CJM129_RS00060	PWY-5101	L-isoleucine biosynthesis II
CJM129_RS00060	PWY-5103	L-isoleucine biosynthesis III
CJM129_RS00060	PWY-5104	L-isoleucine biosynthesis IV
CJM129_RS00060	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJM129_RS00075	PWY-6703	preQ<sub>0</sub> biosynthesis
CJM129_RS00110	PWY-6123	inosine-5'-phosphate biosynthesis I
CJM129_RS00110	PWY-6124	inosine-5'-phosphate biosynthesis II
CJM129_RS00110	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS00110	PWY-7234	inosine-5'-phosphate biosynthesis III
CJM129_RS00115	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJM129_RS00115	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJM129_RS00115	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJM129_RS00115	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJM129_RS00115	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJM129_RS00115	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJM129_RS00115	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJM129_RS00115	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJM129_RS00125	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJM129_RS00125	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJM129_RS00125	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJM129_RS00125	PWY-6936	seleno-amino acid biosynthesis
CJM129_RS00125	PWY-702	L-methionine biosynthesis II
CJM129_RS00130	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CJM129_RS00130	PWY-7177	UTP and CTP dephosphorylation II
CJM129_RS00130	PWY-7185	UTP and CTP dephosphorylation I
CJM129_RS00170	PWY-4041	&gamma;-glutamyl cycle
CJM129_RS00170	PWY-5826	hypoglycin biosynthesis
CJM129_RS00340	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJM129_RS00340	PWY-6148	tetrahydromethanopterin biosynthesis
CJM129_RS00340	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJM129_RS00340	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJM129_RS00345	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJM129_RS00345	PWY-6416	quinate degradation II
CJM129_RS00345	PWY-6707	gallate biosynthesis
CJM129_RS00435	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJM129_RS00435	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJM129_RS00445	PWY-5392	reductive TCA cycle II
CJM129_RS00445	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJM129_RS00445	PWY-5690	TCA cycle II (plants and fungi)
CJM129_RS00445	PWY-5913	TCA cycle VI (obligate autotrophs)
CJM129_RS00445	PWY-6728	methylaspartate cycle
CJM129_RS00445	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJM129_RS00445	PWY-7254	TCA cycle VII (acetate-producers)
CJM129_RS00445	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJM129_RS00495	PWY-3341	L-proline biosynthesis III
CJM129_RS00495	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJM129_RS00535	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS00545	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS00590	PWY-4381	fatty acid biosynthesis initiation I
CJM129_RS00590	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CJM129_RS00590	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJM129_RS00595	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJM129_RS00595	PWY-6153	autoinducer AI-2 biosynthesis I
CJM129_RS00595	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CJM129_RS00640	PWY-6825	phosphatidylcholine biosynthesis V
CJM129_RS00645	PWY-4381	fatty acid biosynthesis initiation I
CJM129_RS00645	PWY-5743	3-hydroxypropanoate cycle
CJM129_RS00645	PWY-5744	glyoxylate assimilation
CJM129_RS00645	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJM129_RS00645	PWY-6679	jadomycin biosynthesis
CJM129_RS00645	PWY-6722	candicidin biosynthesis
CJM129_RS00645	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJM129_RS00660	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CJM129_RS00670	PWY-2201	folate transformations I
CJM129_RS00670	PWY-5497	purine nucleobases degradation II (anaerobic)
CJM129_RS00680	PWY-702	L-methionine biosynthesis II
CJM129_RS00780	PWY-2201	folate transformations I
CJM129_RS00790	PWY-2201	folate transformations I
CJM129_RS00810	PWY-6703	preQ<sub>0</sub> biosynthesis
CJM129_RS00815	PWY-6823	molybdenum cofactor biosynthesis
CJM129_RS00835	PWY-2781	<i>cis</i>-zeatin biosynthesis
CJM129_RS00855	PWY-6854	ethylene biosynthesis III (microbes)
CJM129_RS00945	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJM129_RS00945	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJM129_RS00950	PWY-6938	NADH repair
CJM129_RS00980	PWY-5663	tetrahydrobiopterin biosynthesis I
CJM129_RS00980	PWY-5664	tetrahydrobiopterin biosynthesis II
CJM129_RS00980	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJM129_RS00980	PWY-6703	preQ<sub>0</sub> biosynthesis
CJM129_RS00980	PWY-6983	tetrahydrobiopterin biosynthesis III
CJM129_RS00980	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CJM129_RS00985	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS00990	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJM129_RS00990	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJM129_RS00990	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJM129_RS00990	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJM129_RS00995	PWY-2941	L-lysine biosynthesis II
CJM129_RS00995	PWY-2942	L-lysine biosynthesis III
CJM129_RS00995	PWY-5097	L-lysine biosynthesis VI
CJM129_RS01035	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CJM129_RS01085	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJM129_RS01085	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJM129_RS01095	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJM129_RS01095	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJM129_RS01115	PWY-5381	pyridine nucleotide cycling (plants)
CJM129_RS01120	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJM129_RS01120	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJM129_RS01120	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJM129_RS01120	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJM129_RS01120	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJM129_RS01120	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJM129_RS01120	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJM129_RS01120	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJM129_RS01130	PWY-5686	UMP biosynthesis
CJM129_RS01150	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJM129_RS01150	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJM129_RS01150	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJM129_RS01150	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJM129_RS01165	PWY-6823	molybdenum cofactor biosynthesis
CJM129_RS01165	PWY-6891	thiazole biosynthesis II (Bacillus)
CJM129_RS01165	PWY-6892	thiazole biosynthesis I (E. coli)
CJM129_RS01165	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJM129_RS01245	PWY-7039	phosphatidate metabolism, as a signaling molecule
CJM129_RS01255	PWY-5686	UMP biosynthesis
CJM129_RS01290	PWY-5057	L-valine degradation II
CJM129_RS01290	PWY-5076	L-leucine degradation III
CJM129_RS01290	PWY-5078	L-isoleucine degradation II
CJM129_RS01290	PWY-5101	L-isoleucine biosynthesis II
CJM129_RS01290	PWY-5103	L-isoleucine biosynthesis III
CJM129_RS01290	PWY-5104	L-isoleucine biosynthesis IV
CJM129_RS01290	PWY-5108	L-isoleucine biosynthesis V
CJM129_RS01310	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJM129_RS01310	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJM129_RS01310	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJM129_RS01310	PWY-5994	palmitate biosynthesis I (animals and fungi)
CJM129_RS01310	PWY-6113	superpathway of mycolate biosynthesis
CJM129_RS01310	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJM129_RS01310	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJM129_RS01310	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJM129_RS01310	PWY-7663	gondoate biosynthesis (anaerobic)
CJM129_RS01310	PWY-7664	oleate biosynthesis IV (anaerobic)
CJM129_RS01310	PWYG-321	mycolate biosynthesis
CJM129_RS01345	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJM129_RS01345	PWY-5723	Rubisco shunt
CJM129_RS01380	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CJM129_RS01380	PWY-622	starch biosynthesis
CJM129_RS01395	PWY-5381	pyridine nucleotide cycling (plants)
CJM129_RS01395	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJM129_RS01395	PWY-6596	adenosine nucleotides degradation I
CJM129_RS01395	PWY-6606	guanosine nucleotides degradation II
CJM129_RS01395	PWY-6607	guanosine nucleotides degradation I
CJM129_RS01395	PWY-6608	guanosine nucleotides degradation III
CJM129_RS01395	PWY-7185	UTP and CTP dephosphorylation I
CJM129_RS01405	PWY-5155	&beta;-alanine biosynthesis III
CJM129_RS01415	PWY-6654	phosphopantothenate biosynthesis III
CJM129_RS01440	PWY-2201	folate transformations I
CJM129_RS01440	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJM129_RS01460	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJM129_RS01480	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CJM129_RS01490	PWY-2941	L-lysine biosynthesis II
CJM129_RS01490	PWY-2942	L-lysine biosynthesis III
CJM129_RS01490	PWY-5097	L-lysine biosynthesis VI
CJM129_RS01500	PWY-3461	L-tyrosine biosynthesis II
CJM129_RS01500	PWY-3462	L-phenylalanine biosynthesis II
CJM129_RS01500	PWY-6120	L-tyrosine biosynthesis III
CJM129_RS01500	PWY-6627	salinosporamide A biosynthesis
CJM129_RS01500	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CJM129_RS01500	PWY-7626	bacilysin biosynthesis
CJM129_RS01525	PWY-6891	thiazole biosynthesis II (Bacillus)
CJM129_RS01525	PWY-6892	thiazole biosynthesis I (E. coli)
CJM129_RS01525	PWY-7560	methylerythritol phosphate pathway II
CJM129_RS01540	PWY-5839	menaquinol-7 biosynthesis
CJM129_RS01540	PWY-5844	menaquinol-9 biosynthesis
CJM129_RS01540	PWY-5849	menaquinol-6 biosynthesis
CJM129_RS01540	PWY-5890	menaquinol-10 biosynthesis
CJM129_RS01540	PWY-5891	menaquinol-11 biosynthesis
CJM129_RS01540	PWY-5892	menaquinol-12 biosynthesis
CJM129_RS01540	PWY-5895	menaquinol-13 biosynthesis
CJM129_RS01560	PWY-4381	fatty acid biosynthesis initiation I
CJM129_RS01580	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJM129_RS01580	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CJM129_RS01580	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJM129_RS01580	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJM129_RS01580	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CJM129_RS01580	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJM129_RS01580	PWY-7205	CMP phosphorylation
CJM129_RS01580	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJM129_RS01580	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJM129_RS01580	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS01580	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJM129_RS01580	PWY-7224	purine deoxyribonucleosides salvage
CJM129_RS01580	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJM129_RS01580	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJM129_RS01645	PWY-5958	acridone alkaloid biosynthesis
CJM129_RS01645	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJM129_RS01645	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJM129_RS01650	PWY-5958	acridone alkaloid biosynthesis
CJM129_RS01650	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJM129_RS01650	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJM129_RS01715	PWY-6749	CMP-legionaminate biosynthesis I
CJM129_RS01820	PWY-5686	UMP biosynthesis
CJM129_RS01830	PWY-6167	flavin biosynthesis II (archaea)
CJM129_RS01830	PWY-6168	flavin biosynthesis III (fungi)
CJM129_RS01835	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJM129_RS01835	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CJM129_RS01850	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJM129_RS01860	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CJM129_RS01875	PWY-1042	glycolysis IV (plant cytosol)
CJM129_RS01875	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJM129_RS01875	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJM129_RS01875	PWY-5723	Rubisco shunt
CJM129_RS01875	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJM129_RS01875	PWY-6886	1-butanol autotrophic biosynthesis
CJM129_RS01875	PWY-6901	superpathway of glucose and xylose degradation
CJM129_RS01875	PWY-7003	glycerol degradation to butanol
CJM129_RS01875	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJM129_RS01875	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJM129_RS01880	PWY-7254	TCA cycle VII (acetate-producers)
CJM129_RS01885	PWY-3961	phosphopantothenate biosynthesis II
CJM129_RS01925	PWY-1622	formaldehyde assimilation I (serine pathway)
CJM129_RS01925	PWY-181	photorespiration
CJM129_RS01925	PWY-2161	folate polyglutamylation
CJM129_RS01925	PWY-2201	folate transformations I
CJM129_RS01925	PWY-3661	glycine betaine degradation I
CJM129_RS01925	PWY-3661-1	glycine betaine degradation II (mammalian)
CJM129_RS01925	PWY-3841	folate transformations II
CJM129_RS01925	PWY-5497	purine nucleobases degradation II (anaerobic)
CJM129_RS01940	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJM129_RS01960	PWY-3781	aerobic respiration I (cytochrome c)
CJM129_RS01960	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJM129_RS01960	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJM129_RS01960	PWY-5690	TCA cycle II (plants and fungi)
CJM129_RS01960	PWY-6728	methylaspartate cycle
CJM129_RS01960	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJM129_RS01960	PWY-7254	TCA cycle VII (acetate-producers)
CJM129_RS01960	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJM129_RS01965	PWY-3781	aerobic respiration I (cytochrome c)
CJM129_RS01965	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJM129_RS01965	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJM129_RS01965	PWY-5690	TCA cycle II (plants and fungi)
CJM129_RS01965	PWY-6728	methylaspartate cycle
CJM129_RS01965	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJM129_RS01965	PWY-7254	TCA cycle VII (acetate-producers)
CJM129_RS01965	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJM129_RS01985	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
CJM129_RS02095	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJM129_RS02095	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJM129_RS02100	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJM129_RS02100	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJM129_RS02100	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJM129_RS02105	PWY-1042	glycolysis IV (plant cytosol)
CJM129_RS02105	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJM129_RS02105	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJM129_RS02105	PWY-5723	Rubisco shunt
CJM129_RS02105	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJM129_RS02105	PWY-6886	1-butanol autotrophic biosynthesis
CJM129_RS02105	PWY-6901	superpathway of glucose and xylose degradation
CJM129_RS02105	PWY-7003	glycerol degradation to butanol
CJM129_RS02105	PWY-7124	ethylene biosynthesis V (engineered)
CJM129_RS02105	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJM129_RS02115	PWY-5367	petroselinate biosynthesis
CJM129_RS02115	PWY-5515	L-arabinose degradation II
CJM129_RS02115	PWY-5525	D-glucuronate degradation I
CJM129_RS02115	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJM129_RS02115	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJM129_RS02115	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJM129_RS02115	PWY-5994	palmitate biosynthesis I (animals and fungi)
CJM129_RS02115	PWY-6113	superpathway of mycolate biosynthesis
CJM129_RS02115	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJM129_RS02115	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJM129_RS02115	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJM129_RS02115	PWY-7663	gondoate biosynthesis (anaerobic)
CJM129_RS02115	PWY-7664	oleate biosynthesis IV (anaerobic)
CJM129_RS02115	PWYG-321	mycolate biosynthesis
CJM129_RS02120	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CJM129_RS02120	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJM129_RS02125	PWY-3781	aerobic respiration I (cytochrome c)
CJM129_RS02125	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJM129_RS02125	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJM129_RS02125	PWY-5690	TCA cycle II (plants and fungi)
CJM129_RS02125	PWY-6728	methylaspartate cycle
CJM129_RS02125	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJM129_RS02125	PWY-7254	TCA cycle VII (acetate-producers)
CJM129_RS02125	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJM129_RS02130	PWY-3781	aerobic respiration I (cytochrome c)
CJM129_RS02130	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJM129_RS02130	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJM129_RS02130	PWY-5690	TCA cycle II (plants and fungi)
CJM129_RS02130	PWY-6728	methylaspartate cycle
CJM129_RS02130	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJM129_RS02130	PWY-7254	TCA cycle VII (acetate-producers)
CJM129_RS02130	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJM129_RS02155	PWY-4381	fatty acid biosynthesis initiation I
CJM129_RS02155	PWY-5743	3-hydroxypropanoate cycle
CJM129_RS02155	PWY-5744	glyoxylate assimilation
CJM129_RS02155	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJM129_RS02155	PWY-6679	jadomycin biosynthesis
CJM129_RS02155	PWY-6722	candicidin biosynthesis
CJM129_RS02155	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJM129_RS02185	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJM129_RS02185	PWY-5723	Rubisco shunt
CJM129_RS02195	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CJM129_RS02240	PWY-5198	factor 420 biosynthesis
CJM129_RS02240	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
CJM129_RS02240	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
CJM129_RS02460	PWY-6123	inosine-5'-phosphate biosynthesis I
CJM129_RS02460	PWY-6124	inosine-5'-phosphate biosynthesis II
CJM129_RS02460	PWY-7234	inosine-5'-phosphate biosynthesis III
CJM129_RS02465	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJM129_RS02465	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJM129_RS02465	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJM129_RS02470	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJM129_RS02470	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJM129_RS02470	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJM129_RS02480	PWY-5667	CDP-diacylglycerol biosynthesis I
CJM129_RS02480	PWY-5981	CDP-diacylglycerol biosynthesis III
CJM129_RS02480	PWY-6453	stigma estolide biosynthesis
CJM129_RS02480	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CJM129_RS02480	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CJM129_RS02480	PWY-7587	oleate biosynthesis III (cyanobacteria)
CJM129_RS02480	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
CJM129_RS02540	PWY-5913	TCA cycle VI (obligate autotrophs)
CJM129_RS02540	PWY-6549	L-glutamine biosynthesis III
CJM129_RS02540	PWY-6728	methylaspartate cycle
CJM129_RS02540	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJM129_RS02540	PWY-7124	ethylene biosynthesis V (engineered)
CJM129_RS02540	PWY-7254	TCA cycle VII (acetate-producers)
CJM129_RS02540	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJM129_RS02550	PWY-5392	reductive TCA cycle II
CJM129_RS02550	PWY-5537	pyruvate fermentation to acetate V
CJM129_RS02550	PWY-5538	pyruvate fermentation to acetate VI
CJM129_RS02550	PWY-5690	TCA cycle II (plants and fungi)
CJM129_RS02550	PWY-5913	TCA cycle VI (obligate autotrophs)
CJM129_RS02550	PWY-6728	methylaspartate cycle
CJM129_RS02550	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJM129_RS02550	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJM129_RS02555	PWY-5392	reductive TCA cycle II
CJM129_RS02555	PWY-5537	pyruvate fermentation to acetate V
CJM129_RS02555	PWY-5538	pyruvate fermentation to acetate VI
CJM129_RS02555	PWY-5690	TCA cycle II (plants and fungi)
CJM129_RS02555	PWY-5913	TCA cycle VI (obligate autotrophs)
CJM129_RS02555	PWY-6728	methylaspartate cycle
CJM129_RS02555	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJM129_RS02555	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJM129_RS02595	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJM129_RS02610	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJM129_RS02610	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJM129_RS02615	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CJM129_RS02615	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CJM129_RS02615	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CJM129_RS02615	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CJM129_RS02615	PWY-6978	plastoquinol-9 biosynthesis II
CJM129_RS02680	PWY-3341	L-proline biosynthesis III
CJM129_RS02680	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJM129_RS02765	PWY-6167	flavin biosynthesis II (archaea)
CJM129_RS02765	PWY-6168	flavin biosynthesis III (fungi)
CJM129_RS02765	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJM129_RS02775	PWY-5101	L-isoleucine biosynthesis II
CJM129_RS02775	PWY-5103	L-isoleucine biosynthesis III
CJM129_RS02775	PWY-5104	L-isoleucine biosynthesis IV
CJM129_RS02775	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJM129_RS02775	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJM129_RS02775	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJM129_RS02775	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJM129_RS02780	PWY-5101	L-isoleucine biosynthesis II
CJM129_RS02780	PWY-5103	L-isoleucine biosynthesis III
CJM129_RS02780	PWY-5104	L-isoleucine biosynthesis IV
CJM129_RS02780	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJM129_RS02780	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJM129_RS02780	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJM129_RS02780	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJM129_RS02790	PWY-6700	queuosine biosynthesis
CJM129_RS02815	PWY-2941	L-lysine biosynthesis II
CJM129_RS02815	PWY-2942	L-lysine biosynthesis III
CJM129_RS02815	PWY-5097	L-lysine biosynthesis VI
CJM129_RS02815	PWY-6559	spermidine biosynthesis II
CJM129_RS02815	PWY-6562	norspermidine biosynthesis
CJM129_RS02815	PWY-7153	grixazone biosynthesis
CJM129_RS02830	PWY-6614	tetrahydrofolate biosynthesis
CJM129_RS02850	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CJM129_RS02850	PWY-6167	flavin biosynthesis II (archaea)
CJM129_RS02850	PWY-6168	flavin biosynthesis III (fungi)
CJM129_RS02890	PWY-1042	glycolysis IV (plant cytosol)
CJM129_RS02890	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJM129_RS02890	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJM129_RS02890	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJM129_RS02890	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJM129_RS03055	PWY-5103	L-isoleucine biosynthesis III
CJM129_RS03055	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJM129_RS03075	PWY-6825	phosphatidylcholine biosynthesis V
CJM129_RS03090	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS03100	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CJM129_RS03100	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJM129_RS03100	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CJM129_RS03130	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJM129_RS03130	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CJM129_RS03220	PWY-4983	L-citrulline-nitric oxide cycle
CJM129_RS03220	PWY-4984	urea cycle
CJM129_RS03220	PWY-5	canavanine biosynthesis
CJM129_RS03220	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJM129_RS03220	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJM129_RS03320	PWY-1281	sulfoacetaldehyde degradation I
CJM129_RS03320	PWY-5482	pyruvate fermentation to acetate II
CJM129_RS03320	PWY-5485	pyruvate fermentation to acetate IV
CJM129_RS03320	PWY-5497	purine nucleobases degradation II (anaerobic)
CJM129_RS03320	PWY-6637	sulfolactate degradation II
CJM129_RS03325	PWY-5482	pyruvate fermentation to acetate II
CJM129_RS03325	PWY-5485	pyruvate fermentation to acetate IV
CJM129_RS03325	PWY-5497	purine nucleobases degradation II (anaerobic)
CJM129_RS03345	PWY-2201	folate transformations I
CJM129_RS03375	PWY-381	nitrate reduction II (assimilatory)
CJM129_RS03375	PWY-5675	nitrate reduction V (assimilatory)
CJM129_RS03375	PWY-6549	L-glutamine biosynthesis III
CJM129_RS03375	PWY-6963	ammonia assimilation cycle I
CJM129_RS03375	PWY-6964	ammonia assimilation cycle II
CJM129_RS03390	PWY-6123	inosine-5'-phosphate biosynthesis I
CJM129_RS03390	PWY-7234	inosine-5'-phosphate biosynthesis III
CJM129_RS03415	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
CJM129_RS03445	PWY-6829	tRNA methylation (yeast)
CJM129_RS03445	PWY-7285	methylwyosine biosynthesis
CJM129_RS03445	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CJM129_RS03455	PWY-5691	urate degradation to allantoin I
CJM129_RS03455	PWY-7394	urate degradation to allantoin II
CJM129_RS03460	PWY-6164	3-dehydroquinate biosynthesis I
CJM129_RS03475	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJM129_RS03695	PWY-6936	seleno-amino acid biosynthesis
CJM129_RS03695	PWY-7274	D-cycloserine biosynthesis
CJM129_RS03700	PWY-40	putrescine biosynthesis I
CJM129_RS03700	PWY-43	putrescine biosynthesis II
CJM129_RS03700	PWY-6305	putrescine biosynthesis IV
CJM129_RS03700	PWY-6834	spermidine biosynthesis III
CJM129_RS03710	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJM129_RS03710	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJM129_RS03710	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJM129_RS03710	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CJM129_RS03710	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJM129_RS03710	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJM129_RS03830	PWY-2201	folate transformations I
CJM129_RS03830	PWY-5497	purine nucleobases degradation II (anaerobic)
CJM129_RS03855	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJM129_RS03855	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJM129_RS03870	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJM129_RS03870	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJM129_RS03900	PWY-5686	UMP biosynthesis
CJM129_RS03910	PWY-2941	L-lysine biosynthesis II
CJM129_RS03910	PWY-2942	L-lysine biosynthesis III
CJM129_RS03910	PWY-5097	L-lysine biosynthesis VI
CJM129_RS03945	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJM129_RS03965	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJM129_RS03965	PWY-5667	CDP-diacylglycerol biosynthesis I
CJM129_RS03965	PWY-6453	stigma estolide biosynthesis
CJM129_RS03965	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CJM129_RS03965	PWY-7587	oleate biosynthesis III (cyanobacteria)
CJM129_RS04035	PWY-5747	2-methylcitrate cycle II
CJM129_RS04060	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJM129_RS04085	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJM129_RS04095	PWY-5669	phosphatidylethanolamine biosynthesis I
CJM129_RS04125	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJM129_RS04135	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CJM129_RS04135	PWY-2201	folate transformations I
CJM129_RS04135	PWY-3841	folate transformations II
CJM129_RS04135	PWY-5030	L-histidine degradation III
CJM129_RS04135	PWY-5497	purine nucleobases degradation II (anaerobic)
CJM129_RS04135	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJM129_RS04145	PWY-6823	molybdenum cofactor biosynthesis
CJM129_RS04150	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJM129_RS04150	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJM129_RS04160	PWY-5958	acridone alkaloid biosynthesis
CJM129_RS04160	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJM129_RS04160	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJM129_RS04315	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJM129_RS04360	PWY-6004	glycine betaine biosynthesis V (from glycine)
CJM129_RS04365	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJM129_RS04395	PWY-6936	seleno-amino acid biosynthesis
CJM129_RS04470	PWY-6605	adenine and adenosine salvage II
CJM129_RS04470	PWY-6610	adenine and adenosine salvage IV
CJM129_RS04490	PWY-4983	L-citrulline-nitric oxide cycle
CJM129_RS04490	PWY-4984	urea cycle
CJM129_RS04490	PWY-5	canavanine biosynthesis
CJM129_RS04490	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJM129_RS04490	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJM129_RS04495	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJM129_RS04495	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJM129_RS04605	PWY-43	putrescine biosynthesis II
CJM129_RS04625	PWY-6123	inosine-5'-phosphate biosynthesis I
CJM129_RS04625	PWY-6124	inosine-5'-phosphate biosynthesis II
CJM129_RS04625	PWY-7234	inosine-5'-phosphate biosynthesis III
CJM129_RS04635	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJM129_RS04635	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJM129_RS04635	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJM129_RS04830	PWY-4981	L-proline biosynthesis II (from arginine)
CJM129_RS04830	PWY-4984	urea cycle
CJM129_RS04830	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJM129_RS04835	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJM129_RS04835	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJM129_RS04840	PWY-6168	flavin biosynthesis III (fungi)
CJM129_RS04840	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJM129_RS04900	PWY-6164	3-dehydroquinate biosynthesis I
CJM129_RS04910	PWY-6700	queuosine biosynthesis
CJM129_RS05380	PWY-2941	L-lysine biosynthesis II
CJM129_RS05380	PWY-2942	L-lysine biosynthesis III
CJM129_RS05380	PWY-5097	L-lysine biosynthesis VI
CJM129_RS05380	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJM129_RS05380	PWY-6559	spermidine biosynthesis II
CJM129_RS05380	PWY-6562	norspermidine biosynthesis
CJM129_RS05380	PWY-7153	grixazone biosynthesis
CJM129_RS05380	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJM129_RS05460	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJM129_RS05460	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJM129_RS05460	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJM129_RS05460	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJM129_RS05480	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJM129_RS05480	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJM129_RS05480	PWY-6897	thiamin salvage II
CJM129_RS05480	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CJM129_RS05480	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CJM129_RS05480	PWY-7356	thiamin salvage IV (yeast)
CJM129_RS05480	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJM129_RS05485	PWY-6892	thiazole biosynthesis I (E. coli)
CJM129_RS05485	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJM129_RS05490	PWY-6891	thiazole biosynthesis II (Bacillus)
CJM129_RS05490	PWY-6892	thiazole biosynthesis I (E. coli)
CJM129_RS05535	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJM129_RS05535	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJM129_RS05555	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJM129_RS05555	PWY-6596	adenosine nucleotides degradation I
CJM129_RS05555	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS05560	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJM129_RS05600	PWY-5269	cardiolipin biosynthesis II
CJM129_RS05600	PWY-5668	cardiolipin biosynthesis I
CJM129_RS05645	PWY-3341	L-proline biosynthesis III
CJM129_RS05645	PWY-4981	L-proline biosynthesis II (from arginine)
CJM129_RS05645	PWY-6344	L-ornithine degradation II (Stickland reaction)
CJM129_RS05665	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJM129_RS05665	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJM129_RS05670	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJM129_RS05670	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJM129_RS05670	PWY-6897	thiamin salvage II
CJM129_RS05670	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CJM129_RS05670	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CJM129_RS05670	PWY-7356	thiamin salvage IV (yeast)
CJM129_RS05670	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJM129_RS05675	PWY-6910	hydroxymethylpyrimidine salvage
CJM129_RS05675	PWY-7356	thiamin salvage IV (yeast)
CJM129_RS05675	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJM129_RS05705	PWY-2161	folate polyglutamylation
CJM129_RS05745	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJM129_RS05745	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CJM129_RS05755	PWY-5686	UMP biosynthesis
CJM129_RS05785	PWY-7560	methylerythritol phosphate pathway II
CJM129_RS05835	PWY-5669	phosphatidylethanolamine biosynthesis I
CJM129_RS05840	PWY-5669	phosphatidylethanolamine biosynthesis I
CJM129_RS05915	PWY-3821	galactose degradation III
CJM129_RS05915	PWY-6317	galactose degradation I (Leloir pathway)
CJM129_RS05915	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CJM129_RS05915	PWY-6527	stachyose degradation
CJM129_RS05915	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CJM129_RS05915	PWY-7344	UDP-D-galactose biosynthesis
CJM129_RS05960	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
CJM129_RS05960	PWY-6749	CMP-legionaminate biosynthesis I
CJM129_RS05960	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
CJM129_RS05960	PWY-7102	bisabolene biosynthesis
CJM129_RS05960	PWY-7131	CMP-legionaminate biosynthesis II
CJM129_RS05960	PWY-7721	CJM129_RS05960
CJM129_RS05960	PWY-7736	CJM129_RS05960
CJM129_RS05975	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJM129_RS05995	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
CJM129_RS06030	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS06085	PWY-5481	pyruvate fermentation to lactate
CJM129_RS06085	PWY-6901	superpathway of glucose and xylose degradation
CJM129_RS06135	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS06180	PWY-3781	aerobic respiration I (cytochrome c)
CJM129_RS06180	PWY-6692	Fe(II) oxidation
CJM129_RS06180	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
CJM129_RS06180	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJM129_RS06230	PWY-5667	CDP-diacylglycerol biosynthesis I
CJM129_RS06230	PWY-5981	CDP-diacylglycerol biosynthesis III
CJM129_RS06240	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJM129_RS06240	PWY-6153	autoinducer AI-2 biosynthesis I
CJM129_RS06240	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CJM129_RS06255	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJM129_RS06255	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJM129_RS06255	PWY-6936	seleno-amino acid biosynthesis
CJM129_RS06255	PWY-702	L-methionine biosynthesis II
CJM129_RS06260	PWY-2201	folate transformations I
CJM129_RS06260	PWY-3841	folate transformations II
CJM129_RS06340	PWY-6167	flavin biosynthesis II (archaea)
CJM129_RS06340	PWY-6168	flavin biosynthesis III (fungi)
CJM129_RS06340	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS06450	PWY-7294	xylose degradation IV
CJM129_RS06450	PWY-7295	L-arabinose degradation IV
CJM129_RS06470	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CJM129_RS06470	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CJM129_RS06495	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS06505	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJM129_RS06505	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJM129_RS06505	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJM129_RS06600	PWY-723	alkylnitronates degradation
CJM129_RS06935	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
CJM129_RS06935	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
CJM129_RS06950	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJM129_RS06970	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJM129_RS06975	PWY-1042	glycolysis IV (plant cytosol)
CJM129_RS06975	PWY-1622	formaldehyde assimilation I (serine pathway)
CJM129_RS06975	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJM129_RS06975	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJM129_RS06975	PWY-5723	Rubisco shunt
CJM129_RS06975	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJM129_RS06975	PWY-6143	CMP-pseudaminate biosynthesis
CJM129_RS06975	PWY-6886	1-butanol autotrophic biosynthesis
CJM129_RS06975	PWY-6901	superpathway of glucose and xylose degradation
CJM129_RS06975	PWY-7003	glycerol degradation to butanol
CJM129_RS06975	PWY-7124	ethylene biosynthesis V (engineered)
CJM129_RS06975	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJM129_RS06975	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
CJM129_RS06975	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
CJM129_RS06975	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
CJM129_RS06975	PWY-7719	CJM129_RS06975
CJM129_RS07015	PWY-4381	fatty acid biosynthesis initiation I
CJM129_RS07050	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJM129_RS07050	PWY-6143	CMP-pseudaminate biosynthesis
CJM129_RS07080	PWY-6143	CMP-pseudaminate biosynthesis
CJM129_RS07105	PWY-1361	benzoyl-CoA degradation I (aerobic)
CJM129_RS07105	PWY-5109	2-methylbutanoate biosynthesis
CJM129_RS07105	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CJM129_RS07105	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CJM129_RS07105	PWY-5177	glutaryl-CoA degradation
CJM129_RS07105	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJM129_RS07105	PWY-6435	4-hydroxybenzoate biosynthesis V
CJM129_RS07105	PWY-6583	pyruvate fermentation to butanol I
CJM129_RS07105	PWY-6863	pyruvate fermentation to hexanol
CJM129_RS07105	PWY-6883	pyruvate fermentation to butanol II
CJM129_RS07105	PWY-6944	androstenedione degradation
CJM129_RS07105	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CJM129_RS07105	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CJM129_RS07105	PWY-7007	methyl ketone biosynthesis
CJM129_RS07105	PWY-7046	4-coumarate degradation (anaerobic)
CJM129_RS07105	PWY-7094	fatty acid salvage
CJM129_RS07105	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CJM129_RS07105	PWY-735	jasmonic acid biosynthesis
CJM129_RS07105	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CJM129_RS07105	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CJM129_RS07105	PWY-7726	CJM129_RS07105
CJM129_RS07125	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
CJM129_RS07125	PWY-6749	CMP-legionaminate biosynthesis I
CJM129_RS07125	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
CJM129_RS07125	PWY-7102	bisabolene biosynthesis
CJM129_RS07125	PWY-7131	CMP-legionaminate biosynthesis II
CJM129_RS07125	PWY-7721	CJM129_RS07125
CJM129_RS07125	PWY-7736	CJM129_RS07125
CJM129_RS07145	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJM129_RS07205	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CJM129_RS07205	PWY-5368	dimorphecolate biosynthesis
CJM129_RS07205	PWY-5995	linoleate biosynthesis I (plants)
CJM129_RS07205	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CJM129_RS07205	PWY-6803	phosphatidylcholine acyl editing
CJM129_RS07205	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CJM129_RS07205	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CJM129_RS07205	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CJM129_RS07205	PWY-7470	phosphatidylcholine biosynthesis VII
CJM129_RS07205	PWY-7618	ricinoleate biosynthesis
CJM129_RS07220	PWY-7294	xylose degradation IV
CJM129_RS07220	PWY-7295	L-arabinose degradation IV
CJM129_RS07220	PWY-7560	methylerythritol phosphate pathway II
CJM129_RS07225	PWY-5667	CDP-diacylglycerol biosynthesis I
CJM129_RS07225	PWY-5981	CDP-diacylglycerol biosynthesis III
CJM129_RS07240	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CJM129_RS07240	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
CJM129_RS07245	PWY-6803	phosphatidylcholine acyl editing
CJM129_RS07245	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CJM129_RS07245	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CJM129_RS07245	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CJM129_RS07280	PWY-5674	nitrate reduction IV (dissimilatory)
CJM129_RS07330	PWY-5392	reductive TCA cycle II
CJM129_RS07330	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJM129_RS07330	PWY-5690	TCA cycle II (plants and fungi)
CJM129_RS07330	PWY-5913	TCA cycle VI (obligate autotrophs)
CJM129_RS07330	PWY-6728	methylaspartate cycle
CJM129_RS07330	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJM129_RS07330	PWY-7254	TCA cycle VII (acetate-producers)
CJM129_RS07330	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJM129_RS07340	PWY-6749	CMP-legionaminate biosynthesis I
CJM129_RS07350	PWY-5198	factor 420 biosynthesis
CJM129_RS07350	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
CJM129_RS07350	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
CJM129_RS07380	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CJM129_RS07460	PWY-6123	inosine-5'-phosphate biosynthesis I
CJM129_RS07460	PWY-6124	inosine-5'-phosphate biosynthesis II
CJM129_RS07460	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS07460	PWY-7234	inosine-5'-phosphate biosynthesis III
CJM129_RS07485	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJM129_RS07485	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJM129_RS07485	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJM129_RS07485	PWY-6113	superpathway of mycolate biosynthesis
CJM129_RS07485	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJM129_RS07485	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJM129_RS07485	PWY-7663	gondoate biosynthesis (anaerobic)
CJM129_RS07485	PWY-7664	oleate biosynthesis IV (anaerobic)
CJM129_RS07485	PWYG-321	mycolate biosynthesis
CJM129_RS07490	PWY-1042	glycolysis IV (plant cytosol)
CJM129_RS07490	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJM129_RS07490	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJM129_RS07490	PWY-7003	glycerol degradation to butanol
CJM129_RS07495	PWY-1042	glycolysis IV (plant cytosol)
CJM129_RS07495	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJM129_RS07495	PWY-6886	1-butanol autotrophic biosynthesis
CJM129_RS07495	PWY-6901	superpathway of glucose and xylose degradation
CJM129_RS07495	PWY-7003	glycerol degradation to butanol
CJM129_RS07500	PWY-1042	glycolysis IV (plant cytosol)
CJM129_RS07500	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJM129_RS07500	PWY-6901	superpathway of glucose and xylose degradation
CJM129_RS07500	PWY-7003	glycerol degradation to butanol
CJM129_RS07505	PWY-5381	pyridine nucleotide cycling (plants)
CJM129_RS07505	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJM129_RS07520	PWY-6749	CMP-legionaminate biosynthesis I
CJM129_RS07530	PWY-6012	acyl carrier protein metabolism I
CJM129_RS07530	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CJM129_RS07605	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
CJM129_RS07615	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
CJM129_RS07630	PWY-5481	pyruvate fermentation to lactate
CJM129_RS07630	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CJM129_RS07630	PWY-6901	superpathway of glucose and xylose degradation
CJM129_RS07770	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJM129_RS07770	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJM129_RS07770	PWY-6896	thiamin salvage I
CJM129_RS07770	PWY-6897	thiamin salvage II
CJM129_RS07785	PWY-6825	phosphatidylcholine biosynthesis V
CJM129_RS07920	PWY-3781	aerobic respiration I (cytochrome c)
CJM129_RS07920	PWY-4521	arsenite oxidation I (respiratory)
CJM129_RS07920	PWY-6692	Fe(II) oxidation
CJM129_RS07920	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJM129_RS07925	PWY-3781	aerobic respiration I (cytochrome c)
CJM129_RS07925	PWY-4521	arsenite oxidation I (respiratory)
CJM129_RS07925	PWY-6692	Fe(II) oxidation
CJM129_RS07925	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJM129_RS07945	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJM129_RS07945	PWY-5686	UMP biosynthesis
CJM129_RS07945	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJM129_RS07965	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJM129_RS07990	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CJM129_RS07990	PWY-6853	ethylene biosynthesis II (microbes)
CJM129_RS07990	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJM129_RS07995	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CJM129_RS08050	PWY-6562	norspermidine biosynthesis
CJM129_RS08065	PWY-6823	molybdenum cofactor biosynthesis
CJM129_RS08070	PWY-6823	molybdenum cofactor biosynthesis
CJM129_RS08120	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJM129_RS08120	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJM129_RS08120	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJM129_RS08130	PWY-2941	L-lysine biosynthesis II
CJM129_RS08130	PWY-5097	L-lysine biosynthesis VI
CJM129_RS08150	PWY-3801	sucrose degradation II (sucrose synthase)
CJM129_RS08150	PWY-5054	sorbitol biosynthesis I
CJM129_RS08150	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CJM129_RS08150	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJM129_RS08150	PWY-5659	GDP-mannose biosynthesis
CJM129_RS08150	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJM129_RS08150	PWY-621	sucrose degradation III (sucrose invertase)
CJM129_RS08150	PWY-622	starch biosynthesis
CJM129_RS08150	PWY-6981	chitin biosynthesis
CJM129_RS08150	PWY-6992	1,5-anhydrofructose degradation
CJM129_RS08150	PWY-7238	sucrose biosynthesis II
CJM129_RS08150	PWY-7347	sucrose biosynthesis III
CJM129_RS08150	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJM129_RS08155	PWY-3801	sucrose degradation II (sucrose synthase)
CJM129_RS08155	PWY-6527	stachyose degradation
CJM129_RS08155	PWY-7238	sucrose biosynthesis II
CJM129_RS08155	PWY-7343	UDP-glucose biosynthesis
CJM129_RS08160	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CJM129_RS08160	PWY-7118	chitin degradation to ethanol
CJM129_RS08495	PWY-7560	methylerythritol phosphate pathway II
CJM129_RS08505	PWY-5278	sulfite oxidation III
CJM129_RS08505	PWY-5340	sulfate activation for sulfonation
CJM129_RS08505	PWY-6683	sulfate reduction III (assimilatory)
CJM129_RS08505	PWY-6932	selenate reduction
CJM129_RS08510	PWY-5269	cardiolipin biosynthesis II
CJM129_RS08510	PWY-5668	cardiolipin biosynthesis I
CJM129_RS08525	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CJM129_RS08525	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJM129_RS08590	PWY-5525	D-glucuronate degradation I
CJM129_RS08650	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJM129_RS08705	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJM129_RS08705	PWY-5723	Rubisco shunt
CJM129_RS08705	PWY-6891	thiazole biosynthesis II (Bacillus)
CJM129_RS08705	PWY-6892	thiazole biosynthesis I (E. coli)
CJM129_RS08705	PWY-6901	superpathway of glucose and xylose degradation
CJM129_RS08705	PWY-7560	methylerythritol phosphate pathway II
CJM129_RS08740	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJM129_RS08740	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJM129_RS08940	PWY-1042	glycolysis IV (plant cytosol)
CJM129_RS08940	PWY-1622	formaldehyde assimilation I (serine pathway)
CJM129_RS08940	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJM129_RS08940	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJM129_RS08940	PWY-5723	Rubisco shunt
CJM129_RS08940	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJM129_RS08940	PWY-6886	1-butanol autotrophic biosynthesis
CJM129_RS08940	PWY-6901	superpathway of glucose and xylose degradation
CJM129_RS08940	PWY-7003	glycerol degradation to butanol
CJM129_RS08940	PWY-7124	ethylene biosynthesis V (engineered)
CJM129_RS08940	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJM129_RS08960	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJM129_RS08960	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJM129_RS08985	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJM129_RS09125	PWY-2201	folate transformations I
CJM129_RS09170	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJM129_RS09175	PWY-6871	3-methylbutanol biosynthesis
CJM129_RS09190	PWY-6700	queuosine biosynthesis
CJM129_RS09205	PWY-5344	L-homocysteine biosynthesis
CJM129_RS09205	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CJM129_RS09465	PWY-4041	&gamma;-glutamyl cycle
CJM129_RS09465	PWY-5826	hypoglycin biosynthesis
