locus-tag	class	description
CJM129_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CJM129_RS00010	COG0592	DNA-directed DNA polymerase activity
CJM129_RS00015	COG0187	DNA topoisomerase II activity
CJM129_RS00030	COG2056	Na+-H+ antiporter family
CJM129_RS00035	COG0070	glutamate synthase
CJM129_RS00035	COG0067	glutamate synthase
CJM129_RS00035	COG0069	glutamate synthase activity
CJM129_RS00040	COG0493	'glutamate synthase
CJM129_RS00045	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CJM129_RS00055	COG1592	Rubrerythrin
CJM129_RS00060	COG0129	dihydroxy-acid dehydratase activity
CJM129_RS00075	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CJM129_RS00090	COG0840	transmembrane signaling receptor activity
CJM129_RS00095	COG1858	cytochrome C peroxidase
CJM129_RS00100	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJM129_RS00105	COG0564	pseudouridine synthase activity
CJM129_RS00110	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CJM129_RS00115	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CJM129_RS00130	COG0504	CTP synthase activity
CJM129_RS00140	COG0252	asparaginase activity
CJM129_RS00170	COG0405	Gamma-glutamyltransferase
CJM129_RS00195	COG2814	Major facilitator Superfamily
CJM129_RS00215	COG1217	gtp-binding protein TYPA
CJM129_RS00230	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CJM129_RS00260	COG0471	metal ion transport
CJM129_RS00270	COG0471	metal ion transport
CJM129_RS00310	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJM129_RS00310	COG1776	CheC inhibitor of MCP methylation
CJM129_RS00315	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJM129_RS00320	COG1191	sigma factor activity
CJM129_RS00330	COG0455	bacterial-type flagellum organization
CJM129_RS00335	COG1419	protein localization to endoplasmic reticulum
CJM129_RS00340	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CJM129_RS00345	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CJM129_RS00350	COG0402	S-adenosylhomocysteine deaminase activity
CJM129_RS00355	COG0616	signal peptide processing
CJM129_RS00385	COG1139	Iron-sulfur cluster binding protein
CJM129_RS00390	COG0247	lactate metabolic process
CJM129_RS00405	COG3021	interspecies interaction between organisms
CJM129_RS00420	COG1271	oxidase subunit
CJM129_RS00425	COG1294	oxidase, subunit
CJM129_RS00435	COG1794	racemase activity, acting on amino acids and derivatives
CJM129_RS00445	COG1027	Aspartate ammonia-lyase
CJM129_RS00450	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CJM129_RS00480	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CJM129_RS00485	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CJM129_RS00505	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CJM129_RS00505	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CJM129_RS00510	COG1192	Involved in chromosome partitioning
CJM129_RS00515	COG1475	DNA binding
CJM129_RS00530	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CJM129_RS00545	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CJM129_RS00550	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CJM129_RS00555	COG0811	peptide transport
CJM129_RS00560	COG0848	biopolymer transport protein
CJM129_RS00575	COG2885	chlorophyll binding
CJM129_RS00585	COG1047	Peptidyl-prolyl cis-trans
CJM129_RS00590	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CJM129_RS00595	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CJM129_RS00600	COG0037	tRNA processing
CJM129_RS00625	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CJM129_RS00635	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CJM129_RS00640	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CJM129_RS00645	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CJM129_RS00655	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJM129_RS00680	COG0083	homoserine kinase activity
CJM129_RS00705	COG1401	restriction endodeoxyribonuclease activity
CJM129_RS00715	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CJM129_RS00720	COG1121	(ABC) transporter
CJM129_RS00730	COG0840	transmembrane signaling receptor activity
CJM129_RS00740	COG0492	ferredoxin-NADP+ reductase activity
CJM129_RS00745	COG3118	belongs to the thioredoxin family
CJM129_RS00750	COG0792	nuclease activity
CJM129_RS00755	COG0460	homoserine dehydrogenase
CJM129_RS00760	COG0436	Aminotransferase
CJM129_RS00775	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJM129_RS00780	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CJM129_RS00785	COG0254	rRNA binding
CJM129_RS00790	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CJM129_RS00810	COG0602	queuosine metabolic process
CJM129_RS00815	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CJM129_RS00855	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CJM129_RS00885	COG1840	ABC-type Fe3 transport system, periplasmic component
CJM129_RS00900	COG4206	TonB-dependent receptor
CJM129_RS00900	COG1629	transport
CJM129_RS00905	COG0811	peptide transport
CJM129_RS00910	COG0848	biopolymer transport protein
CJM129_RS00920	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CJM129_RS00925	COG1253	flavin adenine dinucleotide binding
CJM129_RS00935	COG2824	Alkylphosphonate utilization operon protein PhnA
CJM129_RS00940	COG0861	Integral membrane protein TerC family
CJM129_RS00945	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CJM129_RS00950	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CJM129_RS00950	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CJM129_RS00960	COG0606	chelatase, subunit chli
CJM129_RS00965	COG0242	peptide deformylase activity
CJM129_RS00975	COG0544	peptidyl-prolyl cis-trans isomerase activity
CJM129_RS00985	COG1157	protein secretion by the type III secretion system
CJM129_RS00990	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CJM129_RS00995	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CJM129_RS01000	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CJM129_RS01000	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CJM129_RS01030	COG1297	OPT oligopeptide transporter protein
CJM129_RS01035	COG1968	undecaprenyl-diphosphatase activity
CJM129_RS01040	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CJM129_RS01045	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CJM129_RS01100	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CJM129_RS01105	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CJM129_RS01120	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CJM129_RS01140	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CJM129_RS01145	COG0670	Belongs to the BI1 family
CJM129_RS01150	COG0288	reversible hydration of carbon dioxide
CJM129_RS01155	COG0668	transmembrane transport
CJM129_RS01180	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CJM129_RS01185	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CJM129_RS01210	COG0477	Major facilitator Superfamily
CJM129_RS01220	COG0315	cyclic pyranopterin monophosphate synthase activity
CJM129_RS01225	COG2921	Belongs to the UPF0250 family
CJM129_RS01235	COG0708	Exodeoxyribonuclease III
CJM129_RS01240	COG2194	sulfuric ester hydrolase activity
CJM129_RS01245	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CJM129_RS01255	COG0418	dihydroorotase activity
CJM129_RS01265	COG2226	methyltransferase
CJM129_RS01285	COG0330	HflC and HflK could
CJM129_RS01295	COG1942	4-Oxalocrotonate Tautomerase
CJM129_RS01300	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CJM129_RS01305	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CJM129_RS01320	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CJM129_RS01325	COG1077	Cell shape determining protein MreB Mrl
CJM129_RS01355	COG0835	chemotaxis
CJM129_RS01360	COG0643	Histidine kinase
CJM129_RS01360	COG0784	Response regulator, receiver
CJM129_RS01360	COG2198	Histidine kinase
CJM129_RS01365	COG0835	chemotaxis
CJM129_RS01365	COG0784	Response regulator, receiver
CJM129_RS01405	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CJM129_RS01420	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CJM129_RS01455	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJM129_RS01460	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CJM129_RS01465	COG2076	Multidrug Resistance protein
CJM129_RS01480	COG0193	aminoacyl-tRNA hydrolase activity
CJM129_RS01490	COG0019	diaminopimelate decarboxylase activity
CJM129_RS01505	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJM129_RS01515	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJM129_RS01525	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CJM129_RS01540	COG2226	methyltransferase
CJM129_RS01545	COG1570	exodeoxyribonuclease VII activity
CJM129_RS01550	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CJM129_RS01555	COG0251	oxidation-reduction process
CJM129_RS01570	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CJM129_RS01590	COG0450	alkyl hydroperoxide reductase
CJM129_RS01595	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJM129_RS01600	COG1360	Flagellar Motor Protein
CJM129_RS01605	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CJM129_RS01625	COG1238	metal cluster binding
CJM129_RS01630	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CJM129_RS01635	COG0730	response to heat
CJM129_RS01650	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJM129_RS01650	COG0512	Glutamine amidotransferase of anthranilate synthase
CJM129_RS01660	COG0133	tryptophan synthase activity
CJM129_RS01675	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJM129_RS01675	COG1776	CheC inhibitor of MCP methylation
CJM129_RS01690	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJM129_RS01695	COG0745	RESPONSE REGULATOR receiver
CJM129_RS01715	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CJM129_RS01720	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CJM129_RS01725	COG1981	membrane
CJM129_RS01730	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJM129_RS01740	COG1538	Outer membrane efflux protein
CJM129_RS01750	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJM129_RS01765	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CJM129_RS01775	COG0754	glutathionylspermidine amidase activity
CJM129_RS01780	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJM129_RS01800	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJM129_RS01810	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CJM129_RS01820	COG0284	orotidine-5'-phosphate decarboxylase activity
CJM129_RS01830	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CJM129_RS01860	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CJM129_RS01880	COG0579	oxidoreductase
CJM129_RS01920	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CJM129_RS01940	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CJM129_RS01960	COG1053	succinate dehydrogenase
CJM129_RS01965	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJM129_RS02010	COG2353	YceI-like domain
CJM129_RS02040	COG0488	(ABC) transporter
CJM129_RS02055	COG1739	Uncharacterized protein family UPF0029
CJM129_RS02095	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CJM129_RS02115	COG1028	Short-chain dehydrogenase reductase Sdr
CJM129_RS02125	COG1053	succinate dehydrogenase
CJM129_RS02130	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJM129_RS02135	COG2048	Heterodisulfide reductase, subunit B
CJM129_RS02145	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJM129_RS02150	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJM129_RS02180	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CJM129_RS02185	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CJM129_RS02195	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CJM129_RS02215	COG2121	Domain of unknown function (DUF374)
CJM129_RS02230	COG0195	Participates in both transcription termination and antitermination
CJM129_RS02240	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CJM129_RS02245	COG0612	Peptidase, M16
CJM129_RS02250	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CJM129_RS02255	COG2346	COG2346, Truncated hemoglobins
CJM129_RS02270	COG0765	amino acid transport
CJM129_RS02300	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CJM129_RS02305	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CJM129_RS02320	COG0250	Participates in transcription elongation, termination and antitermination
CJM129_RS02325	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CJM129_RS02330	COG0081	regulation of translation
CJM129_RS02340	COG0222	ribosome binding
CJM129_RS02355	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CJM129_RS02360	COG0049	tRNA binding
CJM129_RS02405	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
CJM129_RS02410	COG0004	ammonium transporteR
CJM129_RS02420	COG0673	inositol 2-dehydrogenase activity
CJM129_RS02435	COG0424	maF-like protein
CJM129_RS02445	COG0542	response to heat
CJM129_RS02450	COG1937	Protein conserved in bacteria
CJM129_RS02455	COG0793	Belongs to the peptidase S41A family
CJM129_RS02460	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CJM129_RS02465	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CJM129_RS02470	COG0047	phosphoribosylformylglycinamidine synthase activity
CJM129_RS02480	COG0204	Acyl-transferase
CJM129_RS02495	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CJM129_RS02515	COG1677	Flagellar hook-basal body complex protein FliE
CJM129_RS02520	COG1558	bacterial-type flagellum-dependent cell motility
CJM129_RS02525	COG1815	bacterial-type flagellum-dependent cell motility
CJM129_RS02545	COG0039	L-malate dehydrogenase activity
CJM129_RS02555	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CJM129_RS02565	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CJM129_RS02565	COG0674	pyruvate-flavodoxin oxidoreductase activity
CJM129_RS02570	COG1013	pyruvate-flavodoxin oxidoreductase activity
CJM129_RS02590	COG0142	geranyltranstransferase activity
CJM129_RS02595	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CJM129_RS02610	COG0181	hydroxymethylbilane synthase activity
CJM129_RS02615	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CJM129_RS02625	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CJM129_RS02645	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CJM129_RS02675	COG1289	transmembrane transporter activity
CJM129_RS02680	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CJM129_RS02685	COG0492	ferredoxin-NADP+ reductase activity
CJM129_RS02700	COG0305	Participates in initiation and elongation during chromosome replication
CJM129_RS02765	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJM129_RS02765	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJM129_RS02770	COG1610	YqeY-like protein
CJM129_RS02775	COG0028	Belongs to the TPP enzyme family
CJM129_RS02780	COG0440	acetolactate synthase activity
CJM129_RS02795	COG0805	protein transport
CJM129_RS02805	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJM129_RS02810	COG0494	nUDIX hydrolase
CJM129_RS02815	COG0527	aspartate kinase activity
CJM129_RS02830	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CJM129_RS02835	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CJM129_RS02850	COG0196	riboflavin kinase activity
CJM129_RS02855	COG2890	protein-(glutamine-N5) methyltransferase activity
CJM129_RS02870	COG2860	membrane
CJM129_RS02880	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CJM129_RS02885	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJM129_RS02890	COG0191	fructose-bisphosphate aldolase activity
CJM129_RS02910	COG0733	neurotransmitter:sodium symporter activity
CJM129_RS02915	COG2258	MOSC domain
CJM129_RS02930	COG1473	amidohydrolase
CJM129_RS02935	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJM129_RS02940	COG0577	efflux transmembrane transporter activity
CJM129_RS02940	COG1136	(ABC) transporter
CJM129_RS02945	COG1538	Outer membrane efflux protein
CJM129_RS02960	COG1696	Membrane protein involved in D-alanine export
CJM129_RS02965	COG1528	Iron-storage protein
CJM129_RS02970	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CJM129_RS02975	COG0573	inorganic phosphate transmembrane transporter activity
CJM129_RS02980	COG0581	inorganic phosphate transmembrane transporter activity
CJM129_RS02995	COG0534	Mate efflux family protein
CJM129_RS03010	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CJM129_RS03020	COG0298	carbon dioxide binding
CJM129_RS03025	COG0409	Hydrogenase expression formation protein
CJM129_RS03030	COG0309	Hydrogenase expression formation protein (HypE)
CJM129_RS03035	COG0375	protein maturation
CJM129_RS03050	COG0557	exoribonuclease II activity
CJM129_RS03055	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CJM129_RS03065	COG0758	DNA mediated transformation
CJM129_RS03080	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJM129_RS03085	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CJM129_RS03090	COG0563	adenylate kinase activity
CJM129_RS03105	COG0497	DNA recombination
CJM129_RS03115	COG0084	hydrolase, TatD family'
CJM129_RS03120	COG1388	LysM domain
CJM129_RS03120	COG0791	NLP P60 protein
CJM129_RS03125	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CJM129_RS03200	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CJM129_RS03225	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CJM129_RS03230	COG0802	atpase or kinase
CJM129_RS03235	COG1137	ATPase activity
CJM129_RS03240	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CJM129_RS03245	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CJM129_RS03265	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CJM129_RS03280	COG0556	nucleotide-excision repair
CJM129_RS03300	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CJM129_RS03310	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CJM129_RS03320	COG0280	phosphate acetyltransferase
CJM129_RS03355	COG0849	cell division
CJM129_RS03360	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CJM129_RS03365	COG4786	Flagellar basal body rod
CJM129_RS03370	COG4786	Flagellar basal body rod
CJM129_RS03375	COG0174	glutamine synthetase
CJM129_RS03385	COG0826	peptidase U32
CJM129_RS03390	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CJM129_RS03400	COG0752	glycyl-tRNA synthetase alpha subunit
CJM129_RS03405	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CJM129_RS03415	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CJM129_RS03415	COG1519	Transferase
CJM129_RS03420	COG0564	pseudouridine synthase activity
CJM129_RS03425	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CJM129_RS03430	COG0228	four-way junction DNA binding
CJM129_RS03435	COG1837	Belongs to the UPF0109 family
CJM129_RS03440	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CJM129_RS03445	COG0336	Belongs to the RNA methyltransferase TrmD family
CJM129_RS03460	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CJM129_RS03465	COG1393	Belongs to the ArsC family
CJM129_RS03470	COG0587	DNA-directed DNA polymerase activity
CJM129_RS03475	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CJM129_RS03490	COG2890	protein-(glutamine-N5) methyltransferase activity
CJM129_RS03495	COG0501	Belongs to the peptidase M48B family
CJM129_RS03505	COG0521	Mo-molybdopterin cofactor biosynthetic process
CJM129_RS03510	COG0598	Magnesium transport protein CorA
CJM129_RS03540	COG3842	ATPase activity
CJM129_RS03630	COG0675	Transposase, IS605 OrfB family
CJM129_RS03640	COG4771	TonB-dependent receptor
CJM129_RS03645	COG1420	regulation of RNA biosynthetic process
CJM129_RS03665	COG0732	type I restriction modification DNA specificity domain
CJM129_RS03690	COG0436	Aminotransferase
CJM129_RS03695	COG1045	serine acetyltransferase
CJM129_RS03700	COG1166	arginine decarboxylase activity
CJM129_RS03715	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CJM129_RS03720	COG0163	prenyltransferase activity
CJM129_RS03730	COG1464	Belongs to the NlpA lipoprotein family
CJM129_RS03735	COG1464	Belongs to the NlpA lipoprotein family
CJM129_RS03740	COG1464	Belongs to the NlpA lipoprotein family
CJM129_RS03745	COG2011	ABC-type metal ion transport system permease component
CJM129_RS03750	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CJM129_RS03765	COG0210	DNA helicase
CJM129_RS03775	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CJM129_RS03785	COG0437	4 iron, 4 sulfur cluster binding
CJM129_RS03790	COG0348	domain, Protein
CJM129_RS03795	COG3043	anaerobic respiration
CJM129_RS03830	COG0788	formyltetrahydrofolate deformylase activity
CJM129_RS03835	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CJM129_RS03845	COG0642	Histidine kinase
CJM129_RS03855	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CJM129_RS03870	COG1181	Belongs to the D-alanine--D-alanine ligase family
CJM129_RS03875	COG0632	four-way junction helicase activity
CJM129_RS03885	COG0728	peptidoglycan biosynthetic process
CJM129_RS03890	COG0215	cysteine-tRNA ligase activity
CJM129_RS03900	COG0167	dihydroorotate dehydrogenase activity
CJM129_RS03905	COG0612	Peptidase, M16
CJM129_RS03910	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJM129_RS03915	COG1028	Short-chain dehydrogenase reductase Sdr
CJM129_RS03930	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CJM129_RS03940	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CJM129_RS03945	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CJM129_RS03960	COG1338	Plays a role in the flagellum-specific transport system
CJM129_RS03965	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CJM129_RS04000	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CJM129_RS04020	COG1757	Na H antiporter
CJM129_RS04025	COG4221	oxidoreductase activity
CJM129_RS04035	COG1049	propionate catabolic process, 2-methylcitrate cycle
CJM129_RS04040	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CJM129_RS04050	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJM129_RS04050	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJM129_RS04060	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CJM129_RS04090	COG1408	metallophosphoesterase
CJM129_RS04095	COG0688	phosphatidylethanolamine metabolic process
CJM129_RS04135	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CJM129_RS04140	COG0681	Belongs to the peptidase S26 family
CJM129_RS04145	COG0303	'Molybdopterin
CJM129_RS04160	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJM129_RS04160	COG0512	Glutamine amidotransferase of anthranilate synthase
CJM129_RS04165	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CJM129_RS04170	COG0582	viral genome integration into host DNA
CJM129_RS04175	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CJM129_RS04210	COG3258	Cytochrome c
CJM129_RS04240	COG2404	hydrolase activity, acting on ester bonds
CJM129_RS04245	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJM129_RS04250	COG1959	2 iron, 2 sulfur cluster binding
CJM129_RS04255	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CJM129_RS04260	COG1674	ftsk spoiiie
CJM129_RS04260	COG1196	nuclear chromosome segregation
CJM129_RS04265	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CJM129_RS04280	COG0488	(ABC) transporter
CJM129_RS04285	COG5002	protein histidine kinase activity
CJM129_RS04290	COG0745	RESPONSE REGULATOR receiver
CJM129_RS04295	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJM129_RS04305	COG0539	negative regulation of cytoplasmic translation
CJM129_RS04305	COG1185	polyribonucleotide nucleotidyltransferase activity
CJM129_RS04310	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CJM129_RS04315	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CJM129_RS04320	COG0072	phenylalanine-tRNA ligase activity
CJM129_RS04320	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJM129_RS04325	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CJM129_RS04330	COG0537	adenosine 5'-monophosphoramidase activity
CJM129_RS04345	COG0765	amino acid transport
CJM129_RS04355	COG1115	amino acid carrier protein
CJM129_RS04360	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CJM129_RS04365	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CJM129_RS04390	COG1999	signal sequence binding
CJM129_RS04395	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CJM129_RS04400	COG0776	regulation of translation
CJM129_RS04420	COG1966	Carbon starvation protein
CJM129_RS04425	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CJM129_RS04430	COG0765	amino acid transport
CJM129_RS04435	COG0765	amino acid transport
CJM129_RS04440	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJM129_RS04445	COG1126	abc transporter atp-binding protein
CJM129_RS04450	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CJM129_RS04455	COG2201	protein-glutamate methylesterase activity
CJM129_RS04480	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CJM129_RS04485	COG0012	GTP binding
CJM129_RS04495	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
CJM129_RS04500	COG0511	ligase activity, forming carbon-carbon bonds
CJM129_RS04500	COG5016	pyruvate
CJM129_RS04505	COG0733	neurotransmitter:sodium symporter activity
CJM129_RS04510	COG0733	neurotransmitter:sodium symporter activity
CJM129_RS04560	COG0765	amino acid transport
CJM129_RS04570	COG0653	protein targeting
CJM129_RS04575	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CJM129_RS04585	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CJM129_RS04600	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CJM129_RS04615	COG0840	transmembrane signaling receptor activity
CJM129_RS04625	COG0138	bifunctional purine biosynthesis protein purh
CJM129_RS04630	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CJM129_RS04640	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CJM129_RS04650	COG0706	membrane insertase activity
CJM129_RS04665	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CJM129_RS04685	COG0824	Thioesterase
CJM129_RS04765	COG2195	Cleaves the N-terminal amino acid of tripeptides
CJM129_RS04770	COG0477	Major facilitator Superfamily
CJM129_RS04775	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJM129_RS04785	COG3022	response to hydroperoxide
CJM129_RS04790	COG1473	amidohydrolase
CJM129_RS04795	COG2807	transmembrane transport
CJM129_RS04815	COG0247	lactate metabolic process
CJM129_RS04815	COG2181	nitrate reductase activity
CJM129_RS04820	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJM129_RS04830	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CJM129_RS04835	COG0113	porphobilinogen synthase activity
CJM129_RS04840	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJM129_RS04845	COG0357	Ribosomal RNA small subunit methyltransferase G
CJM129_RS04855	COG2855	membrane
CJM129_RS04860	COG0583	DNA-binding transcription factor activity
CJM129_RS04865	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CJM129_RS04885	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJM129_RS04890	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJM129_RS04910	COG0343	queuine tRNA-ribosyltransferase activity
CJM129_RS04930	COG0582	viral genome integration into host DNA
CJM129_RS05120	COG3501	Rhs element vgr protein
CJM129_RS05245	COG3501	Rhs element vgr protein
CJM129_RS05330	COG1333	cytochrome c biogenesis protein
CJM129_RS05330	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJM129_RS05380	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CJM129_RS05385	COG2204	response regulator
CJM129_RS05400	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CJM129_RS05415	COG0481	GTPase activity
CJM129_RS05440	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CJM129_RS05450	COG0439	Biotin carboxylase
CJM129_RS05455	COG0772	Belongs to the SEDS family
CJM129_RS05460	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CJM129_RS05480	COG0352	thiamine-phosphate diphosphorylase activity
CJM129_RS05485	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJM129_RS05490	COG2022	thiamine diphosphate biosynthetic process
CJM129_RS05505	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJM129_RS05555	COG0517	IMP dehydrogenase activity
CJM129_RS05555	COG0516	GMP reductase activity
CJM129_RS05575	COG1546	Belongs to the CinA family
CJM129_RS05575	COG1058	Belongs to the CinA family
CJM129_RS05585	COG0778	Nitroreductase
CJM129_RS05590	COG0778	Nitroreductase
CJM129_RS05595	COG0778	Nitroreductase
CJM129_RS05605	COG0750	zinc metalloprotease
CJM129_RS05610	COG2990	Protein conserved in bacteria
CJM129_RS05620	COG0629	single-stranded DNA binding
CJM129_RS05625	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CJM129_RS05630	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CJM129_RS05640	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
CJM129_RS05645	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CJM129_RS05690	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CJM129_RS05700	COG0739	heme binding
CJM129_RS05705	COG0285	dihydrofolate synthase activity
CJM129_RS05725	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJM129_RS05730	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJM129_RS05735	COG1862	Preprotein translocase
CJM129_RS05740	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CJM129_RS05745	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CJM129_RS05750	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
CJM129_RS05770	COG0210	DNA helicase
CJM129_RS05805	COG0542	response to heat
CJM129_RS05810	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CJM129_RS05820	COG2095	MarC family integral membrane protein
CJM129_RS05830	COG2833	Protein of unknown function (DUF455)
CJM129_RS05835	COG1183	phosphatidylcholine synthase activity
CJM129_RS05845	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJM129_RS05855	COG0745	RESPONSE REGULATOR receiver
CJM129_RS05865	COG1086	Polysaccharide biosynthesis protein
CJM129_RS05870	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJM129_RS05875	COG0110	maltose O-acetyltransferase activity
CJM129_RS05880	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CJM129_RS05885	COG0438	transferase activity, transferring glycosyl groups
CJM129_RS05895	COG0438	transferase activity, transferring glycosyl groups
CJM129_RS05900	COG1215	transferase activity, transferring glycosyl groups
CJM129_RS05905	COG0438	transferase activity, transferring glycosyl groups
CJM129_RS05910	COG1132	(ABC) transporter
CJM129_RS05915	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CJM129_RS05925	COG0859	PFAM glycosyl transferase family 9
CJM129_RS05930	COG1560	Kdo2-lipid A biosynthetic process
CJM129_RS05940	COG1216	Glycosyl transferase, family 2
CJM129_RS05940	COG1442	glycosyl transferase family 8
CJM129_RS05950	COG1442	glycosyl transferase family 8
CJM129_RS05950	COG1216	Glycosyl transferase, family 2
CJM129_RS05960	COG2089	acid synthase
CJM129_RS05980	COG0110	maltose O-acetyltransferase activity
CJM129_RS05985	COG1216	Glycosyl transferase, family 2
CJM129_RS05995	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CJM129_RS06010	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CJM129_RS06025	COG2217	Heavy metal translocating P-type atpase
CJM129_RS06030	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CJM129_RS06035	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CJM129_RS06055	COG2217	Heavy metal translocating P-type atpase
CJM129_RS06075	COG3610	response to peptide
CJM129_RS06085	COG0039	L-malate dehydrogenase activity
CJM129_RS06090	COG0586	Pfam SNARE associated Golgi protein
CJM129_RS06105	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CJM129_RS06110	COG0217	transcriptional regulatory protein
CJM129_RS06130	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CJM129_RS06135	COG0194	GDP metabolic process
CJM129_RS06145	COG1684	flagellar biosynthetic protein fliR
CJM129_RS06155	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CJM129_RS06160	COG0052	Belongs to the universal ribosomal protein uS2 family
CJM129_RS06165	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJM129_RS06175	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CJM129_RS06180	COG0723	plastoquinol--plastocyanin reductase activity
CJM129_RS06185	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CJM129_RS06190	COG0445	tRNA wobble uridine modification
CJM129_RS06210	COG1301	dicarboxylic acid transport
CJM129_RS06225	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CJM129_RS06260	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CJM129_RS06270	COG0356	it plays a direct role in the translocation of protons across the membrane
CJM129_RS06275	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CJM129_RS06280	COG0552	protein localization to endoplasmic reticulum
CJM129_RS06295	COG1418	mRNA catabolic process
CJM129_RS06310	COG1295	ribonuclease BN
CJM129_RS06315	COG0277	FAD linked oxidase domain protein
CJM129_RS06325	COG0739	heme binding
CJM129_RS06335	COG1496	oxidoreductase activity
CJM129_RS06350	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CJM129_RS06355	COG0459	protein refolding
CJM129_RS06360	COG0642	Histidine kinase
CJM129_RS06365	COG0745	RESPONSE REGULATOR receiver
CJM129_RS06385	COG0642	Histidine kinase
CJM129_RS06390	COG0745	RESPONSE REGULATOR receiver
CJM129_RS06395	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJM129_RS06400	COG0484	heat shock protein binding
CJM129_RS06405	COG0789	Transcriptional regulator
CJM129_RS06410	COG0475	glutathione-regulated potassium exporter activity
CJM129_RS06410	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJM129_RS06420	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CJM129_RS06425	COG0751	glycine-tRNA ligase activity
CJM129_RS06430	COG0739	heme binding
CJM129_RS06440	COG0248	Ppx GppA phosphatase
CJM129_RS06460	COG2814	Major facilitator Superfamily
CJM129_RS06475	COG0731	radical SAM domain protein
CJM129_RS06495	COG0519	Catalyzes the synthesis of GMP from XMP
CJM129_RS06495	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CJM129_RS06520	COG1185	polyribonucleotide nucleotidyltransferase activity
CJM129_RS06540	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CJM129_RS06545	COG4773	Receptor
CJM129_RS06550	COG0484	heat shock protein binding
CJM129_RS06555	COG0745	RESPONSE REGULATOR receiver
CJM129_RS06560	COG0642	Histidine kinase
CJM129_RS06565	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CJM129_RS06570	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CJM129_RS06575	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CJM129_RS06580	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CJM129_RS06585	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CJM129_RS06610	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CJM129_RS06615	COG1758	RNA polymerase activity
CJM129_RS06620	COG0528	UMP kinase activity
CJM129_RS06635	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CJM129_RS06640	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CJM129_RS06650	COG0564	pseudouridine synthase activity
CJM129_RS06655	COG0772	Belongs to the SEDS family
CJM129_RS06665	COG0582	viral genome integration into host DNA
CJM129_RS06680	COG0863	Belongs to the N(4) N(6)-methyltransferase family
CJM129_RS06925	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CJM129_RS06930	COG0569	domain protein
CJM129_RS06935	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
CJM129_RS06945	COG0281	malic enzyme
CJM129_RS06945	COG0280	phosphate acetyltransferase
CJM129_RS06960	COG0439	Biotin carboxylase
CJM129_RS06965	COG0511	ligase activity, forming carbon-carbon bonds
CJM129_RS06975	COG1086	Polysaccharide biosynthesis protein
CJM129_RS06980	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJM129_RS07015	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CJM129_RS07050	COG1083	cytidylyl-transferase
CJM129_RS07055	COG3980	spore coat polysaccharide biosynthesis protein
CJM129_RS07060	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CJM129_RS07065	COG0107	imidazoleglycerol-phosphate synthase activity
CJM129_RS07080	COG2089	acid synthase
CJM129_RS07090	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJM129_RS07095	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJM129_RS07125	COG2089	acid synthase
CJM129_RS07130	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CJM129_RS07135	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CJM129_RS07145	COG1083	cytidylyl-transferase
CJM129_RS07150	COG1028	Short-chain dehydrogenase reductase Sdr
CJM129_RS07175	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CJM129_RS07180	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CJM129_RS07200	COG2165	general secretion pathway protein
CJM129_RS07205	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CJM129_RS07225	COG0575	Belongs to the CDS family
CJM129_RS07235	COG1293	RNA-binding protein homologous to eukaryotic snRNP
CJM129_RS07245	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
CJM129_RS07250	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJM129_RS07255	COG4605	iron ion homeostasis
CJM129_RS07260	COG4604	ABC transporter, ATP-binding protein
CJM129_RS07265	COG4607	ABC-type enterochelin transport system periplasmic component
CJM129_RS07280	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
CJM129_RS07285	COG3005	denitrification pathway
CJM129_RS07325	COG0628	permease
CJM129_RS07330	COG0114	fumarate hydratase activity
CJM129_RS07340	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CJM129_RS07350	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CJM129_RS07355	COG2252	PERMEase
CJM129_RS07365	COG2853	Lipoprotein
CJM129_RS07385	COG2814	Major facilitator Superfamily
CJM129_RS07400	COG3276	selenocysteine insertion sequence binding
CJM129_RS07430	COG0753	catalase activity
CJM129_RS07440	COG2964	Protein conserved in bacteria
CJM129_RS07445	COG0251	oxidation-reduction process
CJM129_RS07470	COG1918	ferrous iron import across plasma membrane
CJM129_RS07475	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CJM129_RS07480	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CJM129_RS07485	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CJM129_RS07500	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CJM129_RS07525	COG1580	Controls the rotational direction of flagella during chemotaxis
CJM129_RS07540	COG2124	cytochrome p450
CJM129_RS07560	COG0529	Catalyzes the synthesis of activated sulfate
CJM129_RS07565	COG1213	nucleotidyl transferase
CJM129_RS07570	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CJM129_RS07575	COG0574	Belongs to the PEP-utilizing enzyme family
CJM129_RS07575	COG3848	Pyruvate phosphate dikinase
CJM129_RS07580	COG2226	methyltransferase
CJM129_RS07605	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CJM129_RS07630	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJM129_RS07675	COG1028	Short-chain dehydrogenase reductase Sdr
CJM129_RS07680	COG0318	PFAM AMP-dependent synthetase and ligase
CJM129_RS07690	COG1215	transferase activity, transferring glycosyl groups
CJM129_RS07690	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CJM129_RS07700	COG0517	IMP dehydrogenase activity
CJM129_RS07700	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CJM129_RS07745	COG0037	tRNA processing
CJM129_RS07750	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJM129_RS07755	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CJM129_RS07770	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CJM129_RS07790	COG1706	bacterial-type flagellum-dependent cell motility
CJM129_RS07795	COG3951	Flagellar rod assembly protein muramidase FlgJ
CJM129_RS07820	COG0730	response to heat
CJM129_RS07825	COG1459	type II secretion system
CJM129_RS07830	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CJM129_RS07860	COG0546	phosphoglycolate phosphatase activity
CJM129_RS07870	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CJM129_RS07875	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CJM129_RS07880	COG0210	DNA helicase
CJM129_RS07885	COG2887	Belongs to the helicase family. UvrD subfamily
CJM129_RS07930	COG0745	RESPONSE REGULATOR receiver
CJM129_RS07945	COG0505	Belongs to the CarA family
CJM129_RS07965	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CJM129_RS07980	COG0425	Belongs to the sulfur carrier protein TusA family
CJM129_RS07985	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CJM129_RS07995	COG0709	Synthesizes selenophosphate from selenide and ATP
CJM129_RS08015	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CJM129_RS08025	COG0437	4 iron, 4 sulfur cluster binding
CJM129_RS08035	COG3383	formate dehydrogenase (NAD+) activity
CJM129_RS08065	COG0314	molybdopterin synthase activity
CJM129_RS08070	COG0303	'Molybdopterin
CJM129_RS08075	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CJM129_RS08120	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CJM129_RS08135	COG2992	FlgJ-related protein
CJM129_RS08145	COG0783	Belongs to the Dps family
CJM129_RS08150	COG0166	Belongs to the GPI family
CJM129_RS08160	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJM129_RS08165	COG3839	Belongs to the ABC transporter superfamily
CJM129_RS08170	COG4662	Binding-protein-dependent transport system inner membrane component
CJM129_RS08175	COG2998	abc-type tungstate transport system, permease component
CJM129_RS08180	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CJM129_RS08185	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CJM129_RS08190	COG1984	allophanate hydrolase subunit 2
CJM129_RS08200	COG2249	NAD(P)H dehydrogenase (quinone) activity
CJM129_RS08205	COG1733	regulation of RNA biosynthetic process
CJM129_RS08215	COG1064	alcohol dehydrogenase
CJM129_RS08230	COG0732	type I restriction modification DNA specificity domain
CJM129_RS08235	COG3177	Filamentation induced by cAMP protein fic
CJM129_RS08245	COG2910	NAD(P)H-binding
CJM129_RS08250	COG1733	regulation of RNA biosynthetic process
CJM129_RS08260	COG0640	Transcriptional regulator
CJM129_RS08270	COG0798	PFAM Bile acid sodium symporter
CJM129_RS08295	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJM129_RS08300	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CJM129_RS08310	COG0839	Belongs to the complex I subunit 6 family
CJM129_RS08345	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJM129_RS08355	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJM129_RS08370	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJM129_RS08375	COG0601	transmembrane transport
CJM129_RS08385	COG0277	FAD linked oxidase domain protein
CJM129_RS08395	COG4615	Cyclic peptide transporter
CJM129_RS08405	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJM129_RS08410	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CJM129_RS08415	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CJM129_RS08425	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CJM129_RS08435	COG0202	RNA polymerase activity
CJM129_RS08440	COG0203	ribosomal protein L17
CJM129_RS08455	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CJM129_RS08455	COG0131	Imidazoleglycerol-phosphate dehydratase
CJM129_RS08480	COG0140	phosphoribosyl-ATP diphosphatase activity
CJM129_RS08480	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CJM129_RS08485	COG2171	N-acyltransferase activity
CJM129_RS08490	COG0489	protein tyrosine kinase activity
CJM129_RS08495	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CJM129_RS08495	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CJM129_RS08505	COG2046	Belongs to the sulfate adenylyltransferase family
CJM129_RS08510	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CJM129_RS08515	COG0268	Binds directly to 16S ribosomal RNA
CJM129_RS08525	COG0748	coenzyme F420 binding
CJM129_RS08530	COG4771	TonB-dependent receptor
CJM129_RS08535	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJM129_RS08540	COG1120	ATPase activity
CJM129_RS08545	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CJM129_RS08560	COG1194	a g-specific adenine glycosylase
CJM129_RS08590	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJM129_RS08590	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJM129_RS08600	COG1760	l-serine dehydratase
CJM129_RS08605	COG0814	amino acid
CJM129_RS08620	COG0811	peptide transport
CJM129_RS08625	COG0848	biopolymer transport protein
CJM129_RS08650	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CJM129_RS08655	COG0571	ribonuclease III activity
CJM129_RS08660	COG0328	RNA-DNA hybrid ribonuclease activity
CJM129_RS08670	COG0358	DNA primase activity
CJM129_RS08685	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CJM129_RS08690	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CJM129_RS08705	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CJM129_RS08710	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CJM129_RS08715	COG1127	ABC transporter
CJM129_RS08725	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CJM129_RS08725	COG3218	ABC-type transport auxiliary lipoprotein component
CJM129_RS08735	COG0024	Methionine aminopeptidase
CJM129_RS08740	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CJM129_RS08745	COG0791	NLP P60 protein
CJM129_RS08755	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CJM129_RS08770	COG0672	)-iron permease
CJM129_RS08795	COG1136	(ABC) transporter
CJM129_RS08925	COG1793	dna ligase
CJM129_RS08940	COG0148	phosphopyruvate hydratase activity
CJM129_RS08945	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CJM129_RS08950	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
CJM129_RS08955	COG1987	bacterial-type flagellum assembly
CJM129_RS08960	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CJM129_RS08970	COG1218	3'(2'),5'-bisphosphate nucleotidase
CJM129_RS08975	COG0372	Belongs to the citrate synthase family
CJM129_RS08985	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJM129_RS08990	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CJM129_RS09000	COG0201	protein transport
CJM129_RS09005	COG0200	Binds to the 23S rRNA
CJM129_RS09010	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CJM129_RS09015	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CJM129_RS09020	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CJM129_RS09025	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CJM129_RS09030	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CJM129_RS09035	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CJM129_RS09040	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CJM129_RS09045	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CJM129_RS09050	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CJM129_RS09055	COG0255	Belongs to the universal ribosomal protein uL29 family
CJM129_RS09060	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CJM129_RS09065	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CJM129_RS09075	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CJM129_RS09085	COG0089	rRNA binding
CJM129_RS09095	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CJM129_RS09100	COG0051	transcription antitermination factor activity, RNA binding
CJM129_RS09105	COG1187	pseudouridine synthase activity
CJM129_RS09110	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CJM129_RS09165	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CJM129_RS09175	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CJM129_RS09190	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CJM129_RS09200	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
CJM129_RS09215	COG1749	Flagellar hook protein flgE
CJM129_RS09300	COG0070	glutamate synthase
CJM129_RS09300	COG0069	glutamate synthase activity
CJM129_RS09300	COG0067	glutamate synthase
CJM129_RS09360	COG1858	cytochrome C peroxidase
CJM129_RS09365	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJM129_RS09465	COG0405	Gamma-glutamyltransferase