locus-tag class description CJ12661_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CJ12661_RS00005 PF11638 DnaA N-terminal domain CJ12661_RS00005 PF00308 Bacterial dnaA protein CJ12661_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CJ12661_RS00010 PF02767 DNA polymerase III beta subunit, central domain CJ12661_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CJ12661_RS00015 PF01751 Toprim domain CJ12661_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12661_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CJ12661_RS00015 PF00204 DNA gyrase B CJ12661_RS00030 PF03553 Na+/H+ antiporter family CJ12661_RS00030 PF13726 Na+-H+ antiporter family CJ12661_RS00035 PF00310 Glutamine amidotransferases class-II CJ12661_RS00035 PF04898 Glutamate synthase central domain CJ12661_RS00035 PF01645 Conserved region in glutamate synthase CJ12661_RS00035 PF01493 GXGXG motif CJ12661_RS00040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJ12661_RS00040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ12661_RS00045 PF01351 Ribonuclease HII CJ12661_RS00055 PF02915 Rubrerythrin CJ12661_RS00060 PF00920 Dehydratase family CJ12661_RS00065 PF07274 Protein of unknown function (DUF1440) CJ12661_RS00075 PF06508 Queuosine biosynthesis protein QueC CJ12661_RS00090 PF12729 Four helix bundle sensory module for signal transduction CJ12661_RS00090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12661_RS00090 PF00672 HAMP domain CJ12661_RS00095 PF03150 Di-haem cytochrome c peroxidase CJ12661_RS00095 PF00034 Cytochrome c CJ12661_RS00095 PF14376 Haem-binding domain CJ12661_RS00100 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJ12661_RS00105 PF00849 RNA pseudouridylate synthase CJ12661_RS00110 PF10397 Adenylosuccinate lyase C-terminus CJ12661_RS00110 PF00206 Lyase CJ12661_RS00115 PF03477 ATP cone domain CJ12661_RS00115 PF02867 Ribonucleotide reductase, barrel domain CJ12661_RS00115 PF00317 Ribonucleotide reductase, all-alpha domain CJ12661_RS00120 PF00375 Sodium:dicarboxylate symporter family CJ12661_RS00125 PF02511 Thymidylate synthase complementing protein CJ12661_RS00130 PF00117 Glutamine amidotransferase class-I CJ12661_RS00130 PF06418 CTP synthase N-terminus CJ12661_RS00135 PF02272 DHHA1 domain CJ12661_RS00135 PF01368 DHH family CJ12661_RS00135 PF17768 RecJ OB domain CJ12661_RS00140 PF00710 Asparaginase, N-terminal CJ12661_RS00140 PF17763 Glutaminase/Asparaginase C-terminal domain CJ12661_RS00215 PF07690 Major Facilitator Superfamily CJ12661_RS00235 PF00679 Elongation factor G C-terminus CJ12661_RS00235 PF00009 Elongation factor Tu GTP binding domain CJ12661_RS00235 PF03144 Elongation factor Tu domain 2 CJ12661_RS00250 PF03963 Flagellar hook capping protein - N-terminal region CJ12661_RS00255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12661_RS00255 PF00460 Flagella basal body rod protein CJ12661_RS00255 PF07559 Flagellar basal body protein FlaE CJ12661_RS00275 PF00939 Sodium:sulfate symporter transmembrane region CJ12661_RS00285 PF03641 Possible lysine decarboxylase CJ12661_RS00310 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJ12661_RS00310 PF04509 CheC-like family CJ12661_RS00315 PF02154 Flagellar motor switch protein FliM CJ12661_RS00315 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJ12661_RS00320 PF04542 Sigma-70 region 2 CJ12661_RS00320 PF04539 Sigma-70 region 3 CJ12661_RS00320 PF04545 Sigma-70, region 4 CJ12661_RS00330 PF10609 NUBPL iron-transfer P-loop NTPase CJ12661_RS00335 PF00448 SRP54-type protein, GTPase domain CJ12661_RS00340 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CJ12661_RS00345 PF01220 Dehydroquinase class II CJ12661_RS00350 PF01979 Amidohydrolase family CJ12661_RS00355 PF01343 Peptidase family S49 CJ12661_RS00365 PF01814 Hemerythrin HHE cation binding domain CJ12661_RS00370 PF01814 Hemerythrin HHE cation binding domain CJ12661_RS00380 PF13183 4Fe-4S dicluster domain CJ12661_RS00380 PF11870 Domain of unknown function (DUF3390) CJ12661_RS00380 PF02589 LUD domain CJ12661_RS00385 PF02754 Cysteine-rich domain CJ12661_RS00390 PF02652 L-lactate permease CJ12661_RS00395 PF03498 Cytolethal distending toxin A/C domain CJ12661_RS00400 PF03372 Endonuclease/Exonuclease/phosphatase family CJ12661_RS00405 PF03498 Cytolethal distending toxin A/C domain CJ12661_RS00415 PF01654 Cytochrome bd terminal oxidase subunit I CJ12661_RS00420 PF02322 Cytochrome bd terminal oxidase subunit II CJ12661_RS00425 PF01177 Asp/Glu/Hydantoin racemase CJ12661_RS00430 PF03167 Uracil DNA glycosylase superfamily CJ12661_RS00435 PF10415 Fumarase C C-terminus CJ12661_RS00435 PF00206 Lyase CJ12661_RS00475 PF00829 Ribosomal prokaryotic L21 protein CJ12661_RS00480 PF01016 Ribosomal L27 protein CJ12661_RS00485 PF01018 GTP1/OBG CJ12661_RS00485 PF01926 50S ribosome-binding GTPase CJ12661_RS00490 PF00696 Amino acid kinase family CJ12661_RS00495 PF02911 Formyl transferase, C-terminal domain CJ12661_RS00495 PF00551 Formyl transferase CJ12661_RS00500 PF03099 Biotin/lipoate A/B protein ligase family CJ12661_RS00500 PF02237 Biotin protein ligase C terminal domain CJ12661_RS00500 PF08279 HTH domain CJ12661_RS00505 PF13614 AAA domain CJ12661_RS00510 PF17762 HTH domain found in ParB protein CJ12661_RS00510 PF02195 ParB-like nuclease domain CJ12661_RS00520 PF00430 ATP synthase B/B' CF(0) CJ12661_RS00525 PF00213 ATP synthase delta (OSCP) subunit CJ12661_RS00530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ12661_RS00530 PF00306 ATP synthase alpha/beta chain, C terminal domain CJ12661_RS00530 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJ12661_RS00535 PF00231 ATP synthase CJ12661_RS00540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ12661_RS00540 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJ12661_RS00545 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJ12661_RS00550 PF01618 MotA/TolQ/ExbB proton channel family CJ12661_RS00555 PF02472 Biopolymer transport protein ExbD/TolR CJ12661_RS00570 PF00223 Photosystem I psaA/psaB protein CJ12661_RS00570 PF00691 OmpA family CJ12661_RS00580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJ12661_RS00585 PF00698 Acyl transferase domain CJ12661_RS00590 PF01048 Phosphorylase superfamily CJ12661_RS00595 PF01171 PP-loop family CJ12661_RS00610 PF02130 Uncharacterized protein family UPF0054 CJ12661_RS00620 PF01207 Dihydrouridine synthase (Dus) CJ12661_RS00630 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJ12661_RS00635 PF02590 Predicted SPOUT methyltransferase CJ12661_RS00640 PF17848 Acetyl-coA carboxylase zinc finger domain CJ12661_RS00640 PF01039 Carboxyl transferase domain CJ12661_RS00645 PF00459 Inositol monophosphatase family CJ12661_RS00650 PF07244 Surface antigen variable number repeat CJ12661_RS00650 PF01103 Surface antigen CJ12661_RS00665 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CJ12661_RS00675 PF00288 GHMP kinases N terminal domain CJ12661_RS00685 PF00009 Elongation factor Tu GTP binding domain CJ12661_RS00685 PF04760 Translation initiation factor IF-2, N-terminal region CJ12661_RS00685 PF11987 Translation-initiation factor 2 CJ12661_RS00690 PF02033 Ribosome-binding factor A CJ12661_RS00695 PF02576 RimP N-terminal domain CJ12661_RS00695 PF17384 RimP C-terminal SH3 domain CJ12661_RS00700 PF07728 AAA domain (dynein-related subfamily) CJ12661_RS00700 PF12102 Domain of unknown function (DUF3578) CJ12661_RS00710 PF00950 ABC 3 transport family CJ12661_RS00715 PF00005 ABC transporter CJ12661_RS00735 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ12661_RS00740 PF00085 Thioredoxin CJ12661_RS00745 PF02021 Uncharacterised protein family UPF0102 CJ12661_RS00750 PF00742 Homoserine dehydrogenase CJ12661_RS00750 PF01842 ACT domain CJ12661_RS00750 PF03447 Homoserine dehydrogenase, NAD binding domain CJ12661_RS00755 PF00155 Aminotransferase class I and II CJ12661_RS00770 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJ12661_RS00770 PF00588 SpoU rRNA Methylase family CJ12661_RS00775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ12661_RS00780 PF01197 Ribosomal protein L31 CJ12661_RS00785 PF04452 RNA methyltransferase CJ12661_RS00810 PF04055 Radical SAM superfamily CJ12661_RS00810 PF06463 Molybdenum Cofactor Synthesis C CJ12661_RS00835 PF02659 Putative manganese efflux pump CJ12661_RS00850 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJ12661_RS00850 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJ12661_RS00855 PF03435 Saccharopine dehydrogenase NADP binding domain CJ12661_RS00855 PF16653 Saccharopine dehydrogenase C-terminal domain CJ12661_RS00860 PF00005 ABC transporter CJ12661_RS00860 PF08402 TOBE domain CJ12661_RS00870 PF13416 Bacterial extracellular solute-binding protein CJ12661_RS00880 PF05992 SbmA/BacA-like family CJ12661_RS00885 PF00571 CBS domain CJ12661_RS00885 PF01595 Cyclin M transmembrane N-terminal domain CJ12661_RS00885 PF03471 Transporter associated domain CJ12661_RS00895 PF03831 PhnA domain CJ12661_RS00895 PF08274 PhnA Zinc-Ribbon CJ12661_RS00900 PF03741 Integral membrane protein TerC family CJ12661_RS00905 PF00551 Formyl transferase CJ12661_RS00910 PF01256 Carbohydrate kinase CJ12661_RS00910 PF03853 YjeF-related protein N-terminus CJ12661_RS00920 PF01078 Magnesium chelatase, subunit ChlI CJ12661_RS00920 PF13335 Magnesium chelatase, subunit ChlI C-terminal CJ12661_RS00925 PF01327 Polypeptide deformylase CJ12661_RS00930 PF00574 Clp protease CJ12661_RS00935 PF05697 Bacterial trigger factor protein (TF) CJ12661_RS00935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJ12661_RS00935 PF05698 Bacterial trigger factor protein (TF) C-terminus CJ12661_RS00940 PF01227 GTP cyclohydrolase I CJ12661_RS00945 PF18269 T3SS EscN ATPase C-terminal domain CJ12661_RS00945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ12661_RS00950 PF00156 Phosphoribosyl transferase domain CJ12661_RS00955 PF05173 Dihydrodipicolinate reductase, C-terminus CJ12661_RS00955 PF01113 Dihydrodipicolinate reductase, N-terminus CJ12661_RS00960 PF01661 Macro domain CJ12661_RS00960 PF12002 MgsA AAA+ ATPase C terminal CJ12661_RS00960 PF16193 AAA C-terminal domain CJ12661_RS00960 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJ12661_RS00985 PF03600 Citrate transporter CJ12661_RS00990 PF03169 OPT oligopeptide transporter protein CJ12661_RS00995 PF02673 Bacitracin resistance protein BacA CJ12661_RS01000 PF03129 Anticodon binding domain CJ12661_RS01000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJ12661_RS01000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJ12661_RS01005 PF00707 Translation initiation factor IF-3, C-terminal domain CJ12661_RS01005 PF05198 Translation initiation factor IF-3, N-terminal domain CJ12661_RS01055 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJ12661_RS01055 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJ12661_RS01065 PF00696 Amino acid kinase family CJ12661_RS01070 PF00202 Aminotransferase class-III CJ12661_RS01080 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12661_RS01085 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CJ12661_RS01085 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CJ12661_RS01090 PF00268 Ribonucleotide reductase, small chain CJ12661_RS01100 PF00156 Phosphoribosyl transferase domain CJ12661_RS01105 PF01765 Ribosome recycling factor CJ12661_RS01110 PF03840 Preprotein translocase SecG subunit CJ12661_RS01115 PF01027 Inhibitor of apoptosis-promoting Bax1 CJ12661_RS01120 PF00484 Carbonic anhydrase CJ12661_RS01125 PF00924 Mechanosensitive ion channel CJ12661_RS01130 PF04324 BFD-like [2Fe-2S] binding domain CJ12661_RS01130 PF01106 NifU-like domain CJ12661_RS01130 PF01592 NifU-like N terminal domain CJ12661_RS01135 PF00266 Aminotransferase class-V CJ12661_RS01140 PF01814 Hemerythrin HHE cation binding domain CJ12661_RS01150 PF01632 Ribosomal protein L35 CJ12661_RS01155 PF00453 Ribosomal protein L20 CJ12661_RS01160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12661_RS01160 PF00672 HAMP domain CJ12661_RS01160 PF02743 Cache domain CJ12661_RS01175 PF00083 Sugar (and other) transporter CJ12661_RS01185 PF01967 MoaC family CJ12661_RS01190 PF04359 Protein of unknown function (DUF493) CJ12661_RS01200 PF03372 Endonuclease/Exonuclease/phosphatase family CJ12661_RS01205 PF08019 Phosphoethanolamine transferase EptA/EptB CJ12661_RS01205 PF00884 Sulfatase CJ12661_RS01210 PF01219 Prokaryotic diacylglycerol kinase CJ12661_RS01220 PF04909 Amidohydrolase CJ12661_RS01230 PF01209 ubiE/COQ5 methyltransferase family CJ12661_RS01235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12661_RS01235 PF00672 HAMP domain CJ12661_RS01235 PF02743 Cache domain CJ12661_RS01240 PF02535 ZIP Zinc transporter CJ12661_RS01245 PF18364 Molybdopterin oxidoreductase N-terminal domain CJ12661_RS01245 PF00384 Molybdopterin oxidoreductase CJ12661_RS01245 PF01568 Molydopterin dinucleotide binding domain CJ12661_RS01265 PF01145 SPFH domain / Band 7 family CJ12661_RS01270 PF01063 Amino-transferase class IV CJ12661_RS01275 PF01361 Tautomerase enzyme CJ12661_RS01280 PF00578 AhpC/TSA family CJ12661_RS01285 PF02677 Epoxyqueuosine reductase QueH CJ12661_RS01290 PF07977 FabA-like domain CJ12661_RS01295 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CJ12661_RS01295 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12661_RS01300 PF07724 AAA domain (Cdc48 subfamily) CJ12661_RS01300 PF06689 ClpX C4-type zinc finger CJ12661_RS01300 PF10431 C-terminal, D2-small domain, of ClpB protein CJ12661_RS01315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ12661_RS01315 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJ12661_RS01315 PF02142 MGS-like domain CJ12661_RS01325 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJ12661_RS01335 PF01584 CheW-like domain CJ12661_RS01340 PF01627 Hpt domain CJ12661_RS01340 PF00072 Response regulator receiver domain CJ12661_RS01340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12661_RS01340 PF02895 Signal transducing histidine kinase, homodimeric domain CJ12661_RS01340 PF01584 CheW-like domain CJ12661_RS01345 PF00072 Response regulator receiver domain CJ12661_RS01345 PF01584 CheW-like domain CJ12661_RS01355 PF01272 Transcription elongation factor, GreA/GreB, C-term CJ12661_RS01355 PF03449 Transcription elongation factor, N-terminal CJ12661_RS01360 PF02684 Lipid-A-disaccharide synthetase CJ12661_RS01375 PF01555 DNA methylase CJ12661_RS01375 PF18273 Type III R-M EcoP15I C-terminal domain CJ12661_RS01380 PF04851 Type III restriction enzyme, res subunit CJ12661_RS01380 PF08774 VRR-NUC domain CJ12661_RS01395 PF07690 Major Facilitator Superfamily CJ12661_RS01400 PF01975 Survival protein SurE CJ12661_RS01410 PF13673 Acetyltransferase (GNAT) domain CJ12661_RS01415 PF02261 Aspartate decarboxylase CJ12661_RS01420 PF02569 Pantoate-beta-alanine ligase CJ12661_RS01425 PF02548 Ketopantoate hydroxymethyltransferase CJ12661_RS01430 PF00905 Penicillin binding protein transpeptidase domain CJ12661_RS01440 PF00005 ABC transporter CJ12661_RS01440 PF12857 TOBE-like domain CJ12661_RS01440 PF17850 CysA C-terminal regulatory domain CJ12661_RS01445 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS01465 PF04301 Protein of unknown function (DUF452) CJ12661_RS01470 PF00155 Aminotransferase class I and II CJ12661_RS01475 PF00202 Aminotransferase class-III CJ12661_RS01485 PF00893 Small Multidrug Resistance protein CJ12661_RS01495 PF14693 Ribosomal protein TL5, C-terminal domain CJ12661_RS01495 PF01386 Ribosomal L25p family CJ12661_RS01500 PF01195 Peptidyl-tRNA hydrolase CJ12661_RS01510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJ12661_RS01510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJ12661_RS01520 PF01817 Chorismate mutase type II CJ12661_RS01520 PF01842 ACT domain CJ12661_RS01520 PF00800 Prephenate dehydratase CJ12661_RS01525 PF00155 Aminotransferase class I and II CJ12661_RS01530 PF01514 Secretory protein of YscJ/FliF family CJ12661_RS01530 PF08345 Flagellar M-ring protein C-terminal CJ12661_RS01535 PF14841 FliG middle domain CJ12661_RS01535 PF14842 FliG N-terminal domain CJ12661_RS01535 PF01706 FliG C-terminal domain CJ12661_RS01545 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CJ12661_RS01545 PF02779 Transketolase, pyrimidine binding domain CJ12661_RS01545 PF02780 Transketolase, C-terminal domain CJ12661_RS01560 PF01209 ubiE/COQ5 methyltransferase family CJ12661_RS01565 PF02601 Exonuclease VII, large subunit CJ12661_RS01565 PF13742 OB-fold nucleic acid binding domain CJ12661_RS01570 PF00266 Aminotransferase class-V CJ12661_RS01575 PF01042 Endoribonuclease L-PSP CJ12661_RS01580 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJ12661_RS01580 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJ12661_RS01585 PF02504 Fatty acid synthesis protein CJ12661_RS01590 PF01783 Ribosomal L32p protein family CJ12661_RS01600 PF00334 Nucleoside diphosphate kinase CJ12661_RS01605 PF00037 4Fe-4S binding domain CJ12661_RS01610 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJ12661_RS01610 PF00578 AhpC/TSA family CJ12661_RS01615 PF01312 FlhB HrpN YscU SpaS Family CJ12661_RS01620 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJ12661_RS01620 PF00691 OmpA family CJ12661_RS01625 PF01618 MotA/TolQ/ExbB proton channel family CJ12661_RS01630 PF01367 5'-3' exonuclease, C-terminal SAM fold CJ12661_RS01630 PF01612 3'-5' exonuclease CJ12661_RS01630 PF00476 DNA polymerase family A CJ12661_RS01630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJ12661_RS01635 PF00083 Sugar (and other) transporter CJ12661_RS01635 PF07690 Major Facilitator Superfamily CJ12661_RS01640 PF01156 Inosine-uridine preferring nucleoside hydrolase CJ12661_RS01645 PF09335 SNARE associated Golgi protein CJ12661_RS01650 PF17760 UvrA interaction domain CJ12661_RS01650 PF17755 UvrA DNA-binding domain CJ12661_RS01650 PF00005 ABC transporter CJ12661_RS01655 PF01925 Sulfite exporter TauE/SafE CJ12661_RS01665 PF04715 Anthranilate synthase component I, N terminal region CJ12661_RS01665 PF00425 chorismate binding enzyme CJ12661_RS01670 PF00591 Glycosyl transferase family, a/b domain CJ12661_RS01670 PF02885 Glycosyl transferase family, helical bundle domain CJ12661_RS01670 PF00117 Glutamine amidotransferase class-I CJ12661_RS01675 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CJ12661_RS01680 PF00291 Pyridoxal-phosphate dependent enzyme CJ12661_RS01685 PF00290 Tryptophan synthase alpha chain CJ12661_RS01695 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJ12661_RS01695 PF04509 CheC-like family CJ12661_RS01710 PF00037 4Fe-4S binding domain CJ12661_RS01715 PF00486 Transcriptional regulatory protein, C terminal CJ12661_RS01715 PF00072 Response regulator receiver domain CJ12661_RS01725 PF02660 Glycerol-3-phosphate acyltransferase CJ12661_RS01730 PF00034 Cytochrome c CJ12661_RS01730 PF03150 Di-haem cytochrome c peroxidase CJ12661_RS01735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJ12661_RS01735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJ12661_RS01735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJ12661_RS01735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJ12661_RS01740 PF01252 Signal peptidase (SPase) II CJ12661_RS01745 PF03653 Uncharacterised protein family (UPF0093) CJ12661_RS01750 PF06969 HemN C-terminal domain CJ12661_RS01750 PF04055 Radical SAM superfamily CJ12661_RS01760 PF02321 Outer membrane efflux protein CJ12661_RS01765 PF00873 AcrB/AcrD/AcrF family CJ12661_RS01770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ12661_RS01770 PF00529 HlyD membrane-fusion protein of T1SS CJ12661_RS01785 PF01165 Ribosomal protein S21 CJ12661_RS01800 PF03738 Glutathionylspermidine synthase preATP-grasp CJ12661_RS01805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJ12661_RS01805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJ12661_RS01810 PF04461 Protein of unknown function (DUF520) CJ12661_RS01825 PF00004 ATPase family associated with various cellular activities (AAA) CJ12661_RS01825 PF17862 AAA+ lid domain CJ12661_RS01825 PF01434 Peptidase family M41 CJ12661_RS01825 PF06480 FtsH Extracellular CJ12661_RS01835 PF00174 Oxidoreductase molybdopterin binding domain CJ12661_RS01840 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJ12661_RS01845 PF01029 NusB family CJ12661_RS01850 PF00885 6,7-dimethyl-8-ribityllumazine synthase CJ12661_RS01855 PF00793 DAHP synthetase I family CJ12661_RS01865 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CJ12661_RS01865 PF01926 50S ribosome-binding GTPase CJ12661_RS01870 PF01202 Shikimate kinase CJ12661_RS01875 PF00579 tRNA synthetases class I (W and Y) CJ12661_RS01880 PF02403 Seryl-tRNA synthetase N-terminal domain CJ12661_RS01880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJ12661_RS01895 PF00391 PEP-utilising enzyme, mobile domain CJ12661_RS01895 PF00224 Pyruvate kinase, barrel domain CJ12661_RS01895 PF02887 Pyruvate kinase, alpha/beta domain CJ12661_RS01900 PF06039 Malate:quinone oxidoreductase (Mqo) CJ12661_RS01905 PF03309 Type III pantothenate kinase CJ12661_RS01915 PF15437 Plasminogen-binding protein pgbA C-terminal CJ12661_RS01925 PF02686 Glu-tRNAGln amidotransferase C subunit CJ12661_RS01935 PF01475 Ferric uptake regulator family CJ12661_RS01940 PF00152 tRNA synthetases class II (D, K and N) CJ12661_RS01940 PF01336 OB-fold nucleic acid binding domain CJ12661_RS01945 PF00464 Serine hydroxymethyltransferase CJ12661_RS01960 PF08501 Shikimate dehydrogenase substrate binding domain CJ12661_RS01970 PF01790 Prolipoprotein diacylglyceryl transferase CJ12661_RS01975 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CJ12661_RS01980 PF00890 FAD binding domain CJ12661_RS01980 PF02910 Fumarate reductase flavoprotein C-term CJ12661_RS01985 PF13085 2Fe-2S iron-sulfur cluster binding domain CJ12661_RS01985 PF13183 4Fe-4S dicluster domain CJ12661_RS01990 PF10396 GTP-binding protein TrmE N-terminus CJ12661_RS01990 PF12631 MnmE helical domain CJ12661_RS01990 PF01926 50S ribosome-binding GTPase CJ12661_RS02010 PF00732 GMC oxidoreductase CJ12661_RS02010 PF05199 GMC oxidoreductase CJ12661_RS02050 PF12848 ABC transporter CJ12661_RS02050 PF00005 ABC transporter CJ12661_RS02065 PF09186 Domain of unknown function (DUF1949) CJ12661_RS02065 PF01205 Uncharacterized protein family UPF0029 CJ12661_RS02105 PF08245 Mur ligase middle domain CJ12661_RS02110 PF00953 Glycosyl transferase family 4 CJ12661_RS02115 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CJ12661_RS02115 PF01676 Metalloenzyme superfamily CJ12661_RS02135 PF00890 FAD binding domain CJ12661_RS02135 PF02910 Fumarate reductase flavoprotein C-term CJ12661_RS02140 PF13085 2Fe-2S iron-sulfur cluster binding domain CJ12661_RS02140 PF13183 4Fe-4S dicluster domain CJ12661_RS02145 PF02754 Cysteine-rich domain CJ12661_RS02150 PF03070 TENA/THI-4/PQQC family CJ12661_RS02155 PF00550 Phosphopantetheine attachment site CJ12661_RS02160 PF02801 Beta-ketoacyl synthase, C-terminal domain CJ12661_RS02160 PF00109 Beta-ketoacyl synthase, N-terminal domain CJ12661_RS02165 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CJ12661_RS02170 PF07715 TonB-dependent Receptor Plug Domain CJ12661_RS02170 PF00593 TonB dependent receptor CJ12661_RS02175 PF00293 NUDIX domain CJ12661_RS02180 PF02743 Cache domain CJ12661_RS02180 PF00672 HAMP domain CJ12661_RS02180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12661_RS02190 PF00830 Ribosomal L28 family CJ12661_RS02195 PF00834 Ribulose-phosphate 3 epimerase family CJ12661_RS02200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJ12661_RS02200 PF11490 DNA polymerase III polC-type N-terminus II CJ12661_RS02200 PF14480 DNA polymerase III polC-type N-terminus I CJ12661_RS02200 PF00929 Exonuclease CJ12661_RS02200 PF14579 Helix-hairpin-helix motif CJ12661_RS02200 PF02811 PHP domain CJ12661_RS02200 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJ12661_RS02205 PF01964 Radical SAM ThiC family CJ12661_RS02225 PF04028 Domain of unknown function (DUF374) CJ12661_RS02230 PF00919 Uncharacterized protein family UPF0004 CJ12661_RS02230 PF01938 TRAM domain CJ12661_RS02230 PF04055 Radical SAM superfamily CJ12661_RS02240 PF08529 NusA N-terminal domain CJ12661_RS02240 PF13184 NusA-like KH domain CJ12661_RS02250 PF04055 Radical SAM superfamily CJ12661_RS02255 PF05193 Peptidase M16 inactive domain CJ12661_RS02260 PF00271 Helicase conserved C-terminal domain CJ12661_RS02260 PF04851 Type III restriction enzyme, res subunit CJ12661_RS02265 PF01152 Bacterial-like globin CJ12661_RS02275 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS02280 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS02285 PF00005 ABC transporter CJ12661_RS02310 PF03143 Elongation factor Tu C-terminal domain CJ12661_RS02310 PF03144 Elongation factor Tu domain 2 CJ12661_RS02310 PF00009 Elongation factor Tu GTP binding domain CJ12661_RS02315 PF00471 Ribosomal protein L33 CJ12661_RS02330 PF02357 Transcription termination factor nusG CJ12661_RS02335 PF00298 Ribosomal protein L11, RNA binding domain CJ12661_RS02335 PF03946 Ribosomal protein L11, N-terminal domain CJ12661_RS02340 PF00687 Ribosomal protein L1p/L10e family CJ12661_RS02345 PF00466 Ribosomal protein L10 CJ12661_RS02350 PF16320 Ribosomal protein L7/L12 dimerisation domain CJ12661_RS02350 PF00542 Ribosomal protein L7/L12 C-terminal domain CJ12661_RS02355 PF04565 RNA polymerase Rpb2, domain 3 CJ12661_RS02355 PF04561 RNA polymerase Rpb2, domain 2 CJ12661_RS02355 PF10385 RNA polymerase beta subunit external 1 domain CJ12661_RS02355 PF00562 RNA polymerase Rpb2, domain 6 CJ12661_RS02355 PF04560 RNA polymerase Rpb2, domain 7 CJ12661_RS02355 PF04563 RNA polymerase beta subunit CJ12661_RS02360 PF04997 RNA polymerase Rpb1, domain 1 CJ12661_RS02360 PF00623 RNA polymerase Rpb1, domain 2 CJ12661_RS02360 PF04998 RNA polymerase Rpb1, domain 5 CJ12661_RS02360 PF05000 RNA polymerase Rpb1, domain 4 CJ12661_RS02360 PF04983 RNA polymerase Rpb1, domain 3 CJ12661_RS02370 PF00701 Dihydrodipicolinate synthetase family CJ12661_RS02380 PF08666 SAF domain CJ12661_RS02380 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJ12661_RS02385 PF07690 Major Facilitator Superfamily CJ12661_RS02395 PF07690 Major Facilitator Superfamily CJ12661_RS02410 PF00171 Aldehyde dehydrogenase family CJ12661_RS02415 PF00164 Ribosomal protein S12/S23 CJ12661_RS02420 PF00177 Ribosomal protein S7p/S5e CJ12661_RS02425 PF03144 Elongation factor Tu domain 2 CJ12661_RS02425 PF00679 Elongation factor G C-terminus CJ12661_RS02425 PF14492 Elongation Factor G, domain II CJ12661_RS02425 PF03764 Elongation factor G, domain IV CJ12661_RS02425 PF00009 Elongation factor Tu GTP binding domain CJ12661_RS02455 PF00218 Indole-3-glycerol phosphate synthase CJ12661_RS02470 PF00909 Ammonium Transporter Family CJ12661_RS02475 PF00762 Ferrochelatase CJ12661_RS02480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJ12661_RS02480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJ12661_RS02485 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ12661_RS02490 PF01411 tRNA synthetases class II (A) CJ12661_RS02490 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJ12661_RS02490 PF02272 DHHA1 domain CJ12661_RS02495 PF02545 Maf-like protein CJ12661_RS02500 PF00912 Transglycosylase CJ12661_RS02500 PF00905 Penicillin binding protein transpeptidase domain CJ12661_RS02500 PF17092 Penicillin-binding protein OB-like domain CJ12661_RS02505 PF00004 ATPase family associated with various cellular activities (AAA) CJ12661_RS02505 PF07724 AAA domain (Cdc48 subfamily) CJ12661_RS02505 PF17871 AAA lid domain CJ12661_RS02505 PF02861 Clp amino terminal domain, pathogenicity island component CJ12661_RS02505 PF10431 C-terminal, D2-small domain, of ClpB protein CJ12661_RS02510 PF02583 Metal-sensitive transcriptional repressor CJ12661_RS02515 PF03572 Peptidase family S41 CJ12661_RS02515 PF13180 PDZ domain CJ12661_RS02520 PF01259 SAICAR synthetase CJ12661_RS02525 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CJ12661_RS02540 PF01553 Acyltransferase CJ12661_RS02545 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJ12661_RS02550 PF00183 Hsp90 protein CJ12661_RS02550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12661_RS02555 PF00581 Rhodanese-like domain CJ12661_RS02575 PF02049 Flagellar hook-basal body complex protein FliE CJ12661_RS02580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12661_RS02580 PF00460 Flagella basal body rod protein CJ12661_RS02585 PF00460 Flagella basal body rod protein CJ12661_RS02600 PF03971 Monomeric isocitrate dehydrogenase CJ12661_RS02605 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJ12661_RS02605 PF00056 lactate/malate dehydrogenase, NAD binding domain CJ12661_RS02610 PF08442 ATP-grasp domain CJ12661_RS02610 PF00549 CoA-ligase CJ12661_RS02615 PF00549 CoA-ligase CJ12661_RS02615 PF02629 CoA binding domain CJ12661_RS02625 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CJ12661_RS02625 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CJ12661_RS02625 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CJ12661_RS02630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ12661_RS02650 PF00348 Polyprenyl synthetase CJ12661_RS02655 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CJ12661_RS02655 PF01488 Shikimate / quinate 5-dehydrogenase CJ12661_RS02655 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CJ12661_RS02660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJ12661_RS02660 PF04073 Aminoacyl-tRNA editing domain CJ12661_RS02660 PF03129 Anticodon binding domain CJ12661_RS02670 PF03900 Porphobilinogen deaminase, C-terminal domain CJ12661_RS02670 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CJ12661_RS02675 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJ12661_RS02685 PF02465 Flagellar hook-associated protein 2 N-terminus CJ12661_RS02685 PF07195 Flagellar hook-associated protein 2 C-terminus CJ12661_RS02685 PF07196 Flagellin hook IN motif CJ12661_RS02690 PF02561 Flagellar protein FliS CJ12661_RS02705 PF01132 Elongation factor P (EF-P) OB domain CJ12661_RS02705 PF08207 Elongation factor P (EF-P) KOW-like domain CJ12661_RS02705 PF09285 Elongation factor P, C-terminal CJ12661_RS02740 PF00171 Aldehyde dehydrogenase family CJ12661_RS02745 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ12661_RS02760 PF00772 DnaB-like helicase N terminal domain CJ12661_RS02760 PF03796 DnaB-like helicase C terminal domain CJ12661_RS02805 PF00925 GTP cyclohydrolase II CJ12661_RS02805 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJ12661_RS02810 PF09424 Yqey-like protein CJ12661_RS02815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ12661_RS02815 PF00205 Thiamine pyrophosphate enzyme, central domain CJ12661_RS02815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJ12661_RS02820 PF10369 Small subunit of acetolactate synthase CJ12661_RS02825 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CJ12661_RS02825 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12661_RS02830 PF02547 Queuosine biosynthesis protein CJ12661_RS02835 PF00902 Sec-independent protein translocase protein (TatC) CJ12661_RS02840 PF02416 mttA/Hcf106 family CJ12661_RS02845 PF06969 HemN C-terminal domain CJ12661_RS02845 PF04055 Radical SAM superfamily CJ12661_RS02850 PF00293 NUDIX domain CJ12661_RS02855 PF00696 Amino acid kinase family CJ12661_RS02855 PF01842 ACT domain CJ12661_RS02855 PF13840 ACT domain CJ12661_RS02870 PF00809 Pterin binding enzyme CJ12661_RS02875 PF03120 NAD-dependent DNA ligase OB-fold domain CJ12661_RS02875 PF01653 NAD-dependent DNA ligase adenylation domain CJ12661_RS02875 PF00533 BRCA1 C Terminus (BRCT) domain CJ12661_RS02890 PF06574 FAD synthetase CJ12661_RS02890 PF01687 Riboflavin kinase CJ12661_RS02895 PF13847 Methyltransferase domain CJ12661_RS02910 PF03458 UPF0126 domain CJ12661_RS02920 PF00730 HhH-GPD superfamily base excision DNA repair protein CJ12661_RS02920 PF10576 Iron-sulfur binding domain of endonuclease III CJ12661_RS02920 PF00633 Helix-hairpin-helix motif CJ12661_RS02930 PF01116 Fructose-bisphosphate aldolase class-II CJ12661_RS02950 PF00209 Sodium:neurotransmitter symporter family CJ12661_RS02955 PF03475 3-alpha domain CJ12661_RS02955 PF03473 MOSC domain CJ12661_RS02960 PF11412 Disulphide bond corrector protein DsbC CJ12661_RS02960 PF00085 Thioredoxin CJ12661_RS02960 PF02683 Cytochrome C biogenesis protein transmembrane region CJ12661_RS02965 PF03976 Polyphosphate kinase 2 (PPK2) CJ12661_RS02970 PF07687 Peptidase dimerisation domain CJ12661_RS02970 PF01546 Peptidase family M20/M25/M40 CJ12661_RS02975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ12661_RS02980 PF12704 MacB-like periplasmic core domain CJ12661_RS02980 PF02687 FtsX-like permease family CJ12661_RS02980 PF00005 ABC transporter CJ12661_RS02985 PF02321 Outer membrane efflux protein CJ12661_RS03000 PF03062 MBOAT, membrane-bound O-acyltransferase family CJ12661_RS03005 PF00210 Ferritin-like domain CJ12661_RS03010 PF12849 PBP superfamily domain CJ12661_RS03015 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS03020 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS03025 PF00005 ABC transporter CJ12661_RS03030 PF01554 MatE CJ12661_RS03045 PF00708 Acylphosphatase CJ12661_RS03045 PF17788 HypF Kae1-like domain CJ12661_RS03045 PF01300 Telomere recombination CJ12661_RS03045 PF07503 HypF finger CJ12661_RS03050 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJ12661_RS03055 PF01455 HupF/HypC family CJ12661_RS03060 PF01924 Hydrogenase formation hypA family CJ12661_RS03065 PF00586 AIR synthase related protein, N-terminal domain CJ12661_RS03065 PF02769 AIR synthase related protein, C-terminal domain CJ12661_RS03070 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CJ12661_RS03085 PF00773 RNB domain CJ12661_RS03090 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJ12661_RS03090 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJ12661_RS03100 PF02481 DNA recombination-mediator protein A CJ12661_RS03100 PF17782 DprA winged helix domain CJ12661_RS03105 PF03652 Holliday junction resolvase CJ12661_RS03110 PF01189 16S rRNA methyltransferase RsmB/F CJ12661_RS03110 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CJ12661_RS03110 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CJ12661_RS03115 PF01625 Peptide methionine sulfoxide reductase CJ12661_RS03120 PF00719 Inorganic pyrophosphatase CJ12661_RS03130 PF02938 GAD domain CJ12661_RS03130 PF00152 tRNA synthetases class II (D, K and N) CJ12661_RS03130 PF01336 OB-fold nucleic acid binding domain CJ12661_RS03135 PF01513 ATP-NAD kinase CJ12661_RS03140 PF13476 AAA domain CJ12661_RS03145 PF00990 Diguanylate cyclase, GGDEF domain CJ12661_RS03145 PF00072 Response regulator receiver domain CJ12661_RS03150 PF01026 TatD related DNase CJ12661_RS03155 PF01476 LysM domain CJ12661_RS03155 PF00877 NlpC/P60 family CJ12661_RS03160 PF03330 Lytic transglycolase CJ12661_RS03160 PF05036 Sporulation related domain CJ12661_RS03180 PF01926 50S ribosome-binding GTPase CJ12661_RS03190 PF03717 Penicillin-binding Protein dimerisation domain CJ12661_RS03190 PF00905 Penicillin binding protein transpeptidase domain CJ12661_RS03195 PF00557 Metallopeptidase family M24 CJ12661_RS03195 PF01321 Creatinase/Prolidase N-terminal domain CJ12661_RS03220 PF01926 50S ribosome-binding GTPase CJ12661_RS03220 PF07650 KH domain CJ12661_RS03225 PF10431 C-terminal, D2-small domain, of ClpB protein CJ12661_RS03225 PF07724 AAA domain (Cdc48 subfamily) CJ12661_RS03230 PF00227 Proteasome subunit CJ12661_RS03235 PF01281 Ribosomal protein L9, N-terminal domain CJ12661_RS03235 PF03948 Ribosomal protein L9, C-terminal domain CJ12661_RS03240 PF00764 Arginosuccinate synthase CJ12661_RS03245 PF01479 S4 domain CJ12661_RS03250 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CJ12661_RS03255 PF00005 ABC transporter CJ12661_RS03255 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ12661_RS03260 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJ12661_RS03260 PF04552 Sigma-54, DNA binding domain CJ12661_RS03260 PF04963 Sigma-54 factor, core binding domain CJ12661_RS03275 PF03814 Potassium-transporting ATPase A subunit CJ12661_RS03285 PF02669 K+-transporting ATPase, c chain CJ12661_RS03290 PF00512 His Kinase A (phospho-acceptor) domain CJ12661_RS03290 PF13493 Domain of unknown function (DUF4118) CJ12661_RS03290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12661_RS03290 PF02702 Osmosensitive K+ channel His kinase sensor domain CJ12661_RS03295 PF02151 UvrB/uvrC motif CJ12661_RS03295 PF12344 Ultra-violet resistance protein B CJ12661_RS03295 PF04851 Type III restriction enzyme, res subunit CJ12661_RS03295 PF00271 Helicase conserved C-terminal domain CJ12661_RS03295 PF17757 UvrB interaction domain CJ12661_RS03315 PF18074 Primosomal protein N C-terminal domain CJ12661_RS03315 PF17764 3′ DNA-binding domain (3′BD) CJ12661_RS03315 PF00271 Helicase conserved C-terminal domain CJ12661_RS03315 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CJ12661_RS03315 PF00270 DEAD/DEAH box helicase CJ12661_RS03325 PF04551 GcpE protein CJ12661_RS03330 PF02107 Flagellar L-ring protein CJ12661_RS03335 PF01515 Phosphate acetyl/butaryl transferase CJ12661_RS03340 PF00871 Acetokinase family CJ12661_RS03355 PF01795 MraW methylase family CJ12661_RS03360 PF13145 PPIC-type PPIASE domain CJ12661_RS03365 PF02491 SHS2 domain inserted in FTSA CJ12661_RS03370 PF00091 Tubulin/FtsZ family, GTPase domain CJ12661_RS03370 PF12327 FtsZ family, C-terminal domain CJ12661_RS03375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12661_RS03375 PF00460 Flagella basal body rod protein CJ12661_RS03380 PF00460 Flagella basal body rod protein CJ12661_RS03380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12661_RS03385 PF03951 Glutamine synthetase, beta-Grasp domain CJ12661_RS03385 PF00120 Glutamine synthetase, catalytic domain CJ12661_RS03395 PF01136 Peptidase family U32 CJ12661_RS03400 PF00731 AIR carboxylase CJ12661_RS03410 PF02091 Glycyl-tRNA synthetase alpha subunit CJ12661_RS03415 PF01784 NIF3 (NGG1p interacting factor 3) CJ12661_RS03425 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CJ12661_RS03425 PF02390 Putative methyltransferase CJ12661_RS03430 PF00849 RNA pseudouridylate synthase CJ12661_RS03435 PF00448 SRP54-type protein, GTPase domain CJ12661_RS03435 PF02881 SRP54-type protein, helical bundle domain CJ12661_RS03435 PF02978 Signal peptide binding domain CJ12661_RS03440 PF00886 Ribosomal protein S16 CJ12661_RS03450 PF05239 PRC-barrel domain CJ12661_RS03450 PF01782 RimM N-terminal domain CJ12661_RS03455 PF01746 tRNA (Guanine-1)-methyltransferase CJ12661_RS03460 PF01245 Ribosomal protein L19 CJ12661_RS03465 PF00576 HIUase/Transthyretin family CJ12661_RS03470 PF01474 Class-II DAHP synthetase family CJ12661_RS03475 PF03960 ArsC family CJ12661_RS03485 PF14579 Helix-hairpin-helix motif CJ12661_RS03485 PF02811 PHP domain CJ12661_RS03485 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJ12661_RS03485 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJ12661_RS03490 PF01168 Alanine racemase, N-terminal domain CJ12661_RS03495 PF00669 Bacterial flagellin N-terminal helical region CJ12661_RS03505 PF17827 PrmC N-terminal domain CJ12661_RS03505 PF05175 Methyltransferase small domain CJ12661_RS03510 PF01435 Peptidase family M48 CJ12661_RS03520 PF00994 Probable molybdopterin binding domain CJ12661_RS03525 PF01544 CorA-like Mg2+ transporter protein CJ12661_RS03545 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS03555 PF08402 TOBE domain CJ12661_RS03555 PF00005 ABC transporter CJ12661_RS03565 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ12661_RS03630 PF01025 GrpE CJ12661_RS03635 PF00012 Hsp70 protein CJ12661_RS03655 PF00155 Aminotransferase class I and II CJ12661_RS03660 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12661_RS03660 PF06426 Serine acetyltransferase, N-terminal CJ12661_RS03665 PF17944 Arginine decarboxylase C-terminal helical extension CJ12661_RS03665 PF17810 Arginine decarboxylase helical bundle domain CJ12661_RS03665 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJ12661_RS03670 PF03129 Anticodon binding domain CJ12661_RS03670 PF13393 Histidyl-tRNA synthetase CJ12661_RS03675 PF02223 Thymidylate kinase CJ12661_RS03680 PF01467 Cytidylyltransferase-like CJ12661_RS03685 PF02441 Flavoprotein CJ12661_RS03695 PF03180 NLPA lipoprotein CJ12661_RS03700 PF03180 NLPA lipoprotein CJ12661_RS03705 PF03180 NLPA lipoprotein CJ12661_RS03710 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS03715 PF09383 NIL domain CJ12661_RS03715 PF00005 ABC transporter CJ12661_RS03720 PF10458 Valyl tRNA synthetase tRNA binding arm CJ12661_RS03720 PF08264 Anticodon-binding domain of tRNA CJ12661_RS03720 PF00133 tRNA synthetases class I (I, L, M and V) CJ12661_RS03730 PF13361 UvrD-like helicase C-terminal domain CJ12661_RS03730 PF00580 UvrD/REP helicase N-terminal domain CJ12661_RS03740 PF08534 Redoxin CJ12661_RS03745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ12661_RS03745 PF00384 Molybdopterin oxidoreductase CJ12661_RS03745 PF01568 Molydopterin dinucleotide binding domain CJ12661_RS03750 PF12800 4Fe-4S binding domain CJ12661_RS03750 PF12838 4Fe-4S dicluster domain CJ12661_RS03755 PF12801 4Fe-4S binding domain CJ12661_RS03755 PF13187 4Fe-4S dicluster domain CJ12661_RS03760 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CJ12661_RS03790 PF01743 Poly A polymerase head domain CJ12661_RS03790 PF12627 Probable RNA and SrmB- binding site of polymerase A CJ12661_RS03790 PF13735 tRNA nucleotidyltransferase domain 2 putative CJ12661_RS03795 PF00551 Formyl transferase CJ12661_RS03795 PF01842 ACT domain CJ12661_RS03800 PF00266 Aminotransferase class-V CJ12661_RS03810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12661_RS03810 PF00512 His Kinase A (phospho-acceptor) domain CJ12661_RS03820 PF08245 Mur ligase middle domain CJ12661_RS03820 PF02875 Mur ligase family, glutamate ligase domain CJ12661_RS03835 PF07478 D-ala D-ala ligase C-terminus CJ12661_RS03835 PF01820 D-ala D-ala ligase N-terminus CJ12661_RS03840 PF07499 RuvA, C-terminal domain CJ12661_RS03840 PF01330 RuvA N terminal domain CJ12661_RS03850 PF03023 Lipid II flippase MurJ CJ12661_RS03855 PF01406 tRNA synthetases class I (C) catalytic domain CJ12661_RS03855 PF09190 DALR domain CJ12661_RS03860 PF00005 ABC transporter CJ12661_RS03860 PF00664 ABC transporter transmembrane region CJ12661_RS03865 PF01180 Dihydroorotate dehydrogenase CJ12661_RS03870 PF05193 Peptidase M16 inactive domain CJ12661_RS03870 PF00675 Insulinase (Peptidase family M16) CJ12661_RS03875 PF00701 Dihydrodipicolinate synthetase family CJ12661_RS03890 PF00753 Metallo-beta-lactamase superfamily CJ12661_RS03895 PF02540 NAD synthase CJ12661_RS03900 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CJ12661_RS03905 PF00291 Pyridoxal-phosphate dependent enzyme CJ12661_RS03910 PF02348 Cytidylyltransferase CJ12661_RS03920 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ12661_RS03925 PF00813 FliP family CJ12661_RS03930 PF12804 MobA-like NTP transferase domain CJ12661_RS03930 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12661_RS03935 PF02441 Flavoprotein CJ12661_RS03935 PF04127 DNA / pantothenate metabolism flavoprotein CJ12661_RS03945 PF01255 Putative undecaprenyl diphosphate synthase CJ12661_RS03960 PF01416 tRNA pseudouridine synthase CJ12661_RS03965 PF00291 Pyridoxal-phosphate dependent enzyme CJ12661_RS03965 PF13291 ACT domain CJ12661_RS03980 PF05958 tRNA (Uracil-5-)-methyltransferase CJ12661_RS03990 PF00106 short chain dehydrogenase CJ12661_RS04000 PF06434 Aconitate hydratase 2 N-terminus CJ12661_RS04000 PF11791 Aconitate B N-terminal domain CJ12661_RS04000 PF00330 Aconitase family (aconitate hydratase) CJ12661_RS04005 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJ12661_RS04005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJ12661_RS04015 PF09334 tRNA synthetases class I (M) CJ12661_RS04015 PF01588 Putative tRNA binding domain CJ12661_RS04015 PF00133 tRNA synthetases class I (I, L, M and V) CJ12661_RS04025 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CJ12661_RS04050 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJ12661_RS04055 PF00149 Calcineurin-like phosphoesterase CJ12661_RS04060 PF02666 Phosphatidylserine decarboxylase CJ12661_RS04065 PF01312 FlhB HrpN YscU SpaS Family CJ12661_RS04075 PF07690 Major Facilitator Superfamily CJ12661_RS04090 PF00202 Aminotransferase class-III CJ12661_RS04100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CJ12661_RS04100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CJ12661_RS04105 PF10502 Signal peptidase, peptidase S26 CJ12661_RS04110 PF03453 MoeA N-terminal region (domain I and II) CJ12661_RS04110 PF03454 MoeA C-terminal region (domain IV) CJ12661_RS04110 PF00994 Probable molybdopterin binding domain CJ12661_RS04115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJ12661_RS04130 PF02885 Glycosyl transferase family, helical bundle domain CJ12661_RS04130 PF00591 Glycosyl transferase family, a/b domain CJ12661_RS04130 PF00117 Glutamine amidotransferase class-I CJ12661_RS04135 PF04715 Anthranilate synthase component I, N terminal region CJ12661_RS04135 PF00425 chorismate binding enzyme CJ12661_RS04140 PF00589 Phage integrase family CJ12661_RS04140 PF18644 Phage integrase SAM-like domain CJ12661_RS04145 PF01323 DSBA-like thioredoxin domain CJ12661_RS04150 PF02600 Disulfide bond formation protein DsbB CJ12661_RS04165 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ12661_RS04195 PF00771 FHIPEP family CJ12661_RS04200 PF02082 Transcriptional regulator CJ12661_RS04205 PF00312 Ribosomal protein S15 CJ12661_RS04210 PF01580 FtsK/SpoIIIE family CJ12661_RS04210 PF17854 FtsK alpha domain CJ12661_RS04210 PF09397 Ftsk gamma domain CJ12661_RS04215 PF00700 Bacterial flagellin C-terminal helical region CJ12661_RS04215 PF00669 Bacterial flagellin N-terminal helical region CJ12661_RS04230 PF12848 ABC transporter CJ12661_RS04230 PF16326 ABC transporter C-terminal domain CJ12661_RS04230 PF00005 ABC transporter CJ12661_RS04235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12661_RS04235 PF00672 HAMP domain CJ12661_RS04235 PF00512 His Kinase A (phospho-acceptor) domain CJ12661_RS04240 PF00486 Transcriptional regulatory protein, C terminal CJ12661_RS04240 PF00072 Response regulator receiver domain CJ12661_RS04245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJ12661_RS04245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJ12661_RS04245 PF01842 ACT domain CJ12661_RS04255 PF00575 S1 RNA binding domain CJ12661_RS04260 PF02401 LytB protein CJ12661_RS04265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJ12661_RS04270 PF03147 Ferredoxin-fold anticodon binding domain CJ12661_RS04270 PF01588 Putative tRNA binding domain CJ12661_RS04270 PF03484 tRNA synthetase B5 domain CJ12661_RS04270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CJ12661_RS04270 PF03483 B3/4 domain CJ12661_RS04275 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CJ12661_RS04275 PF01409 tRNA synthetases class II core domain (F) CJ12661_RS04280 PF01230 HIT domain CJ12661_RS04295 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS04300 PF00005 ABC transporter CJ12661_RS04305 PF01235 Sodium:alanine symporter family CJ12661_RS04310 PF00588 SpoU rRNA Methylase family CJ12661_RS04315 PF01168 Alanine racemase, N-terminal domain CJ12661_RS04315 PF00842 Alanine racemase, C-terminal domain CJ12661_RS04340 PF02630 SCO1/SenC CJ12661_RS04345 PF00291 Pyridoxal-phosphate dependent enzyme CJ12661_RS04350 PF00216 Bacterial DNA-binding protein CJ12661_RS04360 PF03061 Thioesterase superfamily CJ12661_RS04370 PF02554 Carbon starvation protein CstA CJ12661_RS04370 PF13722 5TM C-terminal transporter carbon starvation CstA CJ12661_RS04375 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJ12661_RS04375 PF14572 Phosphoribosyl synthetase-associated domain CJ12661_RS04380 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS04385 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS04390 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ12661_RS04395 PF00005 ABC transporter CJ12661_RS04400 PF01739 CheR methyltransferase, SAM binding domain CJ12661_RS04405 PF00072 Response regulator receiver domain CJ12661_RS04405 PF01339 CheB methylesterase CJ12661_RS04410 PF02502 Ribose/Galactose Isomerase CJ12661_RS04420 PF00156 Phosphoribosyl transferase domain CJ12661_RS04430 PF00883 Cytosol aminopeptidase family, catalytic domain CJ12661_RS04435 PF06071 Protein of unknown function (DUF933) CJ12661_RS04435 PF01926 50S ribosome-binding GTPase CJ12661_RS04440 PF00206 Lyase CJ12661_RS04440 PF14698 Argininosuccinate lyase C-terminal CJ12661_RS04445 PF01293 Phosphoenolpyruvate carboxykinase CJ12661_RS04450 PF02436 Conserved carboxylase domain CJ12661_RS04450 PF00364 Biotin-requiring enzyme CJ12661_RS04450 PF00682 HMGL-like CJ12661_RS04455 PF00209 Sodium:neurotransmitter symporter family CJ12661_RS04460 PF00209 Sodium:neurotransmitter symporter family CJ12661_RS04465 PF00137 ATP synthase subunit C CJ12661_RS04525 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS04535 PF07516 SecA Wing and Scaffold domain CJ12661_RS04535 PF01043 SecA preprotein cross-linking domain CJ12661_RS04535 PF07517 SecA DEAD-like domain CJ12661_RS04535 PF02810 SEC-C motif CJ12661_RS04540 PF03548 Outer membrane lipoprotein carrier protein LolA CJ12661_RS04550 PF05970 PIF1-like helicase CJ12661_RS04550 PF02689 Helicase CJ12661_RS04560 PF00795 Carbon-nitrogen hydrolase CJ12661_RS04565 PF16916 Dimerisation domain of Zinc Transporter CJ12661_RS04565 PF01545 Cation efflux family CJ12661_RS04570 PF04371 Porphyromonas-type peptidyl-arginine deiminase CJ12661_RS04580 PF00672 HAMP domain CJ12661_RS04580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12661_RS04585 PF01808 AICARFT/IMPCHase bienzyme CJ12661_RS04585 PF02142 MGS-like domain CJ12661_RS04590 PF00226 DnaJ domain CJ12661_RS04590 PF05099 Tellurite resistance protein TerB CJ12661_RS04595 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CJ12661_RS04595 PF02769 AIR synthase related protein, C-terminal domain CJ12661_RS04595 PF00586 AIR synthase related protein, N-terminal domain CJ12661_RS04600 PF10396 GTP-binding protein TrmE N-terminus CJ12661_RS04600 PF12631 MnmE helical domain CJ12661_RS04600 PF01926 50S ribosome-binding GTPase CJ12661_RS04610 PF14849 YidC periplasmic domain CJ12661_RS04610 PF02096 60Kd inner membrane protein CJ12661_RS04615 PF01809 Putative membrane protein insertion efficiency factor CJ12661_RS04620 PF00825 Ribonuclease P CJ12661_RS04625 PF00468 Ribosomal protein L34 CJ12661_RS04640 PF03061 Thioesterase superfamily CJ12661_RS04660 PF01814 Hemerythrin HHE cation binding domain CJ12661_RS04665 PF01814 Hemerythrin HHE cation binding domain CJ12661_RS04670 PF08003 Protein of unknown function (DUF1698) CJ12661_RS04685 PF00565 Staphylococcal nuclease homologue CJ12661_RS04690 PF07687 Peptidase dimerisation domain CJ12661_RS04690 PF01546 Peptidase family M20/M25/M40 CJ12661_RS04695 PF08946 Osmosensory transporter coiled coil CJ12661_RS04695 PF00083 Sugar (and other) transporter CJ12661_RS04700 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ12661_RS04705 PF16668 Adhesin from Campylobacter CJ12661_RS04710 PF03883 Peroxide stress protein YaaA CJ12661_RS04715 PF07687 Peptidase dimerisation domain CJ12661_RS04715 PF01546 Peptidase family M20/M25/M40 CJ12661_RS04720 PF07690 Major Facilitator Superfamily CJ12661_RS04735 PF17437 Family of unknown function (DUF5416) CJ12661_RS04740 PF13183 4Fe-4S dicluster domain CJ12661_RS04740 PF02665 Nitrate reductase gamma subunit CJ12661_RS04740 PF02754 Cysteine-rich domain CJ12661_RS04745 PF04055 Radical SAM superfamily CJ12661_RS04745 PF06969 HemN C-terminal domain CJ12661_RS04750 PF10788 Protein of unknown function (DUF2603) CJ12661_RS04755 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJ12661_RS04755 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJ12661_RS04760 PF00490 Delta-aminolevulinic acid dehydratase CJ12661_RS04765 PF00925 GTP cyclohydrolase II CJ12661_RS04770 PF02527 rRNA small subunit methyltransferase G CJ12661_RS04780 PF03601 Conserved hypothetical protein 698 CJ12661_RS04785 PF03466 LysR substrate binding domain CJ12661_RS04785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ12661_RS04790 PF04539 Sigma-70 region 3 CJ12661_RS04790 PF00140 Sigma-70 factor, region 1.2 CJ12661_RS04790 PF04542 Sigma-70 region 2 CJ12661_RS04790 PF04545 Sigma-70, region 4 CJ12661_RS04810 PF00004 ATPase family associated with various cellular activities (AAA) CJ12661_RS04810 PF06480 FtsH Extracellular CJ12661_RS04810 PF17862 AAA+ lid domain CJ12661_RS04810 PF01434 Peptidase family M41 CJ12661_RS04815 PF04055 Radical SAM superfamily CJ12661_RS04815 PF00919 Uncharacterized protein family UPF0004 CJ12661_RS04825 PF01761 3-dehydroquinate synthase CJ12661_RS04835 PF01702 Queuine tRNA-ribosyltransferase CJ12661_RS04855 PF05140 ResB-like family CJ12661_RS04855 PF01578 Cytochrome C assembly protein CJ12661_RS04860 PF00005 ABC transporter CJ12661_RS04865 PF00005 ABC transporter CJ12661_RS04865 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ12661_RS04870 PF11862 Domain of unknown function (DUF3382) CJ12661_RS04870 PF02653 Branched-chain amino acid transport system / permease component CJ12661_RS04875 PF02653 Branched-chain amino acid transport system / permease component CJ12661_RS04880 PF13458 Periplasmic binding protein CJ12661_RS04885 PF13458 Periplasmic binding protein CJ12661_RS04905 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJ12661_RS04905 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJ12661_RS04910 PF00158 Sigma-54 interaction domain CJ12661_RS04910 PF00072 Response regulator receiver domain CJ12661_RS04925 PF03989 DNA gyrase C-terminal domain, beta-propeller CJ12661_RS04925 PF00521 DNA gyrase/topoisomerase IV, subunit A CJ12661_RS04940 PF06421 GTP-binding protein LepA C-terminus CJ12661_RS04940 PF00009 Elongation factor Tu GTP binding domain CJ12661_RS04940 PF03144 Elongation factor Tu domain 2 CJ12661_RS04940 PF00679 Elongation factor G C-terminus CJ12661_RS04950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ12661_RS04950 PF00529 HlyD membrane-fusion protein of T1SS CJ12661_RS04955 PF00873 AcrB/AcrD/AcrF family CJ12661_RS04965 PF04376 Arginine-tRNA-protein transferase, N terminus CJ12661_RS04965 PF04377 Arginine-tRNA-protein transferase, C terminus CJ12661_RS04975 PF02785 Biotin carboxylase C-terminal domain CJ12661_RS04975 PF00289 Biotin carboxylase, N-terminal domain CJ12661_RS04975 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ12661_RS04980 PF01098 Cell cycle protein CJ12661_RS04985 PF04101 Glycosyltransferase family 28 C-terminal domain CJ12661_RS04985 PF03033 Glycosyltransferase family 28 N-terminal domain CJ12661_RS05000 PF12833 Helix-turn-helix domain CJ12661_RS05005 PF02581 Thiamine monophosphate synthase CJ12661_RS05010 PF06968 Biotin and Thiamin Synthesis associated domain CJ12661_RS05010 PF04055 Radical SAM superfamily CJ12661_RS05015 PF05690 Thiazole biosynthesis protein ThiG CJ12661_RS05020 PF00581 Rhodanese-like domain CJ12661_RS05020 PF00899 ThiF family CJ12661_RS05030 PF07687 Peptidase dimerisation domain CJ12661_RS05030 PF01546 Peptidase family M20/M25/M40 CJ12661_RS05040 PF02146 Sir2 family CJ12661_RS05045 PF01713 Smr domain CJ12661_RS05045 PF00488 MutS domain V CJ12661_RS05055 PF08245 Mur ligase middle domain CJ12661_RS05055 PF02875 Mur ligase family, glutamate ligase domain CJ12661_RS05055 PF01225 Mur ligase family, catalytic domain CJ12661_RS05075 PF00571 CBS domain CJ12661_RS05075 PF00478 IMP dehydrogenase / GMP reductase domain CJ12661_RS05080 PF01425 Amidase CJ12661_RS05090 PF08264 Anticodon-binding domain of tRNA CJ12661_RS05090 PF00133 tRNA synthetases class I (I, L, M and V) CJ12661_RS05095 PF02464 Competence-damaged protein CJ12661_RS05095 PF00994 Probable molybdopterin binding domain CJ12661_RS05100 PF00583 Acetyltransferase (GNAT) family CJ12661_RS05105 PF00881 Nitroreductase family CJ12661_RS05110 PF00881 Nitroreductase family CJ12661_RS05115 PF01066 CDP-alcohol phosphatidyltransferase CJ12661_RS05120 PF02163 Peptidase family M50 CJ12661_RS05120 PF17820 PDZ domain CJ12661_RS05125 PF04393 Protein of unknown function (DUF535) CJ12661_RS05135 PF07690 Major Facilitator Superfamily CJ12661_RS05140 PF01250 Ribosomal protein S6 CJ12661_RS05145 PF00436 Single-strand binding protein family CJ12661_RS05150 PF01084 Ribosomal protein S18 CJ12661_RS05155 PF02190 ATP-dependent protease La (LON) substrate-binding domain CJ12661_RS05155 PF05362 Lon protease (S16) C-terminal proteolytic domain CJ12661_RS05155 PF00004 ATPase family associated with various cellular activities (AAA) CJ12661_RS05165 PF02623 FliW protein CJ12661_RS05170 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJ12661_RS05170 PF03807 NADP oxidoreductase coenzyme F420-dependent CJ12661_RS05195 PF02581 Thiamine monophosphate synthase CJ12661_RS05200 PF08543 Phosphomethylpyrimidine kinase CJ12661_RS05215 PF00270 DEAD/DEAH box helicase CJ12661_RS05215 PF02559 CarD-like/TRCF domain CJ12661_RS05215 PF00271 Helicase conserved C-terminal domain CJ12661_RS05215 PF17757 UvrB interaction domain CJ12661_RS05215 PF03461 TRCF domain CJ12661_RS05225 PF01551 Peptidase family M23 CJ12661_RS05225 PF04225 Opacity-associated protein A LysM-like domain CJ12661_RS05230 PF02875 Mur ligase family, glutamate ligase domain CJ12661_RS05230 PF08245 Mur ligase middle domain CJ12661_RS05245 PF09334 tRNA synthetases class I (M) CJ12661_RS05245 PF00133 tRNA synthetases class I (I, L, M and V) CJ12661_RS05245 PF13603 Leucyl-tRNA synthetase, Domain 2 CJ12661_RS05250 PF07549 SecD/SecF GG Motif CJ12661_RS05250 PF02355 Protein export membrane protein CJ12661_RS05255 PF02355 Protein export membrane protein CJ12661_RS05260 PF02699 Preprotein translocase subunit CJ12661_RS05270 PF02773 S-adenosylmethionine synthetase, C-terminal domain CJ12661_RS05270 PF00438 S-adenosylmethionine synthetase, N-terminal domain CJ12661_RS05270 PF02772 S-adenosylmethionine synthetase, central domain CJ12661_RS05275 PF00375 Sodium:dicarboxylate symporter family CJ12661_RS05280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJ12661_RS05280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJ12661_RS05285 PF01432 Peptidase family M3 CJ12661_RS05285 PF08439 Oligopeptidase F CJ12661_RS05295 PF13361 UvrD-like helicase C-terminal domain CJ12661_RS05295 PF00580 UvrD/REP helicase N-terminal domain CJ12661_RS05300 PF01509 TruB family pseudouridylate synthase (N terminal domain) CJ12661_RS05305 PF02599 Global regulator protein family CJ12661_RS05310 PF00288 GHMP kinases N terminal domain CJ12661_RS05315 PF01668 SmpB protein CJ12661_RS05325 PF02617 ATP-dependent Clp protease adaptor protein ClpS CJ12661_RS05330 PF00004 ATPase family associated with various cellular activities (AAA) CJ12661_RS05330 PF02861 Clp amino terminal domain, pathogenicity island component CJ12661_RS05330 PF17871 AAA lid domain CJ12661_RS05330 PF07724 AAA domain (Cdc48 subfamily) CJ12661_RS05330 PF10431 C-terminal, D2-small domain, of ClpB protein CJ12661_RS05335 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CJ12661_RS05340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12661_RS05340 PF13426 PAS domain CJ12661_RS05340 PF08447 PAS fold CJ12661_RS05345 PF01914 MarC family integral membrane protein CJ12661_RS05350 PF01641 SelR domain CJ12661_RS05355 PF04305 Protein of unknown function (DUF455) CJ12661_RS05360 PF01066 CDP-alcohol phosphatidyltransferase CJ12661_RS05370 PF00004 ATPase family associated with various cellular activities (AAA) CJ12661_RS05370 PF01434 Peptidase family M41 CJ12661_RS05370 PF17862 AAA+ lid domain CJ12661_RS05380 PF00072 Response regulator receiver domain CJ12661_RS05390 PF02719 Polysaccharide biosynthesis protein CJ12661_RS05395 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ12661_RS05400 PF17836 PglD N-terminal domain CJ12661_RS05400 PF00132 Bacterial transferase hexapeptide (six repeats) CJ12661_RS05405 PF02397 Bacterial sugar transferase CJ12661_RS05410 PF00534 Glycosyl transferases group 1 CJ12661_RS05410 PF13477 Glycosyl transferase 4-like CJ12661_RS05415 PF02516 Oligosaccharyl transferase STT3 subunit CJ12661_RS05415 PF18527 STT3/PglB C-terminal beta-barrel domain CJ12661_RS05420 PF00534 Glycosyl transferases group 1 CJ12661_RS05420 PF13439 Glycosyltransferase Family 4 CJ12661_RS05425 PF00535 Glycosyl transferase family 2 CJ12661_RS05430 PF13439 Glycosyltransferase Family 4 CJ12661_RS05430 PF00534 Glycosyl transferases group 1 CJ12661_RS05435 PF00005 ABC transporter CJ12661_RS05435 PF00664 ABC transporter transmembrane region CJ12661_RS05440 PF16363 GDP-mannose 4,6 dehydratase CJ12661_RS05450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJ12661_RS05455 PF03279 Bacterial lipid A biosynthesis acyltransferase CJ12661_RS05460 PF00535 Glycosyl transferase family 2 CJ12661_RS05465 PF00535 Glycosyl transferase family 2 CJ12661_RS05470 PF00535 Glycosyl transferase family 2 CJ12661_RS05470 PF01501 Glycosyl transferase family 8 CJ12661_RS05485 PF00535 Glycosyl transferase family 2 CJ12661_RS05495 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CJ12661_RS05500 PF13580 SIS domain CJ12661_RS05505 PF01467 Cytidylyltransferase-like CJ12661_RS05505 PF00294 pfkB family carbohydrate kinase CJ12661_RS05510 PF01370 NAD dependent epimerase/dehydratase family CJ12661_RS05515 PF08645 Polynucleotide kinase 3 phosphatase CJ12661_RS05530 PF00403 Heavy-metal-associated domain CJ12661_RS05535 PF07497 Rho termination factor, RNA-binding domain CJ12661_RS05535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ12661_RS05535 PF07498 Rho termination factor, N-terminal domain CJ12661_RS05540 PF12170 DNA polymerase III tau subunit V interacting with alpha CJ12661_RS05540 PF12169 DNA polymerase III subunits gamma and tau domain III CJ12661_RS05550 PF00403 Heavy-metal-associated domain CJ12661_RS05570 PF06738 Putative threonine/serine exporter CJ12661_RS05570 PF12821 Threonine/Serine exporter, ThrE CJ12661_RS05580 PF00056 lactate/malate dehydrogenase, NAD binding domain CJ12661_RS05580 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJ12661_RS05585 PF09335 SNARE associated Golgi protein CJ12661_RS05600 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJ12661_RS05605 PF01709 Transcriptional regulator CJ12661_RS05610 PF00893 Small Multidrug Resistance protein CJ12661_RS05615 PF00893 Small Multidrug Resistance protein CJ12661_RS05620 PF03485 Arginyl tRNA synthetase N terminal domain CJ12661_RS05620 PF05746 DALR anticodon binding domain CJ12661_RS05620 PF00750 tRNA synthetases class I (R) CJ12661_RS05625 PF02416 mttA/Hcf106 family CJ12661_RS05630 PF00625 Guanylate kinase CJ12661_RS05640 PF01311 Bacterial export proteins, family 1 CJ12661_RS05645 PF00005 ABC transporter CJ12661_RS05650 PF00889 Elongation factor TS CJ12661_RS05655 PF00318 Ribosomal protein S2 CJ12661_RS05670 PF00032 Cytochrome b(C-terminal)/b6/petD CJ12661_RS05670 PF00033 Cytochrome b/b6/petB CJ12661_RS05675 PF00355 Rieske [2Fe-2S] domain CJ12661_RS05675 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CJ12661_RS05680 PF02040 Arsenical pump membrane protein CJ12661_RS05685 PF01134 Glucose inhibited division protein A CJ12661_RS05685 PF13932 GidA associated domain CJ12661_RS05695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12661_RS05695 PF08447 PAS fold CJ12661_RS05695 PF13426 PAS domain CJ12661_RS05705 PF00375 Sodium:dicarboxylate symporter family CJ12661_RS05715 PF01384 Phosphate transporter family CJ12661_RS05720 PF01979 Amidohydrolase family CJ12661_RS05725 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJ12661_RS05725 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJ12661_RS05730 PF02637 GatB domain CJ12661_RS05730 PF02934 GatB/GatE catalytic domain CJ12661_RS05735 PF02664 S-Ribosylhomocysteinase (LuxS) CJ12661_RS05740 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CJ12661_RS05740 PF03171 2OG-Fe(II) oxygenase superfamily CJ12661_RS05745 PF03180 NLPA lipoprotein CJ12661_RS05750 PF01717 Cobalamin-independent synthase, Catalytic domain CJ12661_RS05750 PF08267 Cobalamin-independent synthase, N-terminal domain CJ12661_RS05755 PF02219 Methylenetetrahydrofolate reductase CJ12661_RS05765 PF00119 ATP synthase A chain CJ12661_RS05770 PF18073 Rubredoxin metal binding domain CJ12661_RS05775 PF00448 SRP54-type protein, GTPase domain CJ12661_RS05790 PF12072 Domain of unknown function (DUF3552) CJ12661_RS05790 PF01966 HD domain CJ12661_RS05805 PF03631 Virulence factor BrkB CJ12661_RS05810 PF02913 FAD linked oxidases, C-terminal domain CJ12661_RS05810 PF01565 FAD binding domain CJ12661_RS05820 PF01476 LysM domain CJ12661_RS05820 PF08525 Opacity-associated protein A N-terminal motif CJ12661_RS05820 PF01551 Peptidase family M23 CJ12661_RS05830 PF02578 Multi-copper polyphenol oxidoreductase laccase CJ12661_RS05835 PF00677 Lumazine binding domain CJ12661_RS05845 PF00166 Chaperonin 10 Kd subunit CJ12661_RS05850 PF00118 TCP-1/cpn60 chaperonin family CJ12661_RS05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12661_RS05860 PF00486 Transcriptional regulatory protein, C terminal CJ12661_RS05860 PF00072 Response regulator receiver domain CJ12661_RS05865 PF01814 Hemerythrin HHE cation binding domain CJ12661_RS05885 PF00072 Response regulator receiver domain CJ12661_RS05885 PF00486 Transcriptional regulatory protein, C terminal CJ12661_RS05890 PF00595 PDZ domain CJ12661_RS05895 PF01556 DnaJ C terminal domain CJ12661_RS05895 PF00226 DnaJ domain CJ12661_RS05900 PF13411 MerR HTH family regulatory protein CJ12661_RS05905 PF02254 TrkA-N domain CJ12661_RS05905 PF00999 Sodium/hydrogen exchanger family CJ12661_RS05915 PF13419 Haloacid dehalogenase-like hydrolase CJ12661_RS05920 PF02092 Glycyl-tRNA synthetase beta subunit CJ12661_RS05925 PF01551 Peptidase family M23 CJ12661_RS05935 PF02541 Ppx/GppA phosphatase family CJ12661_RS05940 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CJ12661_RS05945 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CJ12661_RS05955 PF07690 Major Facilitator Superfamily CJ12661_RS05965 PF01208 Uroporphyrinogen decarboxylase (URO-D) CJ12661_RS05970 PF04055 Radical SAM superfamily CJ12661_RS05980 PF02151 UvrB/uvrC motif CJ12661_RS05980 PF08459 UvrC Helix-hairpin-helix N-terminal CJ12661_RS05980 PF01541 GIY-YIG catalytic domain CJ12661_RS05990 PF02540 NAD synthase CJ12661_RS05990 PF00958 GMP synthase C terminal domain CJ12661_RS05990 PF00117 Glutamine amidotransferase class-I CJ12661_RS06000 PF02844 Phosphoribosylglycinamide synthetase, N domain CJ12661_RS06000 PF02843 Phosphoribosylglycinamide synthetase, C domain CJ12661_RS06000 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CJ12661_RS06015 PF00575 S1 RNA binding domain CJ12661_RS06015 PF03725 3' exoribonuclease family, domain 2 CJ12661_RS06015 PF01138 3' exoribonuclease family, domain 1 CJ12661_RS06015 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CJ12661_RS06015 PF00013 KH domain CJ12661_RS06030 PF07690 Major Facilitator Superfamily CJ12661_RS06035 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJ12661_RS06040 PF05538 Campylobacter major outer membrane protein CJ12661_RS06045 PF01556 DnaJ C terminal domain CJ12661_RS06045 PF00684 DnaJ central domain CJ12661_RS06045 PF00226 DnaJ domain CJ12661_RS06050 PF00486 Transcriptional regulatory protein, C terminal CJ12661_RS06050 PF00072 Response regulator receiver domain CJ12661_RS06060 PF13662 Toprim domain CJ12661_RS06060 PF02132 RecR protein CJ12661_RS06065 PF01750 Hydrogenase maturation protease CJ12661_RS06070 PF01292 Prokaryotic cytochrome b561 CJ12661_RS06075 PF00374 Nickel-dependent hydrogenase CJ12661_RS06080 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ12661_RS06080 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJ12661_RS06080 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJ12661_RS06085 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CJ12661_RS06085 PF01266 FAD dependent oxidoreductase CJ12661_RS06090 PF01520 N-acetylmuramoyl-L-alanine amidase CJ12661_RS06090 PF11741 AMIN domain CJ12661_RS06100 PF00579 tRNA synthetases class I (W and Y) CJ12661_RS06105 PF13291 ACT domain CJ12661_RS06105 PF04607 Region found in RelA / SpoT proteins CJ12661_RS06105 PF02824 TGS domain CJ12661_RS06110 PF01192 RNA polymerase Rpb6 CJ12661_RS06115 PF00696 Amino acid kinase family CJ12661_RS06130 PF09383 NIL domain CJ12661_RS06130 PF00005 ABC transporter CJ12661_RS06135 PF02390 Putative methyltransferase CJ12661_RS06145 PF01479 S4 domain CJ12661_RS06145 PF00849 RNA pseudouridylate synthase CJ12661_RS06150 PF01098 Cell cycle protein CJ12661_RS06165 PF02386 Cation transport protein CJ12661_RS06170 PF02080 TrkA-C domain CJ12661_RS06170 PF02254 TrkA-N domain CJ12661_RS06175 PF02621 Menaquinone biosynthesis CJ12661_RS06185 PF03949 Malic enzyme, NAD binding domain CJ12661_RS06185 PF01515 Phosphate acetyl/butaryl transferase CJ12661_RS06185 PF00390 Malic enzyme, N-terminal domain CJ12661_RS06190 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJ12661_RS06195 PF09312 SurA N-terminal domain CJ12661_RS06195 PF00639 PPIC-type PPIASE domain CJ12661_RS06200 PF02785 Biotin carboxylase C-terminal domain CJ12661_RS06200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ12661_RS06200 PF00289 Biotin carboxylase, N-terminal domain CJ12661_RS06205 PF00364 Biotin-requiring enzyme CJ12661_RS06210 PF00692 dUTPase CJ12661_RS06215 PF02719 Polysaccharide biosynthesis protein CJ12661_RS06220 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ12661_RS06225 PF16221 winged helix-turn-helix CJ12661_RS06225 PF16254 Domain of unknown function (DUF4910) CJ12661_RS06225 PF09940 Domain of unknown function (DUF2172) CJ12661_RS06250 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJ12661_RS06250 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJ12661_RS06265 PF00550 Phosphopantetheine attachment site CJ12661_RS06265 PF00668 Condensation domain CJ12661_RS06265 PF13193 AMP-binding enzyme C-terminal domain CJ12661_RS06265 PF00501 AMP-binding enzyme CJ12661_RS06285 PF02348 Cytidylyltransferase CJ12661_RS06295 PF13302 Acetyltransferase (GNAT) domain CJ12661_RS06300 PF00977 Histidine biosynthesis protein CJ12661_RS06305 PF00117 Glutamine amidotransferase class-I CJ12661_RS06315 PF08666 SAF domain CJ12661_RS06315 PF03102 NeuB family CJ12661_RS06325 PF16363 GDP-mannose 4,6 dehydratase CJ12661_RS06330 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ12661_RS06340 PF08666 SAF domain CJ12661_RS06340 PF03102 NeuB family CJ12661_RS06345 PF02350 UDP-N-acetylglucosamine 2-epimerase CJ12661_RS06350 PF00483 Nucleotidyl transferase CJ12661_RS06360 PF02348 Cytidylyltransferase CJ12661_RS06390 PF00700 Bacterial flagellin C-terminal helical region CJ12661_RS06390 PF07196 Flagellin hook IN motif CJ12661_RS06390 PF00669 Bacterial flagellin N-terminal helical region CJ12661_RS06395 PF07196 Flagellin hook IN motif CJ12661_RS06395 PF00700 Bacterial flagellin C-terminal helical region CJ12661_RS06395 PF00669 Bacterial flagellin N-terminal helical region CJ12661_RS06415 PF08334 Type II secretion system (T2SS), protein G CJ12661_RS06415 PF07963 Prokaryotic N-terminal methylation motif CJ12661_RS06420 PF00814 Glycoprotease family CJ12661_RS06430 PF13288 DXP reductoisomerase C-terminal domain CJ12661_RS06430 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJ12661_RS06430 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CJ12661_RS06445 PF05670 NFACT protein RNA binding domain CJ12661_RS06450 PF12804 MobA-like NTP transferase domain CJ12661_RS06455 PF02253 Phospholipase A1 CJ12661_RS06460 PF01032 FecCD transport family CJ12661_RS06465 PF01032 FecCD transport family CJ12661_RS06470 PF00005 ABC transporter CJ12661_RS06475 PF01497 Periplasmic binding protein CJ12661_RS06490 PF02335 Cytochrome c552 CJ12661_RS06495 PF03264 NapC/NirT cytochrome c family, N-terminal region CJ12661_RS06500 PF17941 Polyphosphate kinase C-terminal domain 1 CJ12661_RS06500 PF13090 Polyphosphate kinase C-terminal domain 2 CJ12661_RS06500 PF13089 Polyphosphate kinase N-terminal domain CJ12661_RS06500 PF02503 Polyphosphate kinase middle domain CJ12661_RS06530 PF17864 RuvB AAA lid domain CJ12661_RS06530 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJ12661_RS06530 PF05491 RuvB C-terminal winged helix domain CJ12661_RS06535 PF01594 AI-2E family transporter CJ12661_RS06540 PF10415 Fumarase C C-terminus CJ12661_RS06540 PF00206 Lyase CJ12661_RS06545 PF01380 SIS domain CJ12661_RS06555 PF04055 Radical SAM superfamily CJ12661_RS06560 PF00860 Permease family CJ12661_RS06570 PF04333 MlaA lipoprotein CJ12661_RS06585 PF01725 Ham1 family CJ12661_RS06590 PF07690 Major Facilitator Superfamily CJ12661_RS06600 PF03841 L-seryl-tRNA selenium transferase CJ12661_RS06605 PF03144 Elongation factor Tu domain 2 CJ12661_RS06605 PF09107 Elongation factor SelB, winged helix CJ12661_RS06605 PF09106 Elongation factor SelB, winged helix CJ12661_RS06605 PF00009 Elongation factor Tu GTP binding domain CJ12661_RS06610 PF13098 Thioredoxin-like domain CJ12661_RS06620 PF00258 Flavodoxin CJ12661_RS06635 PF06628 Catalase-related immune-responsive CJ12661_RS06635 PF00199 Catalase CJ12661_RS06645 PF08348 YheO-like PAS domain CJ12661_RS06645 PF13309 HTH domain CJ12661_RS06650 PF01042 Endoribonuclease L-PSP CJ12661_RS06655 PF03606 C4-dicarboxylate anaerobic carrier CJ12661_RS06660 PF01053 Cys/Met metabolism PLP-dependent enzyme CJ12661_RS06665 PF10397 Adenylosuccinate lyase C-terminus CJ12661_RS06665 PF00206 Lyase CJ12661_RS06675 PF04023 FeoA domain CJ12661_RS06680 PF02421 Ferrous iron transport protein B CJ12661_RS06680 PF07670 Nucleoside recognition CJ12661_RS06680 PF07664 Ferrous iron transport protein B C terminus CJ12661_RS06685 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJ12661_RS06685 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ12661_RS06685 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJ12661_RS06695 PF00121 Triosephosphate isomerase CJ12661_RS06700 PF00162 Phosphoglycerate kinase CJ12661_RS06705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJ12661_RS06705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJ12661_RS06710 PF01467 Cytidylyltransferase-like CJ12661_RS06725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJ12661_RS06725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJ12661_RS06725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJ12661_RS06725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJ12661_RS06730 PF03748 Flagellar basal body-associated protein FliL CJ12661_RS06735 PF01648 4'-phosphopantetheinyl transferase superfamily CJ12661_RS06745 PF00067 Cytochrome P450 CJ12661_RS06755 PF05159 Capsule polysaccharide biosynthesis protein CJ12661_RS06760 PF05159 Capsule polysaccharide biosynthesis protein CJ12661_RS06770 PF00483 Nucleotidyl transferase CJ12661_RS06775 PF00117 Glutamine amidotransferase class-I CJ12661_RS06780 PF00391 PEP-utilising enzyme, mobile domain CJ12661_RS06780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CJ12661_RS06785 PF01209 ubiE/COQ5 methyltransferase family CJ12661_RS06800 PF00483 Nucleotidyl transferase CJ12661_RS06805 PF13580 SIS domain CJ12661_RS06810 PF08544 GHMP kinases C terminal CJ12661_RS06810 PF00288 GHMP kinases N terminal domain CJ12661_RS06815 PF16363 GDP-mannose 4,6 dehydratase CJ12661_RS06820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ12661_RS06825 PF01370 NAD dependent epimerase/dehydratase family CJ12661_RS06830 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CJ12661_RS06845 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CJ12661_RS06855 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJ12661_RS06860 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CJ12661_RS06865 PF00571 CBS domain CJ12661_RS06865 PF01380 SIS domain CJ12661_RS06870 PF10531 SLBB domain CJ12661_RS06870 PF02563 Polysaccharide biosynthesis/export protein CJ12661_RS06880 PF00005 ABC transporter CJ12661_RS06885 PF01061 ABC-2 type transporter CJ12661_RS06910 PF01171 PP-loop family CJ12661_RS06915 PF04055 Radical SAM superfamily CJ12661_RS06915 PF00919 Uncharacterized protein family UPF0004 CJ12661_RS06920 PF00472 RF-1 domain CJ12661_RS06920 PF03462 PCRF domain CJ12661_RS06930 PF01142 tRNA pseudouridine synthase D (TruD) CJ12661_RS06935 PF00586 AIR synthase related protein, N-terminal domain CJ12661_RS06935 PF02769 AIR synthase related protein, C-terminal domain CJ12661_RS06955 PF02119 Flagellar P-ring protein CJ12661_RS06975 PF07196 Flagellin hook IN motif CJ12661_RS06975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12661_RS06985 PF01925 Sulfite exporter TauE/SafE CJ12661_RS06990 PF00482 Type II secretion system (T2SS), protein F CJ12661_RS06995 PF00437 Type II/IV secretion system protein CJ12661_RS07010 PF00263 Bacterial type II and III secretion system protein CJ12661_RS07010 PF07655 Secretin N-terminal domain CJ12661_RS07020 PF10371 Domain of unknown function CJ12661_RS07020 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CJ12661_RS07020 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CJ12661_RS07020 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CJ12661_RS07020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ12661_RS07025 PF13419 Haloacid dehalogenase-like hydrolase CJ12661_RS07030 PF05736 OprF membrane domain CJ12661_RS07030 PF00691 OmpA family CJ12661_RS07035 PF00380 Ribosomal protein S9/S16 CJ12661_RS07040 PF00572 Ribosomal protein L13 CJ12661_RS07045 PF00580 UvrD/REP helicase N-terminal domain CJ12661_RS07045 PF13361 UvrD-like helicase C-terminal domain CJ12661_RS07050 PF12705 PD-(D/E)XK nuclease superfamily CJ12661_RS07075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ12661_RS07075 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CJ12661_RS07090 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJ12661_RS07100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ12661_RS07100 PF08448 PAS fold CJ12661_RS07100 PF08447 PAS fold CJ12661_RS07110 PF00117 Glutamine amidotransferase class-I CJ12661_RS07110 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJ12661_RS07130 PF00709 Adenylosuccinate synthetase CJ12661_RS07140 PF04143 Sulphur transport CJ12661_RS07145 PF01206 Sulfurtransferase TusA CJ12661_RS07150 PF00474 Sodium:solute symporter family CJ12661_RS07155 PF01619 Proline dehydrogenase CJ12661_RS07155 PF14850 DNA-binding domain of Proline dehydrogenase CJ12661_RS07155 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CJ12661_RS07155 PF00171 Aldehyde dehydrogenase family CJ12661_RS07170 PF08447 PAS fold CJ12661_RS07170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12661_RS07170 PF13426 PAS domain CJ12661_RS07180 PF02634 FdhD/NarQ family CJ12661_RS07190 PF13247 4Fe-4S dicluster domain CJ12661_RS07210 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJ12661_RS07215 PF07732 Multicopper oxidase CJ12661_RS07215 PF07731 Multicopper oxidase CJ12661_RS07225 PF02391 MoaE protein CJ12661_RS07230 PF00994 Probable molybdopterin binding domain CJ12661_RS07230 PF03454 MoeA C-terminal region (domain IV) CJ12661_RS07230 PF03453 MoeA N-terminal region (domain I and II) CJ12661_RS07235 PF09827 CRISPR associated protein Cas2 CJ12661_RS07240 PF01867 CRISPR associated protein Cas1 CJ12661_RS07245 PF18541 RuvC endonuclease subdomain 3 CJ12661_RS07245 PF13395 HNH endonuclease CJ12661_RS07250 PF03606 C4-dicarboxylate anaerobic carrier CJ12661_RS07255 PF02769 AIR synthase related protein, C-terminal domain CJ12661_RS07255 PF00586 AIR synthase related protein, N-terminal domain CJ12661_RS07260 PF01121 Dephospho-CoA kinase CJ12661_RS07265 PF01678 Diaminopimelate epimerase CJ12661_RS07270 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJ12661_RS07280 PF00210 Ferritin-like domain CJ12661_RS07285 PF00342 Phosphoglucose isomerase CJ12661_RS07290 PF00483 Nucleotidyl transferase CJ12661_RS07295 PF16177 Acetyl-coenzyme A synthetase N-terminus CJ12661_RS07295 PF00501 AMP-binding enzyme CJ12661_RS07295 PF13193 AMP-binding enzyme C-terminal domain CJ12661_RS07300 PF00005 ABC transporter CJ12661_RS07305 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS07310 PF12849 PBP superfamily domain CJ12661_RS07315 PF03746 LamB/YcsF family CJ12661_RS07320 PF02682 Carboxyltransferase domain, subdomain C and D CJ12661_RS07325 PF02626 Carboxyltransferase domain, subdomain A and B CJ12661_RS07335 PF02525 Flavodoxin-like fold CJ12661_RS07340 PF01638 HxlR-like helix-turn-helix CJ12661_RS07350 PF08240 Alcohol dehydrogenase GroES-like domain CJ12661_RS07350 PF00107 Zinc-binding dehydrogenase CJ12661_RS07390 PF07690 Major Facilitator Superfamily CJ12661_RS07395 PF03773 Predicted permease CJ12661_RS07400 PF01022 Bacterial regulatory protein, arsR family CJ12661_RS07410 PF01758 Sodium Bile acid symporter family CJ12661_RS07420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ12661_RS07420 PF00672 HAMP domain CJ12661_RS07430 PF00361 Proton-conducting membrane transporter CJ12661_RS07435 PF00361 Proton-conducting membrane transporter CJ12661_RS07440 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CJ12661_RS07440 PF00361 Proton-conducting membrane transporter CJ12661_RS07445 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CJ12661_RS07450 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CJ12661_RS07455 PF12838 4Fe-4S dicluster domain CJ12661_RS07460 PF00146 NADH dehydrogenase CJ12661_RS07465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ12661_RS07465 PF12838 4Fe-4S dicluster domain CJ12661_RS07465 PF00384 Molybdopterin oxidoreductase CJ12661_RS07465 PF01568 Molydopterin dinucleotide binding domain CJ12661_RS07465 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJ12661_RS07480 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CJ12661_RS07485 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CJ12661_RS07490 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ12661_RS07495 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CJ12661_RS07500 PF00005 ABC transporter CJ12661_RS07505 PF00005 ABC transporter CJ12661_RS07505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJ12661_RS07510 PF12911 N-terminal TM domain of oligopeptide transport permease C CJ12661_RS07510 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS07515 PF00528 Binding-protein-dependent transport system inner membrane component CJ12661_RS07520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJ12661_RS07525 PF01568 Molydopterin dinucleotide binding domain CJ12661_RS07525 PF00384 Molybdopterin oxidoreductase CJ12661_RS07525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ12661_RS07530 PF13247 4Fe-4S dicluster domain CJ12661_RS07530 PF12800 4Fe-4S binding domain CJ12661_RS07545 PF00042 Globin CJ12661_RS07545 PF00175 Oxidoreductase NAD-binding domain CJ12661_RS07545 PF00970 Oxidoreductase FAD-binding domain CJ12661_RS07550 PF00005 ABC transporter CJ12661_RS07555 PF07690 Major Facilitator Superfamily CJ12661_RS07560 PF00753 Metallo-beta-lactamase superfamily CJ12661_RS07565 PF01176 Translation initiation factor 1A / IF-1 CJ12661_RS07570 PF00444 Ribosomal protein L36 CJ12661_RS07575 PF00416 Ribosomal protein S13/S18 CJ12661_RS07580 PF00411 Ribosomal protein S11 CJ12661_RS07585 PF00163 Ribosomal protein S4/S9 N-terminal domain CJ12661_RS07585 PF01479 S4 domain CJ12661_RS07590 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CJ12661_RS07590 PF01000 RNA polymerase Rpb3/RpoA insert domain CJ12661_RS07590 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CJ12661_RS07595 PF01196 Ribosomal protein L17 CJ12661_RS07600 PF01634 ATP phosphoribosyltransferase CJ12661_RS07600 PF08029 HisG, C-terminal domain CJ12661_RS07605 PF00815 Histidinol dehydrogenase CJ12661_RS07610 PF00475 Imidazoleglycerol-phosphate dehydratase CJ12661_RS07610 PF08645 Polynucleotide kinase 3 phosphatase CJ12661_RS07615 PF00117 Glutamine amidotransferase class-I CJ12661_RS07620 PF00977 Histidine biosynthesis protein CJ12661_RS07625 PF00977 Histidine biosynthesis protein CJ12661_RS07630 PF01502 Phosphoribosyl-AMP cyclohydrolase CJ12661_RS07630 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CJ12661_RS07635 PF14602 Hexapeptide repeat of succinyl-transferase CJ12661_RS07635 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CJ12661_RS07640 PF01883 Iron-sulfur cluster assembly protein CJ12661_RS07640 PF10609 NUBPL iron-transfer P-loop NTPase CJ12661_RS07645 PF02542 YgbB family CJ12661_RS07645 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJ12661_RS07650 PF00486 Transcriptional regulatory protein, C terminal CJ12661_RS07650 PF00072 Response regulator receiver domain CJ12661_RS07655 PF01747 ATP-sulfurylase CJ12661_RS07655 PF14306 PUA-like domain CJ12661_RS07660 PF04608 Phosphatidylglycerophosphatase A CJ12661_RS07665 PF01649 Ribosomal protein S20 CJ12661_RS07670 PF00472 RF-1 domain CJ12661_RS07670 PF03462 PCRF domain CJ12661_RS07675 PF01243 Pyridoxamine 5'-phosphate oxidase CJ12661_RS07675 PF10615 Protein of unknown function (DUF2470) CJ12661_RS07680 PF07715 TonB-dependent Receptor Plug Domain CJ12661_RS07680 PF00593 TonB dependent receptor CJ12661_RS07685 PF01032 FecCD transport family CJ12661_RS07690 PF00005 ABC transporter CJ12661_RS07695 PF01497 Periplasmic binding protein CJ12661_RS07705 PF00083 Sugar (and other) transporter CJ12661_RS07710 PF14815 NUDIX domain CJ12661_RS07710 PF00730 HhH-GPD superfamily base excision DNA repair protein CJ12661_RS07740 PF01872 RibD C-terminal domain CJ12661_RS07740 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJ12661_RS07750 PF03313 Serine dehydratase alpha chain CJ12661_RS07750 PF03315 Serine dehydratase beta chain CJ12661_RS07770 PF01618 MotA/TolQ/ExbB proton channel family CJ12661_RS07775 PF02472 Biopolymer transport protein ExbD/TolR CJ12661_RS07800 PF01264 Chorismate synthase CJ12661_RS07805 PF00035 Double-stranded RNA binding motif CJ12661_RS07805 PF14622 Ribonuclease-III-like CJ12661_RS07810 PF00075 RNase H CJ12661_RS07820 PF08275 DNA primase catalytic core, N-terminal domain CJ12661_RS07820 PF01807 CHC2 zinc finger CJ12661_RS07835 PF02875 Mur ligase family, glutamate ligase domain CJ12661_RS07835 PF08245 Mur ligase middle domain CJ12661_RS07840 PF02575 YbaB/EbfC DNA-binding family CJ12661_RS07850 PF00348 Polyprenyl synthetase CJ12661_RS07855 PF00456 Transketolase, thiamine diphosphate binding domain CJ12661_RS07855 PF02780 Transketolase, C-terminal domain CJ12661_RS07855 PF02779 Transketolase, pyrimidine binding domain CJ12661_RS07860 PF02405 Permease MlaE CJ12661_RS07865 PF00005 ABC transporter CJ12661_RS07875 PF02470 MlaD protein CJ12661_RS07875 PF03886 ABC-type transport auxiliary lipoprotein component CJ12661_RS07885 PF00557 Metallopeptidase family M24 CJ12661_RS07890 PF01177 Asp/Glu/Hydantoin racemase CJ12661_RS07895 PF00877 NlpC/P60 family CJ12661_RS07900 PF06965 Na+/H+ antiporter 1 CJ12661_RS07905 PF06965 Na+/H+ antiporter 1 CJ12661_RS07920 PF03239 Iron permease FTR1 family CJ12661_RS07925 PF10634 Fe2+ transport protein CJ12661_RS07940 PF12704 MacB-like periplasmic core domain CJ12661_RS07940 PF00005 ABC transporter CJ12661_RS07940 PF02687 FtsX-like permease family CJ12661_RS07945 PF00005 ABC transporter CJ12661_RS07995 PF14743 DNA ligase OB-like domain CJ12661_RS07995 PF01068 ATP dependent DNA ligase domain CJ12661_RS08010 PF03952 Enolase, N-terminal domain CJ12661_RS08010 PF00113 Enolase, C-terminal TIM barrel domain CJ12661_RS08015 PF00154 recA bacterial DNA recombination protein CJ12661_RS08020 PF02621 Menaquinone biosynthesis CJ12661_RS08025 PF01313 Bacterial export proteins, family 3 CJ12661_RS08030 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CJ12661_RS08040 PF00459 Inositol monophosphatase family CJ12661_RS08045 PF00285 Citrate synthase, C-terminal domain CJ12661_RS08055 PF04055 Radical SAM superfamily CJ12661_RS08055 PF06968 Biotin and Thiamin Synthesis associated domain CJ12661_RS08060 PF01131 DNA topoisomerase CJ12661_RS08060 PF01751 Toprim domain CJ12661_RS08060 PF01396 Topoisomerase DNA binding C4 zinc finger CJ12661_RS08070 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CJ12661_RS08070 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal CJ12661_RS08070 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CJ12661_RS08075 PF07690 Major Facilitator Superfamily CJ12661_RS08080 PF00344 SecY translocase CJ12661_RS08085 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CJ12661_RS08090 PF03719 Ribosomal protein S5, C-terminal domain CJ12661_RS08090 PF00333 Ribosomal protein S5, N-terminal domain CJ12661_RS08095 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CJ12661_RS08100 PF00347 Ribosomal protein L6 CJ12661_RS08105 PF00410 Ribosomal protein S8 CJ12661_RS08110 PF00253 Ribosomal protein S14p/S29e CJ12661_RS08115 PF00281 Ribosomal protein L5 CJ12661_RS08115 PF00673 ribosomal L5P family C-terminus CJ12661_RS08120 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CJ12661_RS08120 PF00467 KOW motif CJ12661_RS08125 PF00238 Ribosomal protein L14p/L23e CJ12661_RS08130 PF00366 Ribosomal protein S17 CJ12661_RS08135 PF00831 Ribosomal L29 protein CJ12661_RS08140 PF00252 Ribosomal protein L16p/L10e CJ12661_RS08145 PF07650 KH domain CJ12661_RS08145 PF00189 Ribosomal protein S3, C-terminal domain CJ12661_RS08150 PF00237 Ribosomal protein L22p/L17e CJ12661_RS08155 PF00203 Ribosomal protein S19 CJ12661_RS08160 PF00181 Ribosomal Proteins L2, RNA binding domain CJ12661_RS08160 PF03947 Ribosomal Proteins L2, C-terminal domain CJ12661_RS08165 PF00276 Ribosomal protein L23 CJ12661_RS08170 PF00573 Ribosomal protein L4/L1 family CJ12661_RS08175 PF00297 Ribosomal protein L3 CJ12661_RS08180 PF00338 Ribosomal protein S10p/S20e CJ12661_RS08185 PF01479 S4 domain CJ12661_RS08185 PF00849 RNA pseudouridylate synthase CJ12661_RS08190 PF17770 Ribonuclease J C-terminal domain CJ12661_RS08190 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJ12661_RS08190 PF00753 Metallo-beta-lactamase superfamily CJ12661_RS08195 PF00398 Ribosomal RNA adenine dimethylase CJ12661_RS08205 PF04055 Radical SAM superfamily CJ12661_RS08240 PF00694 Aconitase C-terminal domain CJ12661_RS08245 PF00330 Aconitase family (aconitate hydratase) CJ12661_RS08250 PF00180 Isocitrate/isopropylmalate dehydrogenase CJ12661_RS08255 PF08502 LeuA allosteric (dimerisation) domain CJ12661_RS08255 PF00682 HMGL-like CJ12661_RS08270 PF14489 QueF-like protein CJ12661_RS08275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ12661_RS08275 PF07196 Flagellin hook IN motif CJ12661_RS08275 PF00460 Flagella basal body rod protein CJ12661_RS08275 PF07559 Flagellar basal body protein FlaE CJ12661_RS08280 PF02075 Crossover junction endodeoxyribonuclease RuvC