locus-tag class description CJ12660_RS00005 PF00308 Bacterial dnaA protein CJ12660_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CJ12660_RS00005 PF11638 DnaA N-terminal domain CJ12660_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CJ12660_RS00010 PF02767 DNA polymerase III beta subunit, central domain CJ12660_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CJ12660_RS00015 PF00204 DNA gyrase B CJ12660_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CJ12660_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12660_RS00015 PF01751 Toprim domain CJ12660_RS00030 PF03553 Na+/H+ antiporter family CJ12660_RS00030 PF13726 Na+-H+ antiporter family CJ12660_RS00035 PF04898 Glutamate synthase central domain CJ12660_RS00035 PF00310 Glutamine amidotransferases class-II CJ12660_RS00035 PF01493 GXGXG motif CJ12660_RS00035 PF01645 Conserved region in glutamate synthase CJ12660_RS00045 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ12660_RS00045 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJ12660_RS00050 PF01351 Ribonuclease HII CJ12660_RS00060 PF02915 Rubrerythrin CJ12660_RS00065 PF00920 Dehydratase family CJ12660_RS00070 PF07274 Protein of unknown function (DUF1440) CJ12660_RS00080 PF06508 Queuosine biosynthesis protein QueC CJ12660_RS00100 PF03150 Di-haem cytochrome c peroxidase CJ12660_RS00100 PF00034 Cytochrome c CJ12660_RS00100 PF14376 Haem-binding domain CJ12660_RS00105 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJ12660_RS00110 PF00849 RNA pseudouridylate synthase CJ12660_RS00115 PF10397 Adenylosuccinate lyase C-terminus CJ12660_RS00115 PF00206 Lyase CJ12660_RS00120 PF00317 Ribonucleotide reductase, all-alpha domain CJ12660_RS00120 PF02867 Ribonucleotide reductase, barrel domain CJ12660_RS00120 PF03477 ATP cone domain CJ12660_RS00125 PF00375 Sodium:dicarboxylate symporter family CJ12660_RS00130 PF02511 Thymidylate synthase complementing protein CJ12660_RS00135 PF06418 CTP synthase N-terminus CJ12660_RS00135 PF00117 Glutamine amidotransferase class-I CJ12660_RS00140 PF02272 DHHA1 domain CJ12660_RS00140 PF01368 DHH family CJ12660_RS00140 PF17768 RecJ OB domain CJ12660_RS00145 PF17763 Glutaminase/Asparaginase C-terminal domain CJ12660_RS00145 PF00710 Asparaginase, N-terminal CJ12660_RS00195 PF07690 Major Facilitator Superfamily CJ12660_RS00215 PF00679 Elongation factor G C-terminus CJ12660_RS00215 PF03144 Elongation factor Tu domain 2 CJ12660_RS00215 PF00009 Elongation factor Tu GTP binding domain CJ12660_RS00230 PF03963 Flagellar hook capping protein - N-terminal region CJ12660_RS00235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12660_RS00235 PF00460 Flagella basal body rod protein CJ12660_RS00235 PF07559 Flagellar basal body protein FlaE CJ12660_RS00260 PF00939 Sodium:sulfate symporter transmembrane region CJ12660_RS00280 PF00939 Sodium:sulfate symporter transmembrane region CJ12660_RS00315 PF04509 CheC-like family CJ12660_RS00315 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJ12660_RS00320 PF02154 Flagellar motor switch protein FliM CJ12660_RS00320 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJ12660_RS00325 PF04545 Sigma-70, region 4 CJ12660_RS00325 PF04539 Sigma-70 region 3 CJ12660_RS00325 PF04542 Sigma-70 region 2 CJ12660_RS00335 PF10609 NUBPL iron-transfer P-loop NTPase CJ12660_RS00340 PF00448 SRP54-type protein, GTPase domain CJ12660_RS00345 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CJ12660_RS00350 PF01220 Dehydroquinase class II CJ12660_RS00355 PF01979 Amidohydrolase family CJ12660_RS00360 PF01343 Peptidase family S49 CJ12660_RS00380 PF02589 LUD domain CJ12660_RS00380 PF11870 Domain of unknown function (DUF3390) CJ12660_RS00380 PF13183 4Fe-4S dicluster domain CJ12660_RS00385 PF02754 Cysteine-rich domain CJ12660_RS00390 PF02652 L-lactate permease CJ12660_RS00395 PF03498 Cytolethal distending toxin A/C domain CJ12660_RS00400 PF03372 Endonuclease/Exonuclease/phosphatase family CJ12660_RS00405 PF03498 Cytolethal distending toxin A/C domain CJ12660_RS00415 PF01654 Cytochrome bd terminal oxidase subunit I CJ12660_RS00420 PF02322 Cytochrome bd terminal oxidase subunit II CJ12660_RS00425 PF01177 Asp/Glu/Hydantoin racemase CJ12660_RS00430 PF03167 Uracil DNA glycosylase superfamily CJ12660_RS00435 PF00206 Lyase CJ12660_RS00435 PF10415 Fumarase C C-terminus CJ12660_RS00440 PF03605 Anaerobic c4-dicarboxylate membrane transporter CJ12660_RS00470 PF00829 Ribosomal prokaryotic L21 protein CJ12660_RS00475 PF01016 Ribosomal L27 protein CJ12660_RS00480 PF01018 GTP1/OBG CJ12660_RS00480 PF01926 50S ribosome-binding GTPase CJ12660_RS00485 PF00696 Amino acid kinase family CJ12660_RS00490 PF00551 Formyl transferase CJ12660_RS00490 PF02911 Formyl transferase, C-terminal domain CJ12660_RS00495 PF02237 Biotin protein ligase C terminal domain CJ12660_RS00495 PF08279 HTH domain CJ12660_RS00495 PF03099 Biotin/lipoate A/B protein ligase family CJ12660_RS00500 PF13614 AAA domain CJ12660_RS00505 PF02195 ParB-like nuclease domain CJ12660_RS00505 PF17762 HTH domain found in ParB protein CJ12660_RS00515 PF00430 ATP synthase B/B' CF(0) CJ12660_RS00520 PF00213 ATP synthase delta (OSCP) subunit CJ12660_RS00525 PF00306 ATP synthase alpha/beta chain, C terminal domain CJ12660_RS00525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ12660_RS00525 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJ12660_RS00530 PF00231 ATP synthase CJ12660_RS00535 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJ12660_RS00535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ12660_RS00540 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJ12660_RS00545 PF01618 MotA/TolQ/ExbB proton channel family CJ12660_RS00550 PF02472 Biopolymer transport protein ExbD/TolR CJ12660_RS00565 PF00223 Photosystem I psaA/psaB protein CJ12660_RS00565 PF00691 OmpA family CJ12660_RS00575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJ12660_RS00580 PF00698 Acyl transferase domain CJ12660_RS00585 PF01048 Phosphorylase superfamily CJ12660_RS00590 PF01171 PP-loop family CJ12660_RS00605 PF02130 Uncharacterized protein family UPF0054 CJ12660_RS00615 PF01207 Dihydrouridine synthase (Dus) CJ12660_RS00625 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJ12660_RS00630 PF02590 Predicted SPOUT methyltransferase CJ12660_RS00635 PF17848 Acetyl-coA carboxylase zinc finger domain CJ12660_RS00635 PF01039 Carboxyl transferase domain CJ12660_RS00640 PF00459 Inositol monophosphatase family CJ12660_RS00645 PF01103 Surface antigen CJ12660_RS00645 PF07244 Surface antigen variable number repeat CJ12660_RS00660 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CJ12660_RS00670 PF00288 GHMP kinases N terminal domain CJ12660_RS00680 PF00009 Elongation factor Tu GTP binding domain CJ12660_RS00680 PF11987 Translation-initiation factor 2 CJ12660_RS00680 PF04760 Translation initiation factor IF-2, N-terminal region CJ12660_RS00685 PF02033 Ribosome-binding factor A CJ12660_RS00690 PF02576 RimP N-terminal domain CJ12660_RS00690 PF17384 RimP C-terminal SH3 domain CJ12660_RS00705 PF00950 ABC 3 transport family CJ12660_RS00710 PF00005 ABC transporter CJ12660_RS00720 PF02743 Cache domain CJ12660_RS00720 PF00672 HAMP domain CJ12660_RS00720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12660_RS00725 PF05958 tRNA (Uracil-5-)-methyltransferase CJ12660_RS00725 PF01938 TRAM domain CJ12660_RS00735 PF04909 Amidohydrolase CJ12660_RS00745 PF01219 Prokaryotic diacylglycerol kinase CJ12660_RS00750 PF00884 Sulfatase CJ12660_RS00750 PF08019 Phosphoethanolamine transferase EptA/EptB CJ12660_RS00755 PF03372 Endonuclease/Exonuclease/phosphatase family CJ12660_RS00765 PF04359 Protein of unknown function (DUF493) CJ12660_RS00770 PF01967 MoaC family CJ12660_RS00780 PF00083 Sugar (and other) transporter CJ12660_RS00800 PF00672 HAMP domain CJ12660_RS00800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12660_RS00800 PF17202 Single cache domain 3 CJ12660_RS00805 PF00453 Ribosomal protein L20 CJ12660_RS00810 PF01632 Ribosomal protein L35 CJ12660_RS00820 PF01814 Hemerythrin HHE cation binding domain CJ12660_RS00825 PF00266 Aminotransferase class-V CJ12660_RS00830 PF04324 BFD-like [2Fe-2S] binding domain CJ12660_RS00830 PF01106 NifU-like domain CJ12660_RS00830 PF01592 NifU-like N terminal domain CJ12660_RS00835 PF00924 Mechanosensitive ion channel CJ12660_RS00840 PF00484 Carbonic anhydrase CJ12660_RS00845 PF01027 Inhibitor of apoptosis-promoting Bax1 CJ12660_RS00850 PF03840 Preprotein translocase SecG subunit CJ12660_RS00855 PF01765 Ribosome recycling factor CJ12660_RS00860 PF00156 Phosphoribosyl transferase domain CJ12660_RS00870 PF00268 Ribonucleotide reductase, small chain CJ12660_RS00875 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CJ12660_RS00875 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CJ12660_RS00880 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12660_RS00890 PF00202 Aminotransferase class-III CJ12660_RS00895 PF00696 Amino acid kinase family CJ12660_RS00905 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJ12660_RS00905 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJ12660_RS00935 PF02395 Immunoglobulin A1 protease CJ12660_RS00935 PF03797 Autotransporter beta-domain CJ12660_RS00950 PF00707 Translation initiation factor IF-3, C-terminal domain CJ12660_RS00950 PF05198 Translation initiation factor IF-3, N-terminal domain CJ12660_RS00955 PF03129 Anticodon binding domain CJ12660_RS00955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJ12660_RS00955 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJ12660_RS00960 PF02673 Bacitracin resistance protein BacA CJ12660_RS00965 PF03169 OPT oligopeptide transporter protein CJ12660_RS00970 PF03600 Citrate transporter CJ12660_RS00995 PF16193 AAA C-terminal domain CJ12660_RS00995 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJ12660_RS00995 PF01661 Macro domain CJ12660_RS00995 PF12002 MgsA AAA+ ATPase C terminal CJ12660_RS01000 PF01113 Dihydrodipicolinate reductase, N-terminus CJ12660_RS01000 PF05173 Dihydrodipicolinate reductase, C-terminus CJ12660_RS01005 PF00156 Phosphoribosyl transferase domain CJ12660_RS01010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ12660_RS01010 PF18269 T3SS EscN ATPase C-terminal domain CJ12660_RS01015 PF01227 GTP cyclohydrolase I CJ12660_RS01020 PF05698 Bacterial trigger factor protein (TF) C-terminus CJ12660_RS01020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJ12660_RS01020 PF05697 Bacterial trigger factor protein (TF) CJ12660_RS01025 PF00574 Clp protease CJ12660_RS01030 PF01327 Polypeptide deformylase CJ12660_RS01035 PF01078 Magnesium chelatase, subunit ChlI CJ12660_RS01035 PF13335 Magnesium chelatase, subunit ChlI C-terminal CJ12660_RS01045 PF01256 Carbohydrate kinase CJ12660_RS01045 PF03853 YjeF-related protein N-terminus CJ12660_RS01050 PF00551 Formyl transferase CJ12660_RS01055 PF03741 Integral membrane protein TerC family CJ12660_RS01060 PF03831 PhnA domain CJ12660_RS01060 PF08274 PhnA Zinc-Ribbon CJ12660_RS01070 PF01595 Cyclin M transmembrane N-terminal domain CJ12660_RS01070 PF03471 Transporter associated domain CJ12660_RS01070 PF00571 CBS domain CJ12660_RS01075 PF05992 SbmA/BacA-like family CJ12660_RS01085 PF02472 Biopolymer transport protein ExbD/TolR CJ12660_RS01090 PF01618 MotA/TolQ/ExbB proton channel family CJ12660_RS01095 PF00593 TonB dependent receptor CJ12660_RS01095 PF07715 TonB-dependent Receptor Plug Domain CJ12660_RS01110 PF13416 Bacterial extracellular solute-binding protein CJ12660_RS01120 PF08402 TOBE domain CJ12660_RS01120 PF00005 ABC transporter CJ12660_RS01125 PF16653 Saccharopine dehydrogenase C-terminal domain CJ12660_RS01125 PF03435 Saccharopine dehydrogenase NADP binding domain CJ12660_RS01140 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJ12660_RS01140 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJ12660_RS01155 PF02659 Putative manganese efflux pump CJ12660_RS01180 PF06463 Molybdenum Cofactor Synthesis C CJ12660_RS01180 PF04055 Radical SAM superfamily CJ12660_RS01205 PF04452 RNA methyltransferase CJ12660_RS01210 PF01197 Ribosomal protein L31 CJ12660_RS01215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ12660_RS01220 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJ12660_RS01220 PF00588 SpoU rRNA Methylase family CJ12660_RS01235 PF00155 Aminotransferase class I and II CJ12660_RS01240 PF01842 ACT domain CJ12660_RS01240 PF00742 Homoserine dehydrogenase CJ12660_RS01240 PF03447 Homoserine dehydrogenase, NAD binding domain CJ12660_RS01245 PF02021 Uncharacterised protein family UPF0102 CJ12660_RS01250 PF00085 Thioredoxin CJ12660_RS01255 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ12660_RS01265 PF00672 HAMP domain CJ12660_RS01265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12660_RS01265 PF17200 Single Cache domain 2 CJ12660_RS01270 PF02535 ZIP Zinc transporter CJ12660_RS01275 PF18364 Molybdopterin oxidoreductase N-terminal domain CJ12660_RS01275 PF01568 Molydopterin dinucleotide binding domain CJ12660_RS01275 PF00384 Molybdopterin oxidoreductase CJ12660_RS01295 PF01145 SPFH domain / Band 7 family CJ12660_RS01300 PF01063 Amino-transferase class IV CJ12660_RS01305 PF01361 Tautomerase enzyme CJ12660_RS01310 PF00578 AhpC/TSA family CJ12660_RS01315 PF02677 Epoxyqueuosine reductase QueH CJ12660_RS01320 PF07977 FabA-like domain CJ12660_RS01325 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CJ12660_RS01325 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12660_RS01330 PF10431 C-terminal, D2-small domain, of ClpB protein CJ12660_RS01330 PF06689 ClpX C4-type zinc finger CJ12660_RS01330 PF07724 AAA domain (Cdc48 subfamily) CJ12660_RS01345 PF02142 MGS-like domain CJ12660_RS01345 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJ12660_RS01345 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ12660_RS01355 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJ12660_RS01365 PF01584 CheW-like domain CJ12660_RS01370 PF00072 Response regulator receiver domain CJ12660_RS01370 PF01627 Hpt domain CJ12660_RS01370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12660_RS01370 PF02895 Signal transducing histidine kinase, homodimeric domain CJ12660_RS01370 PF01584 CheW-like domain CJ12660_RS01375 PF01584 CheW-like domain CJ12660_RS01375 PF00072 Response regulator receiver domain CJ12660_RS01385 PF03449 Transcription elongation factor, N-terminal CJ12660_RS01385 PF01272 Transcription elongation factor, GreA/GreB, C-term CJ12660_RS01390 PF02684 Lipid-A-disaccharide synthetase CJ12660_RS01405 PF07690 Major Facilitator Superfamily CJ12660_RS01410 PF01975 Survival protein SurE CJ12660_RS01420 PF13673 Acetyltransferase (GNAT) domain CJ12660_RS01425 PF02261 Aspartate decarboxylase CJ12660_RS01430 PF02569 Pantoate-beta-alanine ligase CJ12660_RS01435 PF02548 Ketopantoate hydroxymethyltransferase CJ12660_RS01440 PF00905 Penicillin binding protein transpeptidase domain CJ12660_RS01445 PF12857 TOBE-like domain CJ12660_RS01445 PF00005 ABC transporter CJ12660_RS01445 PF17850 CysA C-terminal regulatory domain CJ12660_RS01450 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS01470 PF04301 Protein of unknown function (DUF452) CJ12660_RS01475 PF00155 Aminotransferase class I and II CJ12660_RS01480 PF00202 Aminotransferase class-III CJ12660_RS01490 PF00893 Small Multidrug Resistance protein CJ12660_RS01500 PF14693 Ribosomal protein TL5, C-terminal domain CJ12660_RS01500 PF01386 Ribosomal L25p family CJ12660_RS01505 PF01195 Peptidyl-tRNA hydrolase CJ12660_RS01515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJ12660_RS01515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJ12660_RS01525 PF01842 ACT domain CJ12660_RS01525 PF01817 Chorismate mutase type II CJ12660_RS01525 PF00800 Prephenate dehydratase CJ12660_RS01530 PF00155 Aminotransferase class I and II CJ12660_RS01535 PF01514 Secretory protein of YscJ/FliF family CJ12660_RS01535 PF08345 Flagellar M-ring protein C-terminal CJ12660_RS01540 PF01706 FliG C-terminal domain CJ12660_RS01540 PF14841 FliG middle domain CJ12660_RS01540 PF14842 FliG N-terminal domain CJ12660_RS01550 PF02779 Transketolase, pyrimidine binding domain CJ12660_RS01550 PF02780 Transketolase, C-terminal domain CJ12660_RS01550 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CJ12660_RS01565 PF01209 ubiE/COQ5 methyltransferase family CJ12660_RS01570 PF02601 Exonuclease VII, large subunit CJ12660_RS01570 PF13742 OB-fold nucleic acid binding domain CJ12660_RS01575 PF00266 Aminotransferase class-V CJ12660_RS01580 PF01042 Endoribonuclease L-PSP CJ12660_RS01585 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJ12660_RS01585 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJ12660_RS01590 PF02504 Fatty acid synthesis protein CJ12660_RS01595 PF01783 Ribosomal L32p protein family CJ12660_RS01605 PF00334 Nucleoside diphosphate kinase CJ12660_RS01610 PF00037 4Fe-4S binding domain CJ12660_RS01615 PF00578 AhpC/TSA family CJ12660_RS01615 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJ12660_RS01620 PF01312 FlhB HrpN YscU SpaS Family CJ12660_RS01625 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJ12660_RS01625 PF00691 OmpA family CJ12660_RS01630 PF01618 MotA/TolQ/ExbB proton channel family CJ12660_RS01635 PF01367 5'-3' exonuclease, C-terminal SAM fold CJ12660_RS01635 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJ12660_RS01635 PF01612 3'-5' exonuclease CJ12660_RS01635 PF00476 DNA polymerase family A CJ12660_RS01640 PF07690 Major Facilitator Superfamily CJ12660_RS01640 PF00083 Sugar (and other) transporter CJ12660_RS01645 PF01156 Inosine-uridine preferring nucleoside hydrolase CJ12660_RS01650 PF09335 SNARE associated Golgi protein CJ12660_RS01655 PF17760 UvrA interaction domain CJ12660_RS01655 PF17755 UvrA DNA-binding domain CJ12660_RS01655 PF00005 ABC transporter CJ12660_RS01660 PF01925 Sulfite exporter TauE/SafE CJ12660_RS01670 PF04715 Anthranilate synthase component I, N terminal region CJ12660_RS01670 PF00425 chorismate binding enzyme CJ12660_RS01675 PF02885 Glycosyl transferase family, helical bundle domain CJ12660_RS01675 PF00117 Glutamine amidotransferase class-I CJ12660_RS01675 PF00591 Glycosyl transferase family, a/b domain CJ12660_RS01680 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CJ12660_RS01685 PF00291 Pyridoxal-phosphate dependent enzyme CJ12660_RS01690 PF00290 Tryptophan synthase alpha chain CJ12660_RS01700 PF04509 CheC-like family CJ12660_RS01700 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJ12660_RS01715 PF00037 4Fe-4S binding domain CJ12660_RS01720 PF00486 Transcriptional regulatory protein, C terminal CJ12660_RS01720 PF00072 Response regulator receiver domain CJ12660_RS01730 PF02660 Glycerol-3-phosphate acyltransferase CJ12660_RS01735 PF00034 Cytochrome c CJ12660_RS01735 PF03150 Di-haem cytochrome c peroxidase CJ12660_RS01740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJ12660_RS01740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJ12660_RS01740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJ12660_RS01740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJ12660_RS01745 PF01252 Signal peptidase (SPase) II CJ12660_RS01750 PF03653 Uncharacterised protein family (UPF0093) CJ12660_RS01755 PF04055 Radical SAM superfamily CJ12660_RS01755 PF06969 HemN C-terminal domain CJ12660_RS01765 PF02321 Outer membrane efflux protein CJ12660_RS01770 PF00873 AcrB/AcrD/AcrF family CJ12660_RS01775 PF13533 Biotin-lipoyl like CJ12660_RS01790 PF01165 Ribosomal protein S21 CJ12660_RS01805 PF03738 Glutathionylspermidine synthase preATP-grasp CJ12660_RS01810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJ12660_RS01810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJ12660_RS01815 PF04461 Protein of unknown function (DUF520) CJ12660_RS01830 PF01434 Peptidase family M41 CJ12660_RS01830 PF17862 AAA+ lid domain CJ12660_RS01830 PF00004 ATPase family associated with various cellular activities (AAA) CJ12660_RS01830 PF06480 FtsH Extracellular CJ12660_RS01850 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJ12660_RS01855 PF01029 NusB family CJ12660_RS01860 PF00885 6,7-dimethyl-8-ribityllumazine synthase CJ12660_RS01865 PF00793 DAHP synthetase I family CJ12660_RS01875 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CJ12660_RS01875 PF01926 50S ribosome-binding GTPase CJ12660_RS01880 PF01202 Shikimate kinase CJ12660_RS01885 PF00579 tRNA synthetases class I (W and Y) CJ12660_RS01890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJ12660_RS01890 PF02403 Seryl-tRNA synthetase N-terminal domain CJ12660_RS01905 PF00391 PEP-utilising enzyme, mobile domain CJ12660_RS01905 PF00224 Pyruvate kinase, barrel domain CJ12660_RS01905 PF02887 Pyruvate kinase, alpha/beta domain CJ12660_RS01910 PF06039 Malate:quinone oxidoreductase (Mqo) CJ12660_RS01915 PF03309 Type III pantothenate kinase CJ12660_RS01925 PF15437 Plasminogen-binding protein pgbA C-terminal CJ12660_RS01935 PF02686 Glu-tRNAGln amidotransferase C subunit CJ12660_RS01945 PF01475 Ferric uptake regulator family CJ12660_RS01950 PF01336 OB-fold nucleic acid binding domain CJ12660_RS01950 PF00152 tRNA synthetases class II (D, K and N) CJ12660_RS01955 PF00464 Serine hydroxymethyltransferase CJ12660_RS01970 PF08501 Shikimate dehydrogenase substrate binding domain CJ12660_RS01980 PF01790 Prolipoprotein diacylglyceryl transferase CJ12660_RS01985 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CJ12660_RS01990 PF00890 FAD binding domain CJ12660_RS01990 PF02910 Fumarate reductase flavoprotein C-term CJ12660_RS01995 PF13183 4Fe-4S dicluster domain CJ12660_RS01995 PF13085 2Fe-2S iron-sulfur cluster binding domain CJ12660_RS02000 PF01926 50S ribosome-binding GTPase CJ12660_RS02000 PF10396 GTP-binding protein TrmE N-terminus CJ12660_RS02000 PF12631 MnmE helical domain CJ12660_RS02020 PF00732 GMC oxidoreductase CJ12660_RS02020 PF05199 GMC oxidoreductase CJ12660_RS02045 PF04264 YceI-like domain CJ12660_RS02075 PF00005 ABC transporter CJ12660_RS02075 PF12848 ABC transporter CJ12660_RS02090 PF09186 Domain of unknown function (DUF1949) CJ12660_RS02090 PF01205 Uncharacterized protein family UPF0029 CJ12660_RS02130 PF08245 Mur ligase middle domain CJ12660_RS02135 PF00953 Glycosyl transferase family 4 CJ12660_RS02140 PF01676 Metalloenzyme superfamily CJ12660_RS02140 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CJ12660_RS02160 PF02910 Fumarate reductase flavoprotein C-term CJ12660_RS02160 PF00890 FAD binding domain CJ12660_RS02165 PF13183 4Fe-4S dicluster domain CJ12660_RS02165 PF13085 2Fe-2S iron-sulfur cluster binding domain CJ12660_RS02170 PF02754 Cysteine-rich domain CJ12660_RS02175 PF03070 TENA/THI-4/PQQC family CJ12660_RS02180 PF00550 Phosphopantetheine attachment site CJ12660_RS02185 PF00109 Beta-ketoacyl synthase, N-terminal domain CJ12660_RS02185 PF02801 Beta-ketoacyl synthase, C-terminal domain CJ12660_RS02190 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CJ12660_RS02200 PF00293 NUDIX domain CJ12660_RS02205 PF13426 PAS domain CJ12660_RS02205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12660_RS02205 PF08447 PAS fold CJ12660_RS02215 PF00830 Ribosomal L28 family CJ12660_RS02220 PF00834 Ribulose-phosphate 3 epimerase family CJ12660_RS02225 PF00929 Exonuclease CJ12660_RS02225 PF14480 DNA polymerase III polC-type N-terminus I CJ12660_RS02225 PF02811 PHP domain CJ12660_RS02225 PF14579 Helix-hairpin-helix motif CJ12660_RS02225 PF11490 DNA polymerase III polC-type N-terminus II CJ12660_RS02225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJ12660_RS02225 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJ12660_RS02230 PF01964 Radical SAM ThiC family CJ12660_RS02250 PF04028 Domain of unknown function (DUF374) CJ12660_RS02255 PF04055 Radical SAM superfamily CJ12660_RS02255 PF01938 TRAM domain CJ12660_RS02255 PF00919 Uncharacterized protein family UPF0004 CJ12660_RS02265 PF08529 NusA N-terminal domain CJ12660_RS02265 PF13184 NusA-like KH domain CJ12660_RS02275 PF04055 Radical SAM superfamily CJ12660_RS02280 PF05193 Peptidase M16 inactive domain CJ12660_RS02285 PF00271 Helicase conserved C-terminal domain CJ12660_RS02285 PF04851 Type III restriction enzyme, res subunit CJ12660_RS02290 PF01152 Bacterial-like globin CJ12660_RS02300 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS02305 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS02310 PF00005 ABC transporter CJ12660_RS02335 PF00009 Elongation factor Tu GTP binding domain CJ12660_RS02335 PF03143 Elongation factor Tu C-terminal domain CJ12660_RS02335 PF03144 Elongation factor Tu domain 2 CJ12660_RS02340 PF00471 Ribosomal protein L33 CJ12660_RS02355 PF02357 Transcription termination factor nusG CJ12660_RS02360 PF03946 Ribosomal protein L11, N-terminal domain CJ12660_RS02360 PF00298 Ribosomal protein L11, RNA binding domain CJ12660_RS02365 PF00687 Ribosomal protein L1p/L10e family CJ12660_RS02370 PF00466 Ribosomal protein L10 CJ12660_RS02375 PF16320 Ribosomal protein L7/L12 dimerisation domain CJ12660_RS02375 PF00542 Ribosomal protein L7/L12 C-terminal domain CJ12660_RS02380 PF04560 RNA polymerase Rpb2, domain 7 CJ12660_RS02380 PF00562 RNA polymerase Rpb2, domain 6 CJ12660_RS02380 PF04563 RNA polymerase beta subunit CJ12660_RS02380 PF04561 RNA polymerase Rpb2, domain 2 CJ12660_RS02380 PF10385 RNA polymerase beta subunit external 1 domain CJ12660_RS02380 PF04565 RNA polymerase Rpb2, domain 3 CJ12660_RS02385 PF05000 RNA polymerase Rpb1, domain 4 CJ12660_RS02385 PF04998 RNA polymerase Rpb1, domain 5 CJ12660_RS02385 PF04983 RNA polymerase Rpb1, domain 3 CJ12660_RS02385 PF00623 RNA polymerase Rpb1, domain 2 CJ12660_RS02385 PF04997 RNA polymerase Rpb1, domain 1 CJ12660_RS02395 PF00701 Dihydrodipicolinate synthetase family CJ12660_RS02405 PF08666 SAF domain CJ12660_RS02405 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJ12660_RS02410 PF07690 Major Facilitator Superfamily CJ12660_RS02420 PF07690 Major Facilitator Superfamily CJ12660_RS02430 PF05336 L-rhamnose mutarotase CJ12660_RS02440 PF00164 Ribosomal protein S12/S23 CJ12660_RS02445 PF00177 Ribosomal protein S7p/S5e CJ12660_RS02450 PF14492 Elongation Factor G, domain II CJ12660_RS02450 PF03764 Elongation factor G, domain IV CJ12660_RS02450 PF00009 Elongation factor Tu GTP binding domain CJ12660_RS02450 PF03144 Elongation factor Tu domain 2 CJ12660_RS02450 PF00679 Elongation factor G C-terminus CJ12660_RS02465 PF05175 Methyltransferase small domain CJ12660_RS02480 PF00218 Indole-3-glycerol phosphate synthase CJ12660_RS02495 PF00909 Ammonium Transporter Family CJ12660_RS02500 PF00762 Ferrochelatase CJ12660_RS02505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJ12660_RS02505 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJ12660_RS02510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ12660_RS02515 PF01411 tRNA synthetases class II (A) CJ12660_RS02515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJ12660_RS02515 PF02272 DHHA1 domain CJ12660_RS02520 PF02545 Maf-like protein CJ12660_RS02525 PF00912 Transglycosylase CJ12660_RS02525 PF17092 Penicillin-binding protein OB-like domain CJ12660_RS02525 PF00905 Penicillin binding protein transpeptidase domain CJ12660_RS02530 PF00004 ATPase family associated with various cellular activities (AAA) CJ12660_RS02530 PF17871 AAA lid domain CJ12660_RS02530 PF02861 Clp amino terminal domain, pathogenicity island component CJ12660_RS02530 PF10431 C-terminal, D2-small domain, of ClpB protein CJ12660_RS02530 PF07724 AAA domain (Cdc48 subfamily) CJ12660_RS02535 PF02583 Metal-sensitive transcriptional repressor CJ12660_RS02540 PF03572 Peptidase family S41 CJ12660_RS02540 PF13180 PDZ domain CJ12660_RS02545 PF01259 SAICAR synthetase CJ12660_RS02550 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CJ12660_RS02565 PF01553 Acyltransferase CJ12660_RS02570 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJ12660_RS02575 PF00183 Hsp90 protein CJ12660_RS02575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12660_RS02580 PF00581 Rhodanese-like domain CJ12660_RS02610 PF02049 Flagellar hook-basal body complex protein FliE CJ12660_RS02615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12660_RS02615 PF00460 Flagella basal body rod protein CJ12660_RS02620 PF00460 Flagella basal body rod protein CJ12660_RS02635 PF03971 Monomeric isocitrate dehydrogenase CJ12660_RS02640 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJ12660_RS02640 PF00056 lactate/malate dehydrogenase, NAD binding domain CJ12660_RS02645 PF00549 CoA-ligase CJ12660_RS02645 PF08442 ATP-grasp domain CJ12660_RS02650 PF02629 CoA binding domain CJ12660_RS02650 PF00549 CoA-ligase CJ12660_RS02660 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CJ12660_RS02660 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CJ12660_RS02660 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CJ12660_RS02665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ12660_RS02685 PF00348 Polyprenyl synthetase CJ12660_RS02690 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CJ12660_RS02690 PF01488 Shikimate / quinate 5-dehydrogenase CJ12660_RS02690 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CJ12660_RS02695 PF03129 Anticodon binding domain CJ12660_RS02695 PF04073 Aminoacyl-tRNA editing domain CJ12660_RS02695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJ12660_RS02705 PF03900 Porphobilinogen deaminase, C-terminal domain CJ12660_RS02705 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CJ12660_RS02710 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJ12660_RS02720 PF07195 Flagellar hook-associated protein 2 C-terminus CJ12660_RS02720 PF02465 Flagellar hook-associated protein 2 N-terminus CJ12660_RS02720 PF07196 Flagellin hook IN motif CJ12660_RS02725 PF02561 Flagellar protein FliS CJ12660_RS02740 PF09285 Elongation factor P, C-terminal CJ12660_RS02740 PF08207 Elongation factor P (EF-P) KOW-like domain CJ12660_RS02740 PF01132 Elongation factor P (EF-P) OB domain CJ12660_RS02775 PF00171 Aldehyde dehydrogenase family CJ12660_RS02780 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ12660_RS02795 PF00772 DnaB-like helicase N terminal domain CJ12660_RS02795 PF03796 DnaB-like helicase C terminal domain CJ12660_RS02810 PF13099 Domain of unknown function (DUF3944) CJ12660_RS02810 PF03981 Ubiquinol-cytochrome C chaperone CJ12660_RS02815 PF13099 Domain of unknown function (DUF3944) CJ12660_RS02815 PF03981 Ubiquinol-cytochrome C chaperone CJ12660_RS02860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJ12660_RS02860 PF00925 GTP cyclohydrolase II CJ12660_RS02865 PF09424 Yqey-like protein CJ12660_RS02870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJ12660_RS02870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ12660_RS02870 PF00205 Thiamine pyrophosphate enzyme, central domain CJ12660_RS02875 PF10369 Small subunit of acetolactate synthase CJ12660_RS02880 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CJ12660_RS02880 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12660_RS02885 PF02547 Queuosine biosynthesis protein CJ12660_RS02890 PF00902 Sec-independent protein translocase protein (TatC) CJ12660_RS02895 PF02416 mttA/Hcf106 family CJ12660_RS02900 PF04055 Radical SAM superfamily CJ12660_RS02900 PF06969 HemN C-terminal domain CJ12660_RS02905 PF00293 NUDIX domain CJ12660_RS02910 PF00696 Amino acid kinase family CJ12660_RS02910 PF13840 ACT domain CJ12660_RS02910 PF01842 ACT domain CJ12660_RS02925 PF00809 Pterin binding enzyme CJ12660_RS02930 PF03120 NAD-dependent DNA ligase OB-fold domain CJ12660_RS02930 PF01653 NAD-dependent DNA ligase adenylation domain CJ12660_RS02930 PF00533 BRCA1 C Terminus (BRCT) domain CJ12660_RS02945 PF01687 Riboflavin kinase CJ12660_RS02945 PF06574 FAD synthetase CJ12660_RS02950 PF13847 Methyltransferase domain CJ12660_RS02965 PF03458 UPF0126 domain CJ12660_RS02975 PF10576 Iron-sulfur binding domain of endonuclease III CJ12660_RS02975 PF00633 Helix-hairpin-helix motif CJ12660_RS02975 PF00730 HhH-GPD superfamily base excision DNA repair protein CJ12660_RS02985 PF01116 Fructose-bisphosphate aldolase class-II CJ12660_RS03005 PF00209 Sodium:neurotransmitter symporter family CJ12660_RS03010 PF03473 MOSC domain CJ12660_RS03010 PF03475 3-alpha domain CJ12660_RS03015 PF00085 Thioredoxin CJ12660_RS03015 PF02683 Cytochrome C biogenesis protein transmembrane region CJ12660_RS03015 PF11412 Disulphide bond corrector protein DsbC CJ12660_RS03020 PF03976 Polyphosphate kinase 2 (PPK2) CJ12660_RS03025 PF07687 Peptidase dimerisation domain CJ12660_RS03025 PF01546 Peptidase family M20/M25/M40 CJ12660_RS03030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ12660_RS03035 PF02687 FtsX-like permease family CJ12660_RS03035 PF00005 ABC transporter CJ12660_RS03035 PF12704 MacB-like periplasmic core domain CJ12660_RS03040 PF02321 Outer membrane efflux protein CJ12660_RS03055 PF03062 MBOAT, membrane-bound O-acyltransferase family CJ12660_RS03060 PF00210 Ferritin-like domain CJ12660_RS03065 PF12849 PBP superfamily domain CJ12660_RS03070 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS03075 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS03080 PF00005 ABC transporter CJ12660_RS03090 PF01554 MatE CJ12660_RS03105 PF17788 HypF Kae1-like domain CJ12660_RS03105 PF01300 Telomere recombination CJ12660_RS03105 PF07503 HypF finger CJ12660_RS03105 PF00708 Acylphosphatase CJ12660_RS03110 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJ12660_RS03115 PF01455 HupF/HypC family CJ12660_RS03120 PF01924 Hydrogenase formation hypA family CJ12660_RS03125 PF00586 AIR synthase related protein, N-terminal domain CJ12660_RS03125 PF02769 AIR synthase related protein, C-terminal domain CJ12660_RS03130 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CJ12660_RS03145 PF00773 RNB domain CJ12660_RS03150 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJ12660_RS03150 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJ12660_RS03160 PF17782 DprA winged helix domain CJ12660_RS03160 PF02481 DNA recombination-mediator protein A CJ12660_RS03165 PF03652 Holliday junction resolvase CJ12660_RS03170 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CJ12660_RS03170 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CJ12660_RS03170 PF01189 16S rRNA methyltransferase RsmB/F CJ12660_RS03175 PF01625 Peptide methionine sulfoxide reductase CJ12660_RS03180 PF00719 Inorganic pyrophosphatase CJ12660_RS03190 PF01336 OB-fold nucleic acid binding domain CJ12660_RS03190 PF02938 GAD domain CJ12660_RS03190 PF00152 tRNA synthetases class II (D, K and N) CJ12660_RS03195 PF01513 ATP-NAD kinase CJ12660_RS03200 PF13476 AAA domain CJ12660_RS03205 PF00990 Diguanylate cyclase, GGDEF domain CJ12660_RS03205 PF00072 Response regulator receiver domain CJ12660_RS03210 PF01026 TatD related DNase CJ12660_RS03215 PF00877 NlpC/P60 family CJ12660_RS03215 PF01476 LysM domain CJ12660_RS03220 PF03330 Lytic transglycolase CJ12660_RS03220 PF05036 Sporulation related domain CJ12660_RS03240 PF01926 50S ribosome-binding GTPase CJ12660_RS03250 PF03717 Penicillin-binding Protein dimerisation domain CJ12660_RS03250 PF00905 Penicillin binding protein transpeptidase domain CJ12660_RS03255 PF00557 Metallopeptidase family M24 CJ12660_RS03255 PF01321 Creatinase/Prolidase N-terminal domain CJ12660_RS03260 PF00854 POT family CJ12660_RS03265 PF00854 POT family CJ12660_RS03275 PF00854 POT family CJ12660_RS03295 PF07650 KH domain CJ12660_RS03295 PF01926 50S ribosome-binding GTPase CJ12660_RS03300 PF10431 C-terminal, D2-small domain, of ClpB protein CJ12660_RS03300 PF07724 AAA domain (Cdc48 subfamily) CJ12660_RS03305 PF00227 Proteasome subunit CJ12660_RS03310 PF03948 Ribosomal protein L9, C-terminal domain CJ12660_RS03310 PF01281 Ribosomal protein L9, N-terminal domain CJ12660_RS03315 PF00764 Arginosuccinate synthase CJ12660_RS03320 PF01479 S4 domain CJ12660_RS03325 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CJ12660_RS03330 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ12660_RS03330 PF00005 ABC transporter CJ12660_RS03335 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJ12660_RS03335 PF04552 Sigma-54, DNA binding domain CJ12660_RS03335 PF04963 Sigma-54 factor, core binding domain CJ12660_RS03340 PF03605 Anaerobic c4-dicarboxylate membrane transporter CJ12660_RS03360 PF02669 K+-transporting ATPase, c chain CJ12660_RS03365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12660_RS03365 PF00512 His Kinase A (phospho-acceptor) domain CJ12660_RS03365 PF02702 Osmosensitive K+ channel His kinase sensor domain CJ12660_RS03365 PF13493 Domain of unknown function (DUF4118) CJ12660_RS03370 PF12344 Ultra-violet resistance protein B CJ12660_RS03370 PF00271 Helicase conserved C-terminal domain CJ12660_RS03370 PF04851 Type III restriction enzyme, res subunit CJ12660_RS03370 PF17757 UvrB interaction domain CJ12660_RS03370 PF02151 UvrB/uvrC motif CJ12660_RS03390 PF00270 DEAD/DEAH box helicase CJ12660_RS03390 PF00271 Helicase conserved C-terminal domain CJ12660_RS03390 PF17764 3′ DNA-binding domain (3′BD) CJ12660_RS03390 PF18074 Primosomal protein N C-terminal domain CJ12660_RS03390 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CJ12660_RS03400 PF04551 GcpE protein CJ12660_RS03405 PF02107 Flagellar L-ring protein CJ12660_RS03410 PF01515 Phosphate acetyl/butaryl transferase CJ12660_RS03415 PF00871 Acetokinase family CJ12660_RS03435 PF01795 MraW methylase family CJ12660_RS03440 PF13145 PPIC-type PPIASE domain CJ12660_RS03445 PF02491 SHS2 domain inserted in FTSA CJ12660_RS03450 PF00091 Tubulin/FtsZ family, GTPase domain CJ12660_RS03450 PF12327 FtsZ family, C-terminal domain CJ12660_RS03455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12660_RS03455 PF00460 Flagella basal body rod protein CJ12660_RS03460 PF00460 Flagella basal body rod protein CJ12660_RS03460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12660_RS03465 PF00120 Glutamine synthetase, catalytic domain CJ12660_RS03465 PF03951 Glutamine synthetase, beta-Grasp domain CJ12660_RS03475 PF01136 Peptidase family U32 CJ12660_RS03480 PF00731 AIR carboxylase CJ12660_RS03490 PF02091 Glycyl-tRNA synthetase alpha subunit CJ12660_RS03495 PF01784 NIF3 (NGG1p interacting factor 3) CJ12660_RS03505 PF02390 Putative methyltransferase CJ12660_RS03505 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CJ12660_RS03510 PF00849 RNA pseudouridylate synthase CJ12660_RS03515 PF02881 SRP54-type protein, helical bundle domain CJ12660_RS03515 PF00448 SRP54-type protein, GTPase domain CJ12660_RS03515 PF02978 Signal peptide binding domain CJ12660_RS03520 PF00886 Ribosomal protein S16 CJ12660_RS03530 PF01782 RimM N-terminal domain CJ12660_RS03530 PF05239 PRC-barrel domain CJ12660_RS03535 PF01746 tRNA (Guanine-1)-methyltransferase CJ12660_RS03540 PF01245 Ribosomal protein L19 CJ12660_RS03545 PF00576 HIUase/Transthyretin family CJ12660_RS03550 PF01474 Class-II DAHP synthetase family CJ12660_RS03555 PF03960 ArsC family CJ12660_RS03565 PF14579 Helix-hairpin-helix motif CJ12660_RS03565 PF02811 PHP domain CJ12660_RS03565 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJ12660_RS03565 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJ12660_RS03570 PF01168 Alanine racemase, N-terminal domain CJ12660_RS03575 PF00669 Bacterial flagellin N-terminal helical region CJ12660_RS03585 PF05175 Methyltransferase small domain CJ12660_RS03585 PF17827 PrmC N-terminal domain CJ12660_RS03590 PF01435 Peptidase family M48 CJ12660_RS03600 PF00994 Probable molybdopterin binding domain CJ12660_RS03605 PF01544 CorA-like Mg2+ transporter protein CJ12660_RS03625 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS03635 PF08402 TOBE domain CJ12660_RS03635 PF00005 ABC transporter CJ12660_RS03645 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ12660_RS03715 PF01385 Probable transposase CJ12660_RS03715 PF07282 Putative transposase DNA-binding domain CJ12660_RS03715 PF12323 Helix-turn-helix domain CJ12660_RS03720 PF03544 Gram-negative bacterial TonB protein C-terminal CJ12660_RS03725 PF07715 TonB-dependent Receptor Plug Domain CJ12660_RS03725 PF00593 TonB dependent receptor CJ12660_RS03735 PF01025 GrpE CJ12660_RS03740 PF00012 Hsp70 protein CJ12660_RS03750 PF12706 Beta-lactamase superfamily domain CJ12660_RS03760 PF00155 Aminotransferase class I and II CJ12660_RS03765 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12660_RS03765 PF06426 Serine acetyltransferase, N-terminal CJ12660_RS03770 PF17810 Arginine decarboxylase helical bundle domain CJ12660_RS03770 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJ12660_RS03770 PF17944 Arginine decarboxylase C-terminal helical extension CJ12660_RS03775 PF13393 Histidyl-tRNA synthetase CJ12660_RS03775 PF03129 Anticodon binding domain CJ12660_RS03780 PF02223 Thymidylate kinase CJ12660_RS03785 PF01467 Cytidylyltransferase-like CJ12660_RS03790 PF02441 Flavoprotein CJ12660_RS03800 PF03180 NLPA lipoprotein CJ12660_RS03805 PF03180 NLPA lipoprotein CJ12660_RS03810 PF03180 NLPA lipoprotein CJ12660_RS03815 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS03820 PF09383 NIL domain CJ12660_RS03820 PF00005 ABC transporter CJ12660_RS03825 PF10458 Valyl tRNA synthetase tRNA binding arm CJ12660_RS03825 PF00133 tRNA synthetases class I (I, L, M and V) CJ12660_RS03825 PF08264 Anticodon-binding domain of tRNA CJ12660_RS03835 PF13361 UvrD-like helicase C-terminal domain CJ12660_RS03835 PF00580 UvrD/REP helicase N-terminal domain CJ12660_RS03845 PF08534 Redoxin CJ12660_RS03850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ12660_RS03850 PF00384 Molybdopterin oxidoreductase CJ12660_RS03850 PF01568 Molydopterin dinucleotide binding domain CJ12660_RS03855 PF12800 4Fe-4S binding domain CJ12660_RS03855 PF12838 4Fe-4S dicluster domain CJ12660_RS03860 PF13187 4Fe-4S dicluster domain CJ12660_RS03860 PF12801 4Fe-4S binding domain CJ12660_RS03865 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CJ12660_RS03895 PF12627 Probable RNA and SrmB- binding site of polymerase A CJ12660_RS03895 PF01743 Poly A polymerase head domain CJ12660_RS03895 PF13735 tRNA nucleotidyltransferase domain 2 putative CJ12660_RS03900 PF00551 Formyl transferase CJ12660_RS03900 PF01842 ACT domain CJ12660_RS03905 PF00266 Aminotransferase class-V CJ12660_RS03915 PF00512 His Kinase A (phospho-acceptor) domain CJ12660_RS03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12660_RS03925 PF08245 Mur ligase middle domain CJ12660_RS03925 PF01225 Mur ligase family, catalytic domain CJ12660_RS03925 PF02875 Mur ligase family, glutamate ligase domain CJ12660_RS03940 PF07478 D-ala D-ala ligase C-terminus CJ12660_RS03940 PF01820 D-ala D-ala ligase N-terminus CJ12660_RS03945 PF07499 RuvA, C-terminal domain CJ12660_RS03945 PF01330 RuvA N terminal domain CJ12660_RS03955 PF03023 Lipid II flippase MurJ CJ12660_RS03960 PF01406 tRNA synthetases class I (C) catalytic domain CJ12660_RS03960 PF09190 DALR domain CJ12660_RS03965 PF00005 ABC transporter CJ12660_RS03965 PF00664 ABC transporter transmembrane region CJ12660_RS03970 PF01180 Dihydroorotate dehydrogenase CJ12660_RS03975 PF00675 Insulinase (Peptidase family M16) CJ12660_RS03975 PF05193 Peptidase M16 inactive domain CJ12660_RS03980 PF00701 Dihydrodipicolinate synthetase family CJ12660_RS03995 PF00753 Metallo-beta-lactamase superfamily CJ12660_RS04000 PF02540 NAD synthase CJ12660_RS04005 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CJ12660_RS04010 PF00291 Pyridoxal-phosphate dependent enzyme CJ12660_RS04015 PF02348 Cytidylyltransferase CJ12660_RS04030 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ12660_RS04045 PF00813 FliP family CJ12660_RS04050 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12660_RS04050 PF12804 MobA-like NTP transferase domain CJ12660_RS04055 PF02441 Flavoprotein CJ12660_RS04055 PF04127 DNA / pantothenate metabolism flavoprotein CJ12660_RS04065 PF01255 Putative undecaprenyl diphosphate synthase CJ12660_RS04080 PF01416 tRNA pseudouridine synthase CJ12660_RS04085 PF13291 ACT domain CJ12660_RS04085 PF00291 Pyridoxal-phosphate dependent enzyme CJ12660_RS04100 PF05958 tRNA (Uracil-5-)-methyltransferase CJ12660_RS04105 PF03553 Na+/H+ antiporter family CJ12660_RS04110 PF00106 short chain dehydrogenase CJ12660_RS04120 PF00330 Aconitase family (aconitate hydratase) CJ12660_RS04120 PF06434 Aconitate hydratase 2 N-terminus CJ12660_RS04120 PF11791 Aconitate B N-terminal domain CJ12660_RS04125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJ12660_RS04125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJ12660_RS04135 PF00133 tRNA synthetases class I (I, L, M and V) CJ12660_RS04135 PF09334 tRNA synthetases class I (M) CJ12660_RS04135 PF01588 Putative tRNA binding domain CJ12660_RS04145 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CJ12660_RS04170 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJ12660_RS04175 PF00149 Calcineurin-like phosphoesterase CJ12660_RS04180 PF02666 Phosphatidylserine decarboxylase CJ12660_RS04185 PF01312 FlhB HrpN YscU SpaS Family CJ12660_RS04195 PF07690 Major Facilitator Superfamily CJ12660_RS04210 PF00202 Aminotransferase class-III CJ12660_RS04220 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CJ12660_RS04220 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CJ12660_RS04225 PF10502 Signal peptidase, peptidase S26 CJ12660_RS04230 PF03454 MoeA C-terminal region (domain IV) CJ12660_RS04230 PF00994 Probable molybdopterin binding domain CJ12660_RS04230 PF03453 MoeA N-terminal region (domain I and II) CJ12660_RS04235 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJ12660_RS04250 PF00591 Glycosyl transferase family, a/b domain CJ12660_RS04250 PF02885 Glycosyl transferase family, helical bundle domain CJ12660_RS04250 PF00117 Glutamine amidotransferase class-I CJ12660_RS04255 PF04715 Anthranilate synthase component I, N terminal region CJ12660_RS04255 PF00425 chorismate binding enzyme CJ12660_RS04260 PF00589 Phage integrase family CJ12660_RS04260 PF18644 Phage integrase SAM-like domain CJ12660_RS04270 PF02600 Disulfide bond formation protein DsbB CJ12660_RS04315 PF00771 FHIPEP family CJ12660_RS04320 PF02082 Transcriptional regulator CJ12660_RS04325 PF00312 Ribosomal protein S15 CJ12660_RS04330 PF17854 FtsK alpha domain CJ12660_RS04330 PF09397 Ftsk gamma domain CJ12660_RS04330 PF01580 FtsK/SpoIIIE family CJ12660_RS04335 PF00669 Bacterial flagellin N-terminal helical region CJ12660_RS04335 PF00700 Bacterial flagellin C-terminal helical region CJ12660_RS04350 PF12848 ABC transporter CJ12660_RS04350 PF00005 ABC transporter CJ12660_RS04350 PF16326 ABC transporter C-terminal domain CJ12660_RS04355 PF00512 His Kinase A (phospho-acceptor) domain CJ12660_RS04355 PF16736 Single Cache-like CJ12660_RS04355 PF00989 PAS fold CJ12660_RS04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12660_RS04360 PF00072 Response regulator receiver domain CJ12660_RS04360 PF00486 Transcriptional regulatory protein, C terminal CJ12660_RS04365 PF01842 ACT domain CJ12660_RS04365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJ12660_RS04365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJ12660_RS04375 PF00575 S1 RNA binding domain CJ12660_RS04380 PF02401 LytB protein CJ12660_RS04385 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJ12660_RS04390 PF03483 B3/4 domain CJ12660_RS04390 PF01588 Putative tRNA binding domain CJ12660_RS04390 PF03147 Ferredoxin-fold anticodon binding domain CJ12660_RS04390 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CJ12660_RS04390 PF03484 tRNA synthetase B5 domain CJ12660_RS04395 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CJ12660_RS04395 PF01409 tRNA synthetases class II core domain (F) CJ12660_RS04400 PF01230 HIT domain CJ12660_RS04415 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS04420 PF00005 ABC transporter CJ12660_RS04425 PF01235 Sodium:alanine symporter family CJ12660_RS04430 PF00588 SpoU rRNA Methylase family CJ12660_RS04435 PF00842 Alanine racemase, C-terminal domain CJ12660_RS04435 PF01168 Alanine racemase, N-terminal domain CJ12660_RS04460 PF02630 SCO1/SenC CJ12660_RS04465 PF00291 Pyridoxal-phosphate dependent enzyme CJ12660_RS04470 PF00216 Bacterial DNA-binding protein CJ12660_RS04480 PF03061 Thioesterase superfamily CJ12660_RS04490 PF13722 5TM C-terminal transporter carbon starvation CstA CJ12660_RS04490 PF02554 Carbon starvation protein CstA CJ12660_RS04495 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJ12660_RS04495 PF14572 Phosphoribosyl synthetase-associated domain CJ12660_RS04500 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS04505 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS04510 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ12660_RS04515 PF00005 ABC transporter CJ12660_RS04520 PF01739 CheR methyltransferase, SAM binding domain CJ12660_RS04525 PF01339 CheB methylesterase CJ12660_RS04525 PF00072 Response regulator receiver domain CJ12660_RS04530 PF02502 Ribose/Galactose Isomerase CJ12660_RS04540 PF00156 Phosphoribosyl transferase domain CJ12660_RS04550 PF00883 Cytosol aminopeptidase family, catalytic domain CJ12660_RS04555 PF06071 Protein of unknown function (DUF933) CJ12660_RS04555 PF01926 50S ribosome-binding GTPase CJ12660_RS04560 PF00206 Lyase CJ12660_RS04560 PF14698 Argininosuccinate lyase C-terminal CJ12660_RS04565 PF01293 Phosphoenolpyruvate carboxykinase CJ12660_RS04570 PF00364 Biotin-requiring enzyme CJ12660_RS04570 PF00682 HMGL-like CJ12660_RS04570 PF02436 Conserved carboxylase domain CJ12660_RS04575 PF00209 Sodium:neurotransmitter symporter family CJ12660_RS04580 PF00209 Sodium:neurotransmitter symporter family CJ12660_RS04585 PF00137 ATP synthase subunit C CJ12660_RS04625 PF01555 DNA methylase CJ12660_RS04860 PF00501 AMP-binding enzyme CJ12660_RS04860 PF01553 Acyltransferase CJ12660_RS04905 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS04915 PF07516 SecA Wing and Scaffold domain CJ12660_RS04915 PF02810 SEC-C motif CJ12660_RS04915 PF01043 SecA preprotein cross-linking domain CJ12660_RS04915 PF07517 SecA DEAD-like domain CJ12660_RS04920 PF03548 Outer membrane lipoprotein carrier protein LolA CJ12660_RS04930 PF05970 PIF1-like helicase CJ12660_RS04930 PF02689 Helicase CJ12660_RS04940 PF00795 Carbon-nitrogen hydrolase CJ12660_RS04945 PF16916 Dimerisation domain of Zinc Transporter CJ12660_RS04945 PF01545 Cation efflux family CJ12660_RS04950 PF04371 Porphyromonas-type peptidyl-arginine deiminase CJ12660_RS04960 PF00672 HAMP domain CJ12660_RS04960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12660_RS04965 PF02142 MGS-like domain CJ12660_RS04965 PF01808 AICARFT/IMPCHase bienzyme CJ12660_RS04970 PF00226 DnaJ domain CJ12660_RS04970 PF05099 Tellurite resistance protein TerB CJ12660_RS04975 PF02769 AIR synthase related protein, C-terminal domain CJ12660_RS04975 PF00586 AIR synthase related protein, N-terminal domain CJ12660_RS04975 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CJ12660_RS04980 PF12631 MnmE helical domain CJ12660_RS04980 PF01926 50S ribosome-binding GTPase CJ12660_RS04980 PF10396 GTP-binding protein TrmE N-terminus CJ12660_RS04990 PF02096 60Kd inner membrane protein CJ12660_RS04990 PF14849 YidC periplasmic domain CJ12660_RS04995 PF01809 Putative membrane protein insertion efficiency factor CJ12660_RS05000 PF00825 Ribonuclease P CJ12660_RS05005 PF00468 Ribosomal protein L34 CJ12660_RS05020 PF03061 Thioesterase superfamily CJ12660_RS05060 PF08003 Protein of unknown function (DUF1698) CJ12660_RS05075 PF00565 Staphylococcal nuclease homologue CJ12660_RS05080 PF07687 Peptidase dimerisation domain CJ12660_RS05080 PF01546 Peptidase family M20/M25/M40 CJ12660_RS05085 PF08946 Osmosensory transporter coiled coil CJ12660_RS05085 PF00083 Sugar (and other) transporter CJ12660_RS05090 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ12660_RS05095 PF16668 Adhesin from Campylobacter CJ12660_RS05100 PF03883 Peroxide stress protein YaaA CJ12660_RS05105 PF07687 Peptidase dimerisation domain CJ12660_RS05105 PF01546 Peptidase family M20/M25/M40 CJ12660_RS05110 PF07690 Major Facilitator Superfamily CJ12660_RS05130 PF17437 Family of unknown function (DUF5416) CJ12660_RS05135 PF02754 Cysteine-rich domain CJ12660_RS05135 PF02665 Nitrate reductase gamma subunit CJ12660_RS05135 PF13183 4Fe-4S dicluster domain CJ12660_RS05140 PF04055 Radical SAM superfamily CJ12660_RS05140 PF06969 HemN C-terminal domain CJ12660_RS05145 PF10788 Protein of unknown function (DUF2603) CJ12660_RS05150 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJ12660_RS05150 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJ12660_RS05155 PF00490 Delta-aminolevulinic acid dehydratase CJ12660_RS05160 PF00925 GTP cyclohydrolase II CJ12660_RS05165 PF02527 rRNA small subunit methyltransferase G CJ12660_RS05175 PF03601 Conserved hypothetical protein 698 CJ12660_RS05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ12660_RS05180 PF03466 LysR substrate binding domain CJ12660_RS05185 PF04545 Sigma-70, region 4 CJ12660_RS05185 PF00140 Sigma-70 factor, region 1.2 CJ12660_RS05185 PF04539 Sigma-70 region 3 CJ12660_RS05185 PF04542 Sigma-70 region 2 CJ12660_RS05205 PF00004 ATPase family associated with various cellular activities (AAA) CJ12660_RS05205 PF17862 AAA+ lid domain CJ12660_RS05205 PF06480 FtsH Extracellular CJ12660_RS05205 PF01434 Peptidase family M41 CJ12660_RS05210 PF04055 Radical SAM superfamily CJ12660_RS05210 PF00919 Uncharacterized protein family UPF0004 CJ12660_RS05220 PF01761 3-dehydroquinate synthase CJ12660_RS05230 PF01702 Queuine tRNA-ribosyltransferase CJ12660_RS05250 PF05140 ResB-like family CJ12660_RS05250 PF01578 Cytochrome C assembly protein CJ12660_RS05255 PF00005 ABC transporter CJ12660_RS05260 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ12660_RS05260 PF00005 ABC transporter CJ12660_RS05265 PF11862 Domain of unknown function (DUF3382) CJ12660_RS05265 PF02653 Branched-chain amino acid transport system / permease component CJ12660_RS05270 PF02653 Branched-chain amino acid transport system / permease component CJ12660_RS05275 PF13458 Periplasmic binding protein CJ12660_RS05280 PF13458 Periplasmic binding protein CJ12660_RS05300 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJ12660_RS05300 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJ12660_RS05305 PF00072 Response regulator receiver domain CJ12660_RS05305 PF00158 Sigma-54 interaction domain CJ12660_RS05320 PF03989 DNA gyrase C-terminal domain, beta-propeller CJ12660_RS05320 PF00521 DNA gyrase/topoisomerase IV, subunit A CJ12660_RS05335 PF06421 GTP-binding protein LepA C-terminus CJ12660_RS05335 PF00009 Elongation factor Tu GTP binding domain CJ12660_RS05335 PF00679 Elongation factor G C-terminus CJ12660_RS05335 PF03144 Elongation factor Tu domain 2 CJ12660_RS05345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ12660_RS05345 PF00529 HlyD membrane-fusion protein of T1SS CJ12660_RS05350 PF00873 AcrB/AcrD/AcrF family CJ12660_RS05360 PF04376 Arginine-tRNA-protein transferase, N terminus CJ12660_RS05360 PF04377 Arginine-tRNA-protein transferase, C terminus CJ12660_RS05370 PF02785 Biotin carboxylase C-terminal domain CJ12660_RS05370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ12660_RS05370 PF00289 Biotin carboxylase, N-terminal domain CJ12660_RS05375 PF01098 Cell cycle protein CJ12660_RS05380 PF03033 Glycosyltransferase family 28 N-terminal domain CJ12660_RS05380 PF04101 Glycosyltransferase family 28 C-terminal domain CJ12660_RS05395 PF12833 Helix-turn-helix domain CJ12660_RS05400 PF02581 Thiamine monophosphate synthase CJ12660_RS05405 PF06968 Biotin and Thiamin Synthesis associated domain CJ12660_RS05405 PF04055 Radical SAM superfamily CJ12660_RS05410 PF05690 Thiazole biosynthesis protein ThiG CJ12660_RS05415 PF00899 ThiF family CJ12660_RS05415 PF00581 Rhodanese-like domain CJ12660_RS05425 PF07687 Peptidase dimerisation domain CJ12660_RS05425 PF01546 Peptidase family M20/M25/M40 CJ12660_RS05435 PF02146 Sir2 family CJ12660_RS05445 PF01713 Smr domain CJ12660_RS05445 PF00488 MutS domain V CJ12660_RS05455 PF01225 Mur ligase family, catalytic domain CJ12660_RS05455 PF08245 Mur ligase middle domain CJ12660_RS05455 PF02875 Mur ligase family, glutamate ligase domain CJ12660_RS05475 PF00571 CBS domain CJ12660_RS05475 PF00478 IMP dehydrogenase / GMP reductase domain CJ12660_RS05480 PF01425 Amidase CJ12660_RS05490 PF08264 Anticodon-binding domain of tRNA CJ12660_RS05490 PF00133 tRNA synthetases class I (I, L, M and V) CJ12660_RS05495 PF00994 Probable molybdopterin binding domain CJ12660_RS05495 PF02464 Competence-damaged protein CJ12660_RS05500 PF00583 Acetyltransferase (GNAT) family CJ12660_RS05505 PF00881 Nitroreductase family CJ12660_RS05510 PF00881 Nitroreductase family CJ12660_RS05515 PF01066 CDP-alcohol phosphatidyltransferase CJ12660_RS05520 PF17820 PDZ domain CJ12660_RS05520 PF02163 Peptidase family M50 CJ12660_RS05525 PF04393 Protein of unknown function (DUF535) CJ12660_RS05530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJ12660_RS05530 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ12660_RS05540 PF01250 Ribosomal protein S6 CJ12660_RS05545 PF00436 Single-strand binding protein family CJ12660_RS05550 PF01084 Ribosomal protein S18 CJ12660_RS05555 PF00004 ATPase family associated with various cellular activities (AAA) CJ12660_RS05555 PF05362 Lon protease (S16) C-terminal proteolytic domain CJ12660_RS05555 PF02190 ATP-dependent protease La (LON) substrate-binding domain CJ12660_RS05565 PF02623 FliW protein CJ12660_RS05570 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJ12660_RS05570 PF03807 NADP oxidoreductase coenzyme F420-dependent CJ12660_RS05595 PF02581 Thiamine monophosphate synthase CJ12660_RS05600 PF08543 Phosphomethylpyrimidine kinase CJ12660_RS05615 PF03461 TRCF domain CJ12660_RS05615 PF00271 Helicase conserved C-terminal domain CJ12660_RS05615 PF00270 DEAD/DEAH box helicase CJ12660_RS05615 PF02559 CarD-like/TRCF domain CJ12660_RS05615 PF17757 UvrB interaction domain CJ12660_RS05625 PF01551 Peptidase family M23 CJ12660_RS05625 PF04225 Opacity-associated protein A LysM-like domain CJ12660_RS05630 PF02875 Mur ligase family, glutamate ligase domain CJ12660_RS05630 PF08245 Mur ligase middle domain CJ12660_RS05645 PF00133 tRNA synthetases class I (I, L, M and V) CJ12660_RS05645 PF13603 Leucyl-tRNA synthetase, Domain 2 CJ12660_RS05645 PF09334 tRNA synthetases class I (M) CJ12660_RS05650 PF02355 Protein export membrane protein CJ12660_RS05650 PF07549 SecD/SecF GG Motif CJ12660_RS05655 PF02355 Protein export membrane protein CJ12660_RS05660 PF02699 Preprotein translocase subunit CJ12660_RS05670 PF02773 S-adenosylmethionine synthetase, C-terminal domain CJ12660_RS05670 PF02772 S-adenosylmethionine synthetase, central domain CJ12660_RS05670 PF00438 S-adenosylmethionine synthetase, N-terminal domain CJ12660_RS05675 PF00375 Sodium:dicarboxylate symporter family CJ12660_RS05680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJ12660_RS05680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJ12660_RS05685 PF08439 Oligopeptidase F CJ12660_RS05685 PF01432 Peptidase family M3 CJ12660_RS05695 PF13361 UvrD-like helicase C-terminal domain CJ12660_RS05695 PF00580 UvrD/REP helicase N-terminal domain CJ12660_RS05700 PF01509 TruB family pseudouridylate synthase (N terminal domain) CJ12660_RS05705 PF02599 Global regulator protein family CJ12660_RS05710 PF00288 GHMP kinases N terminal domain CJ12660_RS05715 PF01668 SmpB protein CJ12660_RS05725 PF02617 ATP-dependent Clp protease adaptor protein ClpS CJ12660_RS05730 PF10431 C-terminal, D2-small domain, of ClpB protein CJ12660_RS05730 PF17871 AAA lid domain CJ12660_RS05730 PF07724 AAA domain (Cdc48 subfamily) CJ12660_RS05730 PF00004 ATPase family associated with various cellular activities (AAA) CJ12660_RS05730 PF02861 Clp amino terminal domain, pathogenicity island component CJ12660_RS05735 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CJ12660_RS05740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12660_RS05740 PF08447 PAS fold CJ12660_RS05740 PF13426 PAS domain CJ12660_RS05745 PF01914 MarC family integral membrane protein CJ12660_RS05750 PF01641 SelR domain CJ12660_RS05755 PF04305 Protein of unknown function (DUF455) CJ12660_RS05760 PF01066 CDP-alcohol phosphatidyltransferase CJ12660_RS05770 PF17862 AAA+ lid domain CJ12660_RS05770 PF01434 Peptidase family M41 CJ12660_RS05770 PF00004 ATPase family associated with various cellular activities (AAA) CJ12660_RS05780 PF00072 Response regulator receiver domain CJ12660_RS05790 PF02719 Polysaccharide biosynthesis protein CJ12660_RS05795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ12660_RS05805 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12660_RS05805 PF17836 PglD N-terminal domain CJ12660_RS05810 PF02397 Bacterial sugar transferase CJ12660_RS05815 PF13477 Glycosyl transferase 4-like CJ12660_RS05815 PF00534 Glycosyl transferases group 1 CJ12660_RS05820 PF18527 STT3/PglB C-terminal beta-barrel domain CJ12660_RS05820 PF02516 Oligosaccharyl transferase STT3 subunit CJ12660_RS05825 PF13439 Glycosyltransferase Family 4 CJ12660_RS05825 PF00534 Glycosyl transferases group 1 CJ12660_RS05830 PF00535 Glycosyl transferase family 2 CJ12660_RS05835 PF13439 Glycosyltransferase Family 4 CJ12660_RS05835 PF00534 Glycosyl transferases group 1 CJ12660_RS05840 PF00664 ABC transporter transmembrane region CJ12660_RS05840 PF00005 ABC transporter CJ12660_RS05845 PF16363 GDP-mannose 4,6 dehydratase CJ12660_RS05855 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJ12660_RS05860 PF03279 Bacterial lipid A biosynthesis acyltransferase CJ12660_RS05865 PF00535 Glycosyl transferase family 2 CJ12660_RS05870 PF00535 Glycosyl transferase family 2 CJ12660_RS05870 PF01501 Glycosyl transferase family 8 CJ12660_RS05880 PF00535 Glycosyl transferase family 2 CJ12660_RS05880 PF01501 Glycosyl transferase family 8 CJ12660_RS05890 PF06002 Alpha-2,3-sialyltransferase (CST-I) CJ12660_RS05895 PF03102 NeuB family CJ12660_RS05895 PF08666 SAF domain CJ12660_RS05900 PF02350 UDP-N-acetylglucosamine 2-epimerase CJ12660_RS05905 PF13472 GDSL-like Lipase/Acylhydrolase family CJ12660_RS05905 PF02348 Cytidylyltransferase CJ12660_RS05915 PF00535 Glycosyl transferase family 2 CJ12660_RS05925 PF13580 SIS domain CJ12660_RS05930 PF00294 pfkB family carbohydrate kinase CJ12660_RS05930 PF01467 Cytidylyltransferase-like CJ12660_RS05935 PF01370 NAD dependent epimerase/dehydratase family CJ12660_RS05940 PF08645 Polynucleotide kinase 3 phosphatase CJ12660_RS05955 PF00403 Heavy-metal-associated domain CJ12660_RS05960 PF07498 Rho termination factor, N-terminal domain CJ12660_RS05960 PF07497 Rho termination factor, RNA-binding domain CJ12660_RS05960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ12660_RS05965 PF12169 DNA polymerase III subunits gamma and tau domain III CJ12660_RS05965 PF12170 DNA polymerase III tau subunit V interacting with alpha CJ12660_RS05975 PF00403 Heavy-metal-associated domain CJ12660_RS05995 PF06738 Putative threonine/serine exporter CJ12660_RS05995 PF12821 Threonine/Serine exporter, ThrE CJ12660_RS06005 PF00056 lactate/malate dehydrogenase, NAD binding domain CJ12660_RS06005 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJ12660_RS06010 PF09335 SNARE associated Golgi protein CJ12660_RS06025 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJ12660_RS06030 PF01709 Transcriptional regulator CJ12660_RS06035 PF00893 Small Multidrug Resistance protein CJ12660_RS06040 PF00893 Small Multidrug Resistance protein CJ12660_RS06045 PF03485 Arginyl tRNA synthetase N terminal domain CJ12660_RS06045 PF05746 DALR anticodon binding domain CJ12660_RS06045 PF00750 tRNA synthetases class I (R) CJ12660_RS06050 PF02416 mttA/Hcf106 family CJ12660_RS06055 PF00625 Guanylate kinase CJ12660_RS06065 PF01311 Bacterial export proteins, family 1 CJ12660_RS06070 PF00005 ABC transporter CJ12660_RS06075 PF00889 Elongation factor TS CJ12660_RS06080 PF00318 Ribosomal protein S2 CJ12660_RS06095 PF00033 Cytochrome b/b6/petB CJ12660_RS06095 PF00032 Cytochrome b(C-terminal)/b6/petD CJ12660_RS06100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CJ12660_RS06100 PF00355 Rieske [2Fe-2S] domain CJ12660_RS06105 PF02040 Arsenical pump membrane protein CJ12660_RS06110 PF01134 Glucose inhibited division protein A CJ12660_RS06110 PF13932 GidA associated domain CJ12660_RS06120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12660_RS06120 PF08447 PAS fold CJ12660_RS06120 PF13426 PAS domain CJ12660_RS06130 PF00375 Sodium:dicarboxylate symporter family CJ12660_RS06140 PF01384 Phosphate transporter family CJ12660_RS06145 PF01979 Amidohydrolase family CJ12660_RS06150 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJ12660_RS06150 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJ12660_RS06155 PF02934 GatB/GatE catalytic domain CJ12660_RS06155 PF02637 GatB domain CJ12660_RS06160 PF02664 S-Ribosylhomocysteinase (LuxS) CJ12660_RS06165 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CJ12660_RS06165 PF03171 2OG-Fe(II) oxygenase superfamily CJ12660_RS06170 PF03180 NLPA lipoprotein CJ12660_RS06175 PF08267 Cobalamin-independent synthase, N-terminal domain CJ12660_RS06175 PF01717 Cobalamin-independent synthase, Catalytic domain CJ12660_RS06180 PF02219 Methylenetetrahydrofolate reductase CJ12660_RS06190 PF00119 ATP synthase A chain CJ12660_RS06195 PF18073 Rubredoxin metal binding domain CJ12660_RS06200 PF00448 SRP54-type protein, GTPase domain CJ12660_RS06215 PF01966 HD domain CJ12660_RS06215 PF12072 Domain of unknown function (DUF3552) CJ12660_RS06230 PF03631 Virulence factor BrkB CJ12660_RS06235 PF02913 FAD linked oxidases, C-terminal domain CJ12660_RS06235 PF01565 FAD binding domain CJ12660_RS06245 PF01476 LysM domain CJ12660_RS06245 PF01551 Peptidase family M23 CJ12660_RS06245 PF08525 Opacity-associated protein A N-terminal motif CJ12660_RS06255 PF02578 Multi-copper polyphenol oxidoreductase laccase CJ12660_RS06260 PF00677 Lumazine binding domain CJ12660_RS06270 PF00166 Chaperonin 10 Kd subunit CJ12660_RS06275 PF00118 TCP-1/cpn60 chaperonin family CJ12660_RS06280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12660_RS06285 PF00072 Response regulator receiver domain CJ12660_RS06285 PF00486 Transcriptional regulatory protein, C terminal CJ12660_RS06310 PF00486 Transcriptional regulatory protein, C terminal CJ12660_RS06310 PF00072 Response regulator receiver domain CJ12660_RS06315 PF00595 PDZ domain CJ12660_RS06320 PF01556 DnaJ C terminal domain CJ12660_RS06320 PF00226 DnaJ domain CJ12660_RS06325 PF13411 MerR HTH family regulatory protein CJ12660_RS06330 PF02254 TrkA-N domain CJ12660_RS06330 PF00999 Sodium/hydrogen exchanger family CJ12660_RS06340 PF13419 Haloacid dehalogenase-like hydrolase CJ12660_RS06345 PF02092 Glycyl-tRNA synthetase beta subunit CJ12660_RS06350 PF01551 Peptidase family M23 CJ12660_RS06360 PF02541 Ppx/GppA phosphatase family CJ12660_RS06365 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CJ12660_RS06370 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CJ12660_RS06380 PF07690 Major Facilitator Superfamily CJ12660_RS06390 PF01208 Uroporphyrinogen decarboxylase (URO-D) CJ12660_RS06395 PF04055 Radical SAM superfamily CJ12660_RS06405 PF02151 UvrB/uvrC motif CJ12660_RS06405 PF08459 UvrC Helix-hairpin-helix N-terminal CJ12660_RS06405 PF01541 GIY-YIG catalytic domain CJ12660_RS06415 PF00958 GMP synthase C terminal domain CJ12660_RS06415 PF00117 Glutamine amidotransferase class-I CJ12660_RS06415 PF02540 NAD synthase CJ12660_RS06425 PF02843 Phosphoribosylglycinamide synthetase, C domain CJ12660_RS06425 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CJ12660_RS06425 PF02844 Phosphoribosylglycinamide synthetase, N domain CJ12660_RS06440 PF03725 3' exoribonuclease family, domain 2 CJ12660_RS06440 PF01138 3' exoribonuclease family, domain 1 CJ12660_RS06440 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CJ12660_RS06440 PF00013 KH domain CJ12660_RS06440 PF00575 S1 RNA binding domain CJ12660_RS06455 PF07690 Major Facilitator Superfamily CJ12660_RS06460 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJ12660_RS06465 PF05538 Campylobacter major outer membrane protein CJ12660_RS06470 PF00226 DnaJ domain CJ12660_RS06470 PF00684 DnaJ central domain CJ12660_RS06470 PF01556 DnaJ C terminal domain CJ12660_RS06475 PF00486 Transcriptional regulatory protein, C terminal CJ12660_RS06475 PF00072 Response regulator receiver domain CJ12660_RS06485 PF13662 Toprim domain CJ12660_RS06485 PF02132 RecR protein CJ12660_RS06490 PF01750 Hydrogenase maturation protease CJ12660_RS06495 PF01292 Prokaryotic cytochrome b561 CJ12660_RS06500 PF00374 Nickel-dependent hydrogenase CJ12660_RS06505 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJ12660_RS06505 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ12660_RS06505 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJ12660_RS06510 PF01266 FAD dependent oxidoreductase CJ12660_RS06510 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CJ12660_RS06515 PF01520 N-acetylmuramoyl-L-alanine amidase CJ12660_RS06515 PF11741 AMIN domain CJ12660_RS06525 PF00579 tRNA synthetases class I (W and Y) CJ12660_RS06530 PF13291 ACT domain CJ12660_RS06530 PF02824 TGS domain CJ12660_RS06530 PF04607 Region found in RelA / SpoT proteins CJ12660_RS06535 PF01192 RNA polymerase Rpb6 CJ12660_RS06540 PF00696 Amino acid kinase family CJ12660_RS06555 PF09383 NIL domain CJ12660_RS06555 PF00005 ABC transporter CJ12660_RS06560 PF02390 Putative methyltransferase CJ12660_RS06570 PF00849 RNA pseudouridylate synthase CJ12660_RS06570 PF01479 S4 domain CJ12660_RS06575 PF01098 Cell cycle protein CJ12660_RS06590 PF02386 Cation transport protein CJ12660_RS06595 PF02254 TrkA-N domain CJ12660_RS06595 PF02080 TrkA-C domain CJ12660_RS06600 PF02621 Menaquinone biosynthesis CJ12660_RS06610 PF03949 Malic enzyme, NAD binding domain CJ12660_RS06610 PF00390 Malic enzyme, N-terminal domain CJ12660_RS06610 PF01515 Phosphate acetyl/butaryl transferase CJ12660_RS06615 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJ12660_RS06625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ12660_RS06625 PF00289 Biotin carboxylase, N-terminal domain CJ12660_RS06625 PF02785 Biotin carboxylase C-terminal domain CJ12660_RS06630 PF00364 Biotin-requiring enzyme CJ12660_RS06635 PF00692 dUTPase CJ12660_RS06640 PF02719 Polysaccharide biosynthesis protein CJ12660_RS06645 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ12660_RS06650 PF16221 winged helix-turn-helix CJ12660_RS06650 PF09940 Domain of unknown function (DUF2172) CJ12660_RS06650 PF16254 Domain of unknown function (DUF4910) CJ12660_RS06685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJ12660_RS06685 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJ12660_RS06705 PF13193 AMP-binding enzyme C-terminal domain CJ12660_RS06705 PF00501 AMP-binding enzyme CJ12660_RS06705 PF00550 Phosphopantetheine attachment site CJ12660_RS06705 PF00668 Condensation domain CJ12660_RS06725 PF02348 Cytidylyltransferase CJ12660_RS06735 PF13302 Acetyltransferase (GNAT) domain CJ12660_RS06740 PF00977 Histidine biosynthesis protein CJ12660_RS06745 PF00117 Glutamine amidotransferase class-I CJ12660_RS06755 PF03102 NeuB family CJ12660_RS06755 PF08666 SAF domain CJ12660_RS06765 PF16363 GDP-mannose 4,6 dehydratase CJ12660_RS06770 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ12660_RS06795 PF03102 NeuB family CJ12660_RS06795 PF08666 SAF domain CJ12660_RS06800 PF02350 UDP-N-acetylglucosamine 2-epimerase CJ12660_RS06805 PF00483 Nucleotidyl transferase CJ12660_RS06815 PF02348 Cytidylyltransferase CJ12660_RS06850 PF00669 Bacterial flagellin N-terminal helical region CJ12660_RS06850 PF07196 Flagellin hook IN motif CJ12660_RS06850 PF00700 Bacterial flagellin C-terminal helical region CJ12660_RS06855 PF00669 Bacterial flagellin N-terminal helical region CJ12660_RS06855 PF00700 Bacterial flagellin C-terminal helical region CJ12660_RS06855 PF07196 Flagellin hook IN motif CJ12660_RS06875 PF08334 Type II secretion system (T2SS), protein G CJ12660_RS06875 PF07963 Prokaryotic N-terminal methylation motif CJ12660_RS06880 PF00814 Glycoprotease family CJ12660_RS06890 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJ12660_RS06890 PF13288 DXP reductoisomerase C-terminal domain CJ12660_RS06890 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CJ12660_RS06905 PF05670 NFACT protein RNA binding domain CJ12660_RS06910 PF12804 MobA-like NTP transferase domain CJ12660_RS06915 PF02253 Phospholipase A1 CJ12660_RS06920 PF01032 FecCD transport family CJ12660_RS06925 PF01032 FecCD transport family CJ12660_RS06930 PF00005 ABC transporter CJ12660_RS06935 PF01497 Periplasmic binding protein CJ12660_RS06950 PF02335 Cytochrome c552 CJ12660_RS06955 PF03264 NapC/NirT cytochrome c family, N-terminal region CJ12660_RS06960 PF02503 Polyphosphate kinase middle domain CJ12660_RS06960 PF17941 Polyphosphate kinase C-terminal domain 1 CJ12660_RS06960 PF13089 Polyphosphate kinase N-terminal domain CJ12660_RS06960 PF13090 Polyphosphate kinase C-terminal domain 2 CJ12660_RS06975 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJ12660_RS06975 PF05491 RuvB C-terminal winged helix domain CJ12660_RS06975 PF17864 RuvB AAA lid domain CJ12660_RS06980 PF01594 AI-2E family transporter CJ12660_RS06985 PF10415 Fumarase C C-terminus CJ12660_RS06985 PF00206 Lyase CJ12660_RS06990 PF00082 Subtilase family CJ12660_RS06990 PF12951 Passenger-associated-transport-repeat CJ12660_RS06990 PF03797 Autotransporter beta-domain CJ12660_RS06995 PF01380 SIS domain CJ12660_RS07005 PF04055 Radical SAM superfamily CJ12660_RS07010 PF00860 Permease family CJ12660_RS07015 PF00156 Phosphoribosyl transferase domain CJ12660_RS07020 PF04333 MlaA lipoprotein CJ12660_RS07035 PF01725 Ham1 family CJ12660_RS07040 PF07690 Major Facilitator Superfamily CJ12660_RS07055 PF03841 L-seryl-tRNA selenium transferase CJ12660_RS07060 PF09106 Elongation factor SelB, winged helix CJ12660_RS07060 PF09107 Elongation factor SelB, winged helix CJ12660_RS07060 PF03144 Elongation factor Tu domain 2 CJ12660_RS07060 PF00009 Elongation factor Tu GTP binding domain CJ12660_RS07065 PF13098 Thioredoxin-like domain CJ12660_RS07075 PF00258 Flavodoxin CJ12660_RS07090 PF00199 Catalase CJ12660_RS07090 PF06628 Catalase-related immune-responsive CJ12660_RS07100 PF08348 YheO-like PAS domain CJ12660_RS07100 PF13309 HTH domain CJ12660_RS07105 PF01042 Endoribonuclease L-PSP CJ12660_RS07120 PF10397 Adenylosuccinate lyase C-terminus CJ12660_RS07120 PF00206 Lyase CJ12660_RS07130 PF04023 FeoA domain CJ12660_RS07135 PF07670 Nucleoside recognition CJ12660_RS07135 PF07664 Ferrous iron transport protein B C terminus CJ12660_RS07135 PF02421 Ferrous iron transport protein B CJ12660_RS07140 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ12660_RS07140 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJ12660_RS07140 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJ12660_RS07150 PF00121 Triosephosphate isomerase CJ12660_RS07155 PF00162 Phosphoglycerate kinase CJ12660_RS07160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJ12660_RS07160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJ12660_RS07165 PF01467 Cytidylyltransferase-like CJ12660_RS07180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJ12660_RS07180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJ12660_RS07180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJ12660_RS07180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJ12660_RS07185 PF03748 Flagellar basal body-associated protein FliL CJ12660_RS07190 PF01648 4'-phosphopantetheinyl transferase superfamily CJ12660_RS07200 PF00067 Cytochrome P450 CJ12660_RS07210 PF05159 Capsule polysaccharide biosynthesis protein CJ12660_RS07215 PF05159 Capsule polysaccharide biosynthesis protein CJ12660_RS07225 PF00483 Nucleotidyl transferase CJ12660_RS07230 PF00117 Glutamine amidotransferase class-I CJ12660_RS07235 PF00391 PEP-utilising enzyme, mobile domain CJ12660_RS07235 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CJ12660_RS07240 PF01209 ubiE/COQ5 methyltransferase family CJ12660_RS07260 PF00483 Nucleotidyl transferase CJ12660_RS07265 PF13580 SIS domain CJ12660_RS07270 PF00288 GHMP kinases N terminal domain CJ12660_RS07270 PF08544 GHMP kinases C terminal CJ12660_RS07280 PF01370 NAD dependent epimerase/dehydratase family CJ12660_RS07285 PF01370 NAD dependent epimerase/dehydratase family CJ12660_RS07295 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CJ12660_RS07315 PF00535 Glycosyl transferase family 2 CJ12660_RS07325 PF00155 Aminotransferase class I and II CJ12660_RS07330 PF00155 Aminotransferase class I and II CJ12660_RS07335 PF00535 Glycosyl transferase family 2 CJ12660_RS07340 PF03275 UDP-galactopyranose mutase CJ12660_RS07345 PF01501 Glycosyl transferase family 8 CJ12660_RS07345 PF00535 Glycosyl transferase family 2 CJ12660_RS07350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJ12660_RS07350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJ12660_RS07360 PF01380 SIS domain CJ12660_RS07360 PF00571 CBS domain CJ12660_RS07365 PF10531 SLBB domain CJ12660_RS07365 PF02563 Polysaccharide biosynthesis/export protein CJ12660_RS07375 PF00005 ABC transporter CJ12660_RS07380 PF01061 ABC-2 type transporter CJ12660_RS07405 PF01171 PP-loop family CJ12660_RS07410 PF00919 Uncharacterized protein family UPF0004 CJ12660_RS07410 PF04055 Radical SAM superfamily CJ12660_RS07415 PF00472 RF-1 domain CJ12660_RS07415 PF03462 PCRF domain CJ12660_RS07425 PF01142 tRNA pseudouridine synthase D (TruD) CJ12660_RS07430 PF02769 AIR synthase related protein, C-terminal domain CJ12660_RS07430 PF00586 AIR synthase related protein, N-terminal domain CJ12660_RS07450 PF02119 Flagellar P-ring protein CJ12660_RS07470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12660_RS07470 PF07196 Flagellin hook IN motif CJ12660_RS07480 PF01925 Sulfite exporter TauE/SafE CJ12660_RS07485 PF00482 Type II secretion system (T2SS), protein F CJ12660_RS07490 PF00437 Type II/IV secretion system protein CJ12660_RS07505 PF07655 Secretin N-terminal domain CJ12660_RS07505 PF00263 Bacterial type II and III secretion system protein CJ12660_RS07515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ12660_RS07515 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CJ12660_RS07515 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CJ12660_RS07515 PF10371 Domain of unknown function CJ12660_RS07515 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CJ12660_RS07520 PF13419 Haloacid dehalogenase-like hydrolase CJ12660_RS07525 PF05736 OprF membrane domain CJ12660_RS07525 PF00691 OmpA family CJ12660_RS07530 PF00380 Ribosomal protein S9/S16 CJ12660_RS07535 PF00572 Ribosomal protein L13 CJ12660_RS07540 PF00580 UvrD/REP helicase N-terminal domain CJ12660_RS07540 PF13361 UvrD-like helicase C-terminal domain CJ12660_RS07545 PF12705 PD-(D/E)XK nuclease superfamily CJ12660_RS07570 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ12660_RS07570 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CJ12660_RS07585 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJ12660_RS07590 PF00072 Response regulator receiver domain CJ12660_RS07590 PF00486 Transcriptional regulatory protein, C terminal CJ12660_RS07595 PF08447 PAS fold CJ12660_RS07595 PF08448 PAS fold CJ12660_RS07595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12660_RS07605 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJ12660_RS07605 PF00117 Glutamine amidotransferase class-I CJ12660_RS07625 PF00709 Adenylosuccinate synthetase CJ12660_RS07635 PF04143 Sulphur transport CJ12660_RS07640 PF01206 Sulfurtransferase TusA CJ12660_RS07645 PF00474 Sodium:solute symporter family CJ12660_RS07650 PF00171 Aldehyde dehydrogenase family CJ12660_RS07650 PF01619 Proline dehydrogenase CJ12660_RS07650 PF14850 DNA-binding domain of Proline dehydrogenase CJ12660_RS07650 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CJ12660_RS07665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12660_RS07665 PF08447 PAS fold CJ12660_RS07665 PF13426 PAS domain CJ12660_RS07675 PF02634 FdhD/NarQ family CJ12660_RS07685 PF13247 4Fe-4S dicluster domain CJ12660_RS07705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJ12660_RS07710 PF07732 Multicopper oxidase CJ12660_RS07710 PF07731 Multicopper oxidase CJ12660_RS07720 PF02391 MoaE protein CJ12660_RS07725 PF03453 MoeA N-terminal region (domain I and II) CJ12660_RS07725 PF03454 MoeA C-terminal region (domain IV) CJ12660_RS07725 PF00994 Probable molybdopterin binding domain CJ12660_RS07730 PF09827 CRISPR associated protein Cas2 CJ12660_RS07735 PF01867 CRISPR associated protein Cas1 CJ12660_RS07740 PF13395 HNH endonuclease CJ12660_RS07740 PF18541 RuvC endonuclease subdomain 3 CJ12660_RS07755 PF02769 AIR synthase related protein, C-terminal domain CJ12660_RS07755 PF00586 AIR synthase related protein, N-terminal domain CJ12660_RS07760 PF01121 Dephospho-CoA kinase CJ12660_RS07765 PF01678 Diaminopimelate epimerase CJ12660_RS07770 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJ12660_RS07780 PF00210 Ferritin-like domain CJ12660_RS07785 PF00342 Phosphoglucose isomerase CJ12660_RS07790 PF00483 Nucleotidyl transferase CJ12660_RS07795 PF00501 AMP-binding enzyme CJ12660_RS07795 PF16177 Acetyl-coenzyme A synthetase N-terminus CJ12660_RS07795 PF13193 AMP-binding enzyme C-terminal domain CJ12660_RS07800 PF00005 ABC transporter CJ12660_RS07805 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS07810 PF12849 PBP superfamily domain CJ12660_RS07815 PF03746 LamB/YcsF family CJ12660_RS07820 PF02682 Carboxyltransferase domain, subdomain C and D CJ12660_RS07825 PF02626 Carboxyltransferase domain, subdomain A and B CJ12660_RS07835 PF02525 Flavodoxin-like fold CJ12660_RS07840 PF01638 HxlR-like helix-turn-helix CJ12660_RS07850 PF00107 Zinc-binding dehydrogenase CJ12660_RS07850 PF08240 Alcohol dehydrogenase GroES-like domain CJ12660_RS07855 PF18766 SWI2/SNF2 ATPase CJ12660_RS07855 PF11867 Domain of unknown function (DUF3387) CJ12660_RS07855 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CJ12660_RS07875 PF02384 N-6 DNA Methylase CJ12660_RS07885 PF13460 NAD(P)H-binding CJ12660_RS07890 PF01638 HxlR-like helix-turn-helix CJ12660_RS07910 PF00672 HAMP domain CJ12660_RS07910 PF02743 Cache domain CJ12660_RS07910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12660_RS07920 PF00361 Proton-conducting membrane transporter CJ12660_RS07925 PF00361 Proton-conducting membrane transporter CJ12660_RS07930 PF00361 Proton-conducting membrane transporter CJ12660_RS07930 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CJ12660_RS07935 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CJ12660_RS07940 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CJ12660_RS07945 PF12838 4Fe-4S dicluster domain CJ12660_RS07950 PF00146 NADH dehydrogenase CJ12660_RS07955 PF01568 Molydopterin dinucleotide binding domain CJ12660_RS07955 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJ12660_RS07955 PF12838 4Fe-4S dicluster domain CJ12660_RS07955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ12660_RS07955 PF00384 Molybdopterin oxidoreductase CJ12660_RS07970 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CJ12660_RS07975 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CJ12660_RS07980 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ12660_RS07985 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CJ12660_RS07990 PF00005 ABC transporter CJ12660_RS07995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJ12660_RS07995 PF00005 ABC transporter CJ12660_RS08000 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS08000 PF12911 N-terminal TM domain of oligopeptide transport permease C CJ12660_RS08005 PF00528 Binding-protein-dependent transport system inner membrane component CJ12660_RS08010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJ12660_RS08015 PF01565 FAD binding domain CJ12660_RS08015 PF02913 FAD linked oxidases, C-terminal domain CJ12660_RS08020 PF00970 Oxidoreductase FAD-binding domain CJ12660_RS08020 PF00042 Globin CJ12660_RS08020 PF00175 Oxidoreductase NAD-binding domain CJ12660_RS08025 PF00005 ABC transporter CJ12660_RS08030 PF07690 Major Facilitator Superfamily CJ12660_RS08040 PF01176 Translation initiation factor 1A / IF-1 CJ12660_RS08045 PF00444 Ribosomal protein L36 CJ12660_RS08050 PF00416 Ribosomal protein S13/S18 CJ12660_RS08055 PF00411 Ribosomal protein S11 CJ12660_RS08060 PF00163 Ribosomal protein S4/S9 N-terminal domain CJ12660_RS08060 PF01479 S4 domain CJ12660_RS08065 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CJ12660_RS08065 PF01000 RNA polymerase Rpb3/RpoA insert domain CJ12660_RS08065 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CJ12660_RS08070 PF01196 Ribosomal protein L17 CJ12660_RS08075 PF01634 ATP phosphoribosyltransferase CJ12660_RS08075 PF08029 HisG, C-terminal domain CJ12660_RS08080 PF00815 Histidinol dehydrogenase CJ12660_RS08085 PF00475 Imidazoleglycerol-phosphate dehydratase CJ12660_RS08085 PF08645 Polynucleotide kinase 3 phosphatase CJ12660_RS08090 PF00117 Glutamine amidotransferase class-I CJ12660_RS08095 PF00977 Histidine biosynthesis protein CJ12660_RS08105 PF00977 Histidine biosynthesis protein CJ12660_RS08110 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CJ12660_RS08110 PF01502 Phosphoribosyl-AMP cyclohydrolase CJ12660_RS08115 PF14602 Hexapeptide repeat of succinyl-transferase CJ12660_RS08115 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CJ12660_RS08120 PF01883 Iron-sulfur cluster assembly protein CJ12660_RS08120 PF10609 NUBPL iron-transfer P-loop NTPase CJ12660_RS08125 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJ12660_RS08125 PF02542 YgbB family CJ12660_RS08135 PF14306 PUA-like domain CJ12660_RS08135 PF01747 ATP-sulfurylase CJ12660_RS08140 PF04608 Phosphatidylglycerophosphatase A CJ12660_RS08145 PF01649 Ribosomal protein S20 CJ12660_RS08150 PF00472 RF-1 domain CJ12660_RS08150 PF03462 PCRF domain CJ12660_RS08155 PF10615 Protein of unknown function (DUF2470) CJ12660_RS08155 PF01243 Pyridoxamine 5'-phosphate oxidase CJ12660_RS08160 PF07715 TonB-dependent Receptor Plug Domain CJ12660_RS08160 PF00593 TonB dependent receptor CJ12660_RS08165 PF01032 FecCD transport family CJ12660_RS08170 PF00005 ABC transporter CJ12660_RS08175 PF01497 Periplasmic binding protein CJ12660_RS08185 PF00083 Sugar (and other) transporter CJ12660_RS08190 PF14815 NUDIX domain CJ12660_RS08190 PF00730 HhH-GPD superfamily base excision DNA repair protein CJ12660_RS08220 PF01872 RibD C-terminal domain CJ12660_RS08220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJ12660_RS08230 PF03313 Serine dehydratase alpha chain CJ12660_RS08230 PF03315 Serine dehydratase beta chain CJ12660_RS08250 PF01618 MotA/TolQ/ExbB proton channel family CJ12660_RS08255 PF02472 Biopolymer transport protein ExbD/TolR CJ12660_RS08280 PF01264 Chorismate synthase CJ12660_RS08285 PF00035 Double-stranded RNA binding motif CJ12660_RS08285 PF14622 Ribonuclease-III-like CJ12660_RS08290 PF00075 RNase H CJ12660_RS08300 PF01807 CHC2 zinc finger CJ12660_RS08300 PF08275 DNA primase catalytic core, N-terminal domain CJ12660_RS08315 PF02875 Mur ligase family, glutamate ligase domain CJ12660_RS08315 PF08245 Mur ligase middle domain CJ12660_RS08320 PF02575 YbaB/EbfC DNA-binding family CJ12660_RS08330 PF00348 Polyprenyl synthetase CJ12660_RS08335 PF02780 Transketolase, C-terminal domain CJ12660_RS08335 PF00456 Transketolase, thiamine diphosphate binding domain CJ12660_RS08335 PF02779 Transketolase, pyrimidine binding domain CJ12660_RS08340 PF02405 Permease MlaE CJ12660_RS08345 PF00005 ABC transporter CJ12660_RS08355 PF02470 MlaD protein CJ12660_RS08355 PF03886 ABC-type transport auxiliary lipoprotein component CJ12660_RS08365 PF00557 Metallopeptidase family M24 CJ12660_RS08370 PF01177 Asp/Glu/Hydantoin racemase CJ12660_RS08375 PF00877 NlpC/P60 family CJ12660_RS08380 PF06965 Na+/H+ antiporter 1 CJ12660_RS08385 PF06965 Na+/H+ antiporter 1 CJ12660_RS08400 PF03239 Iron permease FTR1 family CJ12660_RS08405 PF10634 Fe2+ transport protein CJ12660_RS08425 PF00005 ABC transporter CJ12660_RS08475 PF14743 DNA ligase OB-like domain CJ12660_RS08475 PF01068 ATP dependent DNA ligase domain CJ12660_RS08490 PF00113 Enolase, C-terminal TIM barrel domain CJ12660_RS08490 PF03952 Enolase, N-terminal domain CJ12660_RS08495 PF00154 recA bacterial DNA recombination protein CJ12660_RS08500 PF02621 Menaquinone biosynthesis CJ12660_RS08505 PF01313 Bacterial export proteins, family 3 CJ12660_RS08510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CJ12660_RS08530 PF00459 Inositol monophosphatase family CJ12660_RS08535 PF00285 Citrate synthase, C-terminal domain CJ12660_RS08545 PF04055 Radical SAM superfamily CJ12660_RS08545 PF06968 Biotin and Thiamin Synthesis associated domain CJ12660_RS08550 PF01131 DNA topoisomerase CJ12660_RS08550 PF01396 Topoisomerase DNA binding C4 zinc finger CJ12660_RS08550 PF01751 Toprim domain CJ12660_RS08560 PF00344 SecY translocase CJ12660_RS08565 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CJ12660_RS08570 PF00333 Ribosomal protein S5, N-terminal domain CJ12660_RS08570 PF03719 Ribosomal protein S5, C-terminal domain CJ12660_RS08575 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CJ12660_RS08580 PF00347 Ribosomal protein L6 CJ12660_RS08585 PF00410 Ribosomal protein S8 CJ12660_RS08590 PF00253 Ribosomal protein S14p/S29e CJ12660_RS08595 PF00673 ribosomal L5P family C-terminus CJ12660_RS08595 PF00281 Ribosomal protein L5 CJ12660_RS08600 PF00467 KOW motif CJ12660_RS08600 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CJ12660_RS08605 PF00238 Ribosomal protein L14p/L23e CJ12660_RS08610 PF00366 Ribosomal protein S17 CJ12660_RS08615 PF00831 Ribosomal L29 protein CJ12660_RS08620 PF00252 Ribosomal protein L16p/L10e CJ12660_RS08625 PF07650 KH domain CJ12660_RS08625 PF00189 Ribosomal protein S3, C-terminal domain CJ12660_RS08630 PF00237 Ribosomal protein L22p/L17e CJ12660_RS08635 PF00203 Ribosomal protein S19 CJ12660_RS08640 PF00181 Ribosomal Proteins L2, RNA binding domain CJ12660_RS08640 PF03947 Ribosomal Proteins L2, C-terminal domain CJ12660_RS08645 PF00276 Ribosomal protein L23 CJ12660_RS08650 PF00573 Ribosomal protein L4/L1 family CJ12660_RS08655 PF00297 Ribosomal protein L3 CJ12660_RS08660 PF00338 Ribosomal protein S10p/S20e CJ12660_RS08665 PF00849 RNA pseudouridylate synthase CJ12660_RS08665 PF01479 S4 domain CJ12660_RS08670 PF17770 Ribonuclease J C-terminal domain CJ12660_RS08670 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJ12660_RS08670 PF00753 Metallo-beta-lactamase superfamily CJ12660_RS08675 PF00398 Ribosomal RNA adenine dimethylase CJ12660_RS08685 PF04055 Radical SAM superfamily CJ12660_RS08720 PF00694 Aconitase C-terminal domain CJ12660_RS08725 PF00330 Aconitase family (aconitate hydratase) CJ12660_RS08730 PF00180 Isocitrate/isopropylmalate dehydrogenase CJ12660_RS08735 PF08502 LeuA allosteric (dimerisation) domain CJ12660_RS08735 PF00682 HMGL-like CJ12660_RS08755 PF14489 QueF-like protein CJ12660_RS08765 PF04204 Homoserine O-succinyltransferase CJ12660_RS08770 PF01053 Cys/Met metabolism PLP-dependent enzyme CJ12660_RS08775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12660_RS08775 PF07196 Flagellin hook IN motif CJ12660_RS08775 PF07559 Flagellar basal body protein FlaE CJ12660_RS08775 PF00460 Flagella basal body rod protein CJ12660_RS08780 PF02075 Crossover junction endodeoxyribonuclease RuvC