Formyl transferase, C-terminal domain RC12_RS00300 PF00551 Formyl transferase RC12_RS00305 PF02237 Biotin protein ligase C terminal domain RC12_RS00305 PF03099 Biotin/lipoate A/B protein ligase family RC12_RS00305 PF08279 HTH domain RC12_RS00310 PF13614 AAA domain RC12_RS00315 PF17762 HTH domain found in ParB protein RC12_RS00315 PF02195 ParB-like nuclease domain RC12_RS00325 PF00430 ATP synthase B/B' CF(0) RC12_RS00330 PF00213 ATP synthase delta (OSCP) subunit RC12_RS00335 PF00306 ATP synthase alpha/beta chain, C terminal domain RC12_RS00335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC12_RS00335 PF02874 ATP synthase alpha/beta family, beta-barrel domain RC12_RS00340 PF00231 ATP synthase RC12_RS00345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC12_RS00345 PF02874 ATP synthase alpha/beta family, beta-barrel domain RC12_RS00350 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RC12_RS00355 PF01618 MotA/TolQ/ExbB proton channel family RC12_RS00360 PF02472 Biopolymer transport protein ExbD/TolR RC12_RS00375 PF00223 Photosystem I psaA/psaB protein RC12_RS00375 PF00691 OmpA family RC12_RS00385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RC12_RS00390 PF00698 Acyl transferase domain RC12_RS00395 PF01048 Phosphorylase superfamily RC12_RS00400 PF01171 PP-loop family RC12_RS00415 PF02130 Uncharacterized protein family UPF0054 RC12_RS00435 PF01207 Dihydrouridine synthase (Dus) RC12_RS00445 PF01258 Prokaryotic dksA/traR C4-type zinc finger RC12_RS00450 PF02590 Predicted SPOUT methyltransferase RC12_RS00455 PF17848 Acetyl-coA carboxylase zinc finger domain RC12_RS00455 PF01039 Carboxyl transferase domain RC12_RS00460 PF00459 Inositol monophosphatase family RC12_RS00465 PF07244 Surface antigen variable number repeat RC12_RS00465 PF01103 Surface antigen RC12_RS00480 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RC12_RS00490 PF00288 GHMP kinases N terminal domain RC12_RS00500 PF00009 Elongation factor Tu GTP binding domain RC12_RS00500 PF11987 Translation-initiation factor 2 RC12_RS00500 PF04760 Translation initiation factor IF-2, N-terminal region RC12_RS00505 PF02033 Ribosome-binding factor A RC12_RS00510 PF17384 RimP C-terminal SH3 domain RC12_RS00510 PF02576 RimP N-terminal domain RC12_RS00525 PF00950 ABC 3 transport family RC12_RS00530 PF00005 ABC transporter RC12_RS00550 PF00732 GMC oxidoreductase RC12_RS00550 PF05199 GMC oxidoreductase RC12_RS00560 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC12_RS00565 PF00085 Thioredoxin RC12_RS00570 PF02021 Uncharacterised protein family UPF0102 RC12_RS00575 PF03447 Homoserine dehydrogenase, NAD binding domain RC12_RS00575 PF00742 Homoserine dehydrogenase RC12_RS00575 PF01842 ACT domain RC12_RS00580 PF00155 Aminotransferase class I and II RC12_RS00595 PF00588 SpoU rRNA Methylase family RC12_RS00595 PF08032 RNA 2'-O ribose methyltransferase substrate binding RC12_RS00600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RC12_RS00605 PF01197 Ribosomal protein L31 RC12_RS00610 PF04452 RNA methyltransferase RC12_RS00635 PF06463 Molybdenum Cofactor Synthesis C RC12_RS00635 PF04055 Radical SAM superfamily RC12_RS00660 PF02659 Putative manganese efflux pump RC12_RS00675 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RC12_RS00675 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RC12_RS00680 PF03435 Saccharopine dehydrogenase NADP binding domain RC12_RS00680 PF16653 Saccharopine dehydrogenase C-terminal domain RC12_RS00685 PF00005 ABC transporter RC12_RS00685 PF08402 TOBE domain RC12_RS00695 PF13416 Bacterial extracellular solute-binding protein RC12_RS00705 PF05992 SbmA/BacA-like family RC12_RS00710 PF00571 CBS domain RC12_RS00710 PF03471 Transporter associated domain RC12_RS00710 PF01595 Cyclin M transmembrane N-terminal domain RC12_RS00720 PF08274 PhnA Zinc-Ribbon RC12_RS00720 PF03831 PhnA domain RC12_RS00725 PF03741 Integral membrane protein TerC family RC12_RS00730 PF00551 Formyl transferase RC12_RS00735 PF01256 Carbohydrate kinase RC12_RS00735 PF03853 YjeF-related protein N-terminus RC12_RS00745 PF01078 Magnesium chelatase, subunit ChlI RC12_RS00745 PF13335 Magnesium chelatase, subunit ChlI C-terminal RC12_RS00750 PF01327 Polypeptide deformylase RC12_RS00755 PF00574 Clp protease RC12_RS00760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RC12_RS00760 PF05698 Bacterial trigger factor protein (TF) C-terminus RC12_RS00760 PF05697 Bacterial trigger factor protein (TF) RC12_RS00765 PF01227 GTP cyclohydrolase I RC12_RS00770 PF18269 T3SS EscN ATPase C-terminal domain RC12_RS00770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC12_RS00775 PF00156 Phosphoribosyl transferase domain RC12_RS00780 PF01113 Dihydrodipicolinate reductase, N-terminus RC12_RS00780 PF05173 Dihydrodipicolinate reductase, C-terminus RC12_RS00785 PF16193 AAA C-terminal domain RC12_RS00785 PF05496 Holliday junction DNA helicase RuvB P-loop domain RC12_RS00785 PF12002 MgsA AAA+ ATPase C terminal RC12_RS00785 PF01661 Macro domain RC12_RS00800 PF03600 Citrate transporter RC12_RS00805 PF03169 OPT oligopeptide transporter protein RC12_RS00810 PF02673 Bacitracin resistance protein BacA RC12_RS00815 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RC12_RS00815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RC12_RS00815 PF03129 Anticodon binding domain RC12_RS00820 PF05198 Translation initiation factor IF-3, N-terminal domain RC12_RS00820 PF00707 Translation initiation factor IF-3, C-terminal domain RC12_RS00845 PF01118 Semialdehyde dehydrogenase, NAD binding domain RC12_RS00845 PF02774 Semialdehyde dehydrogenase, dimerisation domain RC12_RS00855 PF00696 Amino acid kinase family RC12_RS00860 PF00202 Aminotransferase class-III RC12_RS00870 PF00132 Bacterial transferase hexapeptide (six repeats) RC12_RS00875 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RC12_RS00875 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RC12_RS00880 PF00268 Ribonucleotide reductase, small chain RC12_RS00890 PF00156 Phosphoribosyl transferase domain RC12_RS00895 PF01765 Ribosome recycling factor RC12_RS00900 PF03840 Preprotein translocase SecG subunit RC12_RS00905 PF01027 Inhibitor of apoptosis-promoting Bax1 RC12_RS00910 PF00484 Carbonic anhydrase RC12_RS00915 PF00924 Mechanosensitive ion channel RC12_RS00920 PF01592 NifU-like N terminal domain RC12_RS00920 PF01106 NifU-like domain RC12_RS00920 PF04324 BFD-like [2Fe-2S] binding domain RC12_RS00925 PF00266 Aminotransferase class-V RC12_RS00930 PF01814 Hemerythrin HHE cation binding domain RC12_RS00940 PF01632 Ribosomal protein L35 RC12_RS00945 PF00453 Ribosomal protein L20 RC12_RS00950 PF00672 HAMP domain RC12_RS00950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC12_RS00950 PF17202 Single cache domain 3 RC12_RS00980 PF01967 MoaC family RC12_RS00985 PF04359 Protein of unknown function (DUF493) RC12_RS00995 PF03372 Endonuclease/Exonuclease/phosphatase family RC12_RS01000 PF00884 Sulfatase RC12_RS01000 PF08019 Phosphoethanolamine transferase EptA/EptB RC12_RS01005 PF01219 Prokaryotic diacylglycerol kinase RC12_RS01015 PF04909 Amidohydrolase RC12_RS01025 PF05958 tRNA (Uracil-5-)-methyltransferase RC12_RS01230 PF04231 Endonuclease I RC12_RS01305 PF07650 KH domain RC12_RS01305 PF01926 50S ribosome-binding GTPase RC12_RS01310 PF07724 AAA domain (Cdc48 subfamily) RC12_RS01310 PF10431 C-terminal, D2-small domain, of ClpB protein RC12_RS01315 PF00227 Proteasome subunit RC12_RS01320 PF01281 Ribosomal protein L9, N-terminal domain RC12_RS01320 PF03948 Ribosomal protein L9, C-terminal domain RC12_RS01325 PF00764 Arginosuccinate synthase RC12_RS01330 PF01479 S4 domain RC12_RS01335 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RC12_RS01340 PF00005 ABC transporter RC12_RS01340 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC12_RS01345 PF04552 Sigma-54, DNA binding domain RC12_RS01345 PF04963 Sigma-54 factor, core binding domain RC12_RS01345 PF00309 Sigma-54 factor, Activator interacting domain (AID) RC12_RS01350 PF03605 Anaerobic c4-dicarboxylate membrane transporter RC12_RS01355 PF03814 Potassium-transporting ATPase A subunit RC12_RS01365 PF02669 K+-transporting ATPase, c chain RC12_RS01370 PF02702 Osmosensitive K+ channel His kinase sensor domain RC12_RS01370 PF00512 His Kinase A (phospho-acceptor) domain RC12_RS01370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC12_RS01370 PF13493 Domain of unknown function (DUF4118) RC12_RS01375 PF04851 Type III restriction enzyme, res subunit RC12_RS01375 PF17757 UvrB interaction domain RC12_RS01375 PF12344 Ultra-violet resistance protein B RC12_RS01375 PF02151 UvrB/uvrC motif RC12_RS01375 PF00271 Helicase conserved C-terminal domain RC12_RS01395 PF00270 DEAD/DEAH box helicase RC12_RS01395 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RC12_RS01395 PF18074 Primosomal protein N C-terminal domain RC12_RS01395 PF17764 3′ DNA-binding domain (3′BD) RC12_RS01395 PF00271 Helicase conserved C-terminal domain RC12_RS01400 PF00483 Nucleotidyl transferase RC12_RS01415 PF06114 IrrE N-terminal-like domain RC12_RS01435 PF02535 ZIP Zinc transporter RC12_RS01465 PF01145 SPFH domain / Band 7 family RC12_RS01470 PF01063 Amino-transferase class IV RC12_RS01475 PF01361 Tautomerase enzyme RC12_RS01480 PF00578 AhpC/TSA family RC12_RS01485 PF02677 Epoxyqueuosine reductase QueH RC12_RS01490 PF07977 FabA-like domain RC12_RS01495 PF00132 Bacterial transferase hexapeptide (six repeats) RC12_RS01495 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RC12_RS01500 PF06689 ClpX C4-type zinc finger RC12_RS01500 PF07724 AAA domain (Cdc48 subfamily) RC12_RS01500 PF10431 C-terminal, D2-small domain, of ClpB protein RC12_RS01515 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RC12_RS01515 PF02142 MGS-like domain RC12_RS01515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC12_RS01525 PF00923 Transaldolase/Fructose-6-phosphate aldolase RC12_RS01535 PF01584 CheW-like domain RC12_RS01540 PF01584 CheW-like domain RC12_RS01540 PF02895 Signal transducing histidine kinase, homodimeric domain RC12_RS01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC12_RS01540 PF01627 Hpt domain RC12_RS01540 PF00072 Response regulator receiver domain RC12_RS01545 PF01584 CheW-like domain RC12_RS01545 PF00072 Response regulator receiver domain RC12_RS01555 PF03449 Transcription elongation factor, N-terminal RC12_RS01555 PF01272 Transcription elongation factor, GreA/GreB, C-term RC12_RS01560 PF02684 Lipid-A-disaccharide synthetase RC12_RS01570 PF07690 Major Facilitator Superfamily RC12_RS01575 PF01975 Survival protein SurE RC12_RS01585 PF00905 Penicillin binding protein transpeptidase domain RC12_RS01590 PF17850 CysA C-terminal regulatory domain RC12_RS01590 PF12857 TOBE-like domain RC12_RS01590 PF00005 ABC transporter RC12_RS01595 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS01615 PF04301 Protein of unknown function (DUF452) RC12_RS01620 PF00155 Aminotransferase class I and II RC12_RS01625 PF00202 Aminotransferase class-III RC12_RS01635 PF00893 Small Multidrug Resistance protein RC12_RS01645 PF01386 Ribosomal L25p family RC12_RS01645 PF14693 Ribosomal protein TL5, C-terminal domain RC12_RS01650 PF01195 Peptidyl-tRNA hydrolase RC12_RS01660 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RC12_RS01660 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RC12_RS01670 PF01817 Chorismate mutase type II RC12_RS01670 PF01842 ACT domain RC12_RS01670 PF00800 Prephenate dehydratase RC12_RS01675 PF00155 Aminotransferase class I and II RC12_RS01680 PF08345 Flagellar M-ring protein C-terminal RC12_RS01680 PF01514 Secretory protein of YscJ/FliF family RC12_RS01685 PF14842 FliG N-terminal domain RC12_RS01685 PF01706 FliG C-terminal domain RC12_RS01685 PF14841 FliG middle domain RC12_RS01695 PF02780 Transketolase, C-terminal domain RC12_RS01695 PF02779 Transketolase, pyrimidine binding domain RC12_RS01695 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RC12_RS01710 PF01209 ubiE/COQ5 methyltransferase family RC12_RS01715 PF13742 OB-fold nucleic acid binding domain RC12_RS01715 PF02601 Exonuclease VII, large subunit RC12_RS01720 PF00266 Aminotransferase class-V RC12_RS01725 PF01042 Endoribonuclease L-PSP RC12_RS01730 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RC12_RS01730 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RC12_RS01735 PF02504 Fatty acid synthesis protein RC12_RS01740 PF01783 Ribosomal L32p protein family RC12_RS01750 PF00334 Nucleoside diphosphate kinase RC12_RS01755 PF00037 4Fe-4S binding domain RC12_RS01760 PF10417 C-terminal domain of 1-Cys peroxiredoxin RC12_RS01760 PF00578 AhpC/TSA family RC12_RS01765 PF01312 FlhB HrpN YscU SpaS Family RC12_RS01770 PF13677 Membrane MotB of proton-channel complex MotA/MotB RC12_RS01770 PF00691 OmpA family RC12_RS01775 PF01618 MotA/TolQ/ExbB proton channel family RC12_RS01780 PF01367 5'-3' exonuclease, C-terminal SAM fold RC12_RS01780 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RC12_RS01780 PF00476 DNA polymerase family A RC12_RS01780 PF01612 3'-5' exonuclease RC12_RS01785 PF00083 Sugar (and other) transporter RC12_RS01785 PF07690 Major Facilitator Superfamily RC12_RS01790 PF01156 Inosine-uridine preferring nucleoside hydrolase RC12_RS01800 PF00005 ABC transporter RC12_RS01800 PF17755 UvrA DNA-binding domain RC12_RS01800 PF17760 UvrA interaction domain RC12_RS01805 PF01925 Sulfite exporter TauE/SafE RC12_RS01815 PF04715 Anthranilate synthase component I, N terminal region RC12_RS01815 PF00425 chorismate binding enzyme RC12_RS01820 PF02885 Glycosyl transferase family, helical bundle domain RC12_RS01820 PF00117 Glutamine amidotransferase class-I RC12_RS01820 PF00591 Glycosyl transferase family, a/b domain RC12_RS01825 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RC12_RS01830 PF00291 Pyridoxal-phosphate dependent enzyme RC12_RS01835 PF00290 Tryptophan synthase alpha chain RC12_RS01845 PF04509 CheC-like family RC12_RS01845 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RC12_RS01860 PF00037 4Fe-4S binding domain RC12_RS01865 PF00486 Transcriptional regulatory protein, C terminal RC12_RS01865 PF00072 Response regulator receiver domain RC12_RS01875 PF02660 Glycerol-3-phosphate acyltransferase RC12_RS01880 PF00034 Cytochrome c RC12_RS01880 PF03150 Di-haem cytochrome c peroxidase RC12_RS01885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RC12_RS01885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RC12_RS01885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RC12_RS01885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RC12_RS01890 PF01252 Signal peptidase (SPase) II RC12_RS01895 PF03653 Uncharacterised protein family (UPF0093) RC12_RS01900 PF04055 Radical SAM superfamily RC12_RS01900 PF06969 HemN C-terminal domain RC12_RS01910 PF02321 Outer membrane efflux protein RC12_RS01915 PF00873 AcrB/AcrD/AcrF family RC12_RS01920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC12_RS01920 PF00529 HlyD membrane-fusion protein of T1SS RC12_RS01935 PF01165 Ribosomal protein S21 RC12_RS01945 PF03738 Glutathionylspermidine synthase preATP-grasp RC12_RS01950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC12_RS01950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC12_RS01955 PF04461 Protein of unknown function (DUF520) RC12_RS01970 PF00004 ATPase family associated with various cellular activities (AAA) RC12_RS01970 PF01434 Peptidase family M41 RC12_RS01970 PF06480 FtsH Extracellular RC12_RS01970 PF17862 AAA+ lid domain RC12_RS01975 PF01794 Ferric reductase like transmembrane component RC12_RS01980 PF00174 Oxidoreductase molybdopterin binding domain RC12_RS01985 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RC12_RS01990 PF01029 NusB family RC12_RS01995 PF00885 6,7-dimethyl-8-ribityllumazine synthase RC12_RS02000 PF00793 DAHP synthetase I family RC12_RS02010 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RC12_RS02010 PF01926 50S ribosome-binding GTPase RC12_RS02015 PF01202 Shikimate kinase RC12_RS02020 PF00579 tRNA synthetases class I (W and Y) RC12_RS02025 PF02403 Seryl-tRNA synthetase N-terminal domain RC12_RS02025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RC12_RS02040 PF00391 PEP-utilising enzyme, mobile domain RC12_RS02040 PF00224 Pyruvate kinase, barrel domain RC12_RS02040 PF02887 Pyruvate kinase, alpha/beta domain RC12_RS02045 PF06039 Malate:quinone oxidoreductase (Mqo) RC12_RS02050 PF03309 Type III pantothenate kinase RC12_RS02060 PF15437 Plasminogen-binding protein pgbA C-terminal RC12_RS02070 PF02686 Glu-tRNAGln amidotransferase C subunit RC12_RS02080 PF01475 Ferric uptake regulator family RC12_RS02085 PF00152 tRNA synthetases class II (D, K and N) RC12_RS02085 PF01336 OB-fold nucleic acid binding domain RC12_RS02090 PF00464 Serine hydroxymethyltransferase RC12_RS02105 PF08501 Shikimate dehydrogenase substrate binding domain RC12_RS02115 PF01790 Prolipoprotein diacylglyceryl transferase RC12_RS02120 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RC12_RS02125 PF02910 Fumarate reductase flavoprotein C-term RC12_RS02125 PF00890 FAD binding domain RC12_RS02130 PF13085 2Fe-2S iron-sulfur cluster binding domain RC12_RS02130 PF13183 4Fe-4S dicluster domain RC12_RS02135 PF10396 GTP-binding protein TrmE N-terminus RC12_RS02135 PF12631 MnmE helical domain RC12_RS02135 PF01926 50S ribosome-binding GTPase RC12_RS02155 PF00732 GMC oxidoreductase RC12_RS02155 PF05199 GMC oxidoreductase RC12_RS02205 PF12848 ABC transporter RC12_RS02205 PF00005 ABC transporter RC12_RS02220 PF09186 Domain of unknown function (DUF1949) RC12_RS02220 PF01205 Uncharacterized protein family UPF0029 RC12_RS02240 PF08245 Mur ligase middle domain RC12_RS02245 PF00953 Glycosyl transferase family 4 RC12_RS02250 PF01676 Metalloenzyme superfamily RC12_RS02250 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RC12_RS02270 PF02910 Fumarate reductase flavoprotein C-term RC12_RS02270 PF00890 FAD binding domain RC12_RS02275 PF13085 2Fe-2S iron-sulfur cluster binding domain RC12_RS02275 PF13183 4Fe-4S dicluster domain RC12_RS02280 PF02754 Cysteine-rich domain RC12_RS02285 PF03070 TENA/THI-4/PQQC family RC12_RS02290 PF00550 Phosphopantetheine attachment site RC12_RS02295 PF00109 Beta-ketoacyl synthase, N-terminal domain RC12_RS02295 PF02801 Beta-ketoacyl synthase, C-terminal domain RC12_RS02300 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RC12_RS02305 PF00593 TonB dependent receptor RC12_RS02305 PF07715 TonB-dependent Receptor Plug Domain RC12_RS02310 PF00293 NUDIX domain RC12_RS02315 PF17200 Single Cache domain 2 RC12_RS02315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC12_RS02315 PF00672 HAMP domain RC12_RS02325 PF00830 Ribosomal L28 family RC12_RS02330 PF00834 Ribulose-phosphate 3 epimerase family RC12_RS02335 PF00929 Exonuclease RC12_RS02335 PF14579 Helix-hairpin-helix motif RC12_RS02335 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RC12_RS02335 PF07733 Bacterial DNA polymerase III alpha NTPase domain RC12_RS02335 PF11490 DNA polymerase III polC-type N-terminus II RC12_RS02335 PF14480 DNA polymerase III polC-type N-terminus I RC12_RS02335 PF02811 PHP domain RC12_RS02340 PF01964 Radical SAM ThiC family RC12_RS02360 PF04028 Domain of unknown function (DUF374) RC12_RS02365 PF00919 Uncharacterized protein family UPF0004 RC12_RS02365 PF01938 TRAM domain RC12_RS02365 PF04055 Radical SAM superfamily RC12_RS02375 PF13184 NusA-like KH domain RC12_RS02375 PF08529 NusA N-terminal domain RC12_RS02385 PF04055 Radical SAM superfamily RC12_RS02390 PF05193 Peptidase M16 inactive domain RC12_RS02395 PF00271 Helicase conserved C-terminal domain RC12_RS02395 PF04851 Type III restriction enzyme, res subunit RC12_RS02400 PF01152 Bacterial-like globin RC12_RS02410 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS02415 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS02420 PF00005 ABC transporter RC12_RS02445 PF03144 Elongation factor Tu domain 2 RC12_RS02445 PF00009 Elongation factor Tu GTP binding domain RC12_RS02445 PF03143 Elongation factor Tu C-terminal domain RC12_RS02450 PF00471 Ribosomal protein L33 RC12_RS02465 PF02357 Transcription termination factor nusG RC12_RS02470 PF00298 Ribosomal protein L11, RNA binding domain RC12_RS02470 PF03946 Ribosomal protein L11, N-terminal domain RC12_RS02475 PF00687 Ribosomal protein L1p/L10e family RC12_RS02480 PF00466 Ribosomal protein L10 RC12_RS02485 PF16320 Ribosomal protein L7/L12 dimerisation domain RC12_RS02485 PF00542 Ribosomal protein L7/L12 C-terminal domain RC12_RS02490 PF04560 RNA polymerase Rpb2, domain 7 RC12_RS02490 PF04563 RNA polymerase beta subunit RC12_RS02490 PF00562 RNA polymerase Rpb2, domain 6 RC12_RS02490 PF04561 RNA polymerase Rpb2, domain 2 RC12_RS02490 PF10385 RNA polymerase beta subunit external 1 domain RC12_RS02490 PF04565 RNA polymerase Rpb2, domain 3 RC12_RS02495 PF00623 RNA polymerase Rpb1, domain 2 RC12_RS02495 PF05000 RNA polymerase Rpb1, domain 4 RC12_RS02495 PF04998 RNA polymerase Rpb1, domain 5 RC12_RS02495 PF04997 RNA polymerase Rpb1, domain 1 RC12_RS02495 PF04983 RNA polymerase Rpb1, domain 3 RC12_RS02500 PF00164 Ribosomal protein S12/S23 RC12_RS02505 PF00177 Ribosomal protein S7p/S5e RC12_RS02510 PF00679 Elongation factor G C-terminus RC12_RS02510 PF03764 Elongation factor G, domain IV RC12_RS02510 PF00009 Elongation factor Tu GTP binding domain RC12_RS02510 PF03144 Elongation factor Tu domain 2 RC12_RS02510 PF14492 Elongation Factor G, domain II RC12_RS02540 PF00218 Indole-3-glycerol phosphate synthase RC12_RS02555 PF00762 Ferrochelatase RC12_RS02560 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RC12_RS02560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RC12_RS02565 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC12_RS02570 PF02272 DHHA1 domain RC12_RS02570 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RC12_RS02570 PF01411 tRNA synthetases class II (A) RC12_RS02575 PF02545 Maf-like protein RC12_RS02580 PF17092 Penicillin-binding protein OB-like domain RC12_RS02580 PF00912 Transglycosylase RC12_RS02580 PF00905 Penicillin binding protein transpeptidase domain RC12_RS02585 PF00004 ATPase family associated with various cellular activities (AAA) RC12_RS02585 PF07724 AAA domain (Cdc48 subfamily) RC12_RS02585 PF10431 C-terminal, D2-small domain, of ClpB protein RC12_RS02585 PF02861 Clp amino terminal domain, pathogenicity island component RC12_RS02585 PF17871 AAA lid domain RC12_RS02590 PF02583 Metal-sensitive transcriptional repressor RC12_RS02595 PF03572 Peptidase family S41 RC12_RS02595 PF13180 PDZ domain RC12_RS02600 PF01259 SAICAR synthetase RC12_RS02605 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RC12_RS02620 PF01553 Acyltransferase RC12_RS02625 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RC12_RS02630 PF00183 Hsp90 protein RC12_RS02630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC12_RS02635 PF00581 Rhodanese-like domain RC12_RS02655 PF02049 Flagellar hook-basal body complex protein FliE RC12_RS02660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC12_RS02660 PF00460 Flagella basal body rod protein RC12_RS02665 PF00460 Flagella basal body rod protein RC12_RS02680 PF03971 Monomeric isocitrate dehydrogenase RC12_RS02685 PF00056 lactate/malate dehydrogenase, NAD binding domain RC12_RS02685 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RC12_RS02690 PF00549 CoA-ligase RC12_RS02690 PF08442 ATP-grasp domain RC12_RS02695 PF02629 CoA binding domain RC12_RS02695 PF00549 CoA-ligase RC12_RS02705 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RC12_RS02705 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RC12_RS02705 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RC12_RS02710 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RC12_RS02730 PF00348 Polyprenyl synthetase RC12_RS02735 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RC12_RS02735 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RC12_RS02735 PF01488 Shikimate / quinate 5-dehydrogenase RC12_RS02740 PF04073 Aminoacyl-tRNA editing domain RC12_RS02740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RC12_RS02740 PF03129 Anticodon binding domain RC12_RS02750 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RC12_RS02750 PF03900 Porphobilinogen deaminase, C-terminal domain RC12_RS02755 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RC12_RS02765 PF07196 Flagellin hook IN motif RC12_RS02765 PF07195 Flagellar hook-associated protein 2 C-terminus RC12_RS02765 PF02465 Flagellar hook-associated protein 2 N-terminus RC12_RS02770 PF02561 Flagellar protein FliS RC12_RS02785 PF09285 Elongation factor P, C-terminal RC12_RS02785 PF08207 Elongation factor P (EF-P) KOW-like domain RC12_RS02785 PF01132 Elongation factor P (EF-P) OB domain RC12_RS02820 PF00171 Aldehyde dehydrogenase family RC12_RS02825 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC12_RS02840 PF00772 DnaB-like helicase N terminal domain RC12_RS02840 PF03796 DnaB-like helicase C terminal domain RC12_RS02860 PF00925 GTP cyclohydrolase II RC12_RS02860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RC12_RS02865 PF09424 Yqey-like protein RC12_RS02870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RC12_RS02870 PF00205 Thiamine pyrophosphate enzyme, central domain RC12_RS02870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RC12_RS02875 PF10369 Small subunit of acetolactate synthase RC12_RS02880 PF00132 Bacterial transferase hexapeptide (six repeats) RC12_RS02880 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RC12_RS02885 PF02547 Queuosine biosynthesis protein RC12_RS02890 PF00902 Sec-independent protein translocase protein (TatC) RC12_RS02895 PF02416 mttA/Hcf106 family RC12_RS02900 PF06969 HemN C-terminal domain RC12_RS02900 PF04055 Radical SAM superfamily RC12_RS02905 PF00293 NUDIX domain RC12_RS02910 PF00696 Amino acid kinase family RC12_RS02910 PF01842 ACT domain RC12_RS02910 PF13840 ACT domain RC12_RS02925 PF00809 Pterin binding enzyme RC12_RS02930 PF01653 NAD-dependent DNA ligase adenylation domain RC12_RS02930 PF03120 NAD-dependent DNA ligase OB-fold domain RC12_RS02930 PF00533 BRCA1 C Terminus (BRCT) domain RC12_RS02945 PF06574 FAD synthetase RC12_RS02945 PF01687 Riboflavin kinase RC12_RS02950 PF13847 Methyltransferase domain RC12_RS02965 PF03458 UPF0126 domain RC12_RS02975 PF10576 Iron-sulfur binding domain of endonuclease III RC12_RS02975 PF00633 Helix-hairpin-helix motif RC12_RS02975 PF00730 HhH-GPD superfamily base excision DNA repair protein RC12_RS02985 PF01116 Fructose-bisphosphate aldolase class-II RC12_RS03005 PF00209 Sodium:neurotransmitter symporter family RC12_RS03015 PF00085 Thioredoxin RC12_RS03015 PF02683 Cytochrome C biogenesis protein transmembrane region RC12_RS03015 PF11412 Disulphide bond corrector protein DsbC RC12_RS03020 PF03976 Polyphosphate kinase 2 (PPK2) RC12_RS03025 PF01546 Peptidase family M20/M25/M40 RC12_RS03025 PF07687 Peptidase dimerisation domain RC12_RS03030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC12_RS03035 PF02687 FtsX-like permease family RC12_RS03035 PF00005 ABC transporter RC12_RS03035 PF12704 MacB-like periplasmic core domain RC12_RS03040 PF02321 Outer membrane efflux protein RC12_RS03055 PF03062 MBOAT, membrane-bound O-acyltransferase family RC12_RS03060 PF00210 Ferritin-like domain RC12_RS03065 PF12849 PBP superfamily domain RC12_RS03070 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS03075 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS03080 PF00005 ABC transporter RC12_RS03085 PF01554 MatE RC12_RS03100 PF07503 HypF finger RC12_RS03100 PF00708 Acylphosphatase RC12_RS03100 PF01300 Telomere recombination RC12_RS03100 PF17788 HypF Kae1-like domain RC12_RS03105 PF02492 CobW/HypB/UreG, nucleotide-binding domain RC12_RS03110 PF01455 HupF/HypC family RC12_RS03115 PF01924 Hydrogenase formation hypA family RC12_RS03120 PF02769 AIR synthase related protein, C-terminal domain RC12_RS03120 PF00586 AIR synthase related protein, N-terminal domain RC12_RS03125 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RC12_RS03135 PF00773 RNB domain RC12_RS03140 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RC12_RS03140 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RC12_RS03150 PF02481 DNA recombination-mediator protein A RC12_RS03150 PF17782 DprA winged helix domain RC12_RS03155 PF03652 Holliday junction resolvase RC12_RS03160 PF01189 16S rRNA methyltransferase RsmB/F RC12_RS03160 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF RC12_RS03160 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF RC12_RS03165 PF01625 Peptide methionine sulfoxide reductase RC12_RS03170 PF00719 Inorganic pyrophosphatase RC12_RS03180 PF01336 OB-fold nucleic acid binding domain RC12_RS03180 PF00152 tRNA synthetases class II (D, K and N) RC12_RS03180 PF02938 GAD domain RC12_RS03185 PF01513 ATP-NAD kinase RC12_RS03190 PF13476 AAA domain RC12_RS03195 PF00990 Diguanylate cyclase, GGDEF domain RC12_RS03195 PF00072 Response regulator receiver domain RC12_RS03200 PF01026 TatD related DNase RC12_RS03205 PF00877 NlpC/P60 family RC12_RS03205 PF01476 LysM domain RC12_RS03210 PF03330 Lytic transglycolase RC12_RS03210 PF05036 Sporulation related domain RC12_RS03230 PF01926 50S ribosome-binding GTPase RC12_RS03240 PF03717 Penicillin-binding Protein dimerisation domain RC12_RS03240 PF00905 Penicillin binding protein transpeptidase domain RC12_RS03245 PF00557 Metallopeptidase family M24 RC12_RS03245 PF01321 Creatinase/Prolidase N-terminal domain RC12_RS03270 PF04551 GcpE protein RC12_RS03275 PF02107 Flagellar L-ring protein RC12_RS03280 PF01515 Phosphate acetyl/butaryl transferase RC12_RS03285 PF00871 Acetokinase family RC12_RS03300 PF01795 MraW methylase family RC12_RS03305 PF13145 PPIC-type PPIASE domain RC12_RS03310 PF02491 SHS2 domain inserted in FTSA RC12_RS03315 PF12327 FtsZ family, C-terminal domain RC12_RS03315 PF00091 Tubulin/FtsZ family, GTPase domain RC12_RS03320 PF00460 Flagella basal body rod protein RC12_RS03320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC12_RS03325 PF00460 Flagella basal body rod protein RC12_RS03325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC12_RS03330 PF00120 Glutamine synthetase, catalytic domain RC12_RS03330 PF03951 Glutamine synthetase, beta-Grasp domain RC12_RS03340 PF01136 Peptidase family U32 RC12_RS03345 PF00731 AIR carboxylase RC12_RS03355 PF02091 Glycyl-tRNA synthetase alpha subunit RC12_RS03360 PF01784 NIF3 (NGG1p interacting factor 3) RC12_RS03370 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RC12_RS03370 PF02390 Putative methyltransferase RC12_RS03375 PF00849 RNA pseudouridylate synthase RC12_RS03380 PF02978 Signal peptide binding domain RC12_RS03380 PF02881 SRP54-type protein, helical bundle domain RC12_RS03380 PF00448 SRP54-type protein, GTPase domain RC12_RS03385 PF00886 Ribosomal protein S16 RC12_RS03395 PF05239 PRC-barrel domain RC12_RS03395 PF01782 RimM N-terminal domain RC12_RS03400 PF01746 tRNA (Guanine-1)-methyltransferase RC12_RS03405 PF01245 Ribosomal protein L19 RC12_RS03410 PF00576 HIUase/Transthyretin family RC12_RS03415 PF01474 Class-II DAHP synthetase family RC12_RS03420 PF03960 ArsC family RC12_RS03425 PF14579 Helix-hairpin-helix motif RC12_RS03425 PF02811 PHP domain RC12_RS03425 PF07733 Bacterial DNA polymerase III alpha NTPase domain RC12_RS03425 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RC12_RS03430 PF01168 Alanine racemase, N-terminal domain RC12_RS03435 PF00669 Bacterial flagellin N-terminal helical region RC12_RS03445 PF05175 Methyltransferase small domain RC12_RS03445 PF17827 PrmC N-terminal domain RC12_RS03450 PF01435 Peptidase family M48 RC12_RS03460 PF00994 Probable molybdopterin binding domain RC12_RS03465 PF01544 CorA-like Mg2+ transporter protein RC12_RS03485 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS03505 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC12_RS03535 PF02875 Mur ligase family, glutamate ligase domain RC12_RS03535 PF08245 Mur ligase middle domain RC12_RS03550 PF07478 D-ala D-ala ligase C-terminus RC12_RS03550 PF01820 D-ala D-ala ligase N-terminus RC12_RS03555 PF07499 RuvA, C-terminal domain RC12_RS03555 PF01330 RuvA N terminal domain RC12_RS03565 PF03023 Lipid II flippase MurJ RC12_RS03570 PF01406 tRNA synthetases class I (C) catalytic domain RC12_RS03570 PF09190 DALR domain RC12_RS03575 PF00664 ABC transporter transmembrane region RC12_RS03575 PF00005 ABC transporter RC12_RS03580 PF01180 Dihydroorotate dehydrogenase RC12_RS03585 PF05193 Peptidase M16 inactive domain RC12_RS03585 PF00675 Insulinase (Peptidase family M16) RC12_RS03590 PF00701 Dihydrodipicolinate synthetase family RC12_RS03605 PF00753 Metallo-beta-lactamase superfamily RC12_RS03610 PF02540 NAD synthase RC12_RS03615 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RC12_RS03620 PF00291 Pyridoxal-phosphate dependent enzyme RC12_RS03625 PF02348 Cytidylyltransferase RC12_RS03640 PF01025 GrpE RC12_RS03645 PF00012 Hsp70 protein RC12_RS03685 PF00155 Aminotransferase class I and II RC12_RS03690 PF00132 Bacterial transferase hexapeptide (six repeats) RC12_RS03690 PF06426 Serine acetyltransferase, N-terminal RC12_RS03695 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RC12_RS03695 PF17810 Arginine decarboxylase helical bundle domain RC12_RS03695 PF17944 Arginine decarboxylase C-terminal helical extension RC12_RS03700 PF13393 Histidyl-tRNA synthetase RC12_RS03700 PF03129 Anticodon binding domain RC12_RS03705 PF02223 Thymidylate kinase RC12_RS03710 PF01467 Cytidylyltransferase-like RC12_RS03715 PF02441 Flavoprotein RC12_RS03725 PF03180 NLPA lipoprotein RC12_RS03730 PF03180 NLPA lipoprotein RC12_RS03735 PF03180 NLPA lipoprotein RC12_RS03740 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS03745 PF00005 ABC transporter RC12_RS03745 PF09383 NIL domain RC12_RS03750 PF08264 Anticodon-binding domain of tRNA RC12_RS03750 PF00133 tRNA synthetases class I (I, L, M and V) RC12_RS03750 PF10458 Valyl tRNA synthetase tRNA binding arm RC12_RS03760 PF13361 UvrD-like helicase C-terminal domain RC12_RS03760 PF00580 UvrD/REP helicase N-terminal domain RC12_RS03770 PF08534 Redoxin RC12_RS03775 PF01568 Molydopterin dinucleotide binding domain RC12_RS03775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC12_RS03775 PF00384 Molybdopterin oxidoreductase RC12_RS03780 PF12838 4Fe-4S dicluster domain RC12_RS03780 PF12800 4Fe-4S binding domain RC12_RS03785 PF12801 4Fe-4S binding domain RC12_RS03785 PF13187 4Fe-4S dicluster domain RC12_RS03790 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) RC12_RS03820 PF13735 tRNA nucleotidyltransferase domain 2 putative RC12_RS03820 PF01743 Poly A polymerase head domain RC12_RS03820 PF12627 Probable RNA and SrmB- binding site of polymerase A RC12_RS03825 PF00551 Formyl transferase RC12_RS03825 PF01842 ACT domain RC12_RS03830 PF00266 Aminotransferase class-V RC12_RS03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC12_RS03840 PF00512 His Kinase A (phospho-acceptor) domain RC12_RS03850 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC12_RS03855 PF00813 FliP family RC12_RS03860 PF00132 Bacterial transferase hexapeptide (six repeats) RC12_RS03860 PF12804 MobA-like NTP transferase domain RC12_RS03865 PF04127 DNA / pantothenate metabolism flavoprotein RC12_RS03865 PF02441 Flavoprotein RC12_RS03875 PF01255 Putative undecaprenyl diphosphate synthase RC12_RS03890 PF01416 tRNA pseudouridine synthase RC12_RS03895 PF00291 Pyridoxal-phosphate dependent enzyme RC12_RS03895 PF13291 ACT domain RC12_RS03910 PF05958 tRNA (Uracil-5-)-methyltransferase RC12_RS03915 PF03553 Na+/H+ antiporter family RC12_RS03920 PF00106 short chain dehydrogenase RC12_RS03930 PF11791 Aconitate B N-terminal domain RC12_RS03930 PF06434 Aconitate hydratase 2 N-terminus RC12_RS03930 PF00330 Aconitase family (aconitate hydratase) RC12_RS03935 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RC12_RS03935 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RC12_RS03945 PF09334 tRNA synthetases class I (M) RC12_RS03945 PF00133 tRNA synthetases class I (I, L, M and V) RC12_RS03945 PF01588 Putative tRNA binding domain RC12_RS03955 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RC12_RS03980 PF00749 tRNA synthetases class I (E and Q), catalytic domain RC12_RS03985 PF00149 Calcineurin-like phosphoesterase RC12_RS03990 PF02666 Phosphatidylserine decarboxylase RC12_RS03995 PF01312 FlhB HrpN YscU SpaS Family RC12_RS04005 PF07690 Major Facilitator Superfamily RC12_RS04020 PF00202 Aminotransferase class-III RC12_RS04030 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RC12_RS04030 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RC12_RS04035 PF10502 Signal peptidase, peptidase S26 RC12_RS04040 PF00994 Probable molybdopterin binding domain RC12_RS04040 PF03454 MoeA C-terminal region (domain IV) RC12_RS04040 PF03453 MoeA N-terminal region (domain I and II) RC12_RS04045 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RC12_RS04060 PF00591 Glycosyl transferase family, a/b domain RC12_RS04060 PF00117 Glutamine amidotransferase class-I RC12_RS04060 PF02885 Glycosyl transferase family, helical bundle domain RC12_RS04065 PF00425 chorismate binding enzyme RC12_RS04065 PF04715 Anthranilate synthase component I, N terminal region RC12_RS04070 PF18644 Phage integrase SAM-like domain RC12_RS04070 PF00589 Phage integrase family RC12_RS04080 PF02600 Disulfide bond formation protein DsbB RC12_RS04085 PF17425 Arylsulfotransferase Ig-like domain RC12_RS04085 PF05935 Arylsulfotransferase (ASST) RC12_RS04095 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RC12_RS04125 PF00771 FHIPEP family RC12_RS04130 PF02082 Transcriptional regulator RC12_RS04135 PF00312 Ribosomal protein S15 RC12_RS04140 PF09397 Ftsk gamma domain RC12_RS04140 PF17854 FtsK alpha domain RC12_RS04140 PF01580 FtsK/SpoIIIE family RC12_RS04145 PF00669 Bacterial flagellin N-terminal helical region RC12_RS04145 PF00700 Bacterial flagellin C-terminal helical region RC12_RS04160 PF16326 ABC transporter C-terminal domain RC12_RS04160 PF00005 ABC transporter RC12_RS04160 PF12848 ABC transporter RC12_RS04165 PF00989 PAS fold RC12_RS04165 PF00512 His Kinase A (phospho-acceptor) domain RC12_RS04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC12_RS04165 PF16736 Single Cache-like RC12_RS04170 PF00486 Transcriptional regulatory protein, C terminal RC12_RS04170 PF00072 Response regulator receiver domain RC12_RS04175 PF01842 ACT domain RC12_RS04175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC12_RS04175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC12_RS04185 PF00575 S1 RNA binding domain RC12_RS04190 PF02401 LytB protein RC12_RS04195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RC12_RS04200 PF03483 B3/4 domain RC12_RS04200 PF03484 tRNA synthetase B5 domain RC12_RS04200 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RC12_RS04200 PF01588 Putative tRNA binding domain RC12_RS04200 PF03147 Ferredoxin-fold anticodon binding domain RC12_RS04205 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RC12_RS04205 PF01409 tRNA synthetases class II core domain (F) RC12_RS04210 PF01230 HIT domain RC12_RS04225 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS04230 PF00005 ABC transporter RC12_RS04235 PF01235 Sodium:alanine symporter family RC12_RS04240 PF00588 SpoU rRNA Methylase family RC12_RS04245 PF01168 Alanine racemase, N-terminal domain RC12_RS04245 PF00842 Alanine racemase, C-terminal domain RC12_RS04275 PF02630 SCO1/SenC RC12_RS04280 PF00291 Pyridoxal-phosphate dependent enzyme RC12_RS04285 PF00216 Bacterial DNA-binding protein RC12_RS04295 PF03061 Thioesterase superfamily RC12_RS04305 PF13722 5TM C-terminal transporter carbon starvation CstA RC12_RS04305 PF02554 Carbon starvation protein CstA RC12_RS04310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RC12_RS04310 PF14572 Phosphoribosyl synthetase-associated domain RC12_RS04315 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS04320 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS04325 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC12_RS04330 PF00005 ABC transporter RC12_RS04335 PF01739 CheR methyltransferase, SAM binding domain RC12_RS04340 PF00072 Response regulator receiver domain RC12_RS04340 PF01339 CheB methylesterase RC12_RS04345 PF02502 Ribose/Galactose Isomerase RC12_RS04355 PF00156 Phosphoribosyl transferase domain RC12_RS04365 PF00883 Cytosol aminopeptidase family, catalytic domain RC12_RS04370 PF01926 50S ribosome-binding GTPase RC12_RS04370 PF06071 Protein of unknown function (DUF933) RC12_RS04375 PF00206 Lyase RC12_RS04375 PF14698 Argininosuccinate lyase C-terminal RC12_RS04380 PF01293 Phosphoenolpyruvate carboxykinase RC12_RS04385 PF02436 Conserved carboxylase domain RC12_RS04385 PF00364 Biotin-requiring enzyme RC12_RS04385 PF00682 HMGL-like RC12_RS04390 PF00209 Sodium:neurotransmitter symporter family RC12_RS04395 PF00209 Sodium:neurotransmitter symporter family RC12_RS04400 PF00137 ATP synthase subunit C RC12_RS04435 PF06986 Type-1V conjugative transfer system mating pair stabilisation RC12_RS04445 PF13193 AMP-binding enzyme C-terminal domain RC12_RS04445 PF01553 Acyltransferase RC12_RS04445 PF00501 AMP-binding enzyme RC12_RS04490 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS04500 PF07516 SecA Wing and Scaffold domain RC12_RS04500 PF01043 SecA preprotein cross-linking domain RC12_RS04500 PF07517 SecA DEAD-like domain RC12_RS04500 PF02810 SEC-C motif RC12_RS04505 PF03548 Outer membrane lipoprotein carrier protein LolA RC12_RS04515 PF02689 Helicase RC12_RS04515 PF05970 PIF1-like helicase RC12_RS04525 PF00795 Carbon-nitrogen hydrolase RC12_RS04530 PF16916 Dimerisation domain of Zinc Transporter RC12_RS04530 PF01545 Cation efflux family RC12_RS04535 PF04371 Porphyromonas-type peptidyl-arginine deiminase RC12_RS04545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC12_RS04545 PF00672 HAMP domain RC12_RS04550 PF01808 AICARFT/IMPCHase bienzyme RC12_RS04550 PF02142 MGS-like domain RC12_RS04555 PF00226 DnaJ domain RC12_RS04555 PF05099 Tellurite resistance protein TerB RC12_RS04560 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RC12_RS04560 PF02769 AIR synthase related protein, C-terminal domain RC12_RS04560 PF00586 AIR synthase related protein, N-terminal domain RC12_RS04565 PF10396 GTP-binding protein TrmE N-terminus RC12_RS04565 PF12631 MnmE helical domain RC12_RS04565 PF01926 50S ribosome-binding GTPase RC12_RS04575 PF14849 YidC periplasmic domain RC12_RS04575 PF02096 60Kd inner membrane protein RC12_RS04580 PF01809 Putative membrane protein insertion efficiency factor RC12_RS04585 PF00825 Ribonuclease P RC12_RS04590 PF00468 Ribosomal protein L34 RC12_RS04610 PF03061 Thioesterase superfamily RC12_RS04640 PF01814 Hemerythrin HHE cation binding domain RC12_RS04645 PF08003 Protein of unknown function (DUF1698) RC12_RS04660 PF00565 Staphylococcal nuclease homologue RC12_RS04665 PF07687 Peptidase dimerisation domain RC12_RS04665 PF01546 Peptidase family M20/M25/M40 RC12_RS04670 PF00083 Sugar (and other) transporter RC12_RS04670 PF08946 Osmosensory transporter coiled coil RC12_RS04675 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC12_RS04680 PF16668 Adhesin from Campylobacter RC12_RS04685 PF03883 Peroxide stress protein YaaA RC12_RS04690 PF01546 Peptidase family M20/M25/M40 RC12_RS04690 PF07687 Peptidase dimerisation domain RC12_RS04705 PF07690 Major Facilitator Superfamily RC12_RS04720 PF17437 Family of unknown function (DUF5416) RC12_RS04725 PF13183 4Fe-4S dicluster domain RC12_RS04725 PF02754 Cysteine-rich domain RC12_RS04725 PF02665 Nitrate reductase gamma subunit RC12_RS04730 PF06969 HemN C-terminal domain RC12_RS04730 PF04055 Radical SAM superfamily RC12_RS04735 PF10788 Protein of unknown function (DUF2603) RC12_RS04740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RC12_RS04740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RC12_RS04745 PF00490 Delta-aminolevulinic acid dehydratase RC12_RS04750 PF00925 GTP cyclohydrolase II RC12_RS04755 PF02527 rRNA small subunit methyltransferase G RC12_RS04765 PF03601 Conserved hypothetical protein 698 RC12_RS04770 PF03466 LysR substrate binding domain RC12_RS04770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC12_RS04775 PF04542 Sigma-70 region 2 RC12_RS04775 PF04539 Sigma-70 region 3 RC12_RS04775 PF00140 Sigma-70 factor, region 1.2 RC12_RS04775 PF04545 Sigma-70, region 4 RC12_RS04795 PF17862 AAA+ lid domain RC12_RS04795 PF00004 ATPase family associated with various cellular activities (AAA) RC12_RS04795 PF06480 FtsH Extracellular RC12_RS04795 PF01434 Peptidase family M41 RC12_RS04800 PF00919 Uncharacterized protein family UPF0004 RC12_RS04800 PF04055 Radical SAM superfamily RC12_RS04810 PF01761 3-dehydroquinate synthase RC12_RS04820 PF01702 Queuine tRNA-ribosyltransferase RC12_RS04840 PF05140 ResB-like family RC12_RS04840 PF01578 Cytochrome C assembly protein RC12_RS04845 PF00005 ABC transporter RC12_RS04850 PF00005 ABC transporter RC12_RS04850 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC12_RS04855 PF02653 Branched-chain amino acid transport system / permease component RC12_RS04855 PF11862 Domain of unknown function (DUF3382) RC12_RS04860 PF02653 Branched-chain amino acid transport system / permease component RC12_RS04865 PF13458 Periplasmic binding protein RC12_RS04870 PF13458 Periplasmic binding protein RC12_RS04890 PF01118 Semialdehyde dehydrogenase, NAD binding domain RC12_RS04890 PF02774 Semialdehyde dehydrogenase, dimerisation domain RC12_RS04895 PF00072 Response regulator receiver domain RC12_RS04895 PF00158 Sigma-54 interaction domain RC12_RS04910 PF03989 DNA gyrase C-terminal domain, beta-propeller RC12_RS04910 PF00521 DNA gyrase/topoisomerase IV, subunit A RC12_RS04925 PF00679 Elongation factor G C-terminus RC12_RS04925 PF00009 Elongation factor Tu GTP binding domain RC12_RS04925 PF03144 Elongation factor Tu domain 2 RC12_RS04925 PF06421 GTP-binding protein LepA C-terminus RC12_RS04935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC12_RS04935 PF00529 HlyD membrane-fusion protein of T1SS RC12_RS04940 PF00873 AcrB/AcrD/AcrF family RC12_RS04950 PF04376 Arginine-tRNA-protein transferase, N terminus RC12_RS04950 PF04377 Arginine-tRNA-protein transferase, C terminus RC12_RS04960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC12_RS04960 PF00289 Biotin carboxylase, N-terminal domain RC12_RS04960 PF02785 Biotin carboxylase C-terminal domain RC12_RS04965 PF01098 Cell cycle protein RC12_RS04970 PF04101 Glycosyltransferase family 28 C-terminal domain RC12_RS04970 PF03033 Glycosyltransferase family 28 N-terminal domain RC12_RS04985 PF12833 Helix-turn-helix domain RC12_RS04990 PF02581 Thiamine monophosphate synthase RC12_RS04995 PF04055 Radical SAM superfamily RC12_RS04995 PF06968 Biotin and Thiamin Synthesis associated domain RC12_RS05000 PF05690 Thiazole biosynthesis protein ThiG RC12_RS05005 PF00581 Rhodanese-like domain RC12_RS05005 PF00899 ThiF family RC12_RS05020 PF07687 Peptidase dimerisation domain RC12_RS05020 PF01546 Peptidase family M20/M25/M40 RC12_RS05030 PF02146 Sir2 family RC12_RS05035 PF00488 MutS domain V RC12_RS05035 PF01713 Smr domain RC12_RS05045 PF08245 Mur ligase middle domain RC12_RS05045 PF02875 Mur ligase family, glutamate ligase domain RC12_RS05045 PF01225 Mur ligase family, catalytic domain RC12_RS05060 PF00478 IMP dehydrogenase / GMP reductase domain RC12_RS05060 PF00571 CBS domain RC12_RS05065 PF01425 Amidase RC12_RS05075 PF00133 tRNA synthetases class I (I, L, M and V) RC12_RS05075 PF08264 Anticodon-binding domain of tRNA RC12_RS05080 PF02464 Competence-damaged protein RC12_RS05080 PF00994 Probable molybdopterin binding domain RC12_RS05090 PF00881 Nitroreductase family RC12_RS05095 PF00881 Nitroreductase family RC12_RS05100 PF01066 CDP-alcohol phosphatidyltransferase RC12_RS05105 PF17820 PDZ domain RC12_RS05105 PF02163 Peptidase family M50 RC12_RS05110 PF04393 Protein of unknown function (DUF535) RC12_RS05115 PF01250 Ribosomal protein S6 RC12_RS05120 PF00436 Single-strand binding protein family RC12_RS05125 PF01084 Ribosomal protein S18 RC12_RS05130 PF05362 Lon protease (S16) C-terminal proteolytic domain RC12_RS05130 PF02190 ATP-dependent protease La (LON) substrate-binding domain RC12_RS05130 PF00004 ATPase family associated with various cellular activities (AAA) RC12_RS05140 PF02623 FliW protein RC12_RS05145 PF14748 Pyrroline-5-carboxylate reductase dimerisation RC12_RS05145 PF03807 NADP oxidoreductase coenzyme F420-dependent RC12_RS05170 PF02581 Thiamine monophosphate synthase RC12_RS05175 PF08543 Phosphomethylpyrimidine kinase RC12_RS05190 PF00270 DEAD/DEAH box helicase RC12_RS05190 PF03461 TRCF domain RC12_RS05190 PF02559 CarD-like/TRCF domain RC12_RS05190 PF17757 UvrB interaction domain RC12_RS05190 PF00271 Helicase conserved C-terminal domain RC12_RS05200 PF01551 Peptidase family M23 RC12_RS05200 PF04225 Opacity-associated protein A LysM-like domain RC12_RS05205 PF02875 Mur ligase family, glutamate ligase domain RC12_RS05205 PF08245 Mur ligase middle domain RC12_RS05220 PF00133 tRNA synthetases class I (I, L, M and V) RC12_RS05220 PF13603 Leucyl-tRNA synthetase, Domain 2 RC12_RS05220 PF09334 tRNA synthetases class I (M) RC12_RS05225 PF02355 Protein export membrane protein RC12_RS05225 PF07549 SecD/SecF GG Motif RC12_RS05230 PF02355 Protein export membrane protein RC12_RS05235 PF02699 Preprotein translocase subunit RC12_RS05245 PF02772 S-adenosylmethionine synthetase, central domain RC12_RS05245 PF02773 S-adenosylmethionine synthetase, C-terminal domain RC12_RS05245 PF00438 S-adenosylmethionine synthetase, N-terminal domain RC12_RS05250 PF00375 Sodium:dicarboxylate symporter family RC12_RS05255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RC12_RS05255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RC12_RS05260 PF01432 Peptidase family M3 RC12_RS05260 PF08439 Oligopeptidase F RC12_RS05270 PF13361 UvrD-like helicase C-terminal domain RC12_RS05270 PF00580 UvrD/REP helicase N-terminal domain RC12_RS05275 PF01509 TruB family pseudouridylate synthase (N terminal domain) RC12_RS05280 PF02599 Global regulator protein family RC12_RS05285 PF00288 GHMP kinases N terminal domain RC12_RS05290 PF01668 SmpB protein RC12_RS05300 PF02617 ATP-dependent Clp protease adaptor protein ClpS RC12_RS05305 PF02861 Clp amino terminal domain, pathogenicity island component RC12_RS05305 PF07724 AAA domain (Cdc48 subfamily) RC12_RS05305 PF00004 ATPase family associated with various cellular activities (AAA) RC12_RS05305 PF17871 AAA lid domain RC12_RS05305 PF10431 C-terminal, D2-small domain, of ClpB protein RC12_RS05310 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RC12_RS05315 PF13426 PAS domain RC12_RS05315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC12_RS05315 PF08447 PAS fold RC12_RS05320 PF01914 MarC family integral membrane protein RC12_RS05325 PF01641 SelR domain RC12_RS05330 PF04305 Protein of unknown function (DUF455) RC12_RS05335 PF01066 CDP-alcohol phosphatidyltransferase RC12_RS05345 PF17862 AAA+ lid domain RC12_RS05345 PF01434 Peptidase family M41 RC12_RS05345 PF00004 ATPase family associated with various cellular activities (AAA) RC12_RS05355 PF00072 Response regulator receiver domain RC12_RS05365 PF02719 Polysaccharide biosynthesis protein RC12_RS05370 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC12_RS05375 PF00132 Bacterial transferase hexapeptide (six repeats) RC12_RS05375 PF17836 PglD N-terminal domain RC12_RS05380 PF02397 Bacterial sugar transferase RC12_RS05385 PF13477 Glycosyl transferase 4-like RC12_RS05385 PF00534 Glycosyl transferases group 1 RC12_RS05390 PF02516 Oligosaccharyl transferase STT3 subunit RC12_RS05390 PF18527 STT3/PglB C-terminal beta-barrel domain RC12_RS05395 PF00534 Glycosyl transferases group 1 RC12_RS05395 PF13439 Glycosyltransferase Family 4 RC12_RS05400 PF00535 Glycosyl transferase family 2 RC12_RS05405 PF13439 Glycosyltransferase Family 4 RC12_RS05405 PF00534 Glycosyl transferases group 1 RC12_RS05410 PF00005 ABC transporter RC12_RS05410 PF00664 ABC transporter transmembrane region RC12_RS05415 PF16363 GDP-mannose 4,6 dehydratase RC12_RS05425 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RC12_RS05430 PF03279 Bacterial lipid A biosynthesis acyltransferase RC12_RS05435 PF00535 Glycosyl transferase family 2 RC12_RS05440 PF00483 Nucleotidyl transferase RC12_RS05445 PF16363 GDP-mannose 4,6 dehydratase RC12_RS05455 PF05523 WxcM-like, C-terminal RC12_RS05460 PF00132 Bacterial transferase hexapeptide (six repeats) RC12_RS05465 PF00551 Formyl transferase RC12_RS05465 PF02911 Formyl transferase, C-terminal domain RC12_RS05470 PF00535 Glycosyl transferase family 2 RC12_RS05475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC12_RS05505 PF00535 Glycosyl transferase family 2 RC12_RS05515 PF03062 MBOAT, membrane-bound O-acyltransferase family RC12_RS05525 PF13580 SIS domain RC12_RS05530 PF00294 pfkB family carbohydrate kinase RC12_RS05530 PF01467 Cytidylyltransferase-like RC12_RS05535 PF01370 NAD dependent epimerase/dehydratase family RC12_RS05540 PF08645 Polynucleotide kinase 3 phosphatase RC12_RS05555 PF00403 Heavy-metal-associated domain RC12_RS05560 PF07498 Rho termination factor, N-terminal domain RC12_RS05560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC12_RS05560 PF07497 Rho termination factor, RNA-binding domain RC12_RS05565 PF12169 DNA polymerase III subunits gamma and tau domain III RC12_RS05565 PF12170 DNA polymerase III tau subunit V interacting with alpha RC12_RS05575 PF00403 Heavy-metal-associated domain RC12_RS05595 PF06738 Putative threonine/serine exporter RC12_RS05595 PF12821 Threonine/Serine exporter, ThrE RC12_RS05605 PF09335 SNARE associated Golgi protein RC12_RS05620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RC12_RS05625 PF01709 Transcriptional regulator RC12_RS05630 PF00893 Small Multidrug Resistance protein RC12_RS05635 PF00893 Small Multidrug Resistance protein RC12_RS05640 PF05746 DALR anticodon binding domain RC12_RS05640 PF00750 tRNA synthetases class I (R) RC12_RS05640 PF03485 Arginyl tRNA synthetase N terminal domain RC12_RS05645 PF02416 mttA/Hcf106 family RC12_RS05650 PF00625 Guanylate kinase RC12_RS05660 PF01311 Bacterial export proteins, family 1 RC12_RS05665 PF00005 ABC transporter RC12_RS05670 PF00889 Elongation factor TS RC12_RS05675 PF00318 Ribosomal protein S2 RC12_RS05690 PF00033 Cytochrome b/b6/petB RC12_RS05690 PF00032 Cytochrome b(C-terminal)/b6/petD RC12_RS05695 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RC12_RS05695 PF00355 Rieske [2Fe-2S] domain RC12_RS05700 PF02040 Arsenical pump membrane protein RC12_RS05705 PF01134 Glucose inhibited division protein A RC12_RS05705 PF13932 GidA associated domain RC12_RS05715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC12_RS05715 PF08447 PAS fold RC12_RS05715 PF13426 PAS domain RC12_RS05725 PF00375 Sodium:dicarboxylate symporter family RC12_RS05735 PF01384 Phosphate transporter family RC12_RS05740 PF01979 Amidohydrolase family RC12_RS05745 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RC12_RS05745 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RC12_RS05750 PF02934 GatB/GatE catalytic domain RC12_RS05750 PF02637 GatB domain RC12_RS05755 PF02664 S-Ribosylhomocysteinase (LuxS) RC12_RS05760 PF03171 2OG-Fe(II) oxygenase superfamily RC12_RS05760 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RC12_RS05765 PF03180 NLPA lipoprotein RC12_RS05770 PF08267 Cobalamin-independent synthase, N-terminal domain RC12_RS05770 PF01717 Cobalamin-independent synthase, Catalytic domain RC12_RS05775 PF02219 Methylenetetrahydrofolate reductase RC12_RS05785 PF00119 ATP synthase A chain RC12_RS05790 PF18073 Rubredoxin metal binding domain RC12_RS05795 PF00448 SRP54-type protein, GTPase domain RC12_RS05810 PF01966 HD domain RC12_RS05810 PF12072 Domain of unknown function (DUF3552) RC12_RS05825 PF03631 Virulence factor BrkB RC12_RS05830 PF02913 FAD linked oxidases, C-terminal domain RC12_RS05830 PF01565 FAD binding domain RC12_RS05840 PF01476 LysM domain RC12_RS05840 PF01551 Peptidase family M23 RC12_RS05840 PF08525 Opacity-associated protein A N-terminal motif RC12_RS05850 PF02578 Multi-copper polyphenol oxidoreductase laccase RC12_RS05855 PF00677 Lumazine binding domain RC12_RS05865 PF00166 Chaperonin 10 Kd subunit RC12_RS05870 PF00118 TCP-1/cpn60 chaperonin family RC12_RS05875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC12_RS05880 PF00072 Response regulator receiver domain RC12_RS05880 PF00486 Transcriptional regulatory protein, C terminal RC12_RS05885 PF01814 Hemerythrin HHE cation binding domain RC12_RS05905 PF00072 Response regulator receiver domain RC12_RS05905 PF00486 Transcriptional regulatory protein, C terminal RC12_RS05910 PF13180 PDZ domain RC12_RS05910 PF17820 PDZ domain RC12_RS05915 PF01556 DnaJ C terminal domain RC12_RS05915 PF00226 DnaJ domain RC12_RS05920 PF13411 MerR HTH family regulatory protein RC12_RS05925 PF02254 TrkA-N domain RC12_RS05925 PF00999 Sodium/hydrogen exchanger family RC12_RS05935 PF13419 Haloacid dehalogenase-like hydrolase RC12_RS05940 PF02092 Glycyl-tRNA synthetase beta subunit RC12_RS05945 PF01551 Peptidase family M23 RC12_RS05955 PF02541 Ppx/GppA phosphatase family RC12_RS05960 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RC12_RS05965 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RC12_RS05975 PF07690 Major Facilitator Superfamily RC12_RS05985 PF01208 Uroporphyrinogen decarboxylase (URO-D) RC12_RS05990 PF04055 Radical SAM superfamily RC12_RS06000 PF08459 UvrC Helix-hairpin-helix N-terminal RC12_RS06000 PF02151 UvrB/uvrC motif RC12_RS06000 PF01541 GIY-YIG catalytic domain RC12_RS06010 PF00117 Glutamine amidotransferase class-I RC12_RS06010 PF00958 GMP synthase C terminal domain RC12_RS06010 PF02540 NAD synthase RC12_RS06020 PF02843 Phosphoribosylglycinamide synthetase, C domain RC12_RS06020 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RC12_RS06020 PF02844 Phosphoribosylglycinamide synthetase, N domain RC12_RS06035 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RC12_RS06035 PF00013 KH domain RC12_RS06035 PF00575 S1 RNA binding domain RC12_RS06035 PF03725 3' exoribonuclease family, domain 2 RC12_RS06035 PF01138 3' exoribonuclease family, domain 1 RC12_RS06055 PF07690 Major Facilitator Superfamily RC12_RS06060 PF01451 Low molecular weight phosphotyrosine protein phosphatase RC12_RS06065 PF05538 Campylobacter major outer membrane protein RC12_RS06070 PF00226 DnaJ domain RC12_RS06070 PF01556 DnaJ C terminal domain RC12_RS06070 PF00684 DnaJ central domain RC12_RS06075 PF00486 Transcriptional regulatory protein, C terminal RC12_RS06075 PF00072 Response regulator receiver domain RC12_RS06085 PF02132 RecR protein RC12_RS06085 PF13662 Toprim domain RC12_RS06090 PF01750 Hydrogenase maturation protease RC12_RS06095 PF01292 Prokaryotic cytochrome b561 RC12_RS06100 PF00374 Nickel-dependent hydrogenase RC12_RS06105 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RC12_RS06105 PF10518 TAT (twin-arginine translocation) pathway signal sequence RC12_RS06105 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RC12_RS06110 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RC12_RS06110 PF01266 FAD dependent oxidoreductase RC12_RS06115 PF11741 AMIN domain RC12_RS06115 PF01520 N-acetylmuramoyl-L-alanine amidase RC12_RS06125 PF00579 tRNA synthetases class I (W and Y) RC12_RS06130 PF02824 TGS domain RC12_RS06130 PF13291 ACT domain RC12_RS06130 PF04607 Region found in RelA / SpoT proteins RC12_RS06135 PF01192 RNA polymerase Rpb6 RC12_RS06140 PF00696 Amino acid kinase family RC12_RS06155 PF00005 ABC transporter RC12_RS06155 PF09383 NIL domain RC12_RS06160 PF02390 Putative methyltransferase RC12_RS06170 PF00849 RNA pseudouridylate synthase RC12_RS06170 PF01479 S4 domain RC12_RS06175 PF01098 Cell cycle protein RC12_RS06190 PF02386 Cation transport protein RC12_RS06195 PF02080 TrkA-C domain RC12_RS06195 PF02254 TrkA-N domain RC12_RS06200 PF02621 Menaquinone biosynthesis RC12_RS06210 PF01515 Phosphate acetyl/butaryl transferase RC12_RS06210 PF03949 Malic enzyme, NAD binding domain RC12_RS06210 PF00390 Malic enzyme, N-terminal domain RC12_RS06215 PF00749 tRNA synthetases class I (E and Q), catalytic domain RC12_RS06225 PF00289 Biotin carboxylase, N-terminal domain RC12_RS06225 PF02785 Biotin carboxylase C-terminal domain RC12_RS06225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC12_RS06230 PF00364 Biotin-requiring enzyme RC12_RS06235 PF00692 dUTPase RC12_RS06240 PF02719 Polysaccharide biosynthesis protein RC12_RS06245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC12_RS06250 PF16254 Domain of unknown function (DUF4910) RC12_RS06250 PF09940 Domain of unknown function (DUF2172) RC12_RS06250 PF16221 winged helix-turn-helix RC12_RS06260 PF00501 AMP-binding enzyme RC12_RS06260 PF13193 AMP-binding enzyme C-terminal domain RC12_RS06260 PF00668 Condensation domain RC12_RS06260 PF00550 Phosphopantetheine attachment site RC12_RS06265 PF02911 Formyl transferase, C-terminal domain RC12_RS06265 PF00551 Formyl transferase RC12_RS06280 PF02348 Cytidylyltransferase RC12_RS06290 PF13302 Acetyltransferase (GNAT) domain RC12_RS06295 PF13302 Acetyltransferase (GNAT) domain RC12_RS06300 PF00977 Histidine biosynthesis protein RC12_RS06305 PF00117 Glutamine amidotransferase class-I RC12_RS06315 PF03102 NeuB family RC12_RS06315 PF08666 SAF domain RC12_RS06335 PF00700 Bacterial flagellin C-terminal helical region RC12_RS06335 PF07196 Flagellin hook IN motif RC12_RS06335 PF00669 Bacterial flagellin N-terminal helical region RC12_RS06340 PF07196 Flagellin hook IN motif RC12_RS06340 PF00669 Bacterial flagellin N-terminal helical region RC12_RS06340 PF00700 Bacterial flagellin C-terminal helical region RC12_RS06355 PF08334 Type II secretion system (T2SS), protein G RC12_RS06355 PF07963 Prokaryotic N-terminal methylation motif RC12_RS06360 PF00814 Glycoprotease family RC12_RS06370 PF13288 DXP reductoisomerase C-terminal domain RC12_RS06370 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RC12_RS06370 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RC12_RS06385 PF05670 NFACT protein RNA binding domain RC12_RS06390 PF12804 MobA-like NTP transferase domain RC12_RS06395 PF02253 Phospholipase A1 RC12_RS06400 PF01032 FecCD transport family RC12_RS06405 PF01032 FecCD transport family RC12_RS06410 PF00005 ABC transporter RC12_RS06415 PF01497 Periplasmic binding protein RC12_RS06430 PF02335 Cytochrome c552 RC12_RS06435 PF03264 NapC/NirT cytochrome c family, N-terminal region RC12_RS06440 PF13089 Polyphosphate kinase N-terminal domain RC12_RS06440 PF17941 Polyphosphate kinase C-terminal domain 1 RC12_RS06440 PF02503 Polyphosphate kinase middle domain RC12_RS06440 PF13090 Polyphosphate kinase C-terminal domain 2 RC12_RS06465 PF05496 Holliday junction DNA helicase RuvB P-loop domain RC12_RS06465 PF05491 RuvB C-terminal winged helix domain RC12_RS06465 PF17864 RuvB AAA lid domain RC12_RS06470 PF01594 AI-2E family transporter RC12_RS06475 PF00206 Lyase RC12_RS06475 PF10415 Fumarase C C-terminus RC12_RS06480 PF01380 SIS domain RC12_RS06490 PF04055 Radical SAM superfamily RC12_RS06495 PF00860 Permease family RC12_RS06500 PF00156 Phosphoribosyl transferase domain RC12_RS06505 PF04333 MlaA lipoprotein RC12_RS06520 PF01725 Ham1 family RC12_RS06525 PF07690 Major Facilitator Superfamily RC12_RS06535 PF03841 L-seryl-tRNA selenium transferase RC12_RS06540 PF03144 Elongation factor Tu domain 2 RC12_RS06540 PF09106 Elongation factor SelB, winged helix RC12_RS06540 PF00009 Elongation factor Tu GTP binding domain RC12_RS06540 PF09107 Elongation factor SelB, winged helix RC12_RS06545 PF13098 Thioredoxin-like domain RC12_RS06555 PF00258 Flavodoxin RC12_RS06570 PF00199 Catalase RC12_RS06570 PF06628 Catalase-related immune-responsive RC12_RS06580 PF13309 HTH domain RC12_RS06580 PF08348 YheO-like PAS domain RC12_RS06585 PF01042 Endoribonuclease L-PSP RC12_RS06590 PF03606 C4-dicarboxylate anaerobic carrier RC12_RS06595 PF01053 Cys/Met metabolism PLP-dependent enzyme RC12_RS06600 PF10397 Adenylosuccinate lyase C-terminus RC12_RS06600 PF00206 Lyase RC12_RS06610 PF04023 FeoA domain RC12_RS06615 PF07664 Ferrous iron transport protein B C terminus RC12_RS06615 PF07670 Nucleoside recognition RC12_RS06615 PF02421 Ferrous iron transport protein B RC12_RS06620 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RC12_RS06620 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RC12_RS06620 PF10518 TAT (twin-arginine translocation) pathway signal sequence RC12_RS06630 PF00121 Triosephosphate isomerase RC12_RS06635 PF00162 Phosphoglycerate kinase RC12_RS06640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RC12_RS06640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RC12_RS06645 PF01467 Cytidylyltransferase-like RC12_RS06660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RC12_RS06660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RC12_RS06660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RC12_RS06660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RC12_RS06665 PF03748 Flagellar basal body-associated protein FliL RC12_RS06670 PF01648 4'-phosphopantetheinyl transferase superfamily RC12_RS06680 PF00067 Cytochrome P450 RC12_RS06690 PF05159 Capsule polysaccharide biosynthesis protein RC12_RS06695 PF05159 Capsule polysaccharide biosynthesis protein RC12_RS06705 PF00483 Nucleotidyl transferase RC12_RS06710 PF00117 Glutamine amidotransferase class-I RC12_RS06715 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RC12_RS06715 PF00391 PEP-utilising enzyme, mobile domain RC12_RS06720 PF01209 ubiE/COQ5 methyltransferase family RC12_RS06795 PF13419 Haloacid dehalogenase-like hydrolase RC12_RS06810 PF00483 Nucleotidyl transferase RC12_RS06815 PF13580 SIS domain RC12_RS06820 PF00288 GHMP kinases N terminal domain RC12_RS06820 PF08544 GHMP kinases C terminal RC12_RS06825 PF01370 NAD dependent epimerase/dehydratase family RC12_RS06835 PF01370 NAD dependent epimerase/dehydratase family RC12_RS06840 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RC12_RS06845 PF01501 Glycosyl transferase family 8 RC12_RS06845 PF00535 Glycosyl transferase family 2 RC12_RS06860 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RC12_RS06860 PF00535 Glycosyl transferase family 2 RC12_RS06870 PF01380 SIS domain RC12_RS06870 PF00571 CBS domain RC12_RS06875 PF10531 SLBB domain RC12_RS06875 PF02563 Polysaccharide biosynthesis/export protein RC12_RS06885 PF00005 ABC transporter RC12_RS06890 PF01061 ABC-2 type transporter RC12_RS06915 PF01171 PP-loop family RC12_RS06920 PF04055 Radical SAM superfamily RC12_RS06920 PF00919 Uncharacterized protein family UPF0004 RC12_RS06925 PF03462 PCRF domain RC12_RS06925 PF00472 RF-1 domain RC12_RS06935 PF01142 tRNA pseudouridine synthase D (TruD) RC12_RS06940 PF00586 AIR synthase related protein, N-terminal domain RC12_RS06940 PF02769 AIR synthase related protein, C-terminal domain RC12_RS06960 PF02119 Flagellar P-ring protein RC12_RS06980 PF07196 Flagellin hook IN motif RC12_RS06980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC12_RS06990 PF01925 Sulfite exporter TauE/SafE RC12_RS06995 PF00482 Type II secretion system (T2SS), protein F RC12_RS07000 PF00437 Type II/IV secretion system protein RC12_RS07025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RC12_RS07025 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RC12_RS07025 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RC12_RS07025 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RC12_RS07025 PF10371 Domain of unknown function RC12_RS07030 PF13419 Haloacid dehalogenase-like hydrolase RC12_RS07035 PF00691 OmpA family RC12_RS07035 PF05736 OprF membrane domain RC12_RS07040 PF00380 Ribosomal protein S9/S16 RC12_RS07045 PF00572 Ribosomal protein L13 RC12_RS07050 PF00580 UvrD/REP helicase N-terminal domain RC12_RS07050 PF13361 UvrD-like helicase C-terminal domain RC12_RS07050 PF12705 PD-(D/E)XK nuclease superfamily RC12_RS07055 PF12705 PD-(D/E)XK nuclease superfamily RC12_RS07080 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RC12_RS07080 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RC12_RS07095 PF00115 Cytochrome C and Quinol oxidase polypeptide I RC12_RS07100 PF00486 Transcriptional regulatory protein, C terminal RC12_RS07100 PF00072 Response regulator receiver domain RC12_RS07105 PF08448 PAS fold RC12_RS07105 PF08447 PAS fold RC12_RS07105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC12_RS07115 PF00117 Glutamine amidotransferase class-I RC12_RS07115 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RC12_RS07135 PF00709 Adenylosuccinate synthetase RC12_RS07145 PF04143 Sulphur transport RC12_RS07150 PF01206 Sulfurtransferase TusA RC12_RS07155 PF00474 Sodium:solute symporter family RC12_RS07160 PF01619 Proline dehydrogenase RC12_RS07160 PF14850 DNA-binding domain of Proline dehydrogenase RC12_RS07160 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RC12_RS07160 PF00171 Aldehyde dehydrogenase family RC12_RS07165 PF02769 AIR synthase related protein, C-terminal domain RC12_RS07165 PF00586 AIR synthase related protein, N-terminal domain RC12_RS07175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC12_RS07175 PF02743 Cache domain RC12_RS07175 PF00672 HAMP domain RC12_RS07185 PF02634 FdhD/NarQ family RC12_RS07195 PF13247 4Fe-4S dicluster domain RC12_RS07200 PF01568 Molydopterin dinucleotide binding domain RC12_RS07200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC12_RS07200 PF00384 Molybdopterin oxidoreductase RC12_RS07205 PF00037 4Fe-4S binding domain RC12_RS07205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC12_RS07205 PF00384 Molybdopterin oxidoreductase RC12_RS07205 PF01568 Molydopterin dinucleotide binding domain RC12_RS07205 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RC12_RS07220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RC12_RS07225 PF07731 Multicopper oxidase RC12_RS07225 PF07732 Multicopper oxidase RC12_RS07235 PF02391 MoaE protein RC12_RS07240 PF03454 MoeA C-terminal region (domain IV) RC12_RS07240 PF00994 Probable molybdopterin binding domain RC12_RS07240 PF03453 MoeA N-terminal region (domain I and II) RC12_RS07245 PF09827 CRISPR associated protein Cas2 RC12_RS07265 PF00586 AIR synthase related protein, N-terminal domain RC12_RS07265 PF02769 AIR synthase related protein, C-terminal domain RC12_RS07270 PF01121 Dephospho-CoA kinase RC12_RS07275 PF01678 Diaminopimelate epimerase RC12_RS07280 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RC12_RS07290 PF00210 Ferritin-like domain RC12_RS07295 PF00342 Phosphoglucose isomerase RC12_RS07300 PF00483 Nucleotidyl transferase RC12_RS07310 PF00005 ABC transporter RC12_RS07315 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS07320 PF12849 PBP superfamily domain RC12_RS07325 PF03746 LamB/YcsF family RC12_RS07330 PF02682 Carboxyltransferase domain, subdomain C and D RC12_RS07335 PF02626 Carboxyltransferase domain, subdomain A and B RC12_RS07345 PF02525 Flavodoxin-like fold RC12_RS07350 PF01638 HxlR-like helix-turn-helix RC12_RS07360 PF08240 Alcohol dehydrogenase GroES-like domain RC12_RS07360 PF00107 Zinc-binding dehydrogenase RC12_RS07380 PF02661 Fic/DOC family RC12_RS07380 PF13784 Fic/DOC family N-terminal RC12_RS07400 PF07690 Major Facilitator Superfamily RC12_RS07405 PF13460 NAD(P)H-binding RC12_RS07410 PF01638 HxlR-like helix-turn-helix RC12_RS07420 PF01022 Bacterial regulatory protein, arsR family RC12_RS07435 PF00672 HAMP domain RC12_RS07435 PF17200 Single Cache domain 2 RC12_RS07435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC12_RS07450 PF00361 Proton-conducting membrane transporter RC12_RS07455 PF00361 Proton-conducting membrane transporter RC12_RS07460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RC12_RS07460 PF00361 Proton-conducting membrane transporter RC12_RS07465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RC12_RS07470 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RC12_RS07475 PF12838 4Fe-4S dicluster domain RC12_RS07480 PF00146 NADH dehydrogenase RC12_RS07485 PF01568 Molydopterin dinucleotide binding domain RC12_RS07485 PF12838 4Fe-4S dicluster domain RC12_RS07485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC12_RS07485 PF00384 Molybdopterin oxidoreductase RC12_RS07485 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RC12_RS07500 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RC12_RS07505 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RC12_RS07510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RC12_RS07515 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RC12_RS07520 PF00005 ABC transporter RC12_RS07525 PF00005 ABC transporter RC12_RS07525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC12_RS07530 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS07530 PF12911 N-terminal TM domain of oligopeptide transport permease C RC12_RS07540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC12_RS07545 PF00384 Molybdopterin oxidoreductase RC12_RS07545 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC12_RS07545 PF01568 Molydopterin dinucleotide binding domain RC12_RS07550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC12_RS07550 PF01568 Molydopterin dinucleotide binding domain RC12_RS07550 PF00384 Molybdopterin oxidoreductase RC12_RS07555 PF01568 Molydopterin dinucleotide binding domain RC12_RS07555 PF00384 Molybdopterin oxidoreductase RC12_RS07555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC12_RS07560 PF01568 Molydopterin dinucleotide binding domain RC12_RS07560 PF00384 Molybdopterin oxidoreductase RC12_RS07560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC12_RS07565 PF12800 4Fe-4S binding domain RC12_RS07565 PF13247 4Fe-4S dicluster domain RC12_RS07580 PF00175 Oxidoreductase NAD-binding domain RC12_RS07580 PF00970 Oxidoreductase FAD-binding domain RC12_RS07580 PF00042 Globin RC12_RS07585 PF00005 ABC transporter RC12_RS07590 PF07690 Major Facilitator Superfamily RC12_RS07605 PF01176 Translation initiation factor 1A / IF-1 RC12_RS07610 PF00444 Ribosomal protein L36 RC12_RS07615 PF00416 Ribosomal protein S13/S18 RC12_RS07620 PF00411 Ribosomal protein S11 RC12_RS07625 PF00163 Ribosomal protein S4/S9 N-terminal domain RC12_RS07625 PF01479 S4 domain RC12_RS07630 PF01000 RNA polymerase Rpb3/RpoA insert domain RC12_RS07630 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RC12_RS07630 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RC12_RS07635 PF01196 Ribosomal protein L17 RC12_RS07640 PF01634 ATP phosphoribosyltransferase RC12_RS07640 PF08029 HisG, C-terminal domain RC12_RS07645 PF00815 Histidinol dehydrogenase RC12_RS07650 PF08645 Polynucleotide kinase 3 phosphatase RC12_RS07650 PF00475 Imidazoleglycerol-phosphate dehydratase RC12_RS07655 PF00117 Glutamine amidotransferase class-I RC12_RS07660 PF00977 Histidine biosynthesis protein RC12_RS07670 PF00977 Histidine biosynthesis protein RC12_RS07675 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RC12_RS07675 PF01502 Phosphoribosyl-AMP cyclohydrolase RC12_RS07680 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle RC12_RS07680 PF14602 Hexapeptide repeat of succinyl-transferase RC12_RS07685 PF01883 Iron-sulfur cluster assembly protein RC12_RS07685 PF10609 NUBPL iron-transfer P-loop NTPase RC12_RS07690 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RC12_RS07690 PF02542 YgbB family RC12_RS07695 PF00486 Transcriptional regulatory protein, C terminal RC12_RS07695 PF00072 Response regulator receiver domain RC12_RS07700 PF14306 PUA-like domain RC12_RS07700 PF01747 ATP-sulfurylase RC12_RS07705 PF04608 Phosphatidylglycerophosphatase A RC12_RS07710 PF01649 Ribosomal protein S20 RC12_RS07715 PF03462 PCRF domain RC12_RS07715 PF00472 RF-1 domain RC12_RS07720 PF01243 Pyridoxamine 5'-phosphate oxidase RC12_RS07720 PF10615 Protein of unknown function (DUF2470) RC12_RS07725 PF07715 TonB-dependent Receptor Plug Domain RC12_RS07725 PF00593 TonB dependent receptor RC12_RS07730 PF01032 FecCD transport family RC12_RS07735 PF00005 ABC transporter RC12_RS07740 PF01497 Periplasmic binding protein RC12_RS07755 PF00730 HhH-GPD superfamily base excision DNA repair protein RC12_RS07755 PF14815 NUDIX domain RC12_RS07785 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RC12_RS07785 PF01872 RibD C-terminal domain RC12_RS07795 PF03315 Serine dehydratase beta chain RC12_RS07795 PF03313 Serine dehydratase alpha chain RC12_RS07815 PF01618 MotA/TolQ/ExbB proton channel family RC12_RS07820 PF02472 Biopolymer transport protein ExbD/TolR RC12_RS07845 PF01264 Chorismate synthase RC12_RS07850 PF00035 Double-stranded RNA binding motif RC12_RS07850 PF14622 Ribonuclease-III-like RC12_RS07855 PF00075 RNase H RC12_RS07865 PF08275 DNA primase catalytic core, N-terminal domain RC12_RS07865 PF01807 CHC2 zinc finger RC12_RS07880 PF08245 Mur ligase middle domain RC12_RS07880 PF02875 Mur ligase family, glutamate ligase domain RC12_RS07885 PF02575 YbaB/EbfC DNA-binding family RC12_RS07895 PF00348 Polyprenyl synthetase RC12_RS07900 PF02779 Transketolase, pyrimidine binding domain RC12_RS07900 PF00456 Transketolase, thiamine diphosphate binding domain RC12_RS07900 PF02780 Transketolase, C-terminal domain RC12_RS07905 PF02405 Permease MlaE RC12_RS07910 PF00005 ABC transporter RC12_RS07920 PF02470 MlaD protein RC12_RS07920 PF03886 ABC-type transport auxiliary lipoprotein component RC12_RS07930 PF00557 Metallopeptidase family M24 RC12_RS07935 PF01177 Asp/Glu/Hydantoin racemase RC12_RS07940 PF00877 NlpC/P60 family RC12_RS07945 PF06965 Na+/H+ antiporter 1 RC12_RS07950 PF06965 Na+/H+ antiporter 1 RC12_RS07965 PF03239 Iron permease FTR1 family RC12_RS07970 PF10634 Fe2+ transport protein RC12_RS07990 PF00005 ABC transporter RC12_RS08045 PF14743 DNA ligase OB-like domain RC12_RS08045 PF01068 ATP dependent DNA ligase domain RC12_RS08060 PF03952 Enolase, N-terminal domain RC12_RS08060 PF00113 Enolase, C-terminal TIM barrel domain RC12_RS08065 PF00154 recA bacterial DNA recombination protein RC12_RS08070 PF02621 Menaquinone biosynthesis RC12_RS08075 PF01313 Bacterial export proteins, family 3 RC12_RS08080 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RC12_RS08090 PF00459 Inositol monophosphatase family RC12_RS08095 PF00285 Citrate synthase, C-terminal domain RC12_RS08105 PF04055 Radical SAM superfamily RC12_RS08105 PF06968 Biotin and Thiamin Synthesis associated domain RC12_RS08110 PF01751 Toprim domain RC12_RS08110 PF01131 DNA topoisomerase RC12_RS08110 PF01396 Topoisomerase DNA binding C4 zinc finger RC12_RS08125 PF00528 Binding-protein-dependent transport system inner membrane component RC12_RS08140 PF13416 Bacterial extracellular solute-binding protein RC12_RS08155 PF00344 SecY translocase RC12_RS08160 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RC12_RS08165 PF00333 Ribosomal protein S5, N-terminal domain RC12_RS08165 PF03719 Ribosomal protein S5, C-terminal domain RC12_RS08170 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RC12_RS08175 PF00347 Ribosomal protein L6 RC12_RS08180 PF00410 Ribosomal protein S8 RC12_RS08185 PF00253 Ribosomal protein S14p/S29e RC12_RS08190 PF00281 Ribosomal protein L5 RC12_RS08190 PF00673 ribosomal L5P family C-terminus RC12_RS08195 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RC12_RS08195 PF00467 KOW motif RC12_RS08200 PF00238 Ribosomal protein L14p/L23e RC12_RS08205 PF00366 Ribosomal protein S17 RC12_RS08210 PF00831 Ribosomal L29 protein RC12_RS08215 PF00252 Ribosomal protein L16p/L10e RC12_RS08220 PF07650 KH domain RC12_RS08220 PF00189 Ribosomal protein S3, C-terminal domain RC12_RS08225 PF00237 Ribosomal protein L22p/L17e RC12_RS08230 PF00203 Ribosomal protein S19 RC12_RS08235 PF00181 Ribosomal Proteins L2, RNA binding domain RC12_RS08235 PF03947 Ribosomal Proteins L2, C-terminal domain RC12_RS08240 PF00276 Ribosomal protein L23 RC12_RS08245 PF00573 Ribosomal protein L4/L1 family RC12_RS08250 PF00297 Ribosomal protein L3 RC12_RS08255 PF00338 Ribosomal protein S10p/S20e RC12_RS08260 PF00849 RNA pseudouridylate synthase RC12_RS08260 PF01479 S4 domain RC12_RS08265 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RC12_RS08265 PF00753 Metallo-beta-lactamase superfamily RC12_RS08265 PF17770 Ribonuclease J C-terminal domain RC12_RS08270 PF00398 Ribosomal RNA adenine dimethylase RC12_RS08280 PF04055 Radical SAM superfamily RC12_RS08300 PF05686 Glycosyl transferase family 90 RC12_RS08335 PF00145 C-5 cytosine-specific DNA methylase RC12_RS08340 PF09556 HaeIII restriction endonuclease RC12_RS08355 PF00694 Aconitase C-terminal domain RC12_RS08360 PF00330 Aconitase family (aconitate hydratase) RC12_RS08365 PF00180 Isocitrate/isopropylmalate dehydrogenase RC12_RS08370 PF08502 LeuA allosteric (dimerisation) domain RC12_RS08370 PF00682 HMGL-like RC12_RS08390 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RC12_RS08395 PF02086 D12 class N6 adenine-specific DNA methyltransferase RC12_RS08410 PF05315 ICEA Protein RC12_RS08415 PF01555 DNA methylase RC12_RS08420 PF14489 QueF-like protein RC12_RS08430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC12_RS08430 PF00460 Flagella basal body rod protein RC12_RS08430 PF07559 Flagellar basal body protein FlaE RC12_RS08430 PF07196 Flagellin hook IN motif RC12_RS08435 PF02075 Crossover junction endodeoxyribonuclease RuvC RC12_RS08440 PF00308 Bacterial dnaA protein RC12_RS08440 PF08299 Bacterial dnaA protein helix-turn-helix RC12_RS08440 PF11638 DnaA N-terminal domain RC12_RS08445 PF02767 DNA polymerase III beta subunit, central domain RC12_RS08445 PF02768 DNA polymerase III beta subunit, C-terminal domain RC12_RS08445 PF00712 DNA polymerase III beta subunit, N-terminal domain RC12_RS08450 PF00986 DNA gyrase B subunit, carboxyl terminus RC12_RS08450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC12_RS08450 PF00204 DNA gyrase B RC12_RS08450 PF01751 Toprim domain RC12_RS08465 PF13726 Na+-H+ antiporter family RC12_RS08465 PF03553 Na+/H+ antiporter family RC12_RS08470 PF01645 Conserved region in glutamate synthase RC12_RS08470 PF04898 Glutamate synthase central domain RC12_RS08470 PF01493 GXGXG motif RC12_RS08470 PF00310 Glutamine amidotransferases class-II RC12_RS08475 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC12_RS08475 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RC12_RS08480 PF01351 Ribonuclease HII RC12_RS08490 PF02915 Rubrerythrin RC12_RS08495 PF00920 Dehydratase family RC12_RS08500 PF07274 Protein of unknown function (DUF1440) RC12_RS08510 PF06508 Queuosine biosynthesis protein QueC RC12_RS08525 PF00672 HAMP domain RC12_RS08525 PF12729 Four helix bundle sensory module for signal transduction RC12_RS08525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC12_RS08530 PF00034 Cytochrome c RC12_RS08530 PF14376 Haem-binding domain RC12_RS08530 PF03150 Di-haem cytochrome c peroxidase RC12_RS08535 PF01557 Fumarylacetoacetate (FAA) hydrolase family RC12_RS08540 PF00849 RNA pseudouridylate synthase RC12_RS08545 PF10397 Adenylosuccinate lyase C-terminus RC12_RS08545 PF00206 Lyase RC12_RS08550 PF00317 Ribonucleotide reductase, all-alpha domain RC12_RS08550 PF02867 Ribonucleotide reductase, barrel domain RC12_RS08550 PF03477 ATP cone domain RC12_RS08555 PF00375 Sodium:dicarboxylate symporter family RC12_RS08560 PF02511 Thymidylate synthase complementing protein RC12_RS08565 PF00117 Glutamine amidotransferase class-I RC12_RS08565 PF06418 CTP synthase N-terminus RC12_RS08570 PF01368 DHH family RC12_RS08570 PF02272 DHHA1 domain RC12_RS08570 PF17768 RecJ OB domain RC12_RS08575 PF00710 Asparaginase, N-terminal RC12_RS08575 PF17763 Glutaminase/Asparaginase C-terminal domain RC12_RS08605 PF07196 Flagellin hook IN motif RC12_RS08605 PF00700 Bacterial flagellin C-terminal helical region RC12_RS08605 PF00669 Bacterial flagellin N-terminal helical region RC12_RS08610 PF00669 Bacterial flagellin N-terminal helical region RC12_RS08610 PF00700 Bacterial flagellin C-terminal helical region RC12_RS08610 PF07196 Flagellin hook IN motif