locus-tag class description CJM129_RS00005 PF00308 Bacterial dnaA protein CJM129_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CJM129_RS00005 PF11638 DnaA N-terminal domain CJM129_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CJM129_RS00010 PF02767 DNA polymerase III beta subunit, central domain CJM129_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CJM129_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJM129_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CJM129_RS00015 PF00204 DNA gyrase B CJM129_RS00015 PF01751 Toprim domain CJM129_RS00030 PF03553 Na+/H+ antiporter family CJM129_RS00030 PF13726 Na+-H+ antiporter family CJM129_RS00035 PF01645 Conserved region in glutamate synthase CJM129_RS00035 PF00310 Glutamine amidotransferases class-II CJM129_RS00035 PF01493 GXGXG motif CJM129_RS00035 PF04898 Glutamate synthase central domain CJM129_RS00040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJM129_RS00040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJM129_RS00045 PF01351 Ribonuclease HII CJM129_RS00055 PF02915 Rubrerythrin CJM129_RS00060 PF00920 Dehydratase family CJM129_RS00075 PF06508 Queuosine biosynthesis protein QueC CJM129_RS00090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJM129_RS00090 PF12729 Four helix bundle sensory module for signal transduction CJM129_RS00090 PF00672 HAMP domain CJM129_RS00095 PF00034 Cytochrome c CJM129_RS00095 PF03150 Di-haem cytochrome c peroxidase CJM129_RS00100 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJM129_RS00105 PF00849 RNA pseudouridylate synthase CJM129_RS00110 PF10397 Adenylosuccinate lyase C-terminus CJM129_RS00110 PF00206 Lyase CJM129_RS00115 PF02867 Ribonucleotide reductase, barrel domain CJM129_RS00115 PF03477 ATP cone domain CJM129_RS00115 PF00317 Ribonucleotide reductase, all-alpha domain CJM129_RS00120 PF00375 Sodium:dicarboxylate symporter family CJM129_RS00125 PF02511 Thymidylate synthase complementing protein CJM129_RS00130 PF06418 CTP synthase N-terminus CJM129_RS00130 PF00117 Glutamine amidotransferase class-I CJM129_RS00135 PF02272 DHHA1 domain CJM129_RS00135 PF17768 RecJ OB domain CJM129_RS00135 PF01368 DHH family CJM129_RS00140 PF17763 Glutaminase/Asparaginase C-terminal domain CJM129_RS00140 PF00710 Asparaginase, N-terminal CJM129_RS00195 PF07690 Major Facilitator Superfamily CJM129_RS00215 PF00009 Elongation factor Tu GTP binding domain CJM129_RS00215 PF00679 Elongation factor G C-terminus CJM129_RS00215 PF03144 Elongation factor Tu domain 2 CJM129_RS00230 PF03963 Flagellar hook capping protein - N-terminal region CJM129_RS00235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJM129_RS00235 PF07559 Flagellar basal body protein FlaE CJM129_RS00235 PF00460 Flagella basal body rod protein CJM129_RS00260 PF00939 Sodium:sulfate symporter transmembrane region CJM129_RS00270 PF00939 Sodium:sulfate symporter transmembrane region CJM129_RS00310 PF04509 CheC-like family CJM129_RS00310 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJM129_RS00315 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJM129_RS00315 PF02154 Flagellar motor switch protein FliM CJM129_RS00320 PF04545 Sigma-70, region 4 CJM129_RS00320 PF04542 Sigma-70 region 2 CJM129_RS00320 PF04539 Sigma-70 region 3 CJM129_RS00330 PF10609 NUBPL iron-transfer P-loop NTPase CJM129_RS00335 PF00448 SRP54-type protein, GTPase domain CJM129_RS00340 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CJM129_RS00345 PF01220 Dehydroquinase class II CJM129_RS00350 PF01979 Amidohydrolase family CJM129_RS00355 PF01343 Peptidase family S49 CJM129_RS00375 PF01814 Hemerythrin HHE cation binding domain CJM129_RS00385 PF13183 4Fe-4S dicluster domain CJM129_RS00385 PF02589 LUD domain CJM129_RS00385 PF11870 Domain of unknown function (DUF3390) CJM129_RS00390 PF02754 Cysteine-rich domain CJM129_RS00395 PF02652 L-lactate permease CJM129_RS00400 PF03498 Cytolethal distending toxin A/C domain CJM129_RS00405 PF03372 Endonuclease/Exonuclease/phosphatase family CJM129_RS00410 PF03498 Cytolethal distending toxin A/C domain CJM129_RS00420 PF01654 Cytochrome bd terminal oxidase subunit I CJM129_RS00425 PF02322 Cytochrome bd terminal oxidase subunit II CJM129_RS00435 PF01177 Asp/Glu/Hydantoin racemase CJM129_RS00440 PF03167 Uracil DNA glycosylase superfamily CJM129_RS00445 PF10415 Fumarase C C-terminus CJM129_RS00445 PF00206 Lyase CJM129_RS00450 PF03605 Anaerobic c4-dicarboxylate membrane transporter CJM129_RS00480 PF00829 Ribosomal prokaryotic L21 protein CJM129_RS00485 PF01016 Ribosomal L27 protein CJM129_RS00490 PF01018 GTP1/OBG CJM129_RS00490 PF01926 50S ribosome-binding GTPase CJM129_RS00495 PF00696 Amino acid kinase family CJM129_RS00500 PF00551 Formyl transferase CJM129_RS00500 PF02911 Formyl transferase, C-terminal domain CJM129_RS00505 PF02237 Biotin protein ligase C terminal domain CJM129_RS00505 PF03099 Biotin/lipoate A/B protein ligase family CJM129_RS00505 PF08279 HTH domain CJM129_RS00510 PF13614 AAA domain CJM129_RS00515 PF02195 ParB-like nuclease domain CJM129_RS00515 PF17762 HTH domain found in ParB protein CJM129_RS00525 PF00430 ATP synthase B/B' CF(0) CJM129_RS00530 PF00213 ATP synthase delta (OSCP) subunit CJM129_RS00535 PF00306 ATP synthase alpha/beta chain, C terminal domain CJM129_RS00535 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJM129_RS00535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJM129_RS00540 PF00231 ATP synthase CJM129_RS00545 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJM129_RS00545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJM129_RS00550 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJM129_RS00555 PF01618 MotA/TolQ/ExbB proton channel family CJM129_RS00560 PF02472 Biopolymer transport protein ExbD/TolR CJM129_RS00575 PF00691 OmpA family CJM129_RS00575 PF00223 Photosystem I psaA/psaB protein CJM129_RS00585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJM129_RS00590 PF00698 Acyl transferase domain CJM129_RS00595 PF01048 Phosphorylase superfamily CJM129_RS00600 PF01171 PP-loop family CJM129_RS00615 PF02130 Uncharacterized protein family UPF0054 CJM129_RS00625 PF01207 Dihydrouridine synthase (Dus) CJM129_RS00635 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJM129_RS00640 PF02590 Predicted SPOUT methyltransferase CJM129_RS00645 PF17848 Acetyl-coA carboxylase zinc finger domain CJM129_RS00645 PF01039 Carboxyl transferase domain CJM129_RS00650 PF00459 Inositol monophosphatase family CJM129_RS00655 PF07244 Surface antigen variable number repeat CJM129_RS00655 PF01103 Surface antigen CJM129_RS00670 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CJM129_RS00680 PF00288 GHMP kinases N terminal domain CJM129_RS00690 PF00009 Elongation factor Tu GTP binding domain CJM129_RS00690 PF11987 Translation-initiation factor 2 CJM129_RS00690 PF04760 Translation initiation factor IF-2, N-terminal region CJM129_RS00695 PF02033 Ribosome-binding factor A CJM129_RS00700 PF17384 RimP C-terminal SH3 domain CJM129_RS00700 PF02576 RimP N-terminal domain CJM129_RS00705 PF12102 Domain of unknown function (DUF3578) CJM129_RS00705 PF07728 AAA domain (dynein-related subfamily) CJM129_RS00715 PF00950 ABC 3 transport family CJM129_RS00720 PF00005 ABC transporter CJM129_RS00730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJM129_RS00730 PF00672 HAMP domain CJM129_RS00730 PF02743 Cache domain CJM129_RS00740 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJM129_RS00745 PF00085 Thioredoxin CJM129_RS00750 PF02021 Uncharacterised protein family UPF0102 CJM129_RS00755 PF00742 Homoserine dehydrogenase CJM129_RS00755 PF03447 Homoserine dehydrogenase, NAD binding domain CJM129_RS00755 PF01842 ACT domain CJM129_RS00760 PF00155 Aminotransferase class I and II CJM129_RS00775 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJM129_RS00775 PF00588 SpoU rRNA Methylase family CJM129_RS00780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJM129_RS00785 PF01197 Ribosomal protein L31 CJM129_RS00790 PF04452 RNA methyltransferase CJM129_RS00815 PF04055 Radical SAM superfamily CJM129_RS00815 PF06463 Molybdenum Cofactor Synthesis C CJM129_RS00855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJM129_RS00855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJM129_RS00870 PF03435 Saccharopine dehydrogenase NADP binding domain CJM129_RS00870 PF16653 Saccharopine dehydrogenase C-terminal domain CJM129_RS00875 PF00005 ABC transporter CJM129_RS00875 PF08402 TOBE domain CJM129_RS00885 PF13416 Bacterial extracellular solute-binding protein CJM129_RS00900 PF07715 TonB-dependent Receptor Plug Domain CJM129_RS00900 PF00593 TonB dependent receptor CJM129_RS00905 PF01618 MotA/TolQ/ExbB proton channel family CJM129_RS00910 PF02472 Biopolymer transport protein ExbD/TolR CJM129_RS00920 PF05992 SbmA/BacA-like family CJM129_RS00925 PF01595 Cyclin M transmembrane N-terminal domain CJM129_RS00925 PF03471 Transporter associated domain CJM129_RS00925 PF00571 CBS domain CJM129_RS00935 PF08274 PhnA Zinc-Ribbon CJM129_RS00935 PF03831 PhnA domain CJM129_RS00940 PF03741 Integral membrane protein TerC family CJM129_RS00945 PF00551 Formyl transferase CJM129_RS00950 PF01256 Carbohydrate kinase CJM129_RS00950 PF03853 YjeF-related protein N-terminus CJM129_RS00960 PF13335 Magnesium chelatase, subunit ChlI C-terminal CJM129_RS00960 PF01078 Magnesium chelatase, subunit ChlI CJM129_RS00965 PF01327 Polypeptide deformylase CJM129_RS00970 PF00574 Clp protease CJM129_RS00975 PF05697 Bacterial trigger factor protein (TF) CJM129_RS00975 PF05698 Bacterial trigger factor protein (TF) C-terminus CJM129_RS00975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJM129_RS00980 PF01227 GTP cyclohydrolase I CJM129_RS00985 PF18269 T3SS EscN ATPase C-terminal domain CJM129_RS00985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJM129_RS00990 PF00156 Phosphoribosyl transferase domain CJM129_RS00995 PF05173 Dihydrodipicolinate reductase, C-terminus CJM129_RS00995 PF01113 Dihydrodipicolinate reductase, N-terminus CJM129_RS01000 PF12002 MgsA AAA+ ATPase C terminal CJM129_RS01000 PF01661 Macro domain CJM129_RS01000 PF16193 AAA C-terminal domain CJM129_RS01000 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJM129_RS01030 PF03169 OPT oligopeptide transporter protein CJM129_RS01035 PF02673 Bacitracin resistance protein BacA CJM129_RS01040 PF03129 Anticodon binding domain CJM129_RS01040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJM129_RS01040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJM129_RS01045 PF05198 Translation initiation factor IF-3, N-terminal domain CJM129_RS01045 PF00707 Translation initiation factor IF-3, C-terminal domain CJM129_RS01085 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJM129_RS01085 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJM129_RS01095 PF00696 Amino acid kinase family CJM129_RS01100 PF00202 Aminotransferase class-III CJM129_RS01110 PF00132 Bacterial transferase hexapeptide (six repeats) CJM129_RS01115 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CJM129_RS01115 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CJM129_RS01120 PF00268 Ribonucleotide reductase, small chain CJM129_RS01130 PF00156 Phosphoribosyl transferase domain CJM129_RS01135 PF01765 Ribosome recycling factor CJM129_RS01140 PF03840 Preprotein translocase SecG subunit CJM129_RS01145 PF01027 Inhibitor of apoptosis-promoting Bax1 CJM129_RS01150 PF00484 Carbonic anhydrase CJM129_RS01155 PF00924 Mechanosensitive ion channel CJM129_RS01160 PF01106 NifU-like domain CJM129_RS01160 PF04324 BFD-like [2Fe-2S] binding domain CJM129_RS01160 PF01592 NifU-like N terminal domain CJM129_RS01165 PF00266 Aminotransferase class-V CJM129_RS01180 PF01632 Ribosomal protein L35 CJM129_RS01185 PF00453 Ribosomal protein L20 CJM129_RS01210 PF00083 Sugar (and other) transporter CJM129_RS01220 PF01967 MoaC family CJM129_RS01225 PF04359 Protein of unknown function (DUF493) CJM129_RS01235 PF03372 Endonuclease/Exonuclease/phosphatase family CJM129_RS01240 PF00884 Sulfatase CJM129_RS01240 PF08019 Phosphoethanolamine transferase EptA/EptB CJM129_RS01245 PF01219 Prokaryotic diacylglycerol kinase CJM129_RS01255 PF04909 Amidohydrolase CJM129_RS01265 PF01209 ubiE/COQ5 methyltransferase family CJM129_RS01270 PF00672 HAMP domain CJM129_RS01270 PF02743 Cache domain CJM129_RS01270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJM129_RS01285 PF01145 SPFH domain / Band 7 family CJM129_RS01290 PF01063 Amino-transferase class IV CJM129_RS01295 PF01361 Tautomerase enzyme CJM129_RS01300 PF00578 AhpC/TSA family CJM129_RS01305 PF02677 Epoxyqueuosine reductase QueH CJM129_RS01310 PF07977 FabA-like domain CJM129_RS01315 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CJM129_RS01315 PF00132 Bacterial transferase hexapeptide (six repeats) CJM129_RS01320 PF07724 AAA domain (Cdc48 subfamily) CJM129_RS01320 PF10431 C-terminal, D2-small domain, of ClpB protein CJM129_RS01320 PF06689 ClpX C4-type zinc finger CJM129_RS01345 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJM129_RS01355 PF01584 CheW-like domain CJM129_RS01360 PF00072 Response regulator receiver domain CJM129_RS01360 PF01627 Hpt domain CJM129_RS01360 PF02895 Signal transducing histidine kinase, homodimeric domain CJM129_RS01360 PF01584 CheW-like domain CJM129_RS01360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJM129_RS01365 PF01584 CheW-like domain CJM129_RS01365 PF00072 Response regulator receiver domain CJM129_RS01375 PF03449 Transcription elongation factor, N-terminal CJM129_RS01375 PF01272 Transcription elongation factor, GreA/GreB, C-term CJM129_RS01380 PF02684 Lipid-A-disaccharide synthetase CJM129_RS01395 PF01975 Survival protein SurE CJM129_RS01405 PF02261 Aspartate decarboxylase CJM129_RS01410 PF02569 Pantoate-beta-alanine ligase CJM129_RS01415 PF02548 Ketopantoate hydroxymethyltransferase CJM129_RS01420 PF03459 TOBE domain CJM129_RS01420 PF00005 ABC transporter CJM129_RS01425 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS01440 PF08241 Methyltransferase domain CJM129_RS01440 PF04301 Protein of unknown function (DUF452) CJM129_RS01445 PF08241 Methyltransferase domain CJM129_RS01445 PF04301 Protein of unknown function (DUF452) CJM129_RS01450 PF00155 Aminotransferase class I and II CJM129_RS01455 PF00202 Aminotransferase class-III CJM129_RS01465 PF00893 Small Multidrug Resistance protein CJM129_RS01475 PF01386 Ribosomal L25p family CJM129_RS01475 PF14693 Ribosomal protein TL5, C-terminal domain CJM129_RS01480 PF01195 Peptidyl-tRNA hydrolase CJM129_RS01490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJM129_RS01490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJM129_RS01500 PF01817 Chorismate mutase type II CJM129_RS01500 PF01842 ACT domain CJM129_RS01500 PF00800 Prephenate dehydratase CJM129_RS01505 PF00155 Aminotransferase class I and II CJM129_RS01510 PF01514 Secretory protein of YscJ/FliF family CJM129_RS01510 PF08345 Flagellar M-ring protein C-terminal CJM129_RS01515 PF14841 FliG middle domain CJM129_RS01515 PF14842 FliG N-terminal domain CJM129_RS01515 PF01706 FliG C-terminal domain CJM129_RS01525 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CJM129_RS01525 PF02779 Transketolase, pyrimidine binding domain CJM129_RS01525 PF02780 Transketolase, C-terminal domain CJM129_RS01540 PF01209 ubiE/COQ5 methyltransferase family CJM129_RS01545 PF13742 OB-fold nucleic acid binding domain CJM129_RS01545 PF02601 Exonuclease VII, large subunit CJM129_RS01550 PF00266 Aminotransferase class-V CJM129_RS01555 PF01042 Endoribonuclease L-PSP CJM129_RS01560 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJM129_RS01560 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJM129_RS01565 PF02504 Fatty acid synthesis protein CJM129_RS01570 PF01783 Ribosomal L32p protein family CJM129_RS01580 PF00334 Nucleoside diphosphate kinase CJM129_RS01585 PF00037 4Fe-4S binding domain CJM129_RS01590 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJM129_RS01590 PF00578 AhpC/TSA family CJM129_RS01595 PF01312 FlhB HrpN YscU SpaS Family CJM129_RS01600 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJM129_RS01600 PF00691 OmpA family CJM129_RS01605 PF01618 MotA/TolQ/ExbB proton channel family CJM129_RS01610 PF00476 DNA polymerase family A CJM129_RS01610 PF01367 5'-3' exonuclease, C-terminal SAM fold CJM129_RS01610 PF01612 3'-5' exonuclease CJM129_RS01610 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJM129_RS01620 PF01156 Inosine-uridine preferring nucleoside hydrolase CJM129_RS01625 PF09335 SNARE associated Golgi protein CJM129_RS01630 PF17760 UvrA interaction domain CJM129_RS01630 PF17755 UvrA DNA-binding domain CJM129_RS01630 PF00005 ABC transporter CJM129_RS01635 PF01925 Sulfite exporter TauE/SafE CJM129_RS01645 PF04715 Anthranilate synthase component I, N terminal region CJM129_RS01645 PF00425 chorismate binding enzyme CJM129_RS01650 PF02885 Glycosyl transferase family, helical bundle domain CJM129_RS01650 PF00591 Glycosyl transferase family, a/b domain CJM129_RS01650 PF00117 Glutamine amidotransferase class-I CJM129_RS01655 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CJM129_RS01660 PF00291 Pyridoxal-phosphate dependent enzyme CJM129_RS01665 PF00290 Tryptophan synthase alpha chain CJM129_RS01675 PF04509 CheC-like family CJM129_RS01675 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJM129_RS01690 PF00037 4Fe-4S binding domain CJM129_RS01695 PF00072 Response regulator receiver domain CJM129_RS01695 PF00486 Transcriptional regulatory protein, C terminal CJM129_RS01705 PF02660 Glycerol-3-phosphate acyltransferase CJM129_RS01710 PF03150 Di-haem cytochrome c peroxidase CJM129_RS01710 PF00034 Cytochrome c CJM129_RS01715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJM129_RS01715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJM129_RS01715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJM129_RS01720 PF01252 Signal peptidase (SPase) II CJM129_RS01725 PF03653 Uncharacterised protein family (UPF0093) CJM129_RS01730 PF04055 Radical SAM superfamily CJM129_RS01730 PF06969 HemN C-terminal domain CJM129_RS01740 PF02321 Outer membrane efflux protein CJM129_RS01745 PF00873 AcrB/AcrD/AcrF family CJM129_RS01750 PF00529 HlyD membrane-fusion protein of T1SS CJM129_RS01750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJM129_RS01765 PF01165 Ribosomal protein S21 CJM129_RS01775 PF03738 Glutathionylspermidine synthase preATP-grasp CJM129_RS01780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJM129_RS01780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJM129_RS01785 PF04461 Protein of unknown function (DUF520) CJM129_RS01800 PF17862 AAA+ lid domain CJM129_RS01800 PF00004 ATPase family associated with various cellular activities (AAA) CJM129_RS01800 PF01434 Peptidase family M41 CJM129_RS01800 PF06480 FtsH Extracellular CJM129_RS01810 PF00174 Oxidoreductase molybdopterin binding domain CJM129_RS01820 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJM129_RS01825 PF01029 NusB family CJM129_RS01830 PF00885 6,7-dimethyl-8-ribityllumazine synthase CJM129_RS01835 PF00793 DAHP synthetase I family CJM129_RS01845 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CJM129_RS01845 PF01926 50S ribosome-binding GTPase CJM129_RS01850 PF01202 Shikimate kinase CJM129_RS01855 PF00579 tRNA synthetases class I (W and Y) CJM129_RS01860 PF02403 Seryl-tRNA synthetase N-terminal domain CJM129_RS01860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJM129_RS01875 PF00224 Pyruvate kinase, barrel domain CJM129_RS01875 PF02887 Pyruvate kinase, alpha/beta domain CJM129_RS01875 PF00391 PEP-utilising enzyme, mobile domain CJM129_RS01880 PF06039 Malate:quinone oxidoreductase (Mqo) CJM129_RS01885 PF03309 Type III pantothenate kinase CJM129_RS01895 PF15437 Plasminogen-binding protein pgbA C-terminal CJM129_RS01905 PF02686 Glu-tRNAGln amidotransferase C subunit CJM129_RS01915 PF01475 Ferric uptake regulator family CJM129_RS01920 PF00152 tRNA synthetases class II (D, K and N) CJM129_RS01920 PF01336 OB-fold nucleic acid binding domain CJM129_RS01925 PF00464 Serine hydroxymethyltransferase CJM129_RS01940 PF08501 Shikimate dehydrogenase substrate binding domain CJM129_RS01950 PF01790 Prolipoprotein diacylglyceryl transferase CJM129_RS01955 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CJM129_RS01960 PF00890 FAD binding domain CJM129_RS01960 PF02910 Fumarate reductase flavoprotein C-term CJM129_RS01965 PF13085 2Fe-2S iron-sulfur cluster binding domain CJM129_RS01965 PF13183 4Fe-4S dicluster domain CJM129_RS01970 PF12631 MnmE helical domain CJM129_RS01970 PF01926 50S ribosome-binding GTPase CJM129_RS01970 PF10396 GTP-binding protein TrmE N-terminus CJM129_RS01990 PF05199 GMC oxidoreductase CJM129_RS01990 PF00732 GMC oxidoreductase CJM129_RS02010 PF04264 YceI-like domain CJM129_RS02040 PF00005 ABC transporter CJM129_RS02040 PF12848 ABC transporter CJM129_RS02055 PF09186 Domain of unknown function (DUF1949) CJM129_RS02055 PF01205 Uncharacterized protein family UPF0029 CJM129_RS02095 PF08245 Mur ligase middle domain CJM129_RS02100 PF00953 Glycosyl transferase family 4 CJM129_RS02105 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CJM129_RS02105 PF01676 Metalloenzyme superfamily CJM129_RS02125 PF00890 FAD binding domain CJM129_RS02125 PF02910 Fumarate reductase flavoprotein C-term CJM129_RS02130 PF13183 4Fe-4S dicluster domain CJM129_RS02130 PF13085 2Fe-2S iron-sulfur cluster binding domain CJM129_RS02135 PF02754 Cysteine-rich domain CJM129_RS02145 PF00550 Phosphopantetheine attachment site CJM129_RS02150 PF02801 Beta-ketoacyl synthase, C-terminal domain CJM129_RS02150 PF00109 Beta-ketoacyl synthase, N-terminal domain CJM129_RS02155 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CJM129_RS02165 PF00293 NUDIX domain CJM129_RS02170 PF13426 PAS domain CJM129_RS02170 PF08447 PAS fold CJM129_RS02170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJM129_RS02180 PF00830 Ribosomal L28 family CJM129_RS02185 PF00834 Ribulose-phosphate 3 epimerase family CJM129_RS02190 PF14480 DNA polymerase III polC-type N-terminus I CJM129_RS02190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJM129_RS02190 PF00929 Exonuclease CJM129_RS02190 PF11490 DNA polymerase III polC-type N-terminus II CJM129_RS02190 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJM129_RS02190 PF14579 Helix-hairpin-helix motif CJM129_RS02190 PF02811 PHP domain CJM129_RS02195 PF01964 Radical SAM ThiC family CJM129_RS02215 PF04028 Domain of unknown function (DUF374) CJM129_RS02220 PF04055 Radical SAM superfamily CJM129_RS02220 PF01938 TRAM domain CJM129_RS02220 PF00919 Uncharacterized protein family UPF0004 CJM129_RS02230 PF13184 NusA-like KH domain CJM129_RS02230 PF08529 NusA N-terminal domain CJM129_RS02240 PF04055 Radical SAM superfamily CJM129_RS02245 PF05193 Peptidase M16 inactive domain CJM129_RS02250 PF00271 Helicase conserved C-terminal domain CJM129_RS02250 PF04851 Type III restriction enzyme, res subunit CJM129_RS02255 PF01152 Bacterial-like globin CJM129_RS02265 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS02270 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS02275 PF00005 ABC transporter CJM129_RS02300 PF03144 Elongation factor Tu domain 2 CJM129_RS02300 PF00009 Elongation factor Tu GTP binding domain CJM129_RS02300 PF03143 Elongation factor Tu C-terminal domain CJM129_RS02305 PF00471 Ribosomal protein L33 CJM129_RS02320 PF02357 Transcription termination factor nusG CJM129_RS02325 PF03946 Ribosomal protein L11, N-terminal domain CJM129_RS02325 PF00298 Ribosomal protein L11, RNA binding domain CJM129_RS02330 PF00687 Ribosomal protein L1p/L10e family CJM129_RS02335 PF00466 Ribosomal protein L10 CJM129_RS02340 PF00542 Ribosomal protein L7/L12 C-terminal domain CJM129_RS02340 PF16320 Ribosomal protein L7/L12 dimerisation domain CJM129_RS02345 PF04563 RNA polymerase beta subunit CJM129_RS02345 PF04561 RNA polymerase Rpb2, domain 2 CJM129_RS02345 PF04560 RNA polymerase Rpb2, domain 7 CJM129_RS02345 PF04565 RNA polymerase Rpb2, domain 3 CJM129_RS02345 PF10385 RNA polymerase beta subunit external 1 domain CJM129_RS02345 PF00562 RNA polymerase Rpb2, domain 6 CJM129_RS02350 PF04998 RNA polymerase Rpb1, domain 5 CJM129_RS02350 PF05000 RNA polymerase Rpb1, domain 4 CJM129_RS02350 PF00623 RNA polymerase Rpb1, domain 2 CJM129_RS02350 PF04997 RNA polymerase Rpb1, domain 1 CJM129_RS02350 PF04983 RNA polymerase Rpb1, domain 3 CJM129_RS02355 PF00164 Ribosomal protein S12/S23 CJM129_RS02360 PF00177 Ribosomal protein S7p/S5e CJM129_RS02365 PF03764 Elongation factor G, domain IV CJM129_RS02365 PF00009 Elongation factor Tu GTP binding domain CJM129_RS02365 PF03144 Elongation factor Tu domain 2 CJM129_RS02365 PF14492 Elongation Factor G, domain II CJM129_RS02365 PF00679 Elongation factor G C-terminus CJM129_RS02395 PF00218 Indole-3-glycerol phosphate synthase CJM129_RS02410 PF00909 Ammonium Transporter Family CJM129_RS02415 PF00762 Ferrochelatase CJM129_RS02420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJM129_RS02420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJM129_RS02425 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJM129_RS02430 PF01411 tRNA synthetases class II (A) CJM129_RS02430 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJM129_RS02430 PF02272 DHHA1 domain CJM129_RS02435 PF02545 Maf-like protein CJM129_RS02440 PF00905 Penicillin binding protein transpeptidase domain CJM129_RS02440 PF00912 Transglycosylase CJM129_RS02440 PF17092 Penicillin-binding protein OB-like domain CJM129_RS02445 PF10431 C-terminal, D2-small domain, of ClpB protein CJM129_RS02445 PF17871 AAA lid domain CJM129_RS02445 PF07724 AAA domain (Cdc48 subfamily) CJM129_RS02445 PF00004 ATPase family associated with various cellular activities (AAA) CJM129_RS02445 PF02861 Clp amino terminal domain, pathogenicity island component CJM129_RS02450 PF02583 Metal-sensitive transcriptional repressor CJM129_RS02455 PF03572 Peptidase family S41 CJM129_RS02455 PF13180 PDZ domain CJM129_RS02460 PF01259 SAICAR synthetase CJM129_RS02465 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CJM129_RS02480 PF01553 Acyltransferase CJM129_RS02485 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJM129_RS02490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJM129_RS02490 PF00183 Hsp90 protein CJM129_RS02495 PF00581 Rhodanese-like domain CJM129_RS02515 PF02049 Flagellar hook-basal body complex protein FliE CJM129_RS02520 PF00460 Flagella basal body rod protein CJM129_RS02520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJM129_RS02525 PF00460 Flagella basal body rod protein CJM129_RS02540 PF03971 Monomeric isocitrate dehydrogenase CJM129_RS02545 PF00056 lactate/malate dehydrogenase, NAD binding domain CJM129_RS02545 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJM129_RS02550 PF08442 ATP-grasp domain CJM129_RS02550 PF00549 CoA-ligase CJM129_RS02555 PF00549 CoA-ligase CJM129_RS02555 PF02629 CoA binding domain CJM129_RS02565 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CJM129_RS02565 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CJM129_RS02565 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CJM129_RS02570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJM129_RS02590 PF00348 Polyprenyl synthetase CJM129_RS02595 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CJM129_RS02595 PF01488 Shikimate / quinate 5-dehydrogenase CJM129_RS02595 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CJM129_RS02600 PF03129 Anticodon binding domain CJM129_RS02600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJM129_RS02600 PF04073 Aminoacyl-tRNA editing domain CJM129_RS02610 PF03900 Porphobilinogen deaminase, C-terminal domain CJM129_RS02610 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CJM129_RS02615 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJM129_RS02625 PF07196 Flagellin hook IN motif CJM129_RS02625 PF07195 Flagellar hook-associated protein 2 C-terminus CJM129_RS02625 PF02465 Flagellar hook-associated protein 2 N-terminus CJM129_RS02630 PF02561 Flagellar protein FliS CJM129_RS02645 PF01132 Elongation factor P (EF-P) OB domain CJM129_RS02645 PF08207 Elongation factor P (EF-P) KOW-like domain CJM129_RS02645 PF09285 Elongation factor P, C-terminal CJM129_RS02680 PF00171 Aldehyde dehydrogenase family CJM129_RS02685 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJM129_RS02700 PF03796 DnaB-like helicase C terminal domain CJM129_RS02700 PF00772 DnaB-like helicase N terminal domain CJM129_RS02765 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJM129_RS02765 PF00925 GTP cyclohydrolase II CJM129_RS02770 PF09424 Yqey-like protein CJM129_RS02775 PF00205 Thiamine pyrophosphate enzyme, central domain CJM129_RS02775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJM129_RS02775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJM129_RS02780 PF10369 Small subunit of acetolactate synthase CJM129_RS02785 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CJM129_RS02785 PF00132 Bacterial transferase hexapeptide (six repeats) CJM129_RS02790 PF02547 Queuosine biosynthesis protein CJM129_RS02795 PF00902 Sec-independent protein translocase protein (TatC) CJM129_RS02800 PF02416 mttA/Hcf106 family CJM129_RS02805 PF06969 HemN C-terminal domain CJM129_RS02805 PF04055 Radical SAM superfamily CJM129_RS02810 PF00293 NUDIX domain CJM129_RS02815 PF13840 ACT domain CJM129_RS02815 PF01842 ACT domain CJM129_RS02815 PF00696 Amino acid kinase family CJM129_RS02830 PF00809 Pterin binding enzyme CJM129_RS02835 PF03120 NAD-dependent DNA ligase OB-fold domain CJM129_RS02835 PF00533 BRCA1 C Terminus (BRCT) domain CJM129_RS02835 PF01653 NAD-dependent DNA ligase adenylation domain CJM129_RS02850 PF06574 FAD synthetase CJM129_RS02850 PF01687 Riboflavin kinase CJM129_RS02855 PF13847 Methyltransferase domain CJM129_RS02870 PF03458 UPF0126 domain CJM129_RS02880 PF00633 Helix-hairpin-helix motif CJM129_RS02880 PF10576 Iron-sulfur binding domain of endonuclease III CJM129_RS02880 PF00730 HhH-GPD superfamily base excision DNA repair protein CJM129_RS02890 PF01116 Fructose-bisphosphate aldolase class-II CJM129_RS02910 PF00209 Sodium:neurotransmitter symporter family CJM129_RS02915 PF03473 MOSC domain CJM129_RS02915 PF03475 3-alpha domain CJM129_RS02920 PF11412 Disulphide bond corrector protein DsbC CJM129_RS02920 PF02683 Cytochrome C biogenesis protein transmembrane region CJM129_RS02920 PF00085 Thioredoxin CJM129_RS02925 PF03976 Polyphosphate kinase 2 (PPK2) CJM129_RS02930 PF07687 Peptidase dimerisation domain CJM129_RS02930 PF01546 Peptidase family M20/M25/M40 CJM129_RS02935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJM129_RS02940 PF00005 ABC transporter CJM129_RS02940 PF02687 FtsX-like permease family CJM129_RS02940 PF12704 MacB-like periplasmic core domain CJM129_RS02945 PF02321 Outer membrane efflux protein CJM129_RS02960 PF03062 MBOAT, membrane-bound O-acyltransferase family CJM129_RS02965 PF00210 Ferritin-like domain CJM129_RS02970 PF12849 PBP superfamily domain CJM129_RS02975 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS02980 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS02985 PF00005 ABC transporter CJM129_RS02995 PF01554 MatE CJM129_RS03010 PF00708 Acylphosphatase CJM129_RS03010 PF17788 HypF Kae1-like domain CJM129_RS03010 PF01300 Telomere recombination CJM129_RS03010 PF07503 HypF finger CJM129_RS03015 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJM129_RS03020 PF01455 HupF/HypC family CJM129_RS03025 PF01924 Hydrogenase formation hypA family CJM129_RS03030 PF00586 AIR synthase related protein, N-terminal domain CJM129_RS03030 PF02769 AIR synthase related protein, C-terminal domain CJM129_RS03035 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CJM129_RS03050 PF00773 RNB domain CJM129_RS03055 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJM129_RS03055 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJM129_RS03065 PF17782 DprA winged helix domain CJM129_RS03065 PF02481 DNA recombination-mediator protein A CJM129_RS03070 PF03652 Holliday junction resolvase CJM129_RS03075 PF01189 16S rRNA methyltransferase RsmB/F CJM129_RS03075 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CJM129_RS03075 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CJM129_RS03080 PF01625 Peptide methionine sulfoxide reductase CJM129_RS03085 PF00719 Inorganic pyrophosphatase CJM129_RS03095 PF02938 GAD domain CJM129_RS03095 PF00152 tRNA synthetases class II (D, K and N) CJM129_RS03095 PF01336 OB-fold nucleic acid binding domain CJM129_RS03100 PF01513 ATP-NAD kinase CJM129_RS03105 PF13476 AAA domain CJM129_RS03110 PF00990 Diguanylate cyclase, GGDEF domain CJM129_RS03110 PF00072 Response regulator receiver domain CJM129_RS03115 PF01026 TatD related DNase CJM129_RS03120 PF01476 LysM domain CJM129_RS03120 PF00877 NlpC/P60 family CJM129_RS03125 PF05036 Sporulation related domain CJM129_RS03125 PF03330 Lytic transglycolase CJM129_RS03145 PF01926 50S ribosome-binding GTPase CJM129_RS03155 PF03717 Penicillin-binding Protein dimerisation domain CJM129_RS03155 PF00905 Penicillin binding protein transpeptidase domain CJM129_RS03160 PF00557 Metallopeptidase family M24 CJM129_RS03160 PF01321 Creatinase/Prolidase N-terminal domain CJM129_RS03165 PF00854 POT family CJM129_RS03170 PF00854 POT family CJM129_RS03175 PF00854 POT family CJM129_RS03185 PF00854 POT family CJM129_RS03200 PF07650 KH domain CJM129_RS03200 PF01926 50S ribosome-binding GTPase CJM129_RS03205 PF07724 AAA domain (Cdc48 subfamily) CJM129_RS03205 PF10431 C-terminal, D2-small domain, of ClpB protein CJM129_RS03210 PF00227 Proteasome subunit CJM129_RS03215 PF01281 Ribosomal protein L9, N-terminal domain CJM129_RS03215 PF03948 Ribosomal protein L9, C-terminal domain CJM129_RS03220 PF00764 Arginosuccinate synthase CJM129_RS03225 PF01479 S4 domain CJM129_RS03230 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CJM129_RS03235 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJM129_RS03235 PF00005 ABC transporter CJM129_RS03240 PF04552 Sigma-54, DNA binding domain CJM129_RS03240 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJM129_RS03240 PF04963 Sigma-54 factor, core binding domain CJM129_RS03245 PF03605 Anaerobic c4-dicarboxylate membrane transporter CJM129_RS03255 PF03814 Potassium-transporting ATPase A subunit CJM129_RS03265 PF03814 Potassium-transporting ATPase A subunit CJM129_RS03280 PF00271 Helicase conserved C-terminal domain CJM129_RS03280 PF04851 Type III restriction enzyme, res subunit CJM129_RS03280 PF02151 UvrB/uvrC motif CJM129_RS03280 PF12344 Ultra-violet resistance protein B CJM129_RS03280 PF17757 UvrB interaction domain CJM129_RS03300 PF00271 Helicase conserved C-terminal domain CJM129_RS03300 PF00270 DEAD/DEAH box helicase CJM129_RS03300 PF17764 3′ DNA-binding domain (3′BD) CJM129_RS03300 PF18074 Primosomal protein N C-terminal domain CJM129_RS03300 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CJM129_RS03310 PF04551 GcpE protein CJM129_RS03315 PF02107 Flagellar L-ring protein CJM129_RS03320 PF01515 Phosphate acetyl/butaryl transferase CJM129_RS03325 PF00871 Acetokinase family CJM129_RS03345 PF01795 MraW methylase family CJM129_RS03355 PF02491 SHS2 domain inserted in FTSA CJM129_RS03360 PF00091 Tubulin/FtsZ family, GTPase domain CJM129_RS03360 PF12327 FtsZ family, C-terminal domain CJM129_RS03365 PF00460 Flagella basal body rod protein CJM129_RS03365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJM129_RS03370 PF00460 Flagella basal body rod protein CJM129_RS03370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJM129_RS03375 PF03951 Glutamine synthetase, beta-Grasp domain CJM129_RS03375 PF00120 Glutamine synthetase, catalytic domain CJM129_RS03385 PF01136 Peptidase family U32 CJM129_RS03390 PF00731 AIR carboxylase CJM129_RS03400 PF02091 Glycyl-tRNA synthetase alpha subunit CJM129_RS03405 PF01784 NIF3 (NGG1p interacting factor 3) CJM129_RS03415 PF02390 Putative methyltransferase CJM129_RS03415 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CJM129_RS03420 PF00849 RNA pseudouridylate synthase CJM129_RS03425 PF02978 Signal peptide binding domain CJM129_RS03425 PF00448 SRP54-type protein, GTPase domain CJM129_RS03425 PF02881 SRP54-type protein, helical bundle domain CJM129_RS03430 PF00886 Ribosomal protein S16 CJM129_RS03440 PF01782 RimM N-terminal domain CJM129_RS03440 PF05239 PRC-barrel domain CJM129_RS03445 PF01746 tRNA (Guanine-1)-methyltransferase CJM129_RS03450 PF01245 Ribosomal protein L19 CJM129_RS03455 PF00576 HIUase/Transthyretin family CJM129_RS03460 PF01474 Class-II DAHP synthetase family CJM129_RS03465 PF03960 ArsC family CJM129_RS03470 PF02811 PHP domain CJM129_RS03470 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJM129_RS03470 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJM129_RS03470 PF14579 Helix-hairpin-helix motif CJM129_RS03475 PF01168 Alanine racemase, N-terminal domain CJM129_RS03480 PF00669 Bacterial flagellin N-terminal helical region CJM129_RS03490 PF05175 Methyltransferase small domain CJM129_RS03490 PF17827 PrmC N-terminal domain CJM129_RS03495 PF01435 Peptidase family M48 CJM129_RS03505 PF00994 Probable molybdopterin binding domain CJM129_RS03510 PF01544 CorA-like Mg2+ transporter protein CJM129_RS03530 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS03540 PF08402 TOBE domain CJM129_RS03540 PF00005 ABC transporter CJM129_RS03550 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJM129_RS03630 PF12323 Helix-turn-helix domain CJM129_RS03630 PF01385 Probable transposase CJM129_RS03630 PF07282 Putative transposase DNA-binding domain CJM129_RS03635 PF03544 Gram-negative bacterial TonB protein C-terminal CJM129_RS03640 PF00593 TonB dependent receptor CJM129_RS03640 PF07715 TonB-dependent Receptor Plug Domain CJM129_RS03650 PF01025 GrpE CJM129_RS03655 PF00012 Hsp70 protein CJM129_RS03660 PF02384 N-6 DNA Methylase CJM129_RS03660 PF12161 HsdM N-terminal domain CJM129_RS03665 PF01420 Type I restriction modification DNA specificity domain CJM129_RS03680 PF12706 Beta-lactamase superfamily domain CJM129_RS03690 PF00155 Aminotransferase class I and II CJM129_RS03695 PF00132 Bacterial transferase hexapeptide (six repeats) CJM129_RS03695 PF06426 Serine acetyltransferase, N-terminal CJM129_RS03700 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJM129_RS03700 PF17944 Arginine decarboxylase C-terminal helical extension CJM129_RS03700 PF17810 Arginine decarboxylase helical bundle domain CJM129_RS03705 PF03129 Anticodon binding domain CJM129_RS03705 PF13393 Histidyl-tRNA synthetase CJM129_RS03710 PF02223 Thymidylate kinase CJM129_RS03715 PF01467 Cytidylyltransferase-like CJM129_RS03720 PF02441 Flavoprotein CJM129_RS03730 PF03180 NLPA lipoprotein CJM129_RS03735 PF03180 NLPA lipoprotein CJM129_RS03740 PF03180 NLPA lipoprotein CJM129_RS03745 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS03750 PF00005 ABC transporter CJM129_RS03750 PF09383 NIL domain CJM129_RS03755 PF08264 Anticodon-binding domain of tRNA CJM129_RS03755 PF00133 tRNA synthetases class I (I, L, M and V) CJM129_RS03755 PF10458 Valyl tRNA synthetase tRNA binding arm CJM129_RS03765 PF00580 UvrD/REP helicase N-terminal domain CJM129_RS03765 PF13361 UvrD-like helicase C-terminal domain CJM129_RS03775 PF08534 Redoxin CJM129_RS03780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJM129_RS03780 PF00384 Molybdopterin oxidoreductase CJM129_RS03780 PF01568 Molydopterin dinucleotide binding domain CJM129_RS03785 PF12800 4Fe-4S binding domain CJM129_RS03785 PF12838 4Fe-4S dicluster domain CJM129_RS03790 PF13187 4Fe-4S dicluster domain CJM129_RS03790 PF12801 4Fe-4S binding domain CJM129_RS03795 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CJM129_RS03825 PF12627 Probable RNA and SrmB- binding site of polymerase A CJM129_RS03825 PF01743 Poly A polymerase head domain CJM129_RS03825 PF13735 tRNA nucleotidyltransferase domain 2 putative CJM129_RS03830 PF01842 ACT domain CJM129_RS03830 PF00551 Formyl transferase CJM129_RS03835 PF00266 Aminotransferase class-V CJM129_RS03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJM129_RS03845 PF00512 His Kinase A (phospho-acceptor) domain CJM129_RS03855 PF08245 Mur ligase middle domain CJM129_RS03855 PF02875 Mur ligase family, glutamate ligase domain CJM129_RS03870 PF07478 D-ala D-ala ligase C-terminus CJM129_RS03870 PF01820 D-ala D-ala ligase N-terminus CJM129_RS03875 PF01330 RuvA N terminal domain CJM129_RS03875 PF07499 RuvA, C-terminal domain CJM129_RS03885 PF03023 Lipid II flippase MurJ CJM129_RS03890 PF01406 tRNA synthetases class I (C) catalytic domain CJM129_RS03890 PF09190 DALR domain CJM129_RS03895 PF00664 ABC transporter transmembrane region CJM129_RS03895 PF00005 ABC transporter CJM129_RS03900 PF01180 Dihydroorotate dehydrogenase CJM129_RS03905 PF00675 Insulinase (Peptidase family M16) CJM129_RS03905 PF05193 Peptidase M16 inactive domain CJM129_RS03910 PF00701 Dihydrodipicolinate synthetase family CJM129_RS03925 PF00753 Metallo-beta-lactamase superfamily CJM129_RS03930 PF02540 NAD synthase CJM129_RS03935 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CJM129_RS03940 PF00291 Pyridoxal-phosphate dependent enzyme CJM129_RS03945 PF02348 Cytidylyltransferase CJM129_RS03955 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJM129_RS03960 PF00813 FliP family CJM129_RS03965 PF12804 MobA-like NTP transferase domain CJM129_RS03965 PF00132 Bacterial transferase hexapeptide (six repeats) CJM129_RS03970 PF02441 Flavoprotein CJM129_RS03970 PF04127 DNA / pantothenate metabolism flavoprotein CJM129_RS03980 PF01255 Putative undecaprenyl diphosphate synthase CJM129_RS03995 PF01416 tRNA pseudouridine synthase CJM129_RS04000 PF00291 Pyridoxal-phosphate dependent enzyme CJM129_RS04000 PF13291 ACT domain CJM129_RS04015 PF05958 tRNA (Uracil-5-)-methyltransferase CJM129_RS04020 PF03553 Na+/H+ antiporter family CJM129_RS04025 PF00106 short chain dehydrogenase CJM129_RS04035 PF00330 Aconitase family (aconitate hydratase) CJM129_RS04035 PF06434 Aconitate hydratase 2 N-terminus CJM129_RS04035 PF11791 Aconitate B N-terminal domain CJM129_RS04040 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJM129_RS04040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJM129_RS04050 PF00133 tRNA synthetases class I (I, L, M and V) CJM129_RS04050 PF09334 tRNA synthetases class I (M) CJM129_RS04050 PF01588 Putative tRNA binding domain CJM129_RS04060 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CJM129_RS04085 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJM129_RS04090 PF00149 Calcineurin-like phosphoesterase CJM129_RS04095 PF02666 Phosphatidylserine decarboxylase CJM129_RS04100 PF01312 FlhB HrpN YscU SpaS Family CJM129_RS04110 PF07690 Major Facilitator Superfamily CJM129_RS04125 PF00202 Aminotransferase class-III CJM129_RS04135 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CJM129_RS04135 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CJM129_RS04140 PF10502 Signal peptidase, peptidase S26 CJM129_RS04145 PF03453 MoeA N-terminal region (domain I and II) CJM129_RS04145 PF03454 MoeA C-terminal region (domain IV) CJM129_RS04145 PF00994 Probable molybdopterin binding domain CJM129_RS04150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJM129_RS04160 PF00117 Glutamine amidotransferase class-I CJM129_RS04160 PF02885 Glycosyl transferase family, helical bundle domain CJM129_RS04160 PF00591 Glycosyl transferase family, a/b domain CJM129_RS04165 PF04715 Anthranilate synthase component I, N terminal region CJM129_RS04165 PF00425 chorismate binding enzyme CJM129_RS04170 PF18644 Phage integrase SAM-like domain CJM129_RS04170 PF00589 Phage integrase family CJM129_RS04175 PF01323 DSBA-like thioredoxin domain CJM129_RS04180 PF02600 Disulfide bond formation protein DsbB CJM129_RS04210 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJM129_RS04245 PF00771 FHIPEP family CJM129_RS04250 PF02082 Transcriptional regulator CJM129_RS04255 PF00312 Ribosomal protein S15 CJM129_RS04260 PF17854 FtsK alpha domain CJM129_RS04260 PF09397 Ftsk gamma domain CJM129_RS04260 PF01580 FtsK/SpoIIIE family CJM129_RS04265 PF00700 Bacterial flagellin C-terminal helical region CJM129_RS04265 PF00669 Bacterial flagellin N-terminal helical region CJM129_RS04280 PF00005 ABC transporter CJM129_RS04280 PF16326 ABC transporter C-terminal domain CJM129_RS04280 PF12848 ABC transporter CJM129_RS04285 PF00989 PAS fold CJM129_RS04285 PF00512 His Kinase A (phospho-acceptor) domain CJM129_RS04285 PF16736 Single Cache-like CJM129_RS04285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJM129_RS04290 PF00072 Response regulator receiver domain CJM129_RS04290 PF00486 Transcriptional regulatory protein, C terminal CJM129_RS04295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJM129_RS04295 PF01842 ACT domain CJM129_RS04295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJM129_RS04305 PF00575 S1 RNA binding domain CJM129_RS04310 PF02401 LytB protein CJM129_RS04315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJM129_RS04320 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CJM129_RS04320 PF03147 Ferredoxin-fold anticodon binding domain CJM129_RS04320 PF03483 B3/4 domain CJM129_RS04320 PF01588 Putative tRNA binding domain CJM129_RS04320 PF03484 tRNA synthetase B5 domain CJM129_RS04325 PF01409 tRNA synthetases class II core domain (F) CJM129_RS04325 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CJM129_RS04330 PF01230 HIT domain CJM129_RS04345 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS04350 PF00005 ABC transporter CJM129_RS04355 PF01235 Sodium:alanine symporter family CJM129_RS04360 PF00588 SpoU rRNA Methylase family CJM129_RS04365 PF01168 Alanine racemase, N-terminal domain CJM129_RS04365 PF00842 Alanine racemase, C-terminal domain CJM129_RS04390 PF02630 SCO1/SenC CJM129_RS04395 PF00291 Pyridoxal-phosphate dependent enzyme CJM129_RS04400 PF00216 Bacterial DNA-binding protein CJM129_RS04410 PF03061 Thioesterase superfamily CJM129_RS04420 PF13722 5TM C-terminal transporter carbon starvation CstA CJM129_RS04420 PF02554 Carbon starvation protein CstA CJM129_RS04425 PF14572 Phosphoribosyl synthetase-associated domain CJM129_RS04425 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJM129_RS04430 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS04435 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS04440 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJM129_RS04445 PF00005 ABC transporter CJM129_RS04450 PF01739 CheR methyltransferase, SAM binding domain CJM129_RS04455 PF00072 Response regulator receiver domain CJM129_RS04455 PF01339 CheB methylesterase CJM129_RS04460 PF02502 Ribose/Galactose Isomerase CJM129_RS04470 PF00156 Phosphoribosyl transferase domain CJM129_RS04480 PF00883 Cytosol aminopeptidase family, catalytic domain CJM129_RS04485 PF06071 Protein of unknown function (DUF933) CJM129_RS04485 PF01926 50S ribosome-binding GTPase CJM129_RS04490 PF14698 Argininosuccinate lyase C-terminal CJM129_RS04490 PF00206 Lyase CJM129_RS04495 PF01293 Phosphoenolpyruvate carboxykinase CJM129_RS04500 PF02436 Conserved carboxylase domain CJM129_RS04500 PF00682 HMGL-like CJM129_RS04500 PF00364 Biotin-requiring enzyme CJM129_RS04505 PF00209 Sodium:neurotransmitter symporter family CJM129_RS04510 PF00209 Sodium:neurotransmitter symporter family CJM129_RS04515 PF00137 ATP synthase subunit C CJM129_RS04530 PF00501 AMP-binding enzyme CJM129_RS04530 PF01553 Acyltransferase CJM129_RS04560 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS04570 PF01043 SecA preprotein cross-linking domain CJM129_RS04570 PF02810 SEC-C motif CJM129_RS04570 PF07517 SecA DEAD-like domain CJM129_RS04570 PF07516 SecA Wing and Scaffold domain CJM129_RS04575 PF03548 Outer membrane lipoprotein carrier protein LolA CJM129_RS04585 PF02689 Helicase CJM129_RS04585 PF05970 PIF1-like helicase CJM129_RS04595 PF00795 Carbon-nitrogen hydrolase CJM129_RS04600 PF16916 Dimerisation domain of Zinc Transporter CJM129_RS04600 PF01545 Cation efflux family CJM129_RS04605 PF04371 Porphyromonas-type peptidyl-arginine deiminase CJM129_RS04615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJM129_RS04615 PF02743 Cache domain CJM129_RS04615 PF00672 HAMP domain CJM129_RS04625 PF02142 MGS-like domain CJM129_RS04625 PF01808 AICARFT/IMPCHase bienzyme CJM129_RS04630 PF05099 Tellurite resistance protein TerB CJM129_RS04630 PF00226 DnaJ domain CJM129_RS04635 PF00586 AIR synthase related protein, N-terminal domain CJM129_RS04635 PF02769 AIR synthase related protein, C-terminal domain CJM129_RS04635 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CJM129_RS04640 PF10396 GTP-binding protein TrmE N-terminus CJM129_RS04640 PF12631 MnmE helical domain CJM129_RS04640 PF01926 50S ribosome-binding GTPase CJM129_RS04650 PF14849 YidC periplasmic domain CJM129_RS04650 PF02096 60Kd inner membrane protein CJM129_RS04655 PF01809 Putative membrane protein insertion efficiency factor CJM129_RS04660 PF00825 Ribonuclease P CJM129_RS04665 PF00468 Ribosomal protein L34 CJM129_RS04685 PF03061 Thioesterase superfamily CJM129_RS04745 PF08003 Protein of unknown function (DUF1698) CJM129_RS04760 PF00565 Staphylococcal nuclease homologue CJM129_RS04765 PF01546 Peptidase family M20/M25/M40 CJM129_RS04765 PF07687 Peptidase dimerisation domain CJM129_RS04770 PF00083 Sugar (and other) transporter CJM129_RS04770 PF08946 Osmosensory transporter coiled coil CJM129_RS04775 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJM129_RS04780 PF16668 Adhesin from Campylobacter CJM129_RS04785 PF03883 Peroxide stress protein YaaA CJM129_RS04790 PF07687 Peptidase dimerisation domain CJM129_RS04790 PF01546 Peptidase family M20/M25/M40 CJM129_RS04795 PF07690 Major Facilitator Superfamily CJM129_RS04810 PF17437 Family of unknown function (DUF5416) CJM129_RS04815 PF02665 Nitrate reductase gamma subunit CJM129_RS04815 PF13183 4Fe-4S dicluster domain CJM129_RS04815 PF02754 Cysteine-rich domain CJM129_RS04820 PF06969 HemN C-terminal domain CJM129_RS04820 PF04055 Radical SAM superfamily CJM129_RS04825 PF10788 Protein of unknown function (DUF2603) CJM129_RS04830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJM129_RS04830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJM129_RS04835 PF00490 Delta-aminolevulinic acid dehydratase CJM129_RS04840 PF00925 GTP cyclohydrolase II CJM129_RS04845 PF02527 rRNA small subunit methyltransferase G CJM129_RS04855 PF03601 Conserved hypothetical protein 698 CJM129_RS04860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJM129_RS04860 PF03466 LysR substrate binding domain CJM129_RS04865 PF04539 Sigma-70 region 3 CJM129_RS04865 PF04545 Sigma-70, region 4 CJM129_RS04865 PF00140 Sigma-70 factor, region 1.2 CJM129_RS04865 PF04542 Sigma-70 region 2 CJM129_RS04885 PF00004 ATPase family associated with various cellular activities (AAA) CJM129_RS04885 PF01434 Peptidase family M41 CJM129_RS04885 PF06480 FtsH Extracellular CJM129_RS04885 PF17862 AAA+ lid domain CJM129_RS04890 PF04055 Radical SAM superfamily CJM129_RS04890 PF00919 Uncharacterized protein family UPF0004 CJM129_RS04900 PF01761 3-dehydroquinate synthase CJM129_RS04910 PF01702 Queuine tRNA-ribosyltransferase CJM129_RS04930 PF18644 Phage integrase SAM-like domain CJM129_RS04930 PF00589 Phage integrase family CJM129_RS05065 PF03193 RsgA GTPase CJM129_RS05065 PF16745 RsgA N-terminal domain CJM129_RS05070 PF05638 Type VI secretion system effector, Hcp CJM129_RS05100 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CJM129_RS05120 PF04717 Type VI secretion system, phage-baseplate injector CJM129_RS05245 PF04717 Type VI secretion system, phage-baseplate injector CJM129_RS05330 PF01578 Cytochrome C assembly protein CJM129_RS05330 PF05140 ResB-like family CJM129_RS05335 PF00005 ABC transporter CJM129_RS05340 PF00005 ABC transporter CJM129_RS05340 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJM129_RS05345 PF11862 Domain of unknown function (DUF3382) CJM129_RS05345 PF02653 Branched-chain amino acid transport system / permease component CJM129_RS05350 PF02653 Branched-chain amino acid transport system / permease component CJM129_RS05355 PF13458 Periplasmic binding protein CJM129_RS05360 PF13458 Periplasmic binding protein CJM129_RS05380 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJM129_RS05380 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJM129_RS05385 PF00072 Response regulator receiver domain CJM129_RS05385 PF00158 Sigma-54 interaction domain CJM129_RS05400 PF03989 DNA gyrase C-terminal domain, beta-propeller CJM129_RS05400 PF00521 DNA gyrase/topoisomerase IV, subunit A CJM129_RS05415 PF06421 GTP-binding protein LepA C-terminus CJM129_RS05415 PF03144 Elongation factor Tu domain 2 CJM129_RS05415 PF00009 Elongation factor Tu GTP binding domain CJM129_RS05415 PF00679 Elongation factor G C-terminus CJM129_RS05425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJM129_RS05425 PF00529 HlyD membrane-fusion protein of T1SS CJM129_RS05430 PF00873 AcrB/AcrD/AcrF family CJM129_RS05440 PF04376 Arginine-tRNA-protein transferase, N terminus CJM129_RS05440 PF04377 Arginine-tRNA-protein transferase, C terminus CJM129_RS05450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJM129_RS05450 PF02785 Biotin carboxylase C-terminal domain CJM129_RS05450 PF00289 Biotin carboxylase, N-terminal domain CJM129_RS05455 PF01098 Cell cycle protein CJM129_RS05460 PF04101 Glycosyltransferase family 28 C-terminal domain CJM129_RS05460 PF03033 Glycosyltransferase family 28 N-terminal domain CJM129_RS05475 PF12833 Helix-turn-helix domain CJM129_RS05480 PF02581 Thiamine monophosphate synthase CJM129_RS05485 PF04055 Radical SAM superfamily CJM129_RS05485 PF06968 Biotin and Thiamin Synthesis associated domain CJM129_RS05490 PF05690 Thiazole biosynthesis protein ThiG CJM129_RS05495 PF00899 ThiF family CJM129_RS05495 PF00581 Rhodanese-like domain CJM129_RS05505 PF01546 Peptidase family M20/M25/M40 CJM129_RS05505 PF07687 Peptidase dimerisation domain CJM129_RS05515 PF02146 Sir2 family CJM129_RS05535 PF08245 Mur ligase middle domain CJM129_RS05535 PF02875 Mur ligase family, glutamate ligase domain CJM129_RS05535 PF01225 Mur ligase family, catalytic domain CJM129_RS05555 PF00571 CBS domain CJM129_RS05555 PF00478 IMP dehydrogenase / GMP reductase domain CJM129_RS05560 PF01425 Amidase CJM129_RS05570 PF08264 Anticodon-binding domain of tRNA CJM129_RS05570 PF00133 tRNA synthetases class I (I, L, M and V) CJM129_RS05575 PF00994 Probable molybdopterin binding domain CJM129_RS05575 PF02464 Competence-damaged protein CJM129_RS05585 PF00881 Nitroreductase family CJM129_RS05590 PF00881 Nitroreductase family CJM129_RS05595 PF00881 Nitroreductase family CJM129_RS05600 PF01066 CDP-alcohol phosphatidyltransferase CJM129_RS05605 PF17820 PDZ domain CJM129_RS05605 PF02163 Peptidase family M50 CJM129_RS05610 PF04393 Protein of unknown function (DUF535) CJM129_RS05615 PF01250 Ribosomal protein S6 CJM129_RS05620 PF00436 Single-strand binding protein family CJM129_RS05625 PF01084 Ribosomal protein S18 CJM129_RS05630 PF05362 Lon protease (S16) C-terminal proteolytic domain CJM129_RS05630 PF00004 ATPase family associated with various cellular activities (AAA) CJM129_RS05630 PF02190 ATP-dependent protease La (LON) substrate-binding domain CJM129_RS05640 PF02623 FliW protein CJM129_RS05645 PF03807 NADP oxidoreductase coenzyme F420-dependent CJM129_RS05645 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJM129_RS05670 PF02581 Thiamine monophosphate synthase CJM129_RS05675 PF08543 Phosphomethylpyrimidine kinase CJM129_RS05690 PF02559 CarD-like/TRCF domain CJM129_RS05690 PF17757 UvrB interaction domain CJM129_RS05690 PF00271 Helicase conserved C-terminal domain CJM129_RS05690 PF00270 DEAD/DEAH box helicase CJM129_RS05690 PF03461 TRCF domain CJM129_RS05700 PF04225 Opacity-associated protein A LysM-like domain CJM129_RS05700 PF01551 Peptidase family M23 CJM129_RS05705 PF02875 Mur ligase family, glutamate ligase domain CJM129_RS05705 PF08245 Mur ligase middle domain CJM129_RS05720 PF09334 tRNA synthetases class I (M) CJM129_RS05720 PF13603 Leucyl-tRNA synthetase, Domain 2 CJM129_RS05720 PF00133 tRNA synthetases class I (I, L, M and V) CJM129_RS05725 PF02355 Protein export membrane protein CJM129_RS05725 PF07549 SecD/SecF GG Motif CJM129_RS05730 PF02355 Protein export membrane protein CJM129_RS05735 PF02699 Preprotein translocase subunit CJM129_RS05745 PF00438 S-adenosylmethionine synthetase, N-terminal domain CJM129_RS05745 PF02772 S-adenosylmethionine synthetase, central domain CJM129_RS05745 PF02773 S-adenosylmethionine synthetase, C-terminal domain CJM129_RS05750 PF00375 Sodium:dicarboxylate symporter family CJM129_RS05755 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJM129_RS05755 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJM129_RS05760 PF08439 Oligopeptidase F CJM129_RS05760 PF01432 Peptidase family M3 CJM129_RS05770 PF00580 UvrD/REP helicase N-terminal domain CJM129_RS05770 PF13361 UvrD-like helicase C-terminal domain CJM129_RS05780 PF02599 Global regulator protein family CJM129_RS05785 PF00288 GHMP kinases N terminal domain CJM129_RS05790 PF01668 SmpB protein CJM129_RS05800 PF02617 ATP-dependent Clp protease adaptor protein ClpS CJM129_RS05805 PF10431 C-terminal, D2-small domain, of ClpB protein CJM129_RS05805 PF17871 AAA lid domain CJM129_RS05805 PF02861 Clp amino terminal domain, pathogenicity island component CJM129_RS05805 PF00004 ATPase family associated with various cellular activities (AAA) CJM129_RS05805 PF07724 AAA domain (Cdc48 subfamily) CJM129_RS05810 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CJM129_RS05815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJM129_RS05815 PF08447 PAS fold CJM129_RS05815 PF13426 PAS domain CJM129_RS05820 PF01914 MarC family integral membrane protein CJM129_RS05830 PF04305 Protein of unknown function (DUF455) CJM129_RS05835 PF01066 CDP-alcohol phosphatidyltransferase CJM129_RS05845 PF01434 Peptidase family M41 CJM129_RS05845 PF00004 ATPase family associated with various cellular activities (AAA) CJM129_RS05845 PF17862 AAA+ lid domain CJM129_RS05855 PF00072 Response regulator receiver domain CJM129_RS05865 PF02719 Polysaccharide biosynthesis protein CJM129_RS05870 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJM129_RS05875 PF17836 PglD N-terminal domain CJM129_RS05875 PF00132 Bacterial transferase hexapeptide (six repeats) CJM129_RS05880 PF02397 Bacterial sugar transferase CJM129_RS05885 PF00534 Glycosyl transferases group 1 CJM129_RS05885 PF13477 Glycosyl transferase 4-like CJM129_RS05890 PF02516 Oligosaccharyl transferase STT3 subunit CJM129_RS05890 PF18527 STT3/PglB C-terminal beta-barrel domain CJM129_RS05895 PF13439 Glycosyltransferase Family 4 CJM129_RS05895 PF00534 Glycosyl transferases group 1 CJM129_RS05900 PF00535 Glycosyl transferase family 2 CJM129_RS05905 PF00534 Glycosyl transferases group 1 CJM129_RS05905 PF13439 Glycosyltransferase Family 4 CJM129_RS05910 PF00664 ABC transporter transmembrane region CJM129_RS05910 PF00005 ABC transporter CJM129_RS05915 PF16363 GDP-mannose 4,6 dehydratase CJM129_RS05925 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJM129_RS05930 PF03279 Bacterial lipid A biosynthesis acyltransferase CJM129_RS05935 PF00535 Glycosyl transferase family 2 CJM129_RS05940 PF00535 Glycosyl transferase family 2 CJM129_RS05940 PF01501 Glycosyl transferase family 8 CJM129_RS05950 PF01501 Glycosyl transferase family 8 CJM129_RS05950 PF00535 Glycosyl transferase family 2 CJM129_RS05955 PF06002 Alpha-2,3-sialyltransferase (CST-I) CJM129_RS05960 PF08666 SAF domain CJM129_RS05960 PF03102 NeuB family CJM129_RS05965 PF02350 UDP-N-acetylglucosamine 2-epimerase CJM129_RS05975 PF13472 GDSL-like Lipase/Acylhydrolase family CJM129_RS05975 PF02348 Cytidylyltransferase CJM129_RS05980 PF00132 Bacterial transferase hexapeptide (six repeats) CJM129_RS05985 PF00535 Glycosyl transferase family 2 CJM129_RS05995 PF13580 SIS domain CJM129_RS06000 PF01467 Cytidylyltransferase-like CJM129_RS06000 PF00294 pfkB family carbohydrate kinase CJM129_RS06005 PF01370 NAD dependent epimerase/dehydratase family CJM129_RS06010 PF08645 Polynucleotide kinase 3 phosphatase CJM129_RS06025 PF00403 Heavy-metal-associated domain CJM129_RS06030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJM129_RS06030 PF07497 Rho termination factor, RNA-binding domain CJM129_RS06030 PF07498 Rho termination factor, N-terminal domain CJM129_RS06035 PF12170 DNA polymerase III tau subunit V interacting with alpha CJM129_RS06035 PF12169 DNA polymerase III subunits gamma and tau domain III CJM129_RS06055 PF00403 Heavy-metal-associated domain CJM129_RS06075 PF12821 Threonine/Serine exporter, ThrE CJM129_RS06075 PF06738 Putative threonine/serine exporter CJM129_RS06085 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJM129_RS06085 PF00056 lactate/malate dehydrogenase, NAD binding domain CJM129_RS06090 PF09335 SNARE associated Golgi protein CJM129_RS06105 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJM129_RS06110 PF01709 Transcriptional regulator CJM129_RS06115 PF00893 Small Multidrug Resistance protein CJM129_RS06120 PF00893 Small Multidrug Resistance protein CJM129_RS06125 PF05746 DALR anticodon binding domain CJM129_RS06125 PF00750 tRNA synthetases class I (R) CJM129_RS06125 PF03485 Arginyl tRNA synthetase N terminal domain CJM129_RS06130 PF02416 mttA/Hcf106 family CJM129_RS06135 PF00625 Guanylate kinase CJM129_RS06145 PF01311 Bacterial export proteins, family 1 CJM129_RS06150 PF00005 ABC transporter CJM129_RS06155 PF00889 Elongation factor TS CJM129_RS06160 PF00318 Ribosomal protein S2 CJM129_RS06175 PF00033 Cytochrome b/b6/petB CJM129_RS06175 PF00032 Cytochrome b(C-terminal)/b6/petD CJM129_RS06180 PF00355 Rieske [2Fe-2S] domain CJM129_RS06180 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CJM129_RS06185 PF02040 Arsenical pump membrane protein CJM129_RS06190 PF13932 GidA associated domain CJM129_RS06190 PF01134 Glucose inhibited division protein A CJM129_RS06200 PF08447 PAS fold CJM129_RS06200 PF13426 PAS domain CJM129_RS06200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJM129_RS06210 PF00375 Sodium:dicarboxylate symporter family CJM129_RS06220 PF01384 Phosphate transporter family CJM129_RS06225 PF01979 Amidohydrolase family CJM129_RS06230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJM129_RS06230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJM129_RS06235 PF02637 GatB domain CJM129_RS06235 PF02934 GatB/GatE catalytic domain CJM129_RS06240 PF02664 S-Ribosylhomocysteinase (LuxS) CJM129_RS06245 PF03171 2OG-Fe(II) oxygenase superfamily CJM129_RS06245 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CJM129_RS06250 PF03180 NLPA lipoprotein CJM129_RS06255 PF08267 Cobalamin-independent synthase, N-terminal domain CJM129_RS06255 PF01717 Cobalamin-independent synthase, Catalytic domain CJM129_RS06260 PF02219 Methylenetetrahydrofolate reductase CJM129_RS06270 PF00119 ATP synthase A chain CJM129_RS06275 PF18073 Rubredoxin metal binding domain CJM129_RS06280 PF00448 SRP54-type protein, GTPase domain CJM129_RS06295 PF01966 HD domain CJM129_RS06295 PF12072 Domain of unknown function (DUF3552) CJM129_RS06310 PF03631 Virulence factor BrkB CJM129_RS06315 PF01565 FAD binding domain CJM129_RS06315 PF02913 FAD linked oxidases, C-terminal domain CJM129_RS06325 PF01551 Peptidase family M23 CJM129_RS06325 PF08525 Opacity-associated protein A N-terminal motif CJM129_RS06325 PF01476 LysM domain CJM129_RS06335 PF02578 Multi-copper polyphenol oxidoreductase laccase CJM129_RS06340 PF00677 Lumazine binding domain CJM129_RS06350 PF00166 Chaperonin 10 Kd subunit CJM129_RS06355 PF00118 TCP-1/cpn60 chaperonin family CJM129_RS06360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJM129_RS06365 PF00072 Response regulator receiver domain CJM129_RS06365 PF00486 Transcriptional regulatory protein, C terminal CJM129_RS06390 PF00486 Transcriptional regulatory protein, C terminal CJM129_RS06390 PF00072 Response regulator receiver domain CJM129_RS06395 PF00595 PDZ domain CJM129_RS06400 PF00226 DnaJ domain CJM129_RS06400 PF01556 DnaJ C terminal domain CJM129_RS06405 PF13411 MerR HTH family regulatory protein CJM129_RS06410 PF02254 TrkA-N domain CJM129_RS06410 PF00999 Sodium/hydrogen exchanger family CJM129_RS06420 PF13419 Haloacid dehalogenase-like hydrolase CJM129_RS06425 PF02092 Glycyl-tRNA synthetase beta subunit CJM129_RS06430 PF01551 Peptidase family M23 CJM129_RS06440 PF02541 Ppx/GppA phosphatase family CJM129_RS06445 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CJM129_RS06450 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CJM129_RS06460 PF07690 Major Facilitator Superfamily CJM129_RS06470 PF01208 Uroporphyrinogen decarboxylase (URO-D) CJM129_RS06475 PF04055 Radical SAM superfamily CJM129_RS06485 PF08459 UvrC Helix-hairpin-helix N-terminal CJM129_RS06485 PF01541 GIY-YIG catalytic domain CJM129_RS06485 PF02151 UvrB/uvrC motif CJM129_RS06495 PF02540 NAD synthase CJM129_RS06495 PF00117 Glutamine amidotransferase class-I CJM129_RS06495 PF00958 GMP synthase C terminal domain CJM129_RS06505 PF02844 Phosphoribosylglycinamide synthetase, N domain CJM129_RS06505 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CJM129_RS06505 PF02843 Phosphoribosylglycinamide synthetase, C domain CJM129_RS06520 PF03725 3' exoribonuclease family, domain 2 CJM129_RS06520 PF00575 S1 RNA binding domain CJM129_RS06520 PF00013 KH domain CJM129_RS06520 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CJM129_RS06520 PF01138 3' exoribonuclease family, domain 1 CJM129_RS06535 PF07690 Major Facilitator Superfamily CJM129_RS06540 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJM129_RS06545 PF05538 Campylobacter major outer membrane protein CJM129_RS06550 PF00226 DnaJ domain CJM129_RS06550 PF01556 DnaJ C terminal domain CJM129_RS06550 PF00684 DnaJ central domain CJM129_RS06555 PF00072 Response regulator receiver domain CJM129_RS06555 PF00486 Transcriptional regulatory protein, C terminal CJM129_RS06565 PF02132 RecR protein CJM129_RS06565 PF13662 Toprim domain CJM129_RS06570 PF01750 Hydrogenase maturation protease CJM129_RS06575 PF01292 Prokaryotic cytochrome b561 CJM129_RS06580 PF00374 Nickel-dependent hydrogenase CJM129_RS06585 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJM129_RS06585 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJM129_RS06585 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJM129_RS06590 PF01266 FAD dependent oxidoreductase CJM129_RS06590 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CJM129_RS06595 PF11741 AMIN domain CJM129_RS06595 PF01520 N-acetylmuramoyl-L-alanine amidase CJM129_RS06605 PF00579 tRNA synthetases class I (W and Y) CJM129_RS06610 PF13291 ACT domain CJM129_RS06610 PF04607 Region found in RelA / SpoT proteins CJM129_RS06610 PF02824 TGS domain CJM129_RS06615 PF01192 RNA polymerase Rpb6 CJM129_RS06620 PF00696 Amino acid kinase family CJM129_RS06635 PF00005 ABC transporter CJM129_RS06635 PF09383 NIL domain CJM129_RS06640 PF02390 Putative methyltransferase CJM129_RS06650 PF00849 RNA pseudouridylate synthase CJM129_RS06650 PF01479 S4 domain CJM129_RS06655 PF01098 Cell cycle protein CJM129_RS06665 PF13356 Arm DNA-binding domain CJM129_RS06665 PF00589 Phage integrase family CJM129_RS06680 PF01555 DNA methylase CJM129_RS06765 PF11490 DNA polymerase III polC-type N-terminus II CJM129_RS06765 PF00929 Exonuclease CJM129_RS06765 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJM129_RS06765 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJM129_RS06765 PF02811 PHP domain CJM129_RS06765 PF14579 Helix-hairpin-helix motif CJM129_RS06765 PF01336 OB-fold nucleic acid binding domain CJM129_RS06925 PF02386 Cation transport protein CJM129_RS06930 PF02254 TrkA-N domain CJM129_RS06930 PF02080 TrkA-C domain CJM129_RS06935 PF02621 Menaquinone biosynthesis CJM129_RS06945 PF01515 Phosphate acetyl/butaryl transferase CJM129_RS06945 PF03949 Malic enzyme, NAD binding domain CJM129_RS06945 PF00390 Malic enzyme, N-terminal domain CJM129_RS06950 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJM129_RS06960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJM129_RS06960 PF02785 Biotin carboxylase C-terminal domain CJM129_RS06960 PF00289 Biotin carboxylase, N-terminal domain CJM129_RS06965 PF00364 Biotin-requiring enzyme CJM129_RS06970 PF00692 dUTPase CJM129_RS06975 PF02719 Polysaccharide biosynthesis protein CJM129_RS06980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJM129_RS07015 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJM129_RS07015 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJM129_RS07030 PF00668 Condensation domain CJM129_RS07030 PF13193 AMP-binding enzyme C-terminal domain CJM129_RS07030 PF00501 AMP-binding enzyme CJM129_RS07030 PF00550 Phosphopantetheine attachment site CJM129_RS07050 PF02348 Cytidylyltransferase CJM129_RS07060 PF13302 Acetyltransferase (GNAT) domain CJM129_RS07065 PF00977 Histidine biosynthesis protein CJM129_RS07070 PF00117 Glutamine amidotransferase class-I CJM129_RS07080 PF03102 NeuB family CJM129_RS07080 PF08666 SAF domain CJM129_RS07090 PF16363 GDP-mannose 4,6 dehydratase CJM129_RS07095 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJM129_RS07125 PF08666 SAF domain CJM129_RS07125 PF03102 NeuB family CJM129_RS07130 PF02350 UDP-N-acetylglucosamine 2-epimerase CJM129_RS07135 PF00483 Nucleotidyl transferase CJM129_RS07145 PF02348 Cytidylyltransferase CJM129_RS07175 PF00700 Bacterial flagellin C-terminal helical region CJM129_RS07175 PF07196 Flagellin hook IN motif CJM129_RS07175 PF00669 Bacterial flagellin N-terminal helical region CJM129_RS07180 PF00700 Bacterial flagellin C-terminal helical region CJM129_RS07180 PF00669 Bacterial flagellin N-terminal helical region CJM129_RS07180 PF07196 Flagellin hook IN motif CJM129_RS07200 PF07963 Prokaryotic N-terminal methylation motif CJM129_RS07200 PF08334 Type II secretion system (T2SS), protein G CJM129_RS07205 PF00814 Glycoprotease family CJM129_RS07220 PF13288 DXP reductoisomerase C-terminal domain CJM129_RS07220 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJM129_RS07220 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CJM129_RS07235 PF05670 NFACT protein RNA binding domain CJM129_RS07240 PF12804 MobA-like NTP transferase domain CJM129_RS07245 PF02253 Phospholipase A1 CJM129_RS07250 PF01032 FecCD transport family CJM129_RS07255 PF01032 FecCD transport family CJM129_RS07260 PF00005 ABC transporter CJM129_RS07265 PF01497 Periplasmic binding protein CJM129_RS07280 PF02335 Cytochrome c552 CJM129_RS07285 PF03264 NapC/NirT cytochrome c family, N-terminal region CJM129_RS07290 PF17941 Polyphosphate kinase C-terminal domain 1 CJM129_RS07290 PF02503 Polyphosphate kinase middle domain CJM129_RS07290 PF13089 Polyphosphate kinase N-terminal domain CJM129_RS07290 PF13090 Polyphosphate kinase C-terminal domain 2 CJM129_RS07320 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJM129_RS07320 PF17864 RuvB AAA lid domain CJM129_RS07320 PF05491 RuvB C-terminal winged helix domain CJM129_RS07325 PF01594 AI-2E family transporter CJM129_RS07330 PF10415 Fumarase C C-terminus CJM129_RS07330 PF00206 Lyase CJM129_RS07335 PF12951 Passenger-associated-transport-repeat CJM129_RS07335 PF00082 Subtilase family CJM129_RS07335 PF03797 Autotransporter beta-domain CJM129_RS07340 PF01380 SIS domain CJM129_RS07350 PF04055 Radical SAM superfamily CJM129_RS07355 PF00860 Permease family CJM129_RS07360 PF00156 Phosphoribosyl transferase domain CJM129_RS07365 PF04333 MlaA lipoprotein CJM129_RS07380 PF01725 Ham1 family CJM129_RS07385 PF07690 Major Facilitator Superfamily CJM129_RS07395 PF03841 L-seryl-tRNA selenium transferase CJM129_RS07400 PF03144 Elongation factor Tu domain 2 CJM129_RS07400 PF00009 Elongation factor Tu GTP binding domain CJM129_RS07400 PF09107 Elongation factor SelB, winged helix CJM129_RS07400 PF09106 Elongation factor SelB, winged helix CJM129_RS07405 PF13098 Thioredoxin-like domain CJM129_RS07415 PF00258 Flavodoxin CJM129_RS07430 PF06628 Catalase-related immune-responsive CJM129_RS07430 PF00199 Catalase CJM129_RS07440 PF13309 HTH domain CJM129_RS07440 PF08348 YheO-like PAS domain CJM129_RS07445 PF01042 Endoribonuclease L-PSP CJM129_RS07460 PF00206 Lyase CJM129_RS07460 PF10397 Adenylosuccinate lyase C-terminus CJM129_RS07470 PF04023 FeoA domain CJM129_RS07475 PF07664 Ferrous iron transport protein B C terminus CJM129_RS07475 PF02421 Ferrous iron transport protein B CJM129_RS07475 PF07670 Nucleoside recognition CJM129_RS07480 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJM129_RS07480 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJM129_RS07480 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJM129_RS07490 PF00121 Triosephosphate isomerase CJM129_RS07495 PF00162 Phosphoglycerate kinase CJM129_RS07500 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJM129_RS07500 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJM129_RS07505 PF01467 Cytidylyltransferase-like CJM129_RS07520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJM129_RS07520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJM129_RS07520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJM129_RS07520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJM129_RS07525 PF03748 Flagellar basal body-associated protein FliL CJM129_RS07530 PF01648 4'-phosphopantetheinyl transferase superfamily CJM129_RS07540 PF00067 Cytochrome P450 CJM129_RS07550 PF05159 Capsule polysaccharide biosynthesis protein CJM129_RS07555 PF05159 Capsule polysaccharide biosynthesis protein CJM129_RS07565 PF00483 Nucleotidyl transferase CJM129_RS07570 PF00117 Glutamine amidotransferase class-I CJM129_RS07575 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CJM129_RS07575 PF00391 PEP-utilising enzyme, mobile domain CJM129_RS07580 PF01209 ubiE/COQ5 methyltransferase family CJM129_RS07600 PF00483 Nucleotidyl transferase CJM129_RS07605 PF13580 SIS domain CJM129_RS07615 PF00288 GHMP kinases N terminal domain CJM129_RS07615 PF08544 GHMP kinases C terminal CJM129_RS07620 PF01370 NAD dependent epimerase/dehydratase family CJM129_RS07625 PF16363 GDP-mannose 4,6 dehydratase CJM129_RS07630 PF01370 NAD dependent epimerase/dehydratase family CJM129_RS07635 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CJM129_RS07680 PF13193 AMP-binding enzyme C-terminal domain CJM129_RS07680 PF00501 AMP-binding enzyme CJM129_RS07685 PF01501 Glycosyl transferase family 8 CJM129_RS07685 PF08437 Glycosyl transferase family 8 C-terminal CJM129_RS07690 PF00535 Glycosyl transferase family 2 CJM129_RS07690 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CJM129_RS07700 PF01380 SIS domain CJM129_RS07700 PF00571 CBS domain CJM129_RS07705 PF10531 SLBB domain CJM129_RS07705 PF02563 Polysaccharide biosynthesis/export protein CJM129_RS07715 PF00005 ABC transporter CJM129_RS07720 PF01061 ABC-2 type transporter CJM129_RS07745 PF01171 PP-loop family CJM129_RS07750 PF04055 Radical SAM superfamily CJM129_RS07750 PF00919 Uncharacterized protein family UPF0004 CJM129_RS07755 PF00472 RF-1 domain CJM129_RS07755 PF03462 PCRF domain CJM129_RS07765 PF01142 tRNA pseudouridine synthase D (TruD) CJM129_RS07770 PF00586 AIR synthase related protein, N-terminal domain CJM129_RS07770 PF02769 AIR synthase related protein, C-terminal domain CJM129_RS07790 PF02119 Flagellar P-ring protein CJM129_RS07810 PF07196 Flagellin hook IN motif CJM129_RS07810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJM129_RS07820 PF01925 Sulfite exporter TauE/SafE CJM129_RS07825 PF00482 Type II secretion system (T2SS), protein F CJM129_RS07830 PF00437 Type II/IV secretion system protein CJM129_RS07845 PF07655 Secretin N-terminal domain CJM129_RS07845 PF00263 Bacterial type II and III secretion system protein CJM129_RS07855 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CJM129_RS07855 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CJM129_RS07855 PF10371 Domain of unknown function CJM129_RS07855 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CJM129_RS07855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJM129_RS07860 PF13419 Haloacid dehalogenase-like hydrolase CJM129_RS07865 PF05736 OprF membrane domain CJM129_RS07865 PF00691 OmpA family CJM129_RS07870 PF00380 Ribosomal protein S9/S16 CJM129_RS07875 PF00572 Ribosomal protein L13 CJM129_RS07880 PF13361 UvrD-like helicase C-terminal domain CJM129_RS07880 PF00580 UvrD/REP helicase N-terminal domain CJM129_RS07885 PF12705 PD-(D/E)XK nuclease superfamily CJM129_RS07910 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CJM129_RS07910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJM129_RS07925 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJM129_RS07930 PF00072 Response regulator receiver domain CJM129_RS07930 PF00486 Transcriptional regulatory protein, C terminal CJM129_RS07935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJM129_RS07935 PF08447 PAS fold CJM129_RS07935 PF08448 PAS fold CJM129_RS07945 PF00117 Glutamine amidotransferase class-I CJM129_RS07945 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJM129_RS07965 PF00709 Adenylosuccinate synthetase CJM129_RS07975 PF04143 Sulphur transport CJM129_RS07980 PF01206 Sulfurtransferase TusA CJM129_RS07985 PF00474 Sodium:solute symporter family CJM129_RS07990 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CJM129_RS07990 PF00171 Aldehyde dehydrogenase family CJM129_RS07990 PF01619 Proline dehydrogenase CJM129_RS07990 PF14850 DNA-binding domain of Proline dehydrogenase CJM129_RS07995 PF02769 AIR synthase related protein, C-terminal domain CJM129_RS07995 PF00586 AIR synthase related protein, N-terminal domain CJM129_RS08005 PF13426 PAS domain CJM129_RS08005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJM129_RS08005 PF08447 PAS fold CJM129_RS08015 PF02634 FdhD/NarQ family CJM129_RS08025 PF13247 4Fe-4S dicluster domain CJM129_RS08030 PF01568 Molydopterin dinucleotide binding domain CJM129_RS08030 PF00384 Molybdopterin oxidoreductase CJM129_RS08030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJM129_RS08035 PF00037 4Fe-4S binding domain CJM129_RS08035 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJM129_RS08035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJM129_RS08035 PF00384 Molybdopterin oxidoreductase CJM129_RS08035 PF01568 Molydopterin dinucleotide binding domain CJM129_RS08050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJM129_RS08055 PF07732 Multicopper oxidase CJM129_RS08055 PF07731 Multicopper oxidase CJM129_RS08065 PF02391 MoaE protein CJM129_RS08070 PF03453 MoeA N-terminal region (domain I and II) CJM129_RS08070 PF00994 Probable molybdopterin binding domain CJM129_RS08070 PF03454 MoeA C-terminal region (domain IV) CJM129_RS08075 PF09827 CRISPR associated protein Cas2 CJM129_RS08080 PF01867 CRISPR associated protein Cas1 CJM129_RS08120 PF02769 AIR synthase related protein, C-terminal domain CJM129_RS08120 PF00586 AIR synthase related protein, N-terminal domain CJM129_RS08125 PF01121 Dephospho-CoA kinase CJM129_RS08130 PF01678 Diaminopimelate epimerase CJM129_RS08135 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJM129_RS08145 PF00210 Ferritin-like domain CJM129_RS08150 PF00342 Phosphoglucose isomerase CJM129_RS08155 PF00483 Nucleotidyl transferase CJM129_RS08160 PF13193 AMP-binding enzyme C-terminal domain CJM129_RS08160 PF00501 AMP-binding enzyme CJM129_RS08160 PF16177 Acetyl-coenzyme A synthetase N-terminus CJM129_RS08165 PF00005 ABC transporter CJM129_RS08170 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS08175 PF12849 PBP superfamily domain CJM129_RS08180 PF03746 LamB/YcsF family CJM129_RS08185 PF02682 Carboxyltransferase domain, subdomain C and D CJM129_RS08190 PF02626 Carboxyltransferase domain, subdomain A and B CJM129_RS08200 PF02525 Flavodoxin-like fold CJM129_RS08205 PF01638 HxlR-like helix-turn-helix CJM129_RS08215 PF08240 Alcohol dehydrogenase GroES-like domain CJM129_RS08215 PF00107 Zinc-binding dehydrogenase CJM129_RS08220 PF08463 EcoEI R protein C-terminal CJM129_RS08220 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CJM129_RS08220 PF04851 Type III restriction enzyme, res subunit CJM129_RS08220 PF00271 Helicase conserved C-terminal domain CJM129_RS08230 PF01420 Type I restriction modification DNA specificity domain CJM129_RS08235 PF02661 Fic/DOC family CJM129_RS08235 PF13784 Fic/DOC family N-terminal CJM129_RS08240 PF12161 HsdM N-terminal domain CJM129_RS08240 PF02384 N-6 DNA Methylase CJM129_RS08245 PF13460 NAD(P)H-binding CJM129_RS08250 PF01638 HxlR-like helix-turn-helix CJM129_RS08260 PF01022 Bacterial regulatory protein, arsR family CJM129_RS08270 PF01758 Sodium Bile acid symporter family CJM129_RS08280 PF00672 HAMP domain CJM129_RS08280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJM129_RS08280 PF17200 Single Cache domain 2 CJM129_RS08290 PF00361 Proton-conducting membrane transporter CJM129_RS08295 PF00361 Proton-conducting membrane transporter CJM129_RS08300 PF00361 Proton-conducting membrane transporter CJM129_RS08300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CJM129_RS08305 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CJM129_RS08310 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CJM129_RS08315 PF12838 4Fe-4S dicluster domain CJM129_RS08320 PF00146 NADH dehydrogenase CJM129_RS08325 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJM129_RS08325 PF01568 Molydopterin dinucleotide binding domain CJM129_RS08325 PF12838 4Fe-4S dicluster domain CJM129_RS08325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJM129_RS08325 PF00384 Molybdopterin oxidoreductase CJM129_RS08340 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CJM129_RS08345 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CJM129_RS08350 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJM129_RS08355 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CJM129_RS08360 PF00005 ABC transporter CJM129_RS08365 PF00005 ABC transporter CJM129_RS08365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJM129_RS08370 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS08370 PF12911 N-terminal TM domain of oligopeptide transport permease C CJM129_RS08375 PF00528 Binding-protein-dependent transport system inner membrane component CJM129_RS08380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJM129_RS08385 PF02913 FAD linked oxidases, C-terminal domain CJM129_RS08385 PF01565 FAD binding domain CJM129_RS08390 PF00970 Oxidoreductase FAD-binding domain CJM129_RS08390 PF00175 Oxidoreductase NAD-binding domain CJM129_RS08390 PF00042 Globin CJM129_RS08395 PF00005 ABC transporter CJM129_RS08400 PF07690 Major Facilitator Superfamily CJM129_RS08405 PF00753 Metallo-beta-lactamase superfamily CJM129_RS08410 PF01176 Translation initiation factor 1A / IF-1 CJM129_RS08415 PF00444 Ribosomal protein L36 CJM129_RS08420 PF00416 Ribosomal protein S13/S18 CJM129_RS08425 PF00411 Ribosomal protein S11 CJM129_RS08430 PF01479 S4 domain CJM129_RS08430 PF00163 Ribosomal protein S4/S9 N-terminal domain CJM129_RS08435 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CJM129_RS08435 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CJM129_RS08435 PF01000 RNA polymerase Rpb3/RpoA insert domain CJM129_RS08440 PF01196 Ribosomal protein L17 CJM129_RS08445 PF01634 ATP phosphoribosyltransferase CJM129_RS08445 PF08029 HisG, C-terminal domain CJM129_RS08450 PF00815 Histidinol dehydrogenase CJM129_RS08455 PF00475 Imidazoleglycerol-phosphate dehydratase CJM129_RS08455 PF08645 Polynucleotide kinase 3 phosphatase CJM129_RS08460 PF00117 Glutamine amidotransferase class-I CJM129_RS08465 PF00977 Histidine biosynthesis protein CJM129_RS08475 PF00977 Histidine biosynthesis protein CJM129_RS08480 PF01502 Phosphoribosyl-AMP cyclohydrolase CJM129_RS08480 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CJM129_RS08485 PF14602 Hexapeptide repeat of succinyl-transferase CJM129_RS08485 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CJM129_RS08490 PF10609 NUBPL iron-transfer P-loop NTPase CJM129_RS08490 PF01883 Iron-sulfur cluster assembly protein CJM129_RS08495 PF02542 YgbB family CJM129_RS08495 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJM129_RS08505 PF01747 ATP-sulfurylase CJM129_RS08505 PF14306 PUA-like domain CJM129_RS08510 PF04608 Phosphatidylglycerophosphatase A CJM129_RS08515 PF01649 Ribosomal protein S20 CJM129_RS08520 PF00472 RF-1 domain CJM129_RS08520 PF03462 PCRF domain CJM129_RS08525 PF01243 Pyridoxamine 5'-phosphate oxidase CJM129_RS08525 PF10615 Protein of unknown function (DUF2470) CJM129_RS08530 PF00593 TonB dependent receptor CJM129_RS08530 PF07715 TonB-dependent Receptor Plug Domain CJM129_RS08535 PF01032 FecCD transport family CJM129_RS08540 PF00005 ABC transporter CJM129_RS08545 PF01497 Periplasmic binding protein CJM129_RS08560 PF14815 NUDIX domain CJM129_RS08560 PF00730 HhH-GPD superfamily base excision DNA repair protein CJM129_RS08590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJM129_RS08590 PF01872 RibD C-terminal domain CJM129_RS08600 PF03313 Serine dehydratase alpha chain CJM129_RS08600 PF03315 Serine dehydratase beta chain CJM129_RS08620 PF01618 MotA/TolQ/ExbB proton channel family CJM129_RS08625 PF02472 Biopolymer transport protein ExbD/TolR CJM129_RS08650 PF01264 Chorismate synthase CJM129_RS08655 PF14622 Ribonuclease-III-like CJM129_RS08655 PF00035 Double-stranded RNA binding motif CJM129_RS08660 PF00075 RNase H CJM129_RS08670 PF01807 CHC2 zinc finger CJM129_RS08670 PF08275 DNA primase catalytic core, N-terminal domain CJM129_RS08685 PF02875 Mur ligase family, glutamate ligase domain CJM129_RS08685 PF08245 Mur ligase middle domain CJM129_RS08690 PF02575 YbaB/EbfC DNA-binding family CJM129_RS08700 PF00348 Polyprenyl synthetase CJM129_RS08705 PF02779 Transketolase, pyrimidine binding domain CJM129_RS08705 PF02780 Transketolase, C-terminal domain CJM129_RS08705 PF00456 Transketolase, thiamine diphosphate binding domain CJM129_RS08710 PF02405 Permease MlaE CJM129_RS08715 PF00005 ABC transporter CJM129_RS08725 PF03886 ABC-type transport auxiliary lipoprotein component CJM129_RS08725 PF02470 MlaD protein CJM129_RS08735 PF00557 Metallopeptidase family M24 CJM129_RS08740 PF01177 Asp/Glu/Hydantoin racemase CJM129_RS08745 PF00877 NlpC/P60 family CJM129_RS08750 PF06965 Na+/H+ antiporter 1 CJM129_RS08755 PF06965 Na+/H+ antiporter 1 CJM129_RS08770 PF03239 Iron permease FTR1 family CJM129_RS08775 PF10634 Fe2+ transport protein CJM129_RS08795 PF00005 ABC transporter CJM129_RS08895 PF00589 Phage integrase family CJM129_RS08925 PF14743 DNA ligase OB-like domain CJM129_RS08925 PF01068 ATP dependent DNA ligase domain CJM129_RS08940 PF03952 Enolase, N-terminal domain CJM129_RS08940 PF00113 Enolase, C-terminal TIM barrel domain CJM129_RS08945 PF00154 recA bacterial DNA recombination protein CJM129_RS08950 PF02621 Menaquinone biosynthesis CJM129_RS08955 PF01313 Bacterial export proteins, family 3 CJM129_RS08960 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CJM129_RS08970 PF00459 Inositol monophosphatase family CJM129_RS08975 PF00285 Citrate synthase, C-terminal domain CJM129_RS08985 PF04055 Radical SAM superfamily CJM129_RS08985 PF06968 Biotin and Thiamin Synthesis associated domain CJM129_RS08990 PF01131 DNA topoisomerase CJM129_RS08990 PF01396 Topoisomerase DNA binding C4 zinc finger CJM129_RS08990 PF01751 Toprim domain CJM129_RS09000 PF00344 SecY translocase CJM129_RS09005 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CJM129_RS09010 PF03719 Ribosomal protein S5, C-terminal domain CJM129_RS09010 PF00333 Ribosomal protein S5, N-terminal domain CJM129_RS09015 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CJM129_RS09020 PF00347 Ribosomal protein L6 CJM129_RS09025 PF00410 Ribosomal protein S8 CJM129_RS09030 PF00253 Ribosomal protein S14p/S29e CJM129_RS09035 PF00281 Ribosomal protein L5 CJM129_RS09035 PF00673 ribosomal L5P family C-terminus CJM129_RS09040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CJM129_RS09040 PF00467 KOW motif CJM129_RS09045 PF00238 Ribosomal protein L14p/L23e CJM129_RS09050 PF00366 Ribosomal protein S17 CJM129_RS09055 PF00831 Ribosomal L29 protein CJM129_RS09060 PF00252 Ribosomal protein L16p/L10e CJM129_RS09065 PF00189 Ribosomal protein S3, C-terminal domain CJM129_RS09065 PF07650 KH domain CJM129_RS09070 PF00237 Ribosomal protein L22p/L17e CJM129_RS09075 PF00203 Ribosomal protein S19 CJM129_RS09080 PF00181 Ribosomal Proteins L2, RNA binding domain CJM129_RS09080 PF03947 Ribosomal Proteins L2, C-terminal domain CJM129_RS09085 PF00276 Ribosomal protein L23 CJM129_RS09090 PF00573 Ribosomal protein L4/L1 family CJM129_RS09095 PF00297 Ribosomal protein L3 CJM129_RS09100 PF00338 Ribosomal protein S10p/S20e CJM129_RS09105 PF01479 S4 domain CJM129_RS09105 PF00849 RNA pseudouridylate synthase CJM129_RS09110 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJM129_RS09110 PF00753 Metallo-beta-lactamase superfamily CJM129_RS09110 PF17770 Ribonuclease J C-terminal domain CJM129_RS09115 PF00398 Ribosomal RNA adenine dimethylase CJM129_RS09125 PF04055 Radical SAM superfamily CJM129_RS09160 PF00694 Aconitase C-terminal domain CJM129_RS09165 PF00330 Aconitase family (aconitate hydratase) CJM129_RS09170 PF00180 Isocitrate/isopropylmalate dehydrogenase CJM129_RS09175 PF08502 LeuA allosteric (dimerisation) domain CJM129_RS09175 PF00682 HMGL-like CJM129_RS09190 PF14489 QueF-like protein CJM129_RS09200 PF04204 Homoserine O-succinyltransferase CJM129_RS09205 PF01053 Cys/Met metabolism PLP-dependent enzyme CJM129_RS09215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJM129_RS09215 PF00460 Flagella basal body rod protein CJM129_RS09215 PF07196 Flagellin hook IN motif CJM129_RS09215 PF07559 Flagellar basal body protein FlaE CJM129_RS09220 PF02075 Crossover junction endodeoxyribonuclease RuvC CJM129_RS09300 PF01645 Conserved region in glutamate synthase CJM129_RS09300 PF00310 Glutamine amidotransferases class-II CJM129_RS09300 PF04898 Glutamate synthase central domain CJM129_RS09300 PF01493 GXGXG motif CJM129_RS09360 PF03150 Di-haem cytochrome c peroxidase CJM129_RS09360 PF00034 Cytochrome c CJM129_RS09365 PF01557 Fumarylacetoacetate (FAA) hydrolase family