locus-tag	class	description
CJ12660_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CJ12660_RS00010	COG0592	DNA-directed DNA polymerase activity
CJ12660_RS00015	COG0187	DNA topoisomerase II activity
CJ12660_RS00030	COG2056	Na+-H+ antiporter family
CJ12660_RS00035	COG0067	glutamate synthase
CJ12660_RS00035	COG0070	glutamate synthase
CJ12660_RS00035	COG0069	glutamate synthase activity
CJ12660_RS00045	COG0493	'glutamate synthase
CJ12660_RS00050	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CJ12660_RS00060	COG1592	Rubrerythrin
CJ12660_RS00065	COG0129	dihydroxy-acid dehydratase activity
CJ12660_RS00070	COG3477	response to acidic pH
CJ12660_RS00080	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CJ12660_RS00100	COG1858	cytochrome C peroxidase
CJ12660_RS00105	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJ12660_RS00110	COG0564	pseudouridine synthase activity
CJ12660_RS00115	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CJ12660_RS00120	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CJ12660_RS00125	COG1823	symporter activity
CJ12660_RS00135	COG0504	CTP synthase activity
CJ12660_RS00145	COG0252	asparaginase activity
CJ12660_RS00195	COG2814	Major facilitator Superfamily
CJ12660_RS00215	COG1217	gtp-binding protein TYPA
CJ12660_RS00230	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CJ12660_RS00260	COG0471	metal ion transport
CJ12660_RS00280	COG0471	metal ion transport
CJ12660_RS00315	COG1776	CheC inhibitor of MCP methylation
CJ12660_RS00315	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJ12660_RS00320	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJ12660_RS00325	COG1191	sigma factor activity
CJ12660_RS00335	COG0455	bacterial-type flagellum organization
CJ12660_RS00340	COG1419	protein localization to endoplasmic reticulum
CJ12660_RS00345	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CJ12660_RS00350	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CJ12660_RS00355	COG0402	S-adenosylhomocysteine deaminase activity
CJ12660_RS00360	COG0616	signal peptide processing
CJ12660_RS00380	COG1139	Iron-sulfur cluster binding protein
CJ12660_RS00385	COG0247	lactate metabolic process
CJ12660_RS00400	COG3021	interspecies interaction between organisms
CJ12660_RS00415	COG1271	oxidase subunit
CJ12660_RS00420	COG1294	oxidase, subunit
CJ12660_RS00425	COG1794	racemase activity, acting on amino acids and derivatives
CJ12660_RS00430	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CJ12660_RS00435	COG1027	Aspartate ammonia-lyase
CJ12660_RS00440	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CJ12660_RS00470	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CJ12660_RS00475	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CJ12660_RS00480	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CJ12660_RS00490	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CJ12660_RS00495	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CJ12660_RS00495	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CJ12660_RS00500	COG1192	Involved in chromosome partitioning
CJ12660_RS00505	COG1475	DNA binding
CJ12660_RS00515	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CJ12660_RS00520	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CJ12660_RS00530	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CJ12660_RS00535	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CJ12660_RS00540	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CJ12660_RS00545	COG0811	peptide transport
CJ12660_RS00550	COG0848	biopolymer transport protein
CJ12660_RS00560	COG0823	Involved in the tonB-independent uptake of proteins
CJ12660_RS00565	COG2885	chlorophyll binding
CJ12660_RS00575	COG1047	Peptidyl-prolyl cis-trans
CJ12660_RS00580	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CJ12660_RS00585	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CJ12660_RS00590	COG0037	tRNA processing
CJ12660_RS00615	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CJ12660_RS00625	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CJ12660_RS00630	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CJ12660_RS00635	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CJ12660_RS00645	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJ12660_RS00660	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CJ12660_RS00670	COG0083	homoserine kinase activity
CJ12660_RS00680	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CJ12660_RS00705	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CJ12660_RS00710	COG1121	(ABC) transporter
CJ12660_RS00720	COG0840	transmembrane signaling receptor activity
CJ12660_RS00725	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CJ12660_RS00735	COG0418	dihydroorotase activity
CJ12660_RS00745	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CJ12660_RS00750	COG2194	sulfuric ester hydrolase activity
CJ12660_RS00755	COG0708	Exodeoxyribonuclease III
CJ12660_RS00765	COG2921	Belongs to the UPF0250 family
CJ12660_RS00770	COG0315	cyclic pyranopterin monophosphate synthase activity
CJ12660_RS00780	COG0477	Major facilitator Superfamily
CJ12660_RS00800	COG0840	transmembrane signaling receptor activity
CJ12660_RS00800	COG3290	protein histidine kinase activity
CJ12660_RS00805	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CJ12660_RS00810	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CJ12660_RS00835	COG0668	transmembrane transport
CJ12660_RS00840	COG0288	reversible hydration of carbon dioxide
CJ12660_RS00845	COG0670	Belongs to the BI1 family
CJ12660_RS00850	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CJ12660_RS00855	COG0233	cytoplasmic translational termination
CJ12660_RS00860	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CJ12660_RS00870	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CJ12660_RS00880	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CJ12660_RS00885	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CJ12660_RS00890	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CJ12660_RS00895	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CJ12660_RS00905	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CJ12660_RS00950	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CJ12660_RS00955	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CJ12660_RS00960	COG1968	undecaprenyl-diphosphatase activity
CJ12660_RS00965	COG1297	OPT oligopeptide transporter protein
CJ12660_RS00970	COG2851	Citrate transporter
CJ12660_RS00995	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CJ12660_RS00995	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CJ12660_RS01000	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CJ12660_RS01005	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CJ12660_RS01010	COG1157	protein secretion by the type III secretion system
CJ12660_RS01015	COG0302	gtp cyclohydrolase
CJ12660_RS01020	COG0544	peptidyl-prolyl cis-trans isomerase activity
CJ12660_RS01030	COG0242	peptide deformylase activity
CJ12660_RS01035	COG0606	chelatase, subunit chli
CJ12660_RS01045	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CJ12660_RS01045	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CJ12660_RS01050	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CJ12660_RS01055	COG0861	Integral membrane protein TerC family
CJ12660_RS01060	COG2824	Alkylphosphonate utilization operon protein PhnA
CJ12660_RS01070	COG1253	flavin adenine dinucleotide binding
CJ12660_RS01075	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CJ12660_RS01085	COG0848	biopolymer transport protein
CJ12660_RS01090	COG0811	peptide transport
CJ12660_RS01095	COG1629	transport
CJ12660_RS01095	COG4206	TonB-dependent receptor
CJ12660_RS01110	COG1840	ABC-type Fe3 transport system, periplasmic component
CJ12660_RS01140	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CJ12660_RS01155	COG1971	Probably functions as a manganese efflux pump
CJ12660_RS01180	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CJ12660_RS01185	COG0602	queuosine metabolic process
CJ12660_RS01205	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CJ12660_RS01210	COG0254	rRNA binding
CJ12660_RS01215	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CJ12660_RS01220	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJ12660_RS01235	COG0436	Aminotransferase
CJ12660_RS01240	COG0460	homoserine dehydrogenase
CJ12660_RS01245	COG0792	nuclease activity
CJ12660_RS01250	COG3118	belongs to the thioredoxin family
CJ12660_RS01255	COG0492	ferredoxin-NADP+ reductase activity
CJ12660_RS01270	COG0428	transporter
CJ12660_RS01275	COG0243	molybdopterin cofactor binding
CJ12660_RS01295	COG0330	HflC and HflK could
CJ12660_RS01305	COG1942	4-Oxalocrotonate Tautomerase
CJ12660_RS01310	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CJ12660_RS01315	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CJ12660_RS01320	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CJ12660_RS01325	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJ12660_RS01330	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CJ12660_RS01335	COG1077	Cell shape determining protein MreB Mrl
CJ12660_RS01345	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CJ12660_RS01365	COG0835	chemotaxis
CJ12660_RS01370	COG0784	Response regulator, receiver
CJ12660_RS01370	COG2198	Histidine kinase
CJ12660_RS01370	COG0643	Histidine kinase
CJ12660_RS01375	COG0835	chemotaxis
CJ12660_RS01375	COG0784	Response regulator, receiver
CJ12660_RS01390	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJ12660_RS01420	COG0454	-acetyltransferase
CJ12660_RS01465	COG4106	trans-aconitate 2-methyltransferase activity
CJ12660_RS01470	COG2830	Protein of unknown function (DUF452)
CJ12660_RS01480	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJ12660_RS01485	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CJ12660_RS01490	COG2076	Multidrug Resistance protein
CJ12660_RS01515	COG0019	diaminopimelate decarboxylase activity
CJ12660_RS01530	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJ12660_RS01540	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJ12660_RS01550	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CJ12660_RS01570	COG1570	exodeoxyribonuclease VII activity
CJ12660_RS01575	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CJ12660_RS01580	COG0251	oxidation-reduction process
CJ12660_RS01585	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CJ12660_RS01590	COG0416	fatty acid biosynthetic process
CJ12660_RS01595	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CJ12660_RS01605	COG0105	UTP biosynthetic process
CJ12660_RS01615	COG0450	alkyl hydroperoxide reductase
CJ12660_RS01620	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJ12660_RS01625	COG1360	Flagellar Motor Protein
CJ12660_RS01630	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CJ12660_RS01640	COG0477	Major facilitator Superfamily
CJ12660_RS01650	COG1238	metal cluster binding
CJ12660_RS01655	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CJ12660_RS01660	COG0730	response to heat
CJ12660_RS01675	COG0512	Glutamine amidotransferase of anthranilate synthase
CJ12660_RS01675	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJ12660_RS01685	COG0133	tryptophan synthase activity
CJ12660_RS01700	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJ12660_RS01700	COG1776	CheC inhibitor of MCP methylation
CJ12660_RS01715	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJ12660_RS01720	COG0745	RESPONSE REGULATOR receiver
CJ12660_RS01730	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CJ12660_RS01745	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CJ12660_RS01750	COG1981	membrane
CJ12660_RS01755	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJ12660_RS01765	COG1538	Outer membrane efflux protein
CJ12660_RS01775	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJ12660_RS01790	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CJ12660_RS01805	COG0754	glutathionylspermidine amidase activity
CJ12660_RS01810	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJ12660_RS01815	COG1666	GTP binding
CJ12660_RS01830	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJ12660_RS01860	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CJ12660_RS01890	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CJ12660_RS01905	COG0469	pyruvate kinase activity
CJ12660_RS01910	COG0579	oxidoreductase
CJ12660_RS01915	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CJ12660_RS01950	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CJ12660_RS01955	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CJ12660_RS01970	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CJ12660_RS01990	COG1053	succinate dehydrogenase
CJ12660_RS01995	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJ12660_RS02045	COG2353	YceI-like domain
CJ12660_RS02075	COG0488	(ABC) transporter
CJ12660_RS02090	COG1739	Uncharacterized protein family UPF0029
CJ12660_RS02130	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CJ12660_RS02135	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CJ12660_RS02140	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CJ12660_RS02150	COG1028	Short-chain dehydrogenase reductase Sdr
CJ12660_RS02160	COG1053	succinate dehydrogenase
CJ12660_RS02165	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJ12660_RS02170	COG2048	Heterodisulfide reductase, subunit B
CJ12660_RS02175	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CJ12660_RS02180	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJ12660_RS02185	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJ12660_RS02190	COG0825	malonyl-CoA metabolic process
CJ12660_RS02215	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CJ12660_RS02220	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CJ12660_RS02230	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CJ12660_RS02250	COG2121	Domain of unknown function (DUF374)
CJ12660_RS02255	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJ12660_RS02265	COG0195	Participates in both transcription termination and antitermination
CJ12660_RS02275	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CJ12660_RS02280	COG0612	Peptidase, M16
CJ12660_RS02285	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CJ12660_RS02290	COG2346	COG2346, Truncated hemoglobins
CJ12660_RS02305	COG0765	amino acid transport
CJ12660_RS02335	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CJ12660_RS02340	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CJ12660_RS02355	COG0250	Participates in transcription elongation, termination and antitermination
CJ12660_RS02360	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CJ12660_RS02365	COG0081	regulation of translation
CJ12660_RS02370	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CJ12660_RS02375	COG0222	ribosome binding
CJ12660_RS02380	COG0085	RNA polymerase activity
CJ12660_RS02385	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CJ12660_RS02395	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJ12660_RS02405	COG2721	sulfolactate sulfo-lyase activity
CJ12660_RS02415	COG1028	Short-chain dehydrogenase reductase Sdr
CJ12660_RS02420	COG0738	Major facilitator superfamily
CJ12660_RS02430	COG3254	rhamnose metabolic process
CJ12660_RS02440	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CJ12660_RS02445	COG0049	tRNA binding
CJ12660_RS02465	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CJ12660_RS02490	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
CJ12660_RS02495	COG0004	ammonium transporteR
CJ12660_RS02505	COG0673	inositol 2-dehydrogenase activity
CJ12660_RS02515	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CJ12660_RS02520	COG0424	maF-like protein
CJ12660_RS02530	COG0542	response to heat
CJ12660_RS02535	COG1937	Protein conserved in bacteria
CJ12660_RS02540	COG0793	Belongs to the peptidase S41A family
CJ12660_RS02545	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CJ12660_RS02550	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CJ12660_RS02555	COG0047	phosphoribosylformylglycinamidine synthase activity
CJ12660_RS02565	COG0204	Acyl-transferase
CJ12660_RS02570	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CJ12660_RS02575	COG0326	Molecular chaperone. Has ATPase activity
CJ12660_RS02580	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CJ12660_RS02610	COG1677	Flagellar hook-basal body complex protein FliE
CJ12660_RS02615	COG1558	bacterial-type flagellum-dependent cell motility
CJ12660_RS02620	COG1815	bacterial-type flagellum-dependent cell motility
CJ12660_RS02640	COG0039	L-malate dehydrogenase activity
CJ12660_RS02650	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CJ12660_RS02660	COG0674	pyruvate-flavodoxin oxidoreductase activity
CJ12660_RS02660	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CJ12660_RS02665	COG1013	pyruvate-flavodoxin oxidoreductase activity
CJ12660_RS02685	COG0142	geranyltranstransferase activity
CJ12660_RS02690	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CJ12660_RS02695	COG0442	prolyl-tRNA aminoacylation
CJ12660_RS02705	COG0181	hydroxymethylbilane synthase activity
CJ12660_RS02710	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CJ12660_RS02720	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CJ12660_RS02740	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CJ12660_RS02770	COG1289	transmembrane transporter activity
CJ12660_RS02775	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CJ12660_RS02780	COG0492	ferredoxin-NADP+ reductase activity
CJ12660_RS02795	COG0305	Participates in initiation and elongation during chromosome replication
CJ12660_RS02810	COG4735	regulation of single-species biofilm formation
CJ12660_RS02815	COG4735	regulation of single-species biofilm formation
CJ12660_RS02860	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJ12660_RS02860	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJ12660_RS02865	COG1610	YqeY-like protein
CJ12660_RS02870	COG0028	Belongs to the TPP enzyme family
CJ12660_RS02875	COG0440	acetolactate synthase activity
CJ12660_RS02885	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CJ12660_RS02890	COG0805	protein transport
CJ12660_RS02900	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJ12660_RS02905	COG0494	nUDIX hydrolase
CJ12660_RS02910	COG0527	aspartate kinase activity
CJ12660_RS02925	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CJ12660_RS02930	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CJ12660_RS02945	COG0196	riboflavin kinase activity
CJ12660_RS02950	COG2890	protein-(glutamine-N5) methyltransferase activity
CJ12660_RS02965	COG2860	membrane
CJ12660_RS02975	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CJ12660_RS02980	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJ12660_RS02985	COG0191	fructose-bisphosphate aldolase activity
CJ12660_RS03005	COG0733	neurotransmitter:sodium symporter activity
CJ12660_RS03010	COG2258	MOSC domain
CJ12660_RS03025	COG1473	amidohydrolase
CJ12660_RS03030	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJ12660_RS03035	COG1136	(ABC) transporter
CJ12660_RS03035	COG0577	efflux transmembrane transporter activity
CJ12660_RS03040	COG1538	Outer membrane efflux protein
CJ12660_RS03055	COG1696	Membrane protein involved in D-alanine export
CJ12660_RS03060	COG1528	Iron-storage protein
CJ12660_RS03065	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CJ12660_RS03070	COG0573	inorganic phosphate transmembrane transporter activity
CJ12660_RS03075	COG0581	inorganic phosphate transmembrane transporter activity
CJ12660_RS03090	COG0534	Mate efflux family protein
CJ12660_RS03105	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CJ12660_RS03115	COG0298	carbon dioxide binding
CJ12660_RS03120	COG0409	Hydrogenase expression formation protein
CJ12660_RS03125	COG0309	Hydrogenase expression formation protein (HypE)
CJ12660_RS03130	COG0375	protein maturation
CJ12660_RS03145	COG0557	exoribonuclease II activity
CJ12660_RS03160	COG0758	DNA mediated transformation
CJ12660_RS03180	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CJ12660_RS03190	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CJ12660_RS03200	COG0497	DNA recombination
CJ12660_RS03210	COG0084	hydrolase, TatD family'
CJ12660_RS03215	COG1388	LysM domain
CJ12660_RS03215	COG0791	NLP P60 protein
CJ12660_RS03220	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CJ12660_RS03295	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CJ12660_RS03300	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CJ12660_RS03315	COG0137	argininosuccinate synthase activity
CJ12660_RS03320	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CJ12660_RS03325	COG0802	atpase or kinase
CJ12660_RS03330	COG1137	ATPase activity
CJ12660_RS03335	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CJ12660_RS03340	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CJ12660_RS03360	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
CJ12660_RS03365	COG2205	protein histidine kinase activity
CJ12660_RS03370	COG0556	nucleotide-excision repair
CJ12660_RS03390	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CJ12660_RS03400	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CJ12660_RS03410	COG0280	phosphate acetyltransferase
CJ12660_RS03415	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CJ12660_RS03435	COG0275	rRNA processing
CJ12660_RS03440	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJ12660_RS03445	COG0849	cell division
CJ12660_RS03450	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CJ12660_RS03455	COG4786	Flagellar basal body rod
CJ12660_RS03460	COG4786	Flagellar basal body rod
CJ12660_RS03465	COG0174	glutamine synthetase
CJ12660_RS03475	COG0826	peptidase U32
CJ12660_RS03480	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CJ12660_RS03490	COG0752	glycyl-tRNA synthetase alpha subunit
CJ12660_RS03495	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CJ12660_RS03505	COG1519	Transferase
CJ12660_RS03505	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CJ12660_RS03510	COG0564	pseudouridine synthase activity
CJ12660_RS03515	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CJ12660_RS03520	COG0228	four-way junction DNA binding
CJ12660_RS03525	COG1837	Belongs to the UPF0109 family
CJ12660_RS03530	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CJ12660_RS03535	COG0336	Belongs to the RNA methyltransferase TrmD family
CJ12660_RS03550	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CJ12660_RS03555	COG1393	Belongs to the ArsC family
CJ12660_RS03565	COG0587	DNA-directed DNA polymerase activity
CJ12660_RS03570	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CJ12660_RS03575	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CJ12660_RS03585	COG2890	protein-(glutamine-N5) methyltransferase activity
CJ12660_RS03590	COG0501	Belongs to the peptidase M48B family
CJ12660_RS03600	COG0521	Mo-molybdopterin cofactor biosynthetic process
CJ12660_RS03605	COG0598	Magnesium transport protein CorA
CJ12660_RS03635	COG3842	ATPase activity
CJ12660_RS03715	COG0675	Transposase, IS605 OrfB family
CJ12660_RS03725	COG4771	TonB-dependent receptor
CJ12660_RS03730	COG1420	regulation of RNA biosynthetic process
CJ12660_RS03735	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CJ12660_RS03740	COG0443	Heat shock 70 kDa protein
CJ12660_RS03760	COG0436	Aminotransferase
CJ12660_RS03765	COG1045	serine acetyltransferase
CJ12660_RS03770	COG1166	arginine decarboxylase activity
CJ12660_RS03785	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CJ12660_RS03790	COG0163	prenyltransferase activity
CJ12660_RS03800	COG1464	Belongs to the NlpA lipoprotein family
CJ12660_RS03805	COG1464	Belongs to the NlpA lipoprotein family
CJ12660_RS03810	COG1464	Belongs to the NlpA lipoprotein family
CJ12660_RS03815	COG2011	ABC-type metal ion transport system permease component
CJ12660_RS03820	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CJ12660_RS03825	COG0525	valine-tRNA ligase activity
CJ12660_RS03835	COG0210	DNA helicase
CJ12660_RS03845	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CJ12660_RS03855	COG0437	4 iron, 4 sulfur cluster binding
CJ12660_RS03860	COG0348	domain, Protein
CJ12660_RS03865	COG3043	anaerobic respiration
CJ12660_RS03900	COG0788	formyltetrahydrofolate deformylase activity
CJ12660_RS03905	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CJ12660_RS03915	COG0642	Histidine kinase
CJ12660_RS03940	COG1181	Belongs to the D-alanine--D-alanine ligase family
CJ12660_RS03945	COG0632	four-way junction helicase activity
CJ12660_RS03955	COG0728	peptidoglycan biosynthetic process
CJ12660_RS03960	COG0215	cysteine-tRNA ligase activity
CJ12660_RS03965	COG1132	(ABC) transporter
CJ12660_RS03970	COG0167	dihydroorotate dehydrogenase activity
CJ12660_RS03975	COG0612	Peptidase, M16
CJ12660_RS03980	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJ12660_RS03985	COG1028	Short-chain dehydrogenase reductase Sdr
CJ12660_RS04000	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CJ12660_RS04005	COG1663	tetraacyldisaccharide 4'-kinase activity
CJ12660_RS04010	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CJ12660_RS04015	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CJ12660_RS04030	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJ12660_RS04045	COG1338	Plays a role in the flagellum-specific transport system
CJ12660_RS04050	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CJ12660_RS04080	COG0101	tRNA pseudouridine synthase activity
CJ12660_RS04085	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CJ12660_RS04100	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CJ12660_RS04105	COG1757	Na H antiporter
CJ12660_RS04110	COG4221	oxidoreductase activity
CJ12660_RS04120	COG1049	propionate catabolic process, 2-methylcitrate cycle
CJ12660_RS04125	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CJ12660_RS04135	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJ12660_RS04135	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJ12660_RS04145	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CJ12660_RS04170	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJ12660_RS04175	COG1408	metallophosphoesterase
CJ12660_RS04180	COG0688	phosphatidylethanolamine metabolic process
CJ12660_RS04210	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CJ12660_RS04220	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CJ12660_RS04225	COG0681	Belongs to the peptidase S26 family
CJ12660_RS04230	COG0303	'Molybdopterin
CJ12660_RS04235	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CJ12660_RS04250	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJ12660_RS04250	COG0512	Glutamine amidotransferase of anthranilate synthase
CJ12660_RS04255	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CJ12660_RS04260	COG0582	viral genome integration into host DNA
CJ12660_RS04270	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CJ12660_RS04310	COG2404	hydrolase activity, acting on ester bonds
CJ12660_RS04315	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJ12660_RS04320	COG1959	2 iron, 2 sulfur cluster binding
CJ12660_RS04325	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CJ12660_RS04330	COG1196	nuclear chromosome segregation
CJ12660_RS04330	COG1674	ftsk spoiiie
CJ12660_RS04335	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CJ12660_RS04350	COG0488	(ABC) transporter
CJ12660_RS04355	COG5002	protein histidine kinase activity
CJ12660_RS04360	COG0745	RESPONSE REGULATOR receiver
CJ12660_RS04365	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJ12660_RS04375	COG0539	negative regulation of cytoplasmic translation
CJ12660_RS04375	COG1185	polyribonucleotide nucleotidyltransferase activity
CJ12660_RS04380	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CJ12660_RS04385	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CJ12660_RS04390	COG0072	phenylalanine-tRNA ligase activity
CJ12660_RS04390	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJ12660_RS04395	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CJ12660_RS04400	COG0537	adenosine 5'-monophosphoramidase activity
CJ12660_RS04415	COG0765	amino acid transport
CJ12660_RS04425	COG1115	amino acid carrier protein
CJ12660_RS04430	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CJ12660_RS04435	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CJ12660_RS04460	COG1999	signal sequence binding
CJ12660_RS04465	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CJ12660_RS04470	COG0776	regulation of translation
CJ12660_RS04490	COG1966	Carbon starvation protein
CJ12660_RS04495	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CJ12660_RS04500	COG0765	amino acid transport
CJ12660_RS04505	COG0765	amino acid transport
CJ12660_RS04510	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJ12660_RS04515	COG1126	abc transporter atp-binding protein
CJ12660_RS04520	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CJ12660_RS04525	COG2201	protein-glutamate methylesterase activity
CJ12660_RS04540	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CJ12660_RS04550	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CJ12660_RS04555	COG0012	GTP binding
CJ12660_RS04560	COG0165	Argininosuccinate lyase
CJ12660_RS04565	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
CJ12660_RS04570	COG0511	ligase activity, forming carbon-carbon bonds
CJ12660_RS04570	COG5016	pyruvate
CJ12660_RS04575	COG0733	neurotransmitter:sodium symporter activity
CJ12660_RS04580	COG0733	neurotransmitter:sodium symporter activity
CJ12660_RS04585	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CJ12660_RS04625	COG0863	Belongs to the N(4) N(6)-methyltransferase family
CJ12660_RS04905	COG0765	amino acid transport
CJ12660_RS04915	COG0653	protein targeting
CJ12660_RS04920	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CJ12660_RS04930	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CJ12660_RS04945	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CJ12660_RS04960	COG0840	transmembrane signaling receptor activity
CJ12660_RS04965	COG0138	bifunctional purine biosynthesis protein purh
CJ12660_RS04970	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CJ12660_RS04975	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CJ12660_RS04980	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CJ12660_RS04990	COG0706	membrane insertase activity
CJ12660_RS04995	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CJ12660_RS05005	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CJ12660_RS05020	COG0824	Thioesterase
CJ12660_RS05060	COG0500	methyltransferase
CJ12660_RS05080	COG2195	Cleaves the N-terminal amino acid of tripeptides
CJ12660_RS05085	COG0477	Major facilitator Superfamily
CJ12660_RS05090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJ12660_RS05100	COG3022	response to hydroperoxide
CJ12660_RS05105	COG1473	amidohydrolase
CJ12660_RS05110	COG2807	transmembrane transport
CJ12660_RS05135	COG0247	lactate metabolic process
CJ12660_RS05135	COG2181	nitrate reductase activity
CJ12660_RS05140	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJ12660_RS05150	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CJ12660_RS05155	COG0113	porphobilinogen synthase activity
CJ12660_RS05160	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJ12660_RS05165	COG0357	Ribosomal RNA small subunit methyltransferase G
CJ12660_RS05175	COG2855	membrane
CJ12660_RS05180	COG0583	DNA-binding transcription factor activity
CJ12660_RS05185	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CJ12660_RS05205	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJ12660_RS05210	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJ12660_RS05230	COG0343	queuine tRNA-ribosyltransferase activity
CJ12660_RS05250	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJ12660_RS05250	COG1333	cytochrome c biogenesis protein
CJ12660_RS05300	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CJ12660_RS05305	COG2204	response regulator
CJ12660_RS05320	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CJ12660_RS05335	COG0481	GTPase activity
CJ12660_RS05360	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CJ12660_RS05370	COG0439	Biotin carboxylase
CJ12660_RS05375	COG0772	Belongs to the SEDS family
CJ12660_RS05380	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CJ12660_RS05400	COG0352	thiamine-phosphate diphosphorylase activity
CJ12660_RS05405	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJ12660_RS05410	COG2022	thiamine diphosphate biosynthetic process
CJ12660_RS05425	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJ12660_RS05435	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CJ12660_RS05445	COG1193	negative regulation of DNA recombination
CJ12660_RS05475	COG0517	IMP dehydrogenase activity
CJ12660_RS05475	COG0516	GMP reductase activity
CJ12660_RS05495	COG1058	Belongs to the CinA family
CJ12660_RS05495	COG1546	Belongs to the CinA family
CJ12660_RS05500	COG0456	acetyltransferase
CJ12660_RS05505	COG0778	Nitroreductase
CJ12660_RS05510	COG0778	Nitroreductase
CJ12660_RS05520	COG0750	zinc metalloprotease
CJ12660_RS05525	COG2990	Protein conserved in bacteria
CJ12660_RS05530	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJ12660_RS05540	COG0360	Binds together with S18 to 16S ribosomal RNA
CJ12660_RS05545	COG0629	single-stranded DNA binding
CJ12660_RS05550	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CJ12660_RS05555	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CJ12660_RS05565	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
CJ12660_RS05570	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CJ12660_RS05595	COG0352	thiamine-phosphate diphosphorylase activity
CJ12660_RS05615	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CJ12660_RS05625	COG0739	heme binding
CJ12660_RS05630	COG0285	dihydrofolate synthase activity
CJ12660_RS05645	COG0495	leucyl-tRNA aminoacylation
CJ12660_RS05650	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJ12660_RS05655	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJ12660_RS05660	COG1862	Preprotein translocase
CJ12660_RS05665	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CJ12660_RS05670	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CJ12660_RS05675	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
CJ12660_RS05680	COG0540	Belongs to the ATCase OTCase family
CJ12660_RS05695	COG0210	DNA helicase
CJ12660_RS05715	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CJ12660_RS05730	COG0542	response to heat
CJ12660_RS05735	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CJ12660_RS05745	COG2095	MarC family integral membrane protein
CJ12660_RS05750	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJ12660_RS05755	COG2833	Protein of unknown function (DUF455)
CJ12660_RS05760	COG1183	phosphatidylcholine synthase activity
CJ12660_RS05770	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJ12660_RS05775	COG2264	protein methyltransferase activity
CJ12660_RS05780	COG0745	RESPONSE REGULATOR receiver
CJ12660_RS05790	COG1086	Polysaccharide biosynthesis protein
CJ12660_RS05795	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJ12660_RS05805	COG0110	maltose O-acetyltransferase activity
CJ12660_RS05810	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CJ12660_RS05815	COG0438	transferase activity, transferring glycosyl groups
CJ12660_RS05820	COG1287	oligosaccharyl transferase activity
CJ12660_RS05825	COG0438	transferase activity, transferring glycosyl groups
CJ12660_RS05830	COG1215	transferase activity, transferring glycosyl groups
CJ12660_RS05835	COG0438	transferase activity, transferring glycosyl groups
CJ12660_RS05840	COG1132	(ABC) transporter
CJ12660_RS05845	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CJ12660_RS05855	COG0859	PFAM glycosyl transferase family 9
CJ12660_RS05860	COG1560	Kdo2-lipid A biosynthetic process
CJ12660_RS05865	COG0463	Glycosyl transferase, family 2
CJ12660_RS05870	COG1442	glycosyl transferase family 8
CJ12660_RS05870	COG1216	Glycosyl transferase, family 2
CJ12660_RS05880	COG1216	Glycosyl transferase, family 2
CJ12660_RS05880	COG1442	glycosyl transferase family 8
CJ12660_RS05895	COG2089	acid synthase
CJ12660_RS05915	COG1216	Glycosyl transferase, family 2
CJ12660_RS05925	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CJ12660_RS05940	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CJ12660_RS05955	COG2217	Heavy metal translocating P-type atpase
CJ12660_RS05960	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CJ12660_RS05965	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CJ12660_RS05970	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
CJ12660_RS05975	COG2217	Heavy metal translocating P-type atpase
CJ12660_RS05995	COG3610	response to peptide
CJ12660_RS06005	COG0039	L-malate dehydrogenase activity
CJ12660_RS06010	COG0586	Pfam SNARE associated Golgi protein
CJ12660_RS06025	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CJ12660_RS06045	COG0018	arginyl-trna synthetase
CJ12660_RS06050	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CJ12660_RS06055	COG0194	GDP metabolic process
CJ12660_RS06065	COG1684	flagellar biosynthetic protein fliR
CJ12660_RS06075	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CJ12660_RS06080	COG0052	Belongs to the universal ribosomal protein uS2 family
CJ12660_RS06085	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJ12660_RS06095	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CJ12660_RS06100	COG0723	plastoquinol--plastocyanin reductase activity
CJ12660_RS06105	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CJ12660_RS06130	COG1301	dicarboxylic acid transport
CJ12660_RS06145	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CJ12660_RS06155	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CJ12660_RS06160	COG1854	S-ribosylhomocysteine lyase activity
CJ12660_RS06175	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CJ12660_RS06180	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CJ12660_RS06195	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CJ12660_RS06200	COG0552	protein localization to endoplasmic reticulum
CJ12660_RS06215	COG1418	mRNA catabolic process
CJ12660_RS06230	COG1295	ribonuclease BN
CJ12660_RS06235	COG0277	FAD linked oxidase domain protein
CJ12660_RS06245	COG0739	heme binding
CJ12660_RS06255	COG1496	oxidoreductase activity
CJ12660_RS06270	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CJ12660_RS06275	COG0459	protein refolding
CJ12660_RS06280	COG0642	Histidine kinase
CJ12660_RS06285	COG0745	RESPONSE REGULATOR receiver
CJ12660_RS06305	COG0642	Histidine kinase
CJ12660_RS06310	COG0745	RESPONSE REGULATOR receiver
CJ12660_RS06315	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJ12660_RS06320	COG0484	heat shock protein binding
CJ12660_RS06325	COG0789	Transcriptional regulator
CJ12660_RS06330	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJ12660_RS06330	COG0475	glutathione-regulated potassium exporter activity
CJ12660_RS06340	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CJ12660_RS06345	COG0751	glycine-tRNA ligase activity
CJ12660_RS06350	COG0739	heme binding
CJ12660_RS06360	COG0248	Ppx GppA phosphatase
CJ12660_RS06365	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CJ12660_RS06370	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CJ12660_RS06380	COG2814	Major facilitator Superfamily
CJ12660_RS06390	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CJ12660_RS06395	COG0731	radical SAM domain protein
CJ12660_RS06405	COG0322	excinuclease ABC activity
CJ12660_RS06415	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CJ12660_RS06415	COG0519	Catalyzes the synthesis of GMP from XMP
CJ12660_RS06440	COG1185	polyribonucleotide nucleotidyltransferase activity
CJ12660_RS06460	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CJ12660_RS06465	COG4773	Receptor
CJ12660_RS06470	COG0484	heat shock protein binding
CJ12660_RS06475	COG0745	RESPONSE REGULATOR receiver
CJ12660_RS06480	COG0642	Histidine kinase
CJ12660_RS06485	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CJ12660_RS06490	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CJ12660_RS06495	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CJ12660_RS06500	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CJ12660_RS06505	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CJ12660_RS06510	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJ12660_RS06510	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CJ12660_RS06525	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CJ12660_RS06530	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CJ12660_RS06535	COG1758	RNA polymerase activity
CJ12660_RS06540	COG0528	UMP kinase activity
CJ12660_RS06555	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CJ12660_RS06560	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CJ12660_RS06570	COG0564	pseudouridine synthase activity
CJ12660_RS06575	COG0772	Belongs to the SEDS family
CJ12660_RS06590	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CJ12660_RS06595	COG0569	domain protein
CJ12660_RS06600	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
CJ12660_RS06605	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CJ12660_RS06610	COG0280	phosphate acetyltransferase
CJ12660_RS06610	COG0281	malic enzyme
CJ12660_RS06615	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJ12660_RS06625	COG0439	Biotin carboxylase
CJ12660_RS06630	COG0511	ligase activity, forming carbon-carbon bonds
CJ12660_RS06635	COG0717	Belongs to the dCTP deaminase family
CJ12660_RS06640	COG1086	Polysaccharide biosynthesis protein
CJ12660_RS06645	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJ12660_RS06650	COG4310	Domain of unknown function (DUF2172)
CJ12660_RS06685	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CJ12660_RS06725	COG1083	cytidylyl-transferase
CJ12660_RS06730	COG3980	spore coat polysaccharide biosynthesis protein
CJ12660_RS06735	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CJ12660_RS06740	COG0107	imidazoleglycerol-phosphate synthase activity
CJ12660_RS06755	COG2089	acid synthase
CJ12660_RS06765	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJ12660_RS06770	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJ12660_RS06795	COG2089	acid synthase
CJ12660_RS06800	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CJ12660_RS06805	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CJ12660_RS06815	COG1083	cytidylyl-transferase
CJ12660_RS06820	COG1028	Short-chain dehydrogenase reductase Sdr
CJ12660_RS06850	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CJ12660_RS06855	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CJ12660_RS06875	COG2165	general secretion pathway protein
CJ12660_RS06880	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CJ12660_RS06890	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CJ12660_RS06895	COG0575	Belongs to the CDS family
CJ12660_RS06905	COG1293	RNA-binding protein homologous to eukaryotic snRNP
CJ12660_RS06915	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
CJ12660_RS06920	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJ12660_RS06925	COG4605	iron ion homeostasis
CJ12660_RS06930	COG4604	ABC transporter, ATP-binding protein
CJ12660_RS06935	COG4607	ABC-type enterochelin transport system periplasmic component
CJ12660_RS06950	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
CJ12660_RS06955	COG3005	denitrification pathway
CJ12660_RS06960	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CJ12660_RS06975	COG2255	four-way junction helicase activity
CJ12660_RS06980	COG0628	permease
CJ12660_RS06985	COG0114	fumarate hydratase activity
CJ12660_RS06995	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CJ12660_RS07005	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CJ12660_RS07010	COG2252	PERMEase
CJ12660_RS07020	COG2853	Lipoprotein
CJ12660_RS07035	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CJ12660_RS07040	COG2814	Major facilitator Superfamily
CJ12660_RS07055	COG1921	L-seryl-tRNASec selenium transferase activity
CJ12660_RS07060	COG3276	selenocysteine insertion sequence binding
CJ12660_RS07075	COG0716	FMN binding
CJ12660_RS07090	COG0753	catalase activity
CJ12660_RS07100	COG2964	Protein conserved in bacteria
CJ12660_RS07105	COG0251	oxidation-reduction process
CJ12660_RS07130	COG1918	ferrous iron import across plasma membrane
CJ12660_RS07135	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CJ12660_RS07140	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CJ12660_RS07145	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CJ12660_RS07150	COG0149	triose-phosphate isomerase activity
CJ12660_RS07155	COG0126	phosphoglycerate kinase activity
CJ12660_RS07160	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CJ12660_RS07185	COG1580	Controls the rotational direction of flagella during chemotaxis
CJ12660_RS07190	COG0736	holo-[acyl-carrier-protein] synthase activity
CJ12660_RS07200	COG2124	cytochrome p450
CJ12660_RS07220	COG0529	Catalyzes the synthesis of activated sulfate
CJ12660_RS07225	COG1213	nucleotidyl transferase
CJ12660_RS07230	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CJ12660_RS07235	COG3848	Pyruvate phosphate dikinase
CJ12660_RS07235	COG0574	Belongs to the PEP-utilizing enzyme family
CJ12660_RS07240	COG2226	methyltransferase
CJ12660_RS07265	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CJ12660_RS07285	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJ12660_RS07315	COG1216	Glycosyl transferase, family 2
CJ12660_RS07330	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJ12660_RS07335	COG1216	Glycosyl transferase, family 2
CJ12660_RS07340	COG0562	UDP-galactopyranose mutase
CJ12660_RS07345	COG1216	Glycosyl transferase, family 2
CJ12660_RS07345	COG1442	glycosyl transferase family 8
CJ12660_RS07360	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CJ12660_RS07360	COG0517	IMP dehydrogenase activity
CJ12660_RS07405	COG0037	tRNA processing
CJ12660_RS07410	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJ12660_RS07415	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CJ12660_RS07425	COG0585	pseudouridine synthase activity
CJ12660_RS07430	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CJ12660_RS07450	COG1706	bacterial-type flagellum-dependent cell motility
CJ12660_RS07455	COG3951	Flagellar rod assembly protein muramidase FlgJ
CJ12660_RS07480	COG0730	response to heat
CJ12660_RS07485	COG1459	type II secretion system
CJ12660_RS07490	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CJ12660_RS07520	COG0546	phosphoglycolate phosphatase activity
CJ12660_RS07530	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CJ12660_RS07535	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CJ12660_RS07540	COG0210	DNA helicase
CJ12660_RS07545	COG2887	Belongs to the helicase family. UvrD subfamily
CJ12660_RS07590	COG0745	RESPONSE REGULATOR receiver
CJ12660_RS07605	COG0505	Belongs to the CarA family
CJ12660_RS07625	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CJ12660_RS07640	COG0425	Belongs to the sulfur carrier protein TusA family
CJ12660_RS07645	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CJ12660_RS07675	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CJ12660_RS07685	COG0437	4 iron, 4 sulfur cluster binding
CJ12660_RS07720	COG0314	molybdopterin synthase activity
CJ12660_RS07725	COG0303	'Molybdopterin
CJ12660_RS07730	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CJ12660_RS07740	COG3513	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
CJ12660_RS07755	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CJ12660_RS07760	COG0237	dephospho-CoA kinase activity
CJ12660_RS07765	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CJ12660_RS07770	COG2992	FlgJ-related protein
CJ12660_RS07780	COG0783	Belongs to the Dps family
CJ12660_RS07785	COG0166	Belongs to the GPI family
CJ12660_RS07795	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJ12660_RS07800	COG3839	Belongs to the ABC transporter superfamily
CJ12660_RS07805	COG4662	Binding-protein-dependent transport system inner membrane component
CJ12660_RS07810	COG2998	abc-type tungstate transport system, permease component
CJ12660_RS07815	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CJ12660_RS07820	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CJ12660_RS07825	COG1984	allophanate hydrolase subunit 2
CJ12660_RS07835	COG2249	NAD(P)H dehydrogenase (quinone) activity
CJ12660_RS07840	COG1733	regulation of RNA biosynthetic process
CJ12660_RS07850	COG1064	alcohol dehydrogenase
CJ12660_RS07855	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CJ12660_RS07875	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CJ12660_RS07885	COG2910	NAD(P)H-binding
CJ12660_RS07890	COG1733	regulation of RNA biosynthetic process
CJ12660_RS07910	COG0840	transmembrane signaling receptor activity
CJ12660_RS07925	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJ12660_RS07930	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CJ12660_RS07940	COG0839	Belongs to the complex I subunit 6 family
CJ12660_RS07975	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJ12660_RS07980	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJ12660_RS07985	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJ12660_RS08000	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJ12660_RS08005	COG0601	transmembrane transport
CJ12660_RS08015	COG0277	FAD linked oxidase domain protein
CJ12660_RS08025	COG4615	Cyclic peptide transporter
CJ12660_RS08040	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CJ12660_RS08045	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CJ12660_RS08055	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CJ12660_RS08060	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CJ12660_RS08065	COG0202	RNA polymerase activity
CJ12660_RS08070	COG0203	ribosomal protein L17
CJ12660_RS08080	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CJ12660_RS08085	COG0131	Imidazoleglycerol-phosphate dehydratase
CJ12660_RS08085	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CJ12660_RS08095	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CJ12660_RS08110	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CJ12660_RS08110	COG0140	phosphoribosyl-ATP diphosphatase activity
CJ12660_RS08115	COG2171	N-acyltransferase activity
CJ12660_RS08120	COG0489	protein tyrosine kinase activity
CJ12660_RS08125	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CJ12660_RS08125	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CJ12660_RS08135	COG2046	Belongs to the sulfate adenylyltransferase family
CJ12660_RS08140	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CJ12660_RS08145	COG0268	Binds directly to 16S ribosomal RNA
CJ12660_RS08150	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CJ12660_RS08155	COG0748	coenzyme F420 binding
CJ12660_RS08160	COG4771	TonB-dependent receptor
CJ12660_RS08165	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJ12660_RS08170	COG1120	ATPase activity
CJ12660_RS08175	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CJ12660_RS08185	COG0477	Major facilitator Superfamily
CJ12660_RS08190	COG1194	a g-specific adenine glycosylase
CJ12660_RS08220	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJ12660_RS08220	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJ12660_RS08230	COG1760	l-serine dehydratase
CJ12660_RS08235	COG0814	amino acid
CJ12660_RS08250	COG0811	peptide transport
CJ12660_RS08255	COG0848	biopolymer transport protein
CJ12660_RS08280	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CJ12660_RS08285	COG0571	ribonuclease III activity
CJ12660_RS08290	COG0328	RNA-DNA hybrid ribonuclease activity
CJ12660_RS08300	COG0358	DNA primase activity
CJ12660_RS08315	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CJ12660_RS08320	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CJ12660_RS08335	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CJ12660_RS08340	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CJ12660_RS08345	COG1127	ABC transporter
CJ12660_RS08355	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CJ12660_RS08355	COG3218	ABC-type transport auxiliary lipoprotein component
CJ12660_RS08365	COG0024	Methionine aminopeptidase
CJ12660_RS08370	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CJ12660_RS08375	COG0791	NLP P60 protein
CJ12660_RS08380	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CJ12660_RS08385	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CJ12660_RS08400	COG0672	)-iron permease
CJ12660_RS08425	COG1136	(ABC) transporter
CJ12660_RS08475	COG1793	dna ligase
CJ12660_RS08490	COG0148	phosphopyruvate hydratase activity
CJ12660_RS08495	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CJ12660_RS08500	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
CJ12660_RS08505	COG1987	bacterial-type flagellum assembly
CJ12660_RS08510	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CJ12660_RS08530	COG1218	3'(2'),5'-bisphosphate nucleotidase
CJ12660_RS08535	COG0372	Belongs to the citrate synthase family
CJ12660_RS08545	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJ12660_RS08550	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CJ12660_RS08560	COG0201	protein transport
CJ12660_RS08565	COG0200	Binds to the 23S rRNA
CJ12660_RS08570	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CJ12660_RS08575	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CJ12660_RS08580	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CJ12660_RS08585	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CJ12660_RS08590	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CJ12660_RS08595	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CJ12660_RS08600	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CJ12660_RS08605	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CJ12660_RS08610	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CJ12660_RS08615	COG0255	Belongs to the universal ribosomal protein uL29 family
CJ12660_RS08620	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CJ12660_RS08625	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CJ12660_RS08635	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CJ12660_RS08645	COG0089	rRNA binding
CJ12660_RS08650	COG0088	Forms part of the polypeptide exit tunnel
CJ12660_RS08655	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CJ12660_RS08660	COG0051	transcription antitermination factor activity, RNA binding
CJ12660_RS08665	COG1187	pseudouridine synthase activity
CJ12660_RS08670	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CJ12660_RS08675	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CJ12660_RS08685	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CJ12660_RS08725	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CJ12660_RS08730	COG0473	3-isopropylmalate dehydrogenase activity
CJ12660_RS08735	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CJ12660_RS08755	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CJ12660_RS08765	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
CJ12660_RS08775	COG1749	Flagellar hook protein flgE
CJ12660_RS08780	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group