RC33_RS00105	SM00382	ATPases associated with a variety of cellular activities
RC33_RS00170	SM00967	RNA 2'-O ribose methyltransferase substrate binding
RC33_RS00210	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS00260	SM00382	ATPases associated with a variety of cellular activities
RC33_RS00285	SM00116	Domain in cystathionine beta-synthase and other proteins.
RC33_RS00285	SM01091	Transporter associated domain
RC33_RS00345	SM00382	ATPases associated with a variety of cellular activities
RC33_RS00360	SM00382	ATPases associated with a variety of cellular activities
RC33_RS00390	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RC33_RS00420	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RC33_RS00485	SM00947	Carbonic anhydrase
RC33_RS00525	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RC33_RS00525	SM01204	RC33_RS00525
RC33_RS00660	SM00244	prohibitin homologues
RC33_RS00695	SM00382	ATPases associated with a variety of cellular activities
RC33_RS00695	SM00994	ClpX C4-type zinc finger
RC33_RS00695	SM01086	C-terminal, D2-small domain, of ClpB protein
RC33_RS00710	SM00851	MGS-like domain
RC33_RS00710	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
RC33_RS00730	SM00260	Two component signalling adaptor domain
RC33_RS00735	SM00073	Histidine Phosphotransfer domain
RC33_RS00735	SM00260	Two component signalling adaptor domain
RC33_RS00735	SM00387	Histidine kinase-like ATPases
RC33_RS00735	SM00448	cheY-homologous receiver domain
RC33_RS00735	SM01231	RC33_RS00735
RC33_RS00740	SM00260	Two component signalling adaptor domain
RC33_RS00740	SM00448	cheY-homologous receiver domain
RC33_RS00785	SM00382	ATPases associated with a variety of cellular activities
RC33_RS00865	SM00830	Chorismate mutase type II
RC33_RS00890	SM00861	Transketolase, pyrimidine binding domain
RC33_RS00945	SM00562	RC33_RS00945
RC33_RS00975	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
RC33_RS00975	SM00474	3'-5' exonuclease
RC33_RS00975	SM00475	5'-3' exonuclease
RC33_RS00975	SM00479	RC33_RS00975
RC33_RS00975	SM00482	DNA polymerase A domain
RC33_RS01060	SM00448	cheY-homologous receiver domain
RC33_RS01060	SM00862	Transcriptional regulatory protein, C terminal
RC33_RS01065	SM00905	Dihydroneopterin aldolase
RC33_RS01070	SM01207	RC33_RS01070
RC33_RS01095	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS01165	SM00382	ATPases associated with a variety of cellular activities
RC33_RS01180	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
RC33_RS01225	SM00028	Tetratricopeptide repeats
RC33_RS01340	SM00671	Sel1-like repeats.
RC33_RS01370	SM00867	YceI-like domain 
RC33_RS01400	SM00382	ATPases associated with a variety of cellular activities
RC33_RS01455	SM00822	RC33_RS01455
RC33_RS01490	SM00825	Beta-ketoacyl synthase
RC33_RS01510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RC33_RS01530	SM00479	RC33_RS01530
RC33_RS01560	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS01570	SM00316	Ribosomal protein S1-like RNA-binding domain
RC33_RS01590	SM00487	DEAD-like helicases superfamily
RC33_RS01590	SM00490	helicase superfamily c-terminal domain
RC33_RS01600	SM00100	Cyclic nucleotide-monophosphate binding domain
RC33_RS01615	SM00382	ATPases associated with a variety of cellular activities
RC33_RS01660	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
RC33_RS01660	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
RC33_RS01665	SM00649	Ribosomal protein L11/L12
RC33_RS01690	SM00663	RNA polymerase I subunit A N-terminus
RC33_RS01705	SM00838	Elongation factor G C-terminus
RC33_RS01705	SM00889	Elongation factor G, domain IV
RC33_RS01745	SM00450	Rhodanese Homology Domain
RC33_RS01765	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RC33_RS01780	SM00382	ATPases associated with a variety of cellular activities
RC33_RS01780	SM01086	C-terminal, D2-small domain, of ClpB protein
RC33_RS01790	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RC33_RS01790	SM00245	tail specific protease
RC33_RS01805	SM01211	RC33_RS01805
RC33_RS01815	SM00563	Phosphate acyltransferases
RC33_RS01825	SM00387	Histidine kinase-like ATPases
RC33_RS01830	SM00450	Rhodanese Homology Domain
RC33_RS01890	SM00881	CoA binding domain
RC33_RS01980	SM00841	Elongation factor P, C-terminal
RC33_RS01980	SM01185	RC33_RS01980
RC33_RS02035	SM00382	ATPases associated with a variety of cellular activities
RC33_RS02095	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS02125	SM00292	breast cancer carboxy-terminal domain
RC33_RS02125	SM00532	Ligase N family
RC33_RS02140	SM00904	Riboflavin kinase
RC33_RS02165	SM00477	DNA/RNA non-specific endonuclease
RC33_RS02165	SM00892	DNA/RNA non-specific endonuclease
RC33_RS02170	SM00478	endonuclease III
RC33_RS02170	SM00525	RC33_RS02170
RC33_RS02230	SM00382	ATPases associated with a variety of cellular activities
RC33_RS02275	SM00382	ATPases associated with a variety of cellular activities
RC33_RS02330	SM00955	RC33_RS02330
RC33_RS02350	SM00732	Likely ribonuclease with RNase H fold.
RC33_RS02390	SM00267	diguanylate cyclase
RC33_RS02390	SM00448	cheY-homologous receiver domain
RC33_RS02400	SM00257	Lysin motif
RC33_RS02640	SM00382	ATPases associated with a variety of cellular activities
RC33_RS02640	SM01086	C-terminal, D2-small domain, of ClpB protein
RC33_RS02660	SM00363	S4 RNA-binding domain
RC33_RS02670	SM00382	ATPases associated with a variety of cellular activities
RC33_RS02705	SM00487	DEAD-like helicases superfamily
RC33_RS02705	SM00490	helicase superfamily c-terminal domain
RC33_RS02725	SM00487	DEAD-like helicases superfamily
RC33_RS02725	SM00490	helicase superfamily c-terminal domain
RC33_RS02790	SM00842	Cell division protein FtsA
RC33_RS02795	SM00864	Tubulin/FtsZ family, GTPase domain
RC33_RS02795	SM00865	Tubulin/FtsZ family, C-terminal domain
RC33_RS02810	SM01230	RC33_RS02810
RC33_RS02825	SM01001	AIR carboxylase
RC33_RS02860	SM00382	ATPases associated with a variety of cellular activities
RC33_RS02860	SM00962	SRP54-type protein, GTPase domain
RC33_RS02860	SM00963	SRP54-type protein, helical bundle domain
RC33_RS02890	SM00095	Transthyretin
RC33_RS02905	SM00481	DNA polymerase alpha chain like domain
RC33_RS02940	SM00852	Probable molybdopterin binding domain
RC33_RS02985	SM00062	Bacterial periplasmic substrate-binding proteins
RC33_RS03160	SM00382	ATPases associated with a variety of cellular activities
RC33_RS03160	SM00930	RC33_RS03160
RC33_RS03190	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RC33_RS03255	SM00387	Histidine kinase-like ATPases
RC33_RS03255	SM00388	His Kinase A (phosphoacceptor) domain
RC33_RS03285	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RC33_RS03305	SM00382	ATPases associated with a variety of cellular activities
RC33_RS03320	SM01130	RC33_RS03320
RC33_RS03335	SM00849	Metallo-beta-lactamase superfamily
RC33_RS03485	SM00382	ATPases associated with a variety of cellular activities
RC33_RS03485	SM00962	SRP54-type protein, GTPase domain
RC33_RS03580	SM00419	helix_turn_helix, cAMP Regulatory protein
RC33_RS03595	SM00986	Uracil DNA glycosylase superfamily
RC33_RS03595	SM00987	UreE urease accessory protein, C-terminal domain 
RC33_RS03670	SM00470	ParB-like nuclease domain
RC33_RS03700	SM00382	ATPases associated with a variety of cellular activities
RC33_RS03745	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
RC33_RS03790	SM00062	Bacterial periplasmic substrate-binding proteins
RC33_RS03790	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
RC33_RS03840	SM00881	CoA binding domain
RC33_RS03865	SM00248	ankyrin repeats
RC33_RS03980	SM00852	Probable molybdopterin binding domain
RC33_RS04075	SM01387	RC33_RS04075
RC33_RS04080	SM00843	RC33_RS04080
RC33_RS04100	SM00382	ATPases associated with a variety of cellular activities
RC33_RS04105	SM00387	Histidine kinase-like ATPases
RC33_RS04105	SM00388	His Kinase A (phosphoacceptor) domain
RC33_RS04110	SM00448	cheY-homologous receiver domain
RC33_RS04110	SM00862	Transcriptional regulatory protein, C terminal
RC33_RS04125	SM00316	Ribosomal protein S1-like RNA-binding domain
RC33_RS04140	SM00873	B3/4 domain
RC33_RS04140	SM00874	tRNA synthetase B5 domain
RC33_RS04140	SM00896	Ferredoxin-fold anticodon binding domain
RC33_RS04170	SM00382	ATPases associated with a variety of cellular activities
RC33_RS04185	SM01005	Alanine racemase, C-terminal domain
RC33_RS04225	SM00411	bacterial (prokaryotic) histone like domain
RC33_RS04250	SM01400	RC33_RS04250
RC33_RS04265	SM00062	Bacterial periplasmic substrate-binding proteins
RC33_RS04270	SM00382	ATPases associated with a variety of cellular activities
RC33_RS04275	SM00138	Methyltransferase, chemotaxis proteins 
RC33_RS04385	SM00563	Phosphate acyltransferases
RC33_RS04440	SM00957	SecA DEAD-like domain
RC33_RS04440	SM00958	SecA preprotein cross-linking domain
RC33_RS04455	SM00382	ATPases associated with a variety of cellular activities
RC33_RS04485	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RC33_RS04485	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RC33_RS04490	SM00798	AICARFT/IMPCHase bienzyme
RC33_RS04490	SM00851	MGS-like domain
RC33_RS04495	SM00271	DnaJ molecular chaperone homology domain
RC33_RS04510	SM01245	RC33_RS04510
RC33_RS04520	SM01234	RC33_RS04520
RC33_RS04560	SM00912	haemagglutination activity domain
RC33_RS04600	SM00318	Staphylococcal nuclease homologues
RC33_RS04615	SM00062	Bacterial periplasmic substrate-binding proteins
RC33_RS04670	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS04685	SM01004	Delta-aminolevulinic acid dehydratase
RC33_RS04735	SM00382	ATPases associated with a variety of cellular activities
RC33_RS04740	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS04785	SM00382	ATPases associated with a variety of cellular activities
RC33_RS04790	SM00382	ATPases associated with a variety of cellular activities
RC33_RS04830	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RC33_RS04835	SM00382	ATPases associated with a variety of cellular activities
RC33_RS04835	SM00448	cheY-homologous receiver domain
RC33_RS04850	SM00434	DNA Topoisomerase IV
RC33_RS04865	SM00838	Elongation factor G C-terminus
RC33_RS04885	SM00271	DnaJ molecular chaperone homology domain
RC33_RS04900	SM00878	Biotin carboxylase C-terminal domain
RC33_RS04925	SM00342	helix_turn_helix, arabinose operon control protein
RC33_RS04935	SM00876	Biotin and Thiamin Synthesis associated domain
RC33_RS04975	SM00463	Small MutS-related domain
RC33_RS04975	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
RC33_RS04975	SM00534	ATPase domain of DNA mismatch repair MUTS family
RC33_RS05000	SM00116	Domain in cystathionine beta-synthase and other proteins.
RC33_RS05000	SM01240	RC33_RS05000
RC33_RS05045	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RC33_RS05070	SM00382	ATPases associated with a variety of cellular activities
RC33_RS05070	SM00464	Found in ATP-dependent protease La (LON)
RC33_RS05120	SM00478	endonuclease III
RC33_RS05130	SM00487	DEAD-like helicases superfamily
RC33_RS05130	SM00490	helicase superfamily c-terminal domain
RC33_RS05130	SM00982	RC33_RS05130
RC33_RS05130	SM01058	CarD-like/TRCF domain
RC33_RS05175	SM01323	RC33_RS05175
RC33_RS05245	SM00382	ATPases associated with a variety of cellular activities
RC33_RS05245	SM01086	C-terminal, D2-small domain, of ClpB protein
RC33_RS05255	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RC33_RS05255	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RC33_RS05285	SM00382	ATPases associated with a variety of cellular activities
RC33_RS05295	SM00448	cheY-homologous receiver domain
RC33_RS05350	SM00382	ATPases associated with a variety of cellular activities
RC33_RS05500	SM00357	Cold shock protein domain
RC33_RS05500	SM00382	ATPases associated with a variety of cellular activities
RC33_RS05500	SM00959	Rho termination factor, N-terminal domain
RC33_RS05505	SM00382	ATPases associated with a variety of cellular activities
RC33_RS05580	SM00836	DALR anticodon binding domain
RC33_RS05580	SM01016	Arginyl tRNA synthetase N terminal dom
RC33_RS05590	SM00072	Guanylate kinase homologues.
RC33_RS05605	SM00382	ATPases associated with a variety of cellular activities
RC33_RS05645	SM01228	RC33_RS05645
RC33_RS05655	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RC33_RS05690	SM00845	GatB domain
RC33_RS05730	SM00382	ATPases associated with a variety of cellular activities
RC33_RS05735	SM00382	ATPases associated with a variety of cellular activities
RC33_RS05735	SM00962	SRP54-type protein, GTPase domain
RC33_RS05750	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RC33_RS05805	SM00883	Chaperonin 10 Kd subunit
RC33_RS05815	SM00387	Histidine kinase-like ATPases
RC33_RS05815	SM00388	His Kinase A (phosphoacceptor) domain
RC33_RS05820	SM00448	cheY-homologous receiver domain
RC33_RS05820	SM00862	Transcriptional regulatory protein, C terminal
RC33_RS05840	SM00387	Histidine kinase-like ATPases
RC33_RS05840	SM00388	His Kinase A (phosphoacceptor) domain
RC33_RS05845	SM00448	cheY-homologous receiver domain
RC33_RS05845	SM00862	Transcriptional regulatory protein, C terminal
RC33_RS05850	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RC33_RS05855	SM00271	DnaJ molecular chaperone homology domain
RC33_RS05860	SM00422	helix_turn_helix, mercury resistance
RC33_RS05940	SM00465	GIY-YIG type nucleases (URI domain)
RC33_RS05960	SM01209	RC33_RS05960
RC33_RS05960	SM01210	RC33_RS05960
RC33_RS05975	SM00316	Ribosomal protein S1-like RNA-binding domain
RC33_RS05975	SM00322	K homology RNA-binding domain
RC33_RS05980	SM00986	Uracil DNA glycosylase superfamily
RC33_RS05980	SM00987	UreE urease accessory protein, C-terminal domain 
RC33_RS06000	SM00226	Low molecular weight phosphatase family
RC33_RS06010	SM00271	DnaJ molecular chaperone homology domain
RC33_RS06015	SM00448	cheY-homologous receiver domain
RC33_RS06015	SM00862	Transcriptional regulatory protein, C terminal
RC33_RS06020	SM00387	Histidine kinase-like ATPases
RC33_RS06020	SM00388	His Kinase A (phosphoacceptor) domain
RC33_RS06055	SM00646	RC33_RS06055
RC33_RS06065	SM00363	S4 RNA-binding domain
RC33_RS06070	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RC33_RS06070	SM00954	Region found in RelA / SpoT proteins
RC33_RS06075	SM01409	RC33_RS06075
RC33_RS06095	SM00382	ATPases associated with a variety of cellular activities
RC33_RS06105	SM00060	Fibronectin type 3 domain
RC33_RS06110	SM00363	S4 RNA-binding domain
RC33_RS06150	SM00919	Malic enzyme, NAD binding domain
RC33_RS06150	SM01274	RC33_RS06150
RC33_RS06165	SM00878	Biotin carboxylase C-terminal domain
RC33_RS06255	SM00858	RC33_RS06255
RC33_RS06345	SM00382	ATPases associated with a variety of cellular activities
RC33_RS06400	SM00382	ATPases associated with a variety of cellular activities
RC33_RS06425	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS06505	SM01060	RC33_RS06505
RC33_RS06510	SM00248	ankyrin repeats
RC33_RS06535	SM00998	Adenylosuccinate lyase C-terminus
RC33_RS06545	SM00899	RC33_RS06545
RC33_RS06575	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
RC33_RS06810	SM00116	Domain in cystathionine beta-synthase and other proteins.
RC33_RS06825	SM00382	ATPases associated with a variety of cellular activities
RC33_RS06860	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS06865	SM00937	RC33_RS06865
RC33_RS06940	SM00382	ATPases associated with a variety of cellular activities
RC33_RS06965	SM00890	Domain of unknown function
RC33_RS07040	SM00448	cheY-homologous receiver domain
RC33_RS07040	SM00862	Transcriptional regulatory protein, C terminal
RC33_RS07045	SM00387	Histidine kinase-like ATPases
RC33_RS07055	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
RC33_RS07075	SM00788	Adenylosuccinate synthetase
RC33_RS07115	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RC33_RS07145	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RC33_RS07180	SM00852	Probable molybdopterin binding domain
RC33_RS07220	SM00047	Lysozyme subfamily 2
RC33_RS07250	SM00382	ATPases associated with a variety of cellular activities
RC33_RS07270	SM00796	Allophanate hydrolase subunit 1
RC33_RS07275	SM00797	Allophanate hydrolase subunit 2
RC33_RS07300	SM00829	Enoylreductase
RC33_RS07360	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RC33_RS07365	SM00422	helix_turn_helix, mercury resistance
RC33_RS07375	SM00028	Tetratricopeptide repeats
RC33_RS07415	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
RC33_RS07450	SM00382	ATPases associated with a variety of cellular activities
RC33_RS07455	SM00382	ATPases associated with a variety of cellular activities
RC33_RS07515	SM00382	ATPases associated with a variety of cellular activities
RC33_RS07535	SM00316	Ribosomal protein S1-like RNA-binding domain
RC33_RS07555	SM00363	S4 RNA-binding domain
RC33_RS07555	SM01390	RC33_RS07555
RC33_RS07560	SM00662	RNA polymerases D
RC33_RS07645	SM00937	RC33_RS07645
RC33_RS07665	SM00382	ATPases associated with a variety of cellular activities
RC33_RS07685	SM00478	endonuclease III
RC33_RS07685	SM00525	RC33_RS07685
RC33_RS07780	SM00358	Double-stranded RNA binding motif
RC33_RS07780	SM00535	Ribonuclease III family
RC33_RS07795	SM00400	zinc finger
RC33_RS07795	SM00493	RC33_RS07795
RC33_RS07820	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RC33_RS07830	SM00861	Transketolase, pyrimidine binding domain
RC33_RS07840	SM00382	ATPases associated with a variety of cellular activities
RC33_RS07920	SM00382	ATPases associated with a variety of cellular activities
RC33_RS07965	SM00530	Helix-turn-helix XRE-family like proteins 
RC33_RS08015	SM00477	DNA/RNA non-specific endonuclease
RC33_RS08015	SM00892	DNA/RNA non-specific endonuclease
RC33_RS08040	SM00487	DEAD-like helicases superfamily
RC33_RS08040	SM00490	helicase superfamily c-terminal domain
RC33_RS08105	SM01192	RC33_RS08105
RC33_RS08105	SM01193	RC33_RS08105
RC33_RS08110	SM00382	ATPases associated with a variety of cellular activities
RC33_RS08150	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS08150	SM00876	Biotin and Thiamin Synthesis associated domain
RC33_RS08155	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
RC33_RS08155	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
RC33_RS08155	SM00493	RC33_RS08155
RC33_RS08240	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
RC33_RS08245	SM01374	RC33_RS08245
RC33_RS08265	SM00322	K homology RNA-binding domain
RC33_RS08280	SM01382	RC33_RS08280
RC33_RS08280	SM01383	RC33_RS08280
RC33_RS08300	SM01403	RC33_RS08300
RC33_RS08305	SM00363	S4 RNA-binding domain
RC33_RS08310	SM00849	Metallo-beta-lactamase superfamily
RC33_RS08315	SM00650	Ribosomal RNA adenine dimethylases
RC33_RS08325	SM00729	Elongator protein 3, MiaB family, Radical SAM
RC33_RS08375	SM01329	RC33_RS08375
RC33_RS08380	SM00917	LeuA allosteric (dimerisation) domain
RC33_RS08450	SM00382	ATPases associated with a variety of cellular activities
RC33_RS08450	SM00760	Bacterial dnaA protein helix-turn-helix domain
RC33_RS08455	SM00480	DNA polymerase III beta subunit
RC33_RS08460	SM00387	Histidine kinase-like ATPases
RC33_RS08460	SM00433	TopoisomeraseII
RC33_RS08495	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RC33_RS08535	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RC33_RS08555	SM00998	Adenylosuccinate lyase C-terminus
RC33_RS08585	SM00870	RC33_RS08585
RC33_RS08600	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
