RC39_RS00135	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RC39_RS00135	PWY-6148	tetrahydromethanopterin biosynthesis
RC39_RS00135	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RC39_RS00135	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RC39_RS00140	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RC39_RS00140	PWY-6416	quinate degradation II
RC39_RS00140	PWY-6707	gallate biosynthesis
RC39_RS00235	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RC39_RS00235	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RC39_RS00245	PWY-5392	reductive TCA cycle II
RC39_RS00245	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RC39_RS00245	PWY-5690	TCA cycle II (plants and fungi)
RC39_RS00245	PWY-5913	TCA cycle VI (obligate autotrophs)
RC39_RS00245	PWY-6728	methylaspartate cycle
RC39_RS00245	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RC39_RS00245	PWY-7254	TCA cycle VII (acetate-producers)
RC39_RS00245	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RC39_RS00295	PWY-3341	L-proline biosynthesis III
RC39_RS00295	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RC39_RS00335	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS00345	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS00390	PWY-4381	fatty acid biosynthesis initiation I
RC39_RS00390	PWY-6799	fatty acid biosynthesis (plant mitochondria)
RC39_RS00390	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RC39_RS00395	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
RC39_RS00395	PWY-6153	autoinducer AI-2 biosynthesis I
RC39_RS00395	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
RC39_RS00435	PWY-6825	phosphatidylcholine biosynthesis V
RC39_RS00440	PWY-4381	fatty acid biosynthesis initiation I
RC39_RS00440	PWY-5743	3-hydroxypropanoate cycle
RC39_RS00440	PWY-5744	glyoxylate assimilation
RC39_RS00440	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RC39_RS00440	PWY-6679	jadomycin biosynthesis
RC39_RS00440	PWY-6722	candicidin biosynthesis
RC39_RS00440	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RC39_RS00455	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
RC39_RS00465	PWY-2201	folate transformations I
RC39_RS00465	PWY-5497	purine nucleobases degradation II (anaerobic)
RC39_RS00475	PWY-702	L-methionine biosynthesis II
RC39_RS00585	PWY-2201	folate transformations I
RC39_RS00595	PWY-2201	folate transformations I
RC39_RS00615	PWY-6703	preQ<sub>0</sub> biosynthesis
RC39_RS00620	PWY-6823	molybdenum cofactor biosynthesis
RC39_RS00640	PWY-2781	<i>cis</i>-zeatin biosynthesis
RC39_RS00660	PWY-6854	ethylene biosynthesis III (microbes)
RC39_RS00715	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RC39_RS00715	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RC39_RS00720	PWY-6938	NADH repair
RC39_RS00750	PWY-5663	tetrahydrobiopterin biosynthesis I
RC39_RS00750	PWY-5664	tetrahydrobiopterin biosynthesis II
RC39_RS00750	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RC39_RS00750	PWY-6703	preQ<sub>0</sub> biosynthesis
RC39_RS00750	PWY-6983	tetrahydrobiopterin biosynthesis III
RC39_RS00750	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RC39_RS00755	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS00760	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RC39_RS00760	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RC39_RS00760	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RC39_RS00760	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RC39_RS00765	PWY-2941	L-lysine biosynthesis II
RC39_RS00765	PWY-2942	L-lysine biosynthesis III
RC39_RS00765	PWY-5097	L-lysine biosynthesis VI
RC39_RS00795	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
RC39_RS00830	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RC39_RS00830	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RC39_RS00840	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RC39_RS00840	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RC39_RS00860	PWY-5381	pyridine nucleotide cycling (plants)
RC39_RS00865	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RC39_RS00865	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RC39_RS00865	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RC39_RS00865	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RC39_RS00865	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RC39_RS00865	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RC39_RS00865	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RC39_RS00865	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RC39_RS00875	PWY-5686	UMP biosynthesis
RC39_RS00895	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RC39_RS00895	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RC39_RS00895	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RC39_RS00895	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RC39_RS00910	PWY-6823	molybdenum cofactor biosynthesis
RC39_RS00910	PWY-6891	thiazole biosynthesis II (Bacillus)
RC39_RS00910	PWY-6892	thiazole biosynthesis I (E. coli)
RC39_RS00910	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RC39_RS00990	PWY-7039	phosphatidate metabolism, as a signaling molecule
RC39_RS01000	PWY-5686	UMP biosynthesis
RC39_RS01115	PWY-5057	L-valine degradation II
RC39_RS01115	PWY-5076	L-leucine degradation III
RC39_RS01115	PWY-5078	L-isoleucine degradation II
RC39_RS01115	PWY-5101	L-isoleucine biosynthesis II
RC39_RS01115	PWY-5103	L-isoleucine biosynthesis III
RC39_RS01115	PWY-5104	L-isoleucine biosynthesis IV
RC39_RS01115	PWY-5108	L-isoleucine biosynthesis V
RC39_RS01135	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RC39_RS01135	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RC39_RS01135	PWY-5989	stearate biosynthesis II (bacteria and plants)
RC39_RS01135	PWY-5994	palmitate biosynthesis I (animals and fungi)
RC39_RS01135	PWY-6113	superpathway of mycolate biosynthesis
RC39_RS01135	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RC39_RS01135	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RC39_RS01135	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RC39_RS01135	PWY-7663	gondoate biosynthesis (anaerobic)
RC39_RS01135	PWY-7664	oleate biosynthesis IV (anaerobic)
RC39_RS01135	PWYG-321	mycolate biosynthesis
RC39_RS01160	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RC39_RS01160	PWY-5686	UMP biosynthesis
RC39_RS01160	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RC39_RS01170	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RC39_RS01170	PWY-5723	Rubisco shunt
RC39_RS01205	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
RC39_RS01205	PWY-622	starch biosynthesis
RC39_RS01220	PWY-5381	pyridine nucleotide cycling (plants)
RC39_RS01220	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RC39_RS01220	PWY-6596	adenosine nucleotides degradation I
RC39_RS01220	PWY-6606	guanosine nucleotides degradation II
RC39_RS01220	PWY-6607	guanosine nucleotides degradation I
RC39_RS01220	PWY-6608	guanosine nucleotides degradation III
RC39_RS01220	PWY-7185	UTP and CTP dephosphorylation I
RC39_RS01255	PWY-2201	folate transformations I
RC39_RS01255	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RC39_RS01275	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
RC39_RS01295	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
RC39_RS01305	PWY-2941	L-lysine biosynthesis II
RC39_RS01305	PWY-2942	L-lysine biosynthesis III
RC39_RS01305	PWY-5097	L-lysine biosynthesis VI
RC39_RS01315	PWY-3461	L-tyrosine biosynthesis II
RC39_RS01315	PWY-3462	L-phenylalanine biosynthesis II
RC39_RS01315	PWY-6120	L-tyrosine biosynthesis III
RC39_RS01315	PWY-6627	salinosporamide A biosynthesis
RC39_RS01315	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
RC39_RS01315	PWY-7626	bacilysin biosynthesis
RC39_RS01340	PWY-6891	thiazole biosynthesis II (Bacillus)
RC39_RS01340	PWY-6892	thiazole biosynthesis I (E. coli)
RC39_RS01340	PWY-7560	methylerythritol phosphate pathway II
RC39_RS01355	PWY-5839	menaquinol-7 biosynthesis
RC39_RS01355	PWY-5844	menaquinol-9 biosynthesis
RC39_RS01355	PWY-5849	menaquinol-6 biosynthesis
RC39_RS01355	PWY-5890	menaquinol-10 biosynthesis
RC39_RS01355	PWY-5891	menaquinol-11 biosynthesis
RC39_RS01355	PWY-5892	menaquinol-12 biosynthesis
RC39_RS01355	PWY-5895	menaquinol-13 biosynthesis
RC39_RS01375	PWY-4381	fatty acid biosynthesis initiation I
RC39_RS01395	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RC39_RS01395	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RC39_RS01395	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RC39_RS01395	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RC39_RS01395	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RC39_RS01395	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RC39_RS01395	PWY-7205	CMP phosphorylation
RC39_RS01395	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RC39_RS01395	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RC39_RS01395	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS01395	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RC39_RS01395	PWY-7224	purine deoxyribonucleosides salvage
RC39_RS01395	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RC39_RS01395	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RC39_RS01460	PWY-5958	acridone alkaloid biosynthesis
RC39_RS01460	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RC39_RS01460	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RC39_RS01465	PWY-5958	acridone alkaloid biosynthesis
RC39_RS01465	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RC39_RS01465	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RC39_RS01515	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RC39_RS01515	PWY-6148	tetrahydromethanopterin biosynthesis
RC39_RS01515	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RC39_RS01515	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RC39_RS01530	PWY-6749	CMP-legionaminate biosynthesis I
RC39_RS01630	PWY-5686	UMP biosynthesis
RC39_RS01640	PWY-6167	flavin biosynthesis II (archaea)
RC39_RS01640	PWY-6168	flavin biosynthesis III (fungi)
RC39_RS01645	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RC39_RS01645	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
RC39_RS01660	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RC39_RS01670	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
RC39_RS01685	PWY-1042	glycolysis IV (plant cytosol)
RC39_RS01685	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RC39_RS01685	PWY-5484	glycolysis II (from fructose 6-phosphate)
RC39_RS01685	PWY-5723	Rubisco shunt
RC39_RS01685	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RC39_RS01685	PWY-6886	1-butanol autotrophic biosynthesis
RC39_RS01685	PWY-6901	superpathway of glucose and xylose degradation
RC39_RS01685	PWY-7003	glycerol degradation to butanol
RC39_RS01685	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RC39_RS01685	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RC39_RS01690	PWY-7254	TCA cycle VII (acetate-producers)
RC39_RS01695	PWY-3961	phosphopantothenate biosynthesis II
RC39_RS01735	PWY-1622	formaldehyde assimilation I (serine pathway)
RC39_RS01735	PWY-181	photorespiration
RC39_RS01735	PWY-2161	folate polyglutamylation
RC39_RS01735	PWY-2201	folate transformations I
RC39_RS01735	PWY-3661	glycine betaine degradation I
RC39_RS01735	PWY-3661-1	glycine betaine degradation II (mammalian)
RC39_RS01735	PWY-3841	folate transformations II
RC39_RS01735	PWY-5497	purine nucleobases degradation II (anaerobic)
RC39_RS01750	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RC39_RS01770	PWY-3781	aerobic respiration I (cytochrome c)
RC39_RS01770	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RC39_RS01770	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RC39_RS01770	PWY-5690	TCA cycle II (plants and fungi)
RC39_RS01770	PWY-6728	methylaspartate cycle
RC39_RS01770	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RC39_RS01770	PWY-7254	TCA cycle VII (acetate-producers)
RC39_RS01770	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RC39_RS01775	PWY-3781	aerobic respiration I (cytochrome c)
RC39_RS01775	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RC39_RS01775	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RC39_RS01775	PWY-5690	TCA cycle II (plants and fungi)
RC39_RS01775	PWY-6728	methylaspartate cycle
RC39_RS01775	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RC39_RS01775	PWY-7254	TCA cycle VII (acetate-producers)
RC39_RS01775	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RC39_RS01795	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
RC39_RS01885	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RC39_RS01885	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RC39_RS01890	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RC39_RS01890	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RC39_RS01890	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RC39_RS01895	PWY-1042	glycolysis IV (plant cytosol)
RC39_RS01895	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RC39_RS01895	PWY-5484	glycolysis II (from fructose 6-phosphate)
RC39_RS01895	PWY-5723	Rubisco shunt
RC39_RS01895	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RC39_RS01895	PWY-6886	1-butanol autotrophic biosynthesis
RC39_RS01895	PWY-6901	superpathway of glucose and xylose degradation
RC39_RS01895	PWY-7003	glycerol degradation to butanol
RC39_RS01895	PWY-7124	ethylene biosynthesis V (engineered)
RC39_RS01895	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RC39_RS01905	PWY-5367	petroselinate biosynthesis
RC39_RS01905	PWY-5515	L-arabinose degradation II
RC39_RS01905	PWY-5525	D-glucuronate degradation I
RC39_RS01905	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RC39_RS01905	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RC39_RS01905	PWY-5989	stearate biosynthesis II (bacteria and plants)
RC39_RS01905	PWY-5994	palmitate biosynthesis I (animals and fungi)
RC39_RS01905	PWY-6113	superpathway of mycolate biosynthesis
RC39_RS01905	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RC39_RS01905	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RC39_RS01905	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RC39_RS01905	PWY-7663	gondoate biosynthesis (anaerobic)
RC39_RS01905	PWY-7664	oleate biosynthesis IV (anaerobic)
RC39_RS01905	PWYG-321	mycolate biosynthesis
RC39_RS01910	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RC39_RS01910	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RC39_RS01915	PWY-3781	aerobic respiration I (cytochrome c)
RC39_RS01915	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RC39_RS01915	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RC39_RS01915	PWY-5690	TCA cycle II (plants and fungi)
RC39_RS01915	PWY-6728	methylaspartate cycle
RC39_RS01915	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RC39_RS01915	PWY-7254	TCA cycle VII (acetate-producers)
RC39_RS01915	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RC39_RS01920	PWY-3781	aerobic respiration I (cytochrome c)
RC39_RS01920	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RC39_RS01920	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RC39_RS01920	PWY-5690	TCA cycle II (plants and fungi)
RC39_RS01920	PWY-6728	methylaspartate cycle
RC39_RS01920	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RC39_RS01920	PWY-7254	TCA cycle VII (acetate-producers)
RC39_RS01920	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RC39_RS01930	PWY-6899	base-degraded thiamin salvage
RC39_RS01930	PWY-7356	thiamin salvage IV (yeast)
RC39_RS01945	PWY-4381	fatty acid biosynthesis initiation I
RC39_RS01945	PWY-5743	3-hydroxypropanoate cycle
RC39_RS01945	PWY-5744	glyoxylate assimilation
RC39_RS01945	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RC39_RS01945	PWY-6679	jadomycin biosynthesis
RC39_RS01945	PWY-6722	candicidin biosynthesis
RC39_RS01945	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RC39_RS01975	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RC39_RS01975	PWY-5723	Rubisco shunt
RC39_RS01985	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
RC39_RS02030	PWY-5198	factor 420 biosynthesis
RC39_RS02030	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
RC39_RS02030	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
RC39_RS02245	PWY-6123	inosine-5'-phosphate biosynthesis I
RC39_RS02245	PWY-6124	inosine-5'-phosphate biosynthesis II
RC39_RS02245	PWY-7234	inosine-5'-phosphate biosynthesis III
RC39_RS02250	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RC39_RS02250	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RC39_RS02250	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RC39_RS02255	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RC39_RS02255	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RC39_RS02255	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RC39_RS02265	PWY-5667	CDP-diacylglycerol biosynthesis I
RC39_RS02265	PWY-5981	CDP-diacylglycerol biosynthesis III
RC39_RS02265	PWY-6453	stigma estolide biosynthesis
RC39_RS02265	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
RC39_RS02265	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
RC39_RS02265	PWY-7587	oleate biosynthesis III (cyanobacteria)
RC39_RS02265	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
RC39_RS02325	PWY-5913	TCA cycle VI (obligate autotrophs)
RC39_RS02325	PWY-6549	L-glutamine biosynthesis III
RC39_RS02325	PWY-6728	methylaspartate cycle
RC39_RS02325	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RC39_RS02325	PWY-7124	ethylene biosynthesis V (engineered)
RC39_RS02325	PWY-7254	TCA cycle VII (acetate-producers)
RC39_RS02325	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RC39_RS02335	PWY-5392	reductive TCA cycle II
RC39_RS02335	PWY-5537	pyruvate fermentation to acetate V
RC39_RS02335	PWY-5538	pyruvate fermentation to acetate VI
RC39_RS02335	PWY-5690	TCA cycle II (plants and fungi)
RC39_RS02335	PWY-5913	TCA cycle VI (obligate autotrophs)
RC39_RS02335	PWY-6728	methylaspartate cycle
RC39_RS02335	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RC39_RS02335	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RC39_RS02340	PWY-5392	reductive TCA cycle II
RC39_RS02340	PWY-5537	pyruvate fermentation to acetate V
RC39_RS02340	PWY-5538	pyruvate fermentation to acetate VI
RC39_RS02340	PWY-5690	TCA cycle II (plants and fungi)
RC39_RS02340	PWY-5913	TCA cycle VI (obligate autotrophs)
RC39_RS02340	PWY-6728	methylaspartate cycle
RC39_RS02340	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RC39_RS02340	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RC39_RS02380	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RC39_RS02395	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RC39_RS02395	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RC39_RS02400	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
RC39_RS02400	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
RC39_RS02400	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
RC39_RS02400	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
RC39_RS02400	PWY-6978	plastoquinol-9 biosynthesis II
RC39_RS02465	PWY-3341	L-proline biosynthesis III
RC39_RS02465	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RC39_RS02505	PWY-6167	flavin biosynthesis II (archaea)
RC39_RS02505	PWY-6168	flavin biosynthesis III (fungi)
RC39_RS02505	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RC39_RS02515	PWY-5101	L-isoleucine biosynthesis II
RC39_RS02515	PWY-5103	L-isoleucine biosynthesis III
RC39_RS02515	PWY-5104	L-isoleucine biosynthesis IV
RC39_RS02515	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RC39_RS02515	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RC39_RS02515	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RC39_RS02515	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RC39_RS02520	PWY-5101	L-isoleucine biosynthesis II
RC39_RS02520	PWY-5103	L-isoleucine biosynthesis III
RC39_RS02520	PWY-5104	L-isoleucine biosynthesis IV
RC39_RS02520	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RC39_RS02520	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RC39_RS02520	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RC39_RS02520	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RC39_RS02530	PWY-6700	queuosine biosynthesis
RC39_RS02555	PWY-2941	L-lysine biosynthesis II
RC39_RS02555	PWY-2942	L-lysine biosynthesis III
RC39_RS02555	PWY-5097	L-lysine biosynthesis VI
RC39_RS02555	PWY-6559	spermidine biosynthesis II
RC39_RS02555	PWY-6562	norspermidine biosynthesis
RC39_RS02555	PWY-7153	grixazone biosynthesis
RC39_RS02570	PWY-6614	tetrahydrofolate biosynthesis
RC39_RS02590	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
RC39_RS02590	PWY-6167	flavin biosynthesis II (archaea)
RC39_RS02590	PWY-6168	flavin biosynthesis III (fungi)
RC39_RS02630	PWY-1042	glycolysis IV (plant cytosol)
RC39_RS02630	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RC39_RS02630	PWY-5484	glycolysis II (from fructose 6-phosphate)
RC39_RS02630	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RC39_RS02630	PWY-7385	1,3-propanediol biosynthesis (engineered)
RC39_RS02785	PWY-5103	L-isoleucine biosynthesis III
RC39_RS02785	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RC39_RS02805	PWY-6825	phosphatidylcholine biosynthesis V
RC39_RS02820	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS02830	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
RC39_RS02830	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RC39_RS02830	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
RC39_RS02860	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RC39_RS02860	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
RC39_RS02900	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RC39_RS03075	PWY-4983	L-citrulline-nitric oxide cycle
RC39_RS03075	PWY-4984	urea cycle
RC39_RS03075	PWY-5	canavanine biosynthesis
RC39_RS03075	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RC39_RS03075	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RC39_RS03180	PWY-1281	sulfoacetaldehyde degradation I
RC39_RS03180	PWY-5482	pyruvate fermentation to acetate II
RC39_RS03180	PWY-5485	pyruvate fermentation to acetate IV
RC39_RS03180	PWY-5497	purine nucleobases degradation II (anaerobic)
RC39_RS03180	PWY-6637	sulfolactate degradation II
RC39_RS03185	PWY-5482	pyruvate fermentation to acetate II
RC39_RS03185	PWY-5485	pyruvate fermentation to acetate IV
RC39_RS03185	PWY-5497	purine nucleobases degradation II (anaerobic)
RC39_RS03200	PWY-2201	folate transformations I
RC39_RS03230	PWY-381	nitrate reduction II (assimilatory)
RC39_RS03230	PWY-5675	nitrate reduction V (assimilatory)
RC39_RS03230	PWY-6549	L-glutamine biosynthesis III
RC39_RS03230	PWY-6963	ammonia assimilation cycle I
RC39_RS03230	PWY-6964	ammonia assimilation cycle II
RC39_RS03245	PWY-6123	inosine-5'-phosphate biosynthesis I
RC39_RS03245	PWY-7234	inosine-5'-phosphate biosynthesis III
RC39_RS03270	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
RC39_RS03300	PWY-6829	tRNA methylation (yeast)
RC39_RS03300	PWY-7285	methylwyosine biosynthesis
RC39_RS03300	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
RC39_RS03310	PWY-5691	urate degradation to allantoin I
RC39_RS03310	PWY-7394	urate degradation to allantoin II
RC39_RS03315	PWY-6164	3-dehydroquinate biosynthesis I
RC39_RS03330	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RC39_RS03495	PWY-6936	seleno-amino acid biosynthesis
RC39_RS03495	PWY-7274	D-cycloserine biosynthesis
RC39_RS03500	PWY-40	putrescine biosynthesis I
RC39_RS03500	PWY-43	putrescine biosynthesis II
RC39_RS03500	PWY-6305	putrescine biosynthesis IV
RC39_RS03500	PWY-6834	spermidine biosynthesis III
RC39_RS03510	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RC39_RS03510	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RC39_RS03510	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RC39_RS03510	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RC39_RS03510	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RC39_RS03510	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RC39_RS03630	PWY-2201	folate transformations I
RC39_RS03630	PWY-5497	purine nucleobases degradation II (anaerobic)
RC39_RS03650	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RC39_RS03650	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RC39_RS03665	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RC39_RS03665	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RC39_RS03695	PWY-5686	UMP biosynthesis
RC39_RS03705	PWY-2941	L-lysine biosynthesis II
RC39_RS03705	PWY-2942	L-lysine biosynthesis III
RC39_RS03705	PWY-5097	L-lysine biosynthesis VI
RC39_RS03740	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RC39_RS03760	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RC39_RS03760	PWY-5667	CDP-diacylglycerol biosynthesis I
RC39_RS03760	PWY-6453	stigma estolide biosynthesis
RC39_RS03760	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
RC39_RS03760	PWY-7587	oleate biosynthesis III (cyanobacteria)
RC39_RS03830	PWY-5747	2-methylcitrate cycle II
RC39_RS03855	PWY-5484	glycolysis II (from fructose 6-phosphate)
RC39_RS03880	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RC39_RS03890	PWY-5669	phosphatidylethanolamine biosynthesis I
RC39_RS03920	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RC39_RS03930	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RC39_RS03930	PWY-2201	folate transformations I
RC39_RS03930	PWY-3841	folate transformations II
RC39_RS03930	PWY-5030	L-histidine degradation III
RC39_RS03930	PWY-5497	purine nucleobases degradation II (anaerobic)
RC39_RS03930	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RC39_RS03940	PWY-6823	molybdenum cofactor biosynthesis
RC39_RS03945	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RC39_RS03945	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RC39_RS03960	PWY-5958	acridone alkaloid biosynthesis
RC39_RS03960	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RC39_RS03960	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RC39_RS04095	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RC39_RS04140	PWY-6004	glycine betaine biosynthesis V (from glycine)
RC39_RS04145	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RC39_RS04180	PWY-6936	seleno-amino acid biosynthesis
RC39_RS04255	PWY-6605	adenine and adenosine salvage II
RC39_RS04255	PWY-6610	adenine and adenosine salvage IV
RC39_RS04275	PWY-4983	L-citrulline-nitric oxide cycle
RC39_RS04275	PWY-4984	urea cycle
RC39_RS04275	PWY-5	canavanine biosynthesis
RC39_RS04275	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RC39_RS04275	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RC39_RS04280	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RC39_RS04280	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RC39_RS04435	PWY-43	putrescine biosynthesis II
RC39_RS04450	PWY-6123	inosine-5'-phosphate biosynthesis I
RC39_RS04450	PWY-6124	inosine-5'-phosphate biosynthesis II
RC39_RS04450	PWY-7234	inosine-5'-phosphate biosynthesis III
RC39_RS04460	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RC39_RS04460	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RC39_RS04460	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RC39_RS04780	PWY-4981	L-proline biosynthesis II (from arginine)
RC39_RS04780	PWY-4984	urea cycle
RC39_RS04780	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RC39_RS04785	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RC39_RS04785	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RC39_RS04790	PWY-6168	flavin biosynthesis III (fungi)
RC39_RS04790	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RC39_RS04850	PWY-6164	3-dehydroquinate biosynthesis I
RC39_RS04860	PWY-6700	queuosine biosynthesis
RC39_RS04930	PWY-2941	L-lysine biosynthesis II
RC39_RS04930	PWY-2942	L-lysine biosynthesis III
RC39_RS04930	PWY-5097	L-lysine biosynthesis VI
RC39_RS04930	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RC39_RS04930	PWY-6559	spermidine biosynthesis II
RC39_RS04930	PWY-6562	norspermidine biosynthesis
RC39_RS04930	PWY-7153	grixazone biosynthesis
RC39_RS04930	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RC39_RS05010	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RC39_RS05010	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RC39_RS05010	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RC39_RS05010	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RC39_RS05030	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RC39_RS05030	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RC39_RS05030	PWY-6897	thiamin salvage II
RC39_RS05030	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RC39_RS05030	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RC39_RS05030	PWY-7356	thiamin salvage IV (yeast)
RC39_RS05030	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RC39_RS05035	PWY-6892	thiazole biosynthesis I (E. coli)
RC39_RS05035	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
RC39_RS05040	PWY-6891	thiazole biosynthesis II (Bacillus)
RC39_RS05040	PWY-6892	thiazole biosynthesis I (E. coli)
RC39_RS05085	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RC39_RS05085	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RC39_RS05100	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RC39_RS05100	PWY-6596	adenosine nucleotides degradation I
RC39_RS05100	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS05105	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
RC39_RS05140	PWY-5269	cardiolipin biosynthesis II
RC39_RS05140	PWY-5668	cardiolipin biosynthesis I
RC39_RS05185	PWY-3341	L-proline biosynthesis III
RC39_RS05185	PWY-4981	L-proline biosynthesis II (from arginine)
RC39_RS05185	PWY-6344	L-ornithine degradation II (Stickland reaction)
RC39_RS05205	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RC39_RS05205	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RC39_RS05210	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RC39_RS05210	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RC39_RS05210	PWY-6897	thiamin salvage II
RC39_RS05210	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RC39_RS05210	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RC39_RS05210	PWY-7356	thiamin salvage IV (yeast)
RC39_RS05210	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RC39_RS05215	PWY-6910	hydroxymethylpyrimidine salvage
RC39_RS05215	PWY-7356	thiamin salvage IV (yeast)
RC39_RS05215	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RC39_RS05245	PWY-2161	folate polyglutamylation
RC39_RS05285	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RC39_RS05285	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
RC39_RS05295	PWY-5686	UMP biosynthesis
RC39_RS05325	PWY-7560	methylerythritol phosphate pathway II
RC39_RS05375	PWY-5669	phosphatidylethanolamine biosynthesis I
RC39_RS05455	PWY-3821	galactose degradation III
RC39_RS05455	PWY-6317	galactose degradation I (Leloir pathway)
RC39_RS05455	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
RC39_RS05455	PWY-6527	stachyose degradation
RC39_RS05455	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
RC39_RS05455	PWY-7344	UDP-D-galactose biosynthesis
RC39_RS05480	PWY-3221	dTDP-L-rhamnose biosynthesis II
RC39_RS05480	PWY-6808	dTDP-D-forosamine biosynthesis
RC39_RS05480	PWY-6942	dTDP-D-desosamine biosynthesis
RC39_RS05480	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RC39_RS05480	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
RC39_RS05480	PWY-6974	dTDP-L-olivose biosynthesis
RC39_RS05480	PWY-6976	dTDP-L-mycarose biosynthesis
RC39_RS05480	PWY-7104	dTDP-L-megosamine biosynthesis
RC39_RS05480	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
RC39_RS05480	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
RC39_RS05480	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
RC39_RS05480	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
RC39_RS05480	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
RC39_RS05480	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
RC39_RS05480	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
RC39_RS05480	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
RC39_RS05480	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
RC39_RS05480	PWY-7688	RC39_RS05480
RC39_RS05485	PWY-3221	dTDP-L-rhamnose biosynthesis II
RC39_RS05485	PWY-6808	dTDP-D-forosamine biosynthesis
RC39_RS05485	PWY-6942	dTDP-D-desosamine biosynthesis
RC39_RS05485	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RC39_RS05485	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
RC39_RS05485	PWY-6974	dTDP-L-olivose biosynthesis
RC39_RS05485	PWY-6976	dTDP-L-mycarose biosynthesis
RC39_RS05485	PWY-7104	dTDP-L-megosamine biosynthesis
RC39_RS05485	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
RC39_RS05485	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
RC39_RS05485	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
RC39_RS05485	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
RC39_RS05485	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
RC39_RS05485	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
RC39_RS05485	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
RC39_RS05485	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
RC39_RS05485	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
RC39_RS05485	PWY-7688	RC39_RS05485
RC39_RS05490	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RC39_RS05490	PWY-7688	RC39_RS05490
RC39_RS05495	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RC39_RS05495	PWY-7688	RC39_RS05495
RC39_RS05565	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
RC39_RS05600	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS05690	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS05785	PWY-5667	CDP-diacylglycerol biosynthesis I
RC39_RS05785	PWY-5981	CDP-diacylglycerol biosynthesis III
RC39_RS05795	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
RC39_RS05795	PWY-6153	autoinducer AI-2 biosynthesis I
RC39_RS05795	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
RC39_RS05810	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RC39_RS05810	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
RC39_RS05810	PWY-6936	seleno-amino acid biosynthesis
RC39_RS05810	PWY-702	L-methionine biosynthesis II
RC39_RS05815	PWY-2201	folate transformations I
RC39_RS05815	PWY-3841	folate transformations II
RC39_RS05895	PWY-6167	flavin biosynthesis II (archaea)
RC39_RS05895	PWY-6168	flavin biosynthesis III (fungi)
RC39_RS05895	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS06005	PWY-7294	xylose degradation IV
RC39_RS06005	PWY-7295	L-arabinose degradation IV
RC39_RS06025	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RC39_RS06025	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RC39_RS06050	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS06060	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RC39_RS06060	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RC39_RS06060	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RC39_RS06160	PWY-723	alkylnitronates degradation
RC39_RS06240	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
RC39_RS06240	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
RC39_RS06245	PWY-7183	pyrimidine nucleobases salvage I
RC39_RS06255	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RC39_RS06275	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RC39_RS06280	PWY-1042	glycolysis IV (plant cytosol)
RC39_RS06280	PWY-1622	formaldehyde assimilation I (serine pathway)
RC39_RS06280	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RC39_RS06280	PWY-5484	glycolysis II (from fructose 6-phosphate)
RC39_RS06280	PWY-5723	Rubisco shunt
RC39_RS06280	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RC39_RS06280	PWY-6143	CMP-pseudaminate biosynthesis
RC39_RS06280	PWY-6886	1-butanol autotrophic biosynthesis
RC39_RS06280	PWY-6901	superpathway of glucose and xylose degradation
RC39_RS06280	PWY-7003	glycerol degradation to butanol
RC39_RS06280	PWY-7124	ethylene biosynthesis V (engineered)
RC39_RS06280	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RC39_RS06280	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
RC39_RS06280	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
RC39_RS06280	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
RC39_RS06280	PWY-7719	RC39_RS06280
RC39_RS06320	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RC39_RS06320	PWY-6143	CMP-pseudaminate biosynthesis
RC39_RS06355	PWY-6143	CMP-pseudaminate biosynthesis
RC39_RS06400	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
RC39_RS06400	PWY-5368	dimorphecolate biosynthesis
RC39_RS06400	PWY-5995	linoleate biosynthesis I (plants)
RC39_RS06400	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
RC39_RS06400	PWY-6803	phosphatidylcholine acyl editing
RC39_RS06400	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
RC39_RS06400	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
RC39_RS06400	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
RC39_RS06400	PWY-7470	phosphatidylcholine biosynthesis VII
RC39_RS06400	PWY-7618	ricinoleate biosynthesis
RC39_RS06410	PWY-7294	xylose degradation IV
RC39_RS06410	PWY-7295	L-arabinose degradation IV
RC39_RS06410	PWY-7560	methylerythritol phosphate pathway II
RC39_RS06415	PWY-5667	CDP-diacylglycerol biosynthesis I
RC39_RS06415	PWY-5981	CDP-diacylglycerol biosynthesis III
RC39_RS06430	PWY-5964	guanylyl molybdenum cofactor biosynthesis
RC39_RS06430	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
RC39_RS06435	PWY-6803	phosphatidylcholine acyl editing
RC39_RS06435	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
RC39_RS06435	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
RC39_RS06435	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
RC39_RS06470	PWY-5674	nitrate reduction IV (dissimilatory)
RC39_RS06515	PWY-5392	reductive TCA cycle II
RC39_RS06515	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RC39_RS06515	PWY-5690	TCA cycle II (plants and fungi)
RC39_RS06515	PWY-5913	TCA cycle VI (obligate autotrophs)
RC39_RS06515	PWY-6728	methylaspartate cycle
RC39_RS06515	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RC39_RS06515	PWY-7254	TCA cycle VII (acetate-producers)
RC39_RS06515	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RC39_RS06520	PWY-6749	CMP-legionaminate biosynthesis I
RC39_RS06530	PWY-5198	factor 420 biosynthesis
RC39_RS06530	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
RC39_RS06530	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
RC39_RS06560	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
RC39_RS06640	PWY-6123	inosine-5'-phosphate biosynthesis I
RC39_RS06640	PWY-6124	inosine-5'-phosphate biosynthesis II
RC39_RS06640	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS06640	PWY-7234	inosine-5'-phosphate biosynthesis III
RC39_RS06665	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RC39_RS06665	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RC39_RS06665	PWY-5989	stearate biosynthesis II (bacteria and plants)
RC39_RS06665	PWY-6113	superpathway of mycolate biosynthesis
RC39_RS06665	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RC39_RS06665	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RC39_RS06665	PWY-7663	gondoate biosynthesis (anaerobic)
RC39_RS06665	PWY-7664	oleate biosynthesis IV (anaerobic)
RC39_RS06665	PWYG-321	mycolate biosynthesis
RC39_RS06670	PWY-1042	glycolysis IV (plant cytosol)
RC39_RS06670	PWY-5484	glycolysis II (from fructose 6-phosphate)
RC39_RS06670	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RC39_RS06670	PWY-7003	glycerol degradation to butanol
RC39_RS06675	PWY-1042	glycolysis IV (plant cytosol)
RC39_RS06675	PWY-5484	glycolysis II (from fructose 6-phosphate)
RC39_RS06675	PWY-6886	1-butanol autotrophic biosynthesis
RC39_RS06675	PWY-6901	superpathway of glucose and xylose degradation
RC39_RS06675	PWY-7003	glycerol degradation to butanol
RC39_RS06680	PWY-1042	glycolysis IV (plant cytosol)
RC39_RS06680	PWY-5484	glycolysis II (from fructose 6-phosphate)
RC39_RS06680	PWY-6901	superpathway of glucose and xylose degradation
RC39_RS06680	PWY-7003	glycerol degradation to butanol
RC39_RS06685	PWY-5381	pyridine nucleotide cycling (plants)
RC39_RS06685	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RC39_RS06700	PWY-6749	CMP-legionaminate biosynthesis I
RC39_RS06710	PWY-6012	acyl carrier protein metabolism I
RC39_RS06710	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
RC39_RS06855	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
RC39_RS06860	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
RC39_RS06875	PWY-5481	pyruvate fermentation to lactate
RC39_RS06875	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
RC39_RS06875	PWY-6901	superpathway of glucose and xylose degradation
RC39_RS06980	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RC39_RS06980	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RC39_RS06980	PWY-6896	thiamin salvage I
RC39_RS06980	PWY-6897	thiamin salvage II
RC39_RS06995	PWY-6825	phosphatidylcholine biosynthesis V
RC39_RS07130	PWY-3781	aerobic respiration I (cytochrome c)
RC39_RS07130	PWY-4521	arsenite oxidation I (respiratory)
RC39_RS07130	PWY-6692	Fe(II) oxidation
RC39_RS07130	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RC39_RS07135	PWY-3781	aerobic respiration I (cytochrome c)
RC39_RS07135	PWY-4521	arsenite oxidation I (respiratory)
RC39_RS07135	PWY-6692	Fe(II) oxidation
RC39_RS07135	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RC39_RS07155	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RC39_RS07155	PWY-5686	UMP biosynthesis
RC39_RS07155	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RC39_RS07175	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS07200	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
RC39_RS07200	PWY-6853	ethylene biosynthesis II (microbes)
RC39_RS07200	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RC39_RS07205	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
RC39_RS07260	PWY-6562	norspermidine biosynthesis
RC39_RS07275	PWY-6823	molybdenum cofactor biosynthesis
RC39_RS07280	PWY-6823	molybdenum cofactor biosynthesis
RC39_RS07305	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RC39_RS07305	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RC39_RS07305	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RC39_RS07315	PWY-2941	L-lysine biosynthesis II
RC39_RS07315	PWY-5097	L-lysine biosynthesis VI
RC39_RS07335	PWY-3801	sucrose degradation II (sucrose synthase)
RC39_RS07335	PWY-5054	sorbitol biosynthesis I
RC39_RS07335	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RC39_RS07335	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RC39_RS07335	PWY-5659	GDP-mannose biosynthesis
RC39_RS07335	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RC39_RS07335	PWY-621	sucrose degradation III (sucrose invertase)
RC39_RS07335	PWY-622	starch biosynthesis
RC39_RS07335	PWY-6981	chitin biosynthesis
RC39_RS07335	PWY-6992	1,5-anhydrofructose degradation
RC39_RS07335	PWY-7238	sucrose biosynthesis II
RC39_RS07335	PWY-7347	sucrose biosynthesis III
RC39_RS07335	PWY-7385	1,3-propanediol biosynthesis (engineered)
RC39_RS07340	PWY-3801	sucrose degradation II (sucrose synthase)
RC39_RS07340	PWY-6527	stachyose degradation
RC39_RS07340	PWY-7238	sucrose biosynthesis II
RC39_RS07340	PWY-7343	UDP-glucose biosynthesis
RC39_RS07720	PWY-7560	methylerythritol phosphate pathway II
RC39_RS07730	PWY-5278	sulfite oxidation III
RC39_RS07730	PWY-5340	sulfate activation for sulfonation
RC39_RS07730	PWY-6683	sulfate reduction III (assimilatory)
RC39_RS07730	PWY-6932	selenate reduction
RC39_RS07735	PWY-5269	cardiolipin biosynthesis II
RC39_RS07735	PWY-5668	cardiolipin biosynthesis I
RC39_RS07750	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RC39_RS07750	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RC39_RS07815	PWY-5525	D-glucuronate degradation I
RC39_RS07875	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RC39_RS07930	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RC39_RS07930	PWY-5723	Rubisco shunt
RC39_RS07930	PWY-6891	thiazole biosynthesis II (Bacillus)
RC39_RS07930	PWY-6892	thiazole biosynthesis I (E. coli)
RC39_RS07930	PWY-6901	superpathway of glucose and xylose degradation
RC39_RS07930	PWY-7560	methylerythritol phosphate pathway II
RC39_RS07965	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RC39_RS07965	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RC39_RS08090	PWY-1042	glycolysis IV (plant cytosol)
RC39_RS08090	PWY-1622	formaldehyde assimilation I (serine pathway)
RC39_RS08090	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RC39_RS08090	PWY-5484	glycolysis II (from fructose 6-phosphate)
RC39_RS08090	PWY-5723	Rubisco shunt
RC39_RS08090	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RC39_RS08090	PWY-6886	1-butanol autotrophic biosynthesis
RC39_RS08090	PWY-6901	superpathway of glucose and xylose degradation
RC39_RS08090	PWY-7003	glycerol degradation to butanol
RC39_RS08090	PWY-7124	ethylene biosynthesis V (engineered)
RC39_RS08090	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RC39_RS08110	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RC39_RS08110	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RC39_RS08135	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
RC39_RS08310	PWY-2201	folate transformations I
RC39_RS08360	PWY-7396	butanol and isobutanol biosynthesis (engineered)
RC39_RS08365	PWY-6871	3-methylbutanol biosynthesis
RC39_RS08415	PWY-6700	queuosine biosynthesis
RC39_RS08490	PWY-5101	L-isoleucine biosynthesis II
RC39_RS08490	PWY-5103	L-isoleucine biosynthesis III
RC39_RS08490	PWY-5104	L-isoleucine biosynthesis IV
RC39_RS08490	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RC39_RS08505	PWY-6703	preQ<sub>0</sub> biosynthesis
RC39_RS08540	PWY-6123	inosine-5'-phosphate biosynthesis I
RC39_RS08540	PWY-6124	inosine-5'-phosphate biosynthesis II
RC39_RS08540	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RC39_RS08540	PWY-7234	inosine-5'-phosphate biosynthesis III
RC39_RS08545	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RC39_RS08545	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RC39_RS08545	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RC39_RS08545	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RC39_RS08545	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RC39_RS08545	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RC39_RS08545	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RC39_RS08545	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RC39_RS08555	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RC39_RS08555	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
RC39_RS08555	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RC39_RS08555	PWY-6936	seleno-amino acid biosynthesis
RC39_RS08555	PWY-702	L-methionine biosynthesis II
RC39_RS08560	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RC39_RS08560	PWY-7177	UTP and CTP dephosphorylation II
RC39_RS08560	PWY-7185	UTP and CTP dephosphorylation I
RC39_RS08680	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
