locus-tag	class	description
CJJRM1285_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CJJRM1285_RS00010	COG0592	DNA-directed DNA polymerase activity
CJJRM1285_RS00015	COG0187	DNA topoisomerase II activity
CJJRM1285_RS00030	COG2056	Na+-H+ antiporter family
CJJRM1285_RS00035	COG0070	glutamate synthase
CJJRM1285_RS00035	COG0069	glutamate synthase activity
CJJRM1285_RS00035	COG0067	glutamate synthase
CJJRM1285_RS00040	COG0493	'glutamate synthase
CJJRM1285_RS00045	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CJJRM1285_RS00055	COG1592	Rubrerythrin
CJJRM1285_RS00060	COG0129	dihydroxy-acid dehydratase activity
CJJRM1285_RS00065	COG3477	response to acidic pH
CJJRM1285_RS00075	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CJJRM1285_RS00090	COG0840	transmembrane signaling receptor activity
CJJRM1285_RS00095	COG1858	cytochrome C peroxidase
CJJRM1285_RS00100	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJJRM1285_RS00105	COG0564	pseudouridine synthase activity
CJJRM1285_RS00110	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CJJRM1285_RS00115	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CJJRM1285_RS00140	COG0252	asparaginase activity
CJJRM1285_RS00170	COG0484	heat shock protein binding
CJJRM1285_RS00185	COG1333	cytochrome c biogenesis protein
CJJRM1285_RS00185	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJJRM1285_RS00190	COG0405	Gamma-glutamyltransferase
CJJRM1285_RS00220	COG2814	Major facilitator Superfamily
CJJRM1285_RS00240	COG1217	gtp-binding protein TYPA
CJJRM1285_RS00255	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CJJRM1285_RS00295	COG0471	metal ion transport
CJJRM1285_RS00300	COG0482	sulfurtransferase activity
CJJRM1285_RS00330	COG1776	CheC inhibitor of MCP methylation
CJJRM1285_RS00330	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJJRM1285_RS00335	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJJRM1285_RS00340	COG1191	sigma factor activity
CJJRM1285_RS00350	COG0455	bacterial-type flagellum organization
CJJRM1285_RS00355	COG1419	protein localization to endoplasmic reticulum
CJJRM1285_RS00360	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CJJRM1285_RS00365	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CJJRM1285_RS00370	COG0402	S-adenosylhomocysteine deaminase activity
CJJRM1285_RS00375	COG0616	signal peptide processing
CJJRM1285_RS00405	COG1139	Iron-sulfur cluster binding protein
CJJRM1285_RS00410	COG0247	lactate metabolic process
CJJRM1285_RS00425	COG3021	interspecies interaction between organisms
CJJRM1285_RS00440	COG1271	oxidase subunit
CJJRM1285_RS00445	COG1294	oxidase, subunit
CJJRM1285_RS00455	COG1794	racemase activity, acting on amino acids and derivatives
CJJRM1285_RS00460	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CJJRM1285_RS00465	COG1027	Aspartate ammonia-lyase
CJJRM1285_RS00470	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CJJRM1285_RS00500	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CJJRM1285_RS00505	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CJJRM1285_RS00510	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CJJRM1285_RS00520	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CJJRM1285_RS00525	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CJJRM1285_RS00525	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CJJRM1285_RS00530	COG1192	Involved in chromosome partitioning
CJJRM1285_RS00535	COG1475	DNA binding
CJJRM1285_RS00545	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CJJRM1285_RS00550	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CJJRM1285_RS00555	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CJJRM1285_RS00565	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CJJRM1285_RS00570	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CJJRM1285_RS00575	COG0811	peptide transport
CJJRM1285_RS00580	COG0848	biopolymer transport protein
CJJRM1285_RS00595	COG2885	chlorophyll binding
CJJRM1285_RS00605	COG1047	Peptidyl-prolyl cis-trans
CJJRM1285_RS00610	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CJJRM1285_RS00615	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CJJRM1285_RS00620	COG0037	tRNA processing
CJJRM1285_RS00635	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CJJRM1285_RS00645	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CJJRM1285_RS00655	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CJJRM1285_RS00665	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CJJRM1285_RS00670	COG0483	inositol monophosphate 1-phosphatase activity
CJJRM1285_RS00675	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJJRM1285_RS00700	COG0083	homoserine kinase activity
CJJRM1285_RS00735	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CJJRM1285_RS00740	COG1121	(ABC) transporter
CJJRM1285_RS00760	COG0492	ferredoxin-NADP+ reductase activity
CJJRM1285_RS00765	COG3118	belongs to the thioredoxin family
CJJRM1285_RS00770	COG0792	nuclease activity
CJJRM1285_RS00775	COG0460	homoserine dehydrogenase
CJJRM1285_RS00780	COG0436	Aminotransferase
CJJRM1285_RS00795	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJJRM1285_RS00800	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CJJRM1285_RS00805	COG0254	rRNA binding
CJJRM1285_RS00810	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CJJRM1285_RS00830	COG0602	queuosine metabolic process
CJJRM1285_RS00835	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CJJRM1285_RS00860	COG1971	Probably functions as a manganese efflux pump
CJJRM1285_RS00875	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CJJRM1285_RS00905	COG1840	ABC-type Fe3 transport system, periplasmic component
CJJRM1285_RS00915	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CJJRM1285_RS00920	COG1253	flavin adenine dinucleotide binding
CJJRM1285_RS00930	COG2824	Alkylphosphonate utilization operon protein PhnA
CJJRM1285_RS00935	COG0861	Integral membrane protein TerC family
CJJRM1285_RS00940	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CJJRM1285_RS00945	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CJJRM1285_RS00945	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CJJRM1285_RS00955	COG0606	chelatase, subunit chli
CJJRM1285_RS00960	COG0242	peptide deformylase activity
CJJRM1285_RS00970	COG0544	peptidyl-prolyl cis-trans isomerase activity
CJJRM1285_RS00975	COG0302	gtp cyclohydrolase
CJJRM1285_RS00980	COG1157	protein secretion by the type III secretion system
CJJRM1285_RS00985	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CJJRM1285_RS00990	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CJJRM1285_RS00995	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CJJRM1285_RS00995	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CJJRM1285_RS01020	COG2851	Citrate transporter
CJJRM1285_RS01025	COG1297	OPT oligopeptide transporter protein
CJJRM1285_RS01030	COG1968	undecaprenyl-diphosphatase activity
CJJRM1285_RS01040	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CJJRM1285_RS01090	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CJJRM1285_RS01095	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CJJRM1285_RS01100	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CJJRM1285_RS01115	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CJJRM1285_RS01130	COG0233	cytoplasmic translational termination
CJJRM1285_RS01135	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CJJRM1285_RS01140	COG0670	Belongs to the BI1 family
CJJRM1285_RS01145	COG0288	reversible hydration of carbon dioxide
CJJRM1285_RS01150	COG0668	transmembrane transport
CJJRM1285_RS01175	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CJJRM1285_RS01180	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CJJRM1285_RS01185	COG0840	transmembrane signaling receptor activity
CJJRM1285_RS01185	COG3290	protein histidine kinase activity
CJJRM1285_RS01205	COG0477	Major facilitator Superfamily
CJJRM1285_RS01220	COG2921	Belongs to the UPF0250 family
CJJRM1285_RS01230	COG0708	Exodeoxyribonuclease III
CJJRM1285_RS01235	COG2194	sulfuric ester hydrolase activity
CJJRM1285_RS01240	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CJJRM1285_RS01250	COG0418	dihydroorotase activity
CJJRM1285_RS01260	COG2226	methyltransferase
CJJRM1285_RS01270	COG0428	transporter
CJJRM1285_RS01275	COG0243	molybdopterin cofactor binding
CJJRM1285_RS01295	COG0330	HflC and HflK could
CJJRM1285_RS01305	COG1942	4-Oxalocrotonate Tautomerase
CJJRM1285_RS01310	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CJJRM1285_RS01315	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CJJRM1285_RS01320	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CJJRM1285_RS01325	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJJRM1285_RS01330	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CJJRM1285_RS01335	COG1077	Cell shape determining protein MreB Mrl
CJJRM1285_RS01345	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CJJRM1285_RS01355	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CJJRM1285_RS01365	COG0835	chemotaxis
CJJRM1285_RS01370	COG2198	Histidine kinase
CJJRM1285_RS01370	COG0784	Response regulator, receiver
CJJRM1285_RS01370	COG0643	Histidine kinase
CJJRM1285_RS01375	COG0784	Response regulator, receiver
CJJRM1285_RS01375	COG0835	chemotaxis
CJJRM1285_RS01385	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJJRM1285_RS01390	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJJRM1285_RS01420	COG0454	-acetyltransferase
CJJRM1285_RS01465	COG4106	trans-aconitate 2-methyltransferase activity
CJJRM1285_RS01470	COG2830	Protein of unknown function (DUF452)
CJJRM1285_RS01480	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJJRM1285_RS01485	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CJJRM1285_RS01490	COG2076	Multidrug Resistance protein
CJJRM1285_RS01505	COG0193	aminoacyl-tRNA hydrolase activity
CJJRM1285_RS01515	COG0019	diaminopimelate decarboxylase activity
CJJRM1285_RS01540	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJJRM1285_RS01550	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CJJRM1285_RS01575	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CJJRM1285_RS01580	COG0251	oxidation-reduction process
CJJRM1285_RS01585	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CJJRM1285_RS01595	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CJJRM1285_RS01615	COG0450	alkyl hydroperoxide reductase
CJJRM1285_RS01620	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJJRM1285_RS01625	COG1360	Flagellar Motor Protein
CJJRM1285_RS01630	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CJJRM1285_RS01640	COG0477	Major facilitator Superfamily
CJJRM1285_RS01650	COG1238	metal cluster binding
CJJRM1285_RS01655	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CJJRM1285_RS01660	COG0730	response to heat
CJJRM1285_RS01675	COG0512	Glutamine amidotransferase of anthranilate synthase
CJJRM1285_RS01675	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJJRM1285_RS01685	COG0133	tryptophan synthase activity
CJJRM1285_RS01700	COG1776	CheC inhibitor of MCP methylation
CJJRM1285_RS01700	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJJRM1285_RS01715	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJJRM1285_RS01720	COG0745	RESPONSE REGULATOR receiver
CJJRM1285_RS01730	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CJJRM1285_RS01740	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CJJRM1285_RS01745	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CJJRM1285_RS01750	COG1981	membrane
CJJRM1285_RS01755	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJJRM1285_RS01765	COG1538	Outer membrane efflux protein
CJJRM1285_RS01775	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJJRM1285_RS01790	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CJJRM1285_RS01800	COG0754	glutathionylspermidine amidase activity
CJJRM1285_RS01805	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJJRM1285_RS01810	COG1666	GTP binding
CJJRM1285_RS01825	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJJRM1285_RS01830	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
CJJRM1285_RS01835	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CJJRM1285_RS01840	COG0284	orotidine-5'-phosphate decarboxylase activity
CJJRM1285_RS01845	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CJJRM1285_RS01850	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CJJRM1285_RS01855	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CJJRM1285_RS01865	COG1160	GTP binding
CJJRM1285_RS01870	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CJJRM1285_RS01895	COG0469	pyruvate kinase activity
CJJRM1285_RS01900	COG0579	oxidoreductase
CJJRM1285_RS01905	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CJJRM1285_RS01925	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CJJRM1285_RS01960	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CJJRM1285_RS01980	COG1053	succinate dehydrogenase
CJJRM1285_RS01985	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJJRM1285_RS02045	COG0488	(ABC) transporter
CJJRM1285_RS02060	COG1739	Uncharacterized protein family UPF0029
CJJRM1285_RS02100	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CJJRM1285_RS02105	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CJJRM1285_RS02110	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CJJRM1285_RS02120	COG1028	Short-chain dehydrogenase reductase Sdr
CJJRM1285_RS02130	COG1053	succinate dehydrogenase
CJJRM1285_RS02135	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJJRM1285_RS02140	COG2048	Heterodisulfide reductase, subunit B
CJJRM1285_RS02145	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CJJRM1285_RS02150	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJJRM1285_RS02155	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJJRM1285_RS02175	COG0840	transmembrane signaling receptor activity
CJJRM1285_RS02185	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CJJRM1285_RS02190	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CJJRM1285_RS02220	COG2121	Domain of unknown function (DUF374)
CJJRM1285_RS02235	COG0195	Participates in both transcription termination and antitermination
CJJRM1285_RS02245	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CJJRM1285_RS02250	COG0612	Peptidase, M16
CJJRM1285_RS02255	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CJJRM1285_RS02260	COG2346	COG2346, Truncated hemoglobins
CJJRM1285_RS02275	COG0765	amino acid transport
CJJRM1285_RS02305	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CJJRM1285_RS02310	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CJJRM1285_RS02325	COG0250	Participates in transcription elongation, termination and antitermination
CJJRM1285_RS02330	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CJJRM1285_RS02335	COG0081	regulation of translation
CJJRM1285_RS02340	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CJJRM1285_RS02345	COG0222	ribosome binding
CJJRM1285_RS02350	COG0085	RNA polymerase activity
CJJRM1285_RS02355	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CJJRM1285_RS02360	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CJJRM1285_RS02365	COG0049	tRNA binding
CJJRM1285_RS02400	COG0134	indole-3-glycerol-phosphate synthase activity
CJJRM1285_RS02410	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
CJJRM1285_RS02440	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CJJRM1285_RS02445	COG0673	inositol 2-dehydrogenase activity
CJJRM1285_RS02455	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CJJRM1285_RS02460	COG0424	maF-like protein
CJJRM1285_RS02470	COG0542	response to heat
CJJRM1285_RS02475	COG1937	Protein conserved in bacteria
CJJRM1285_RS02480	COG0793	Belongs to the peptidase S41A family
CJJRM1285_RS02485	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CJJRM1285_RS02490	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CJJRM1285_RS02495	COG0047	phosphoribosylformylglycinamidine synthase activity
CJJRM1285_RS02505	COG0204	Acyl-transferase
CJJRM1285_RS02520	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CJJRM1285_RS02540	COG1677	Flagellar hook-basal body complex protein FliE
CJJRM1285_RS02545	COG1558	bacterial-type flagellum-dependent cell motility
CJJRM1285_RS02550	COG1815	bacterial-type flagellum-dependent cell motility
CJJRM1285_RS02570	COG0039	L-malate dehydrogenase activity
CJJRM1285_RS02580	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CJJRM1285_RS02590	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CJJRM1285_RS02590	COG0674	pyruvate-flavodoxin oxidoreductase activity
CJJRM1285_RS02595	COG1013	pyruvate-flavodoxin oxidoreductase activity
CJJRM1285_RS02615	COG0142	geranyltranstransferase activity
CJJRM1285_RS02620	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CJJRM1285_RS02625	COG0442	prolyl-tRNA aminoacylation
CJJRM1285_RS02635	COG0181	hydroxymethylbilane synthase activity
CJJRM1285_RS02640	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CJJRM1285_RS02650	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CJJRM1285_RS02670	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CJJRM1285_RS02700	COG1289	transmembrane transporter activity
CJJRM1285_RS02705	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CJJRM1285_RS02710	COG0492	ferredoxin-NADP+ reductase activity
CJJRM1285_RS02725	COG0305	Participates in initiation and elongation during chromosome replication
CJJRM1285_RS02785	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJJRM1285_RS02785	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJJRM1285_RS02790	COG1610	YqeY-like protein
CJJRM1285_RS02795	COG0028	Belongs to the TPP enzyme family
CJJRM1285_RS02800	COG0440	acetolactate synthase activity
CJJRM1285_RS02810	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CJJRM1285_RS02815	COG0805	protein transport
CJJRM1285_RS02825	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJJRM1285_RS02830	COG0494	nUDIX hydrolase
CJJRM1285_RS02835	COG0527	aspartate kinase activity
CJJRM1285_RS02850	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CJJRM1285_RS02855	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CJJRM1285_RS02870	COG0196	riboflavin kinase activity
CJJRM1285_RS02875	COG2890	protein-(glutamine-N5) methyltransferase activity
CJJRM1285_RS02890	COG2860	membrane
CJJRM1285_RS02900	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CJJRM1285_RS02905	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJJRM1285_RS02910	COG0191	fructose-bisphosphate aldolase activity
CJJRM1285_RS02930	COG0733	neurotransmitter:sodium symporter activity
CJJRM1285_RS02935	COG2258	MOSC domain
CJJRM1285_RS02950	COG1473	amidohydrolase
CJJRM1285_RS02955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJJRM1285_RS02960	COG0577	efflux transmembrane transporter activity
CJJRM1285_RS02960	COG1136	(ABC) transporter
CJJRM1285_RS02965	COG1538	Outer membrane efflux protein
CJJRM1285_RS02980	COG1696	Membrane protein involved in D-alanine export
CJJRM1285_RS02985	COG1528	Iron-storage protein
CJJRM1285_RS02990	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CJJRM1285_RS02995	COG0573	inorganic phosphate transmembrane transporter activity
CJJRM1285_RS03000	COG0581	inorganic phosphate transmembrane transporter activity
CJJRM1285_RS03015	COG0534	Mate efflux family protein
CJJRM1285_RS03030	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CJJRM1285_RS03040	COG0298	carbon dioxide binding
CJJRM1285_RS03045	COG0409	Hydrogenase expression formation protein
CJJRM1285_RS03050	COG0309	Hydrogenase expression formation protein (HypE)
CJJRM1285_RS03055	COG0375	protein maturation
CJJRM1285_RS03070	COG0557	exoribonuclease II activity
CJJRM1285_RS03075	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CJJRM1285_RS03085	COG0758	DNA mediated transformation
CJJRM1285_RS03100	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJJRM1285_RS03105	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CJJRM1285_RS03110	COG0563	adenylate kinase activity
CJJRM1285_RS03115	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CJJRM1285_RS03120	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CJJRM1285_RS03125	COG0497	DNA recombination
CJJRM1285_RS03135	COG0084	hydrolase, TatD family'
CJJRM1285_RS03140	COG1388	LysM domain
CJJRM1285_RS03140	COG0791	NLP P60 protein
CJJRM1285_RS03145	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CJJRM1285_RS03210	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CJJRM1285_RS03215	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CJJRM1285_RS03220	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CJJRM1285_RS03225	COG0359	binds to the 23S rRNA
CJJRM1285_RS03230	COG0137	argininosuccinate synthase activity
CJJRM1285_RS03235	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CJJRM1285_RS03240	COG0802	atpase or kinase
CJJRM1285_RS03245	COG1137	ATPase activity
CJJRM1285_RS03250	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CJJRM1285_RS03255	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CJJRM1285_RS03260	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CJJRM1285_RS03265	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CJJRM1285_RS03270	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
CJJRM1285_RS03275	COG2205	protein histidine kinase activity
CJJRM1285_RS03280	COG0556	nucleotide-excision repair
CJJRM1285_RS03300	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CJJRM1285_RS03310	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CJJRM1285_RS03315	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
CJJRM1285_RS03320	COG0280	phosphate acetyltransferase
CJJRM1285_RS03345	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJJRM1285_RS03350	COG0849	cell division
CJJRM1285_RS03355	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CJJRM1285_RS03360	COG4786	Flagellar basal body rod
CJJRM1285_RS03365	COG4786	Flagellar basal body rod
CJJRM1285_RS03370	COG0174	glutamine synthetase
CJJRM1285_RS03380	COG0826	peptidase U32
CJJRM1285_RS03385	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CJJRM1285_RS03395	COG0752	glycyl-tRNA synthetase alpha subunit
CJJRM1285_RS03400	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CJJRM1285_RS03410	COG1519	Transferase
CJJRM1285_RS03410	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CJJRM1285_RS03415	COG0564	pseudouridine synthase activity
CJJRM1285_RS03420	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CJJRM1285_RS03425	COG0228	four-way junction DNA binding
CJJRM1285_RS03430	COG1837	Belongs to the UPF0109 family
CJJRM1285_RS03435	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CJJRM1285_RS03440	COG0336	Belongs to the RNA methyltransferase TrmD family
CJJRM1285_RS03445	COG0335	large ribosomal subunit rRNA binding
CJJRM1285_RS03455	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CJJRM1285_RS03460	COG1393	Belongs to the ArsC family
CJJRM1285_RS03465	COG0587	DNA-directed DNA polymerase activity
CJJRM1285_RS03470	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CJJRM1285_RS03485	COG2890	protein-(glutamine-N5) methyltransferase activity
CJJRM1285_RS03490	COG0501	Belongs to the peptidase M48B family
CJJRM1285_RS03500	COG2856	Zn peptidase
CJJRM1285_RS03530	COG0521	Mo-molybdopterin cofactor biosynthetic process
CJJRM1285_RS03535	COG0598	Magnesium transport protein CorA
CJJRM1285_RS03565	COG3842	ATPase activity
CJJRM1285_RS03650	COG0675	Transposase, IS605 OrfB family
CJJRM1285_RS03660	COG4771	TonB-dependent receptor
CJJRM1285_RS03665	COG1420	regulation of RNA biosynthetic process
CJJRM1285_RS03675	COG0443	Heat shock 70 kDa protein
CJJRM1285_RS03715	COG0436	Aminotransferase
CJJRM1285_RS03720	COG1045	serine acetyltransferase
CJJRM1285_RS03725	COG1166	arginine decarboxylase activity
CJJRM1285_RS03730	COG0124	histidyl-tRNA synthetase
CJJRM1285_RS03735	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CJJRM1285_RS03740	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CJJRM1285_RS03745	COG0163	prenyltransferase activity
CJJRM1285_RS03755	COG1464	Belongs to the NlpA lipoprotein family
CJJRM1285_RS03760	COG1464	Belongs to the NlpA lipoprotein family
CJJRM1285_RS03765	COG1464	Belongs to the NlpA lipoprotein family
CJJRM1285_RS03770	COG2011	ABC-type metal ion transport system permease component
CJJRM1285_RS03775	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CJJRM1285_RS03790	COG0210	DNA helicase
CJJRM1285_RS03800	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CJJRM1285_RS03805	COG0243	molybdopterin cofactor binding
CJJRM1285_RS03810	COG0437	4 iron, 4 sulfur cluster binding
CJJRM1285_RS03815	COG0348	domain, Protein
CJJRM1285_RS03820	COG3043	anaerobic respiration
CJJRM1285_RS03855	COG0788	formyltetrahydrofolate deformylase activity
CJJRM1285_RS03860	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CJJRM1285_RS03870	COG0642	Histidine kinase
CJJRM1285_RS03895	COG1181	Belongs to the D-alanine--D-alanine ligase family
CJJRM1285_RS03900	COG0632	four-way junction helicase activity
CJJRM1285_RS03910	COG0728	peptidoglycan biosynthetic process
CJJRM1285_RS03915	COG0215	cysteine-tRNA ligase activity
CJJRM1285_RS03920	COG1132	(ABC) transporter
CJJRM1285_RS03925	COG0167	dihydroorotate dehydrogenase activity
CJJRM1285_RS03930	COG0612	Peptidase, M16
CJJRM1285_RS03940	COG1028	Short-chain dehydrogenase reductase Sdr
CJJRM1285_RS03955	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CJJRM1285_RS03960	COG1663	tetraacyldisaccharide 4'-kinase activity
CJJRM1285_RS03965	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CJJRM1285_RS03970	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CJJRM1285_RS03980	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJJRM1285_RS03995	COG1338	Plays a role in the flagellum-specific transport system
CJJRM1285_RS04000	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CJJRM1285_RS04030	COG0101	tRNA pseudouridine synthase activity
CJJRM1285_RS04035	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CJJRM1285_RS04050	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CJJRM1285_RS04055	COG1757	Na H antiporter
CJJRM1285_RS04060	COG4221	oxidoreductase activity
CJJRM1285_RS04070	COG1049	propionate catabolic process, 2-methylcitrate cycle
CJJRM1285_RS04075	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CJJRM1285_RS04085	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJJRM1285_RS04085	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJJRM1285_RS04095	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CJJRM1285_RS04120	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJJRM1285_RS04125	COG1408	metallophosphoesterase
CJJRM1285_RS04130	COG0688	phosphatidylethanolamine metabolic process
CJJRM1285_RS04160	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CJJRM1285_RS04170	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CJJRM1285_RS04175	COG0681	Belongs to the peptidase S26 family
CJJRM1285_RS04180	COG0303	'Molybdopterin
CJJRM1285_RS04185	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CJJRM1285_RS04200	COG0512	Glutamine amidotransferase of anthranilate synthase
CJJRM1285_RS04200	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJJRM1285_RS04205	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CJJRM1285_RS04210	COG0582	viral genome integration into host DNA
CJJRM1285_RS04215	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CJJRM1285_RS04220	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CJJRM1285_RS04235	COG3258	Cytochrome c
CJJRM1285_RS04260	COG2404	hydrolase activity, acting on ester bonds
CJJRM1285_RS04265	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJJRM1285_RS04270	COG1959	2 iron, 2 sulfur cluster binding
CJJRM1285_RS04275	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CJJRM1285_RS04280	COG1196	nuclear chromosome segregation
CJJRM1285_RS04280	COG1674	ftsk spoiiie
CJJRM1285_RS04285	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CJJRM1285_RS04300	COG0488	(ABC) transporter
CJJRM1285_RS04305	COG5002	protein histidine kinase activity
CJJRM1285_RS04310	COG0745	RESPONSE REGULATOR receiver
CJJRM1285_RS04315	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJJRM1285_RS04325	COG0539	negative regulation of cytoplasmic translation
CJJRM1285_RS04325	COG1185	polyribonucleotide nucleotidyltransferase activity
CJJRM1285_RS04335	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CJJRM1285_RS04340	COG0072	phenylalanine-tRNA ligase activity
CJJRM1285_RS04340	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJJRM1285_RS04345	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CJJRM1285_RS04350	COG0537	adenosine 5'-monophosphoramidase activity
CJJRM1285_RS04365	COG0765	amino acid transport
CJJRM1285_RS04375	COG1115	amino acid carrier protein
CJJRM1285_RS04380	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CJJRM1285_RS04385	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CJJRM1285_RS04410	COG1999	signal sequence binding
CJJRM1285_RS04415	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CJJRM1285_RS04420	COG0776	regulation of translation
CJJRM1285_RS04440	COG1966	Carbon starvation protein
CJJRM1285_RS04445	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CJJRM1285_RS04450	COG0765	amino acid transport
CJJRM1285_RS04455	COG0765	amino acid transport
CJJRM1285_RS04460	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJJRM1285_RS04465	COG1126	abc transporter atp-binding protein
CJJRM1285_RS04470	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CJJRM1285_RS04475	COG2201	protein-glutamate methylesterase activity
CJJRM1285_RS04490	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CJJRM1285_RS04500	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CJJRM1285_RS04505	COG0012	GTP binding
CJJRM1285_RS04510	COG0165	Argininosuccinate lyase
CJJRM1285_RS04515	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
CJJRM1285_RS04520	COG5016	pyruvate
CJJRM1285_RS04520	COG0511	ligase activity, forming carbon-carbon bonds
CJJRM1285_RS04525	COG0733	neurotransmitter:sodium symporter activity
CJJRM1285_RS04530	COG0733	neurotransmitter:sodium symporter activity
CJJRM1285_RS04900	COG0765	amino acid transport
CJJRM1285_RS04910	COG0653	protein targeting
CJJRM1285_RS04915	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CJJRM1285_RS04925	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CJJRM1285_RS04940	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CJJRM1285_RS04955	COG0840	transmembrane signaling receptor activity
CJJRM1285_RS04965	COG0138	bifunctional purine biosynthesis protein purh
CJJRM1285_RS04970	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CJJRM1285_RS04975	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CJJRM1285_RS04990	COG0706	membrane insertase activity
CJJRM1285_RS04995	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CJJRM1285_RS05000	COG0594	ribonuclease P activity
CJJRM1285_RS05005	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CJJRM1285_RS05025	COG0824	Thioesterase
CJJRM1285_RS05050	COG0500	methyltransferase
CJJRM1285_RS05070	COG2195	Cleaves the N-terminal amino acid of tripeptides
CJJRM1285_RS05075	COG0477	Major facilitator Superfamily
CJJRM1285_RS05080	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJJRM1285_RS05090	COG3022	response to hydroperoxide
CJJRM1285_RS05095	COG1473	amidohydrolase
CJJRM1285_RS05110	COG2807	transmembrane transport
CJJRM1285_RS05130	COG0247	lactate metabolic process
CJJRM1285_RS05130	COG2181	nitrate reductase activity
CJJRM1285_RS05135	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJJRM1285_RS05145	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CJJRM1285_RS05150	COG0113	porphobilinogen synthase activity
CJJRM1285_RS05155	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJJRM1285_RS05160	COG0357	Ribosomal RNA small subunit methyltransferase G
CJJRM1285_RS05170	COG2855	membrane
CJJRM1285_RS05175	COG0583	DNA-binding transcription factor activity
CJJRM1285_RS05180	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CJJRM1285_RS05200	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJJRM1285_RS05205	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJJRM1285_RS05215	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CJJRM1285_RS05225	COG0343	queuine tRNA-ribosyltransferase activity
CJJRM1285_RS05245	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJJRM1285_RS05245	COG1333	cytochrome c biogenesis protein
CJJRM1285_RS05295	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CJJRM1285_RS05300	COG2204	response regulator
CJJRM1285_RS05315	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CJJRM1285_RS05330	COG0481	GTPase activity
CJJRM1285_RS05355	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CJJRM1285_RS05365	COG0439	Biotin carboxylase
CJJRM1285_RS05370	COG0772	Belongs to the SEDS family
CJJRM1285_RS05395	COG0352	thiamine-phosphate diphosphorylase activity
CJJRM1285_RS05400	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJJRM1285_RS05405	COG2022	thiamine diphosphate biosynthetic process
CJJRM1285_RS05435	COG1193	negative regulation of DNA recombination
CJJRM1285_RS05465	COG0516	GMP reductase activity
CJJRM1285_RS05465	COG0517	IMP dehydrogenase activity
CJJRM1285_RS05485	COG1546	Belongs to the CinA family
CJJRM1285_RS05485	COG1058	Belongs to the CinA family
CJJRM1285_RS05495	COG0778	Nitroreductase
CJJRM1285_RS05500	COG0778	Nitroreductase
CJJRM1285_RS05510	COG0750	zinc metalloprotease
CJJRM1285_RS05515	COG2990	Protein conserved in bacteria
CJJRM1285_RS05520	COG0360	Binds together with S18 to 16S ribosomal RNA
CJJRM1285_RS05525	COG0629	single-stranded DNA binding
CJJRM1285_RS05530	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CJJRM1285_RS05535	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CJJRM1285_RS05545	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
CJJRM1285_RS05550	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CJJRM1285_RS05575	COG0352	thiamine-phosphate diphosphorylase activity
CJJRM1285_RS05595	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CJJRM1285_RS05605	COG0739	heme binding
CJJRM1285_RS05610	COG0285	dihydrofolate synthase activity
CJJRM1285_RS05625	COG0495	leucyl-tRNA aminoacylation
CJJRM1285_RS05630	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJJRM1285_RS05635	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJJRM1285_RS05640	COG1862	Preprotein translocase
CJJRM1285_RS05645	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CJJRM1285_RS05650	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CJJRM1285_RS05655	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
CJJRM1285_RS05675	COG0210	DNA helicase
CJJRM1285_RS05680	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CJJRM1285_RS05690	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CJJRM1285_RS05695	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CJJRM1285_RS05705	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CJJRM1285_RS05710	COG0542	response to heat
CJJRM1285_RS05715	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CJJRM1285_RS05725	COG2095	MarC family integral membrane protein
CJJRM1285_RS05730	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJJRM1285_RS05735	COG2833	Protein of unknown function (DUF455)
CJJRM1285_RS05740	COG1183	phosphatidylcholine synthase activity
CJJRM1285_RS05750	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJJRM1285_RS05760	COG0745	RESPONSE REGULATOR receiver
CJJRM1285_RS05770	COG1086	Polysaccharide biosynthesis protein
CJJRM1285_RS05775	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJJRM1285_RS05785	COG0110	maltose O-acetyltransferase activity
CJJRM1285_RS05790	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CJJRM1285_RS05795	COG0438	transferase activity, transferring glycosyl groups
CJJRM1285_RS05800	COG1287	oligosaccharyl transferase activity
CJJRM1285_RS05805	COG0438	transferase activity, transferring glycosyl groups
CJJRM1285_RS05810	COG1215	transferase activity, transferring glycosyl groups
CJJRM1285_RS05815	COG0438	transferase activity, transferring glycosyl groups
CJJRM1285_RS05820	COG1132	(ABC) transporter
CJJRM1285_RS05825	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CJJRM1285_RS05835	COG0859	PFAM glycosyl transferase family 9
CJJRM1285_RS05840	COG1560	Kdo2-lipid A biosynthetic process
CJJRM1285_RS05855	COG1442	glycosyl transferase family 8
CJJRM1285_RS05855	COG1216	Glycosyl transferase, family 2
CJJRM1285_RS05865	COG1442	glycosyl transferase family 8
CJJRM1285_RS05865	COG1216	Glycosyl transferase, family 2
CJJRM1285_RS05875	COG2089	acid synthase
CJJRM1285_RS05895	COG1216	Glycosyl transferase, family 2
CJJRM1285_RS05920	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CJJRM1285_RS05935	COG2217	Heavy metal translocating P-type atpase
CJJRM1285_RS05940	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CJJRM1285_RS05945	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CJJRM1285_RS05955	COG2217	Heavy metal translocating P-type atpase
CJJRM1285_RS05975	COG3610	response to peptide
CJJRM1285_RS05985	COG0039	L-malate dehydrogenase activity
CJJRM1285_RS05990	COG0586	Pfam SNARE associated Golgi protein
CJJRM1285_RS06005	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CJJRM1285_RS06025	COG0018	arginyl-trna synthetase
CJJRM1285_RS06030	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CJJRM1285_RS06035	COG0194	GDP metabolic process
CJJRM1285_RS06045	COG1684	flagellar biosynthetic protein fliR
CJJRM1285_RS06055	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CJJRM1285_RS06060	COG0052	Belongs to the universal ribosomal protein uS2 family
CJJRM1285_RS06065	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJJRM1285_RS06075	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CJJRM1285_RS06080	COG0723	plastoquinol--plastocyanin reductase activity
CJJRM1285_RS06085	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CJJRM1285_RS06090	COG0445	tRNA wobble uridine modification
CJJRM1285_RS06110	COG1301	dicarboxylic acid transport
CJJRM1285_RS06125	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CJJRM1285_RS06130	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CJJRM1285_RS06135	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CJJRM1285_RS06140	COG1854	S-ribosylhomocysteine lyase activity
CJJRM1285_RS06160	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CJJRM1285_RS06170	COG0356	it plays a direct role in the translocation of protons across the membrane
CJJRM1285_RS06175	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CJJRM1285_RS06180	COG0552	protein localization to endoplasmic reticulum
CJJRM1285_RS06195	COG1418	mRNA catabolic process
CJJRM1285_RS06210	COG1295	ribonuclease BN
CJJRM1285_RS06215	COG0277	FAD linked oxidase domain protein
CJJRM1285_RS06225	COG0739	heme binding
CJJRM1285_RS06235	COG1496	oxidoreductase activity
CJJRM1285_RS06250	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CJJRM1285_RS06255	COG0459	protein refolding
CJJRM1285_RS06260	COG0642	Histidine kinase
CJJRM1285_RS06265	COG0745	RESPONSE REGULATOR receiver
CJJRM1285_RS06285	COG0642	Histidine kinase
CJJRM1285_RS06290	COG0745	RESPONSE REGULATOR receiver
CJJRM1285_RS06295	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJJRM1285_RS06300	COG0484	heat shock protein binding
CJJRM1285_RS06305	COG0789	Transcriptional regulator
CJJRM1285_RS06310	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJJRM1285_RS06310	COG0475	glutathione-regulated potassium exporter activity
CJJRM1285_RS06325	COG0751	glycine-tRNA ligase activity
CJJRM1285_RS06330	COG0739	heme binding
CJJRM1285_RS06340	COG0248	Ppx GppA phosphatase
CJJRM1285_RS06345	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CJJRM1285_RS06350	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CJJRM1285_RS06360	COG2814	Major facilitator Superfamily
CJJRM1285_RS06370	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CJJRM1285_RS06375	COG0731	radical SAM domain protein
CJJRM1285_RS06385	COG0322	excinuclease ABC activity
CJJRM1285_RS06395	COG0519	Catalyzes the synthesis of GMP from XMP
CJJRM1285_RS06395	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CJJRM1285_RS06420	COG1185	polyribonucleotide nucleotidyltransferase activity
CJJRM1285_RS06430	COG1942	4-Oxalocrotonate Tautomerase
CJJRM1285_RS06445	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CJJRM1285_RS06450	COG4773	Receptor
CJJRM1285_RS06455	COG0484	heat shock protein binding
CJJRM1285_RS06460	COG0745	RESPONSE REGULATOR receiver
CJJRM1285_RS06465	COG0642	Histidine kinase
CJJRM1285_RS06475	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CJJRM1285_RS06480	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CJJRM1285_RS06485	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CJJRM1285_RS06490	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CJJRM1285_RS06495	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJJRM1285_RS06495	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CJJRM1285_RS06510	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CJJRM1285_RS06515	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CJJRM1285_RS06520	COG1758	RNA polymerase activity
CJJRM1285_RS06525	COG0528	UMP kinase activity
CJJRM1285_RS06540	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CJJRM1285_RS06545	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CJJRM1285_RS06555	COG0564	pseudouridine synthase activity
CJJRM1285_RS06560	COG0772	Belongs to the SEDS family
CJJRM1285_RS06575	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CJJRM1285_RS06580	COG0569	domain protein
CJJRM1285_RS06585	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
CJJRM1285_RS06590	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CJJRM1285_RS06595	COG0281	malic enzyme
CJJRM1285_RS06595	COG0280	phosphate acetyltransferase
CJJRM1285_RS06600	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJJRM1285_RS06610	COG0439	Biotin carboxylase
CJJRM1285_RS06615	COG0511	ligase activity, forming carbon-carbon bonds
CJJRM1285_RS06625	COG1086	Polysaccharide biosynthesis protein
CJJRM1285_RS06630	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJJRM1285_RS06635	COG4310	Domain of unknown function (DUF2172)
CJJRM1285_RS06670	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CJJRM1285_RS06710	COG1083	cytidylyl-transferase
CJJRM1285_RS06715	COG3980	spore coat polysaccharide biosynthesis protein
CJJRM1285_RS06720	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CJJRM1285_RS06725	COG0107	imidazoleglycerol-phosphate synthase activity
CJJRM1285_RS06730	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CJJRM1285_RS06740	COG2089	acid synthase
CJJRM1285_RS06780	COG2165	general secretion pathway protein
CJJRM1285_RS06785	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CJJRM1285_RS06795	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CJJRM1285_RS06800	COG0575	Belongs to the CDS family
CJJRM1285_RS06810	COG1293	RNA-binding protein homologous to eukaryotic snRNP
CJJRM1285_RS06815	COG0746	molybdenum cofactor guanylyltransferase activity
CJJRM1285_RS06820	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
CJJRM1285_RS06825	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJJRM1285_RS06830	COG4605	iron ion homeostasis
CJJRM1285_RS06835	COG4604	ABC transporter, ATP-binding protein
CJJRM1285_RS06840	COG4607	ABC-type enterochelin transport system periplasmic component
CJJRM1285_RS06865	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
CJJRM1285_RS06870	COG3005	denitrification pathway
CJJRM1285_RS06875	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CJJRM1285_RS06890	COG2255	four-way junction helicase activity
CJJRM1285_RS06895	COG0628	permease
CJJRM1285_RS06900	COG0114	fumarate hydratase activity
CJJRM1285_RS06910	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CJJRM1285_RS06920	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CJJRM1285_RS06930	COG2252	PERMEase
CJJRM1285_RS06940	COG2853	Lipoprotein
CJJRM1285_RS06955	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CJJRM1285_RS06960	COG2814	Major facilitator Superfamily
CJJRM1285_RS06975	COG1921	L-seryl-tRNASec selenium transferase activity
CJJRM1285_RS06980	COG3276	selenocysteine insertion sequence binding
CJJRM1285_RS06995	COG0716	FMN binding
CJJRM1285_RS07010	COG0753	catalase activity
CJJRM1285_RS07020	COG2964	Protein conserved in bacteria
CJJRM1285_RS07025	COG0251	oxidation-reduction process
CJJRM1285_RS07030	COG3069	C4-dicarboxylate transmembrane transporter activity
CJJRM1285_RS07050	COG1918	ferrous iron import across plasma membrane
CJJRM1285_RS07055	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CJJRM1285_RS07060	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CJJRM1285_RS07065	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CJJRM1285_RS07070	COG0149	triose-phosphate isomerase activity
CJJRM1285_RS07075	COG0126	phosphoglycerate kinase activity
CJJRM1285_RS07080	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CJJRM1285_RS07105	COG1580	Controls the rotational direction of flagella during chemotaxis
CJJRM1285_RS07120	COG2124	cytochrome p450
CJJRM1285_RS07140	COG0529	Catalyzes the synthesis of activated sulfate
CJJRM1285_RS07145	COG1213	nucleotidyl transferase
CJJRM1285_RS07150	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CJJRM1285_RS07155	COG0574	Belongs to the PEP-utilizing enzyme family
CJJRM1285_RS07155	COG3848	Pyruvate phosphate dikinase
CJJRM1285_RS07160	COG2226	methyltransferase
CJJRM1285_RS07175	COG1442	glycosyl transferase family 8
CJJRM1285_RS07175	COG1216	Glycosyl transferase, family 2
CJJRM1285_RS07185	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJJRM1285_RS07190	COG1442	glycosyl transferase family 8
CJJRM1285_RS07190	COG1216	Glycosyl transferase, family 2
CJJRM1285_RS07200	COG3562	capsule polysaccharide
CJJRM1285_RS07205	COG0517	IMP dehydrogenase activity
CJJRM1285_RS07205	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CJJRM1285_RS07260	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CJJRM1285_RS07270	COG0175	sulfate reduction
CJJRM1285_RS07275	COG2895	sulfate adenylyltransferase (ATP) activity
CJJRM1285_RS07280	COG0471	metal ion transport
CJJRM1285_RS07280	COG3273	potassium ion transport
CJJRM1285_RS07285	COG0529	Catalyzes the synthesis of activated sulfate
CJJRM1285_RS07295	COG1442	glycosyl transferase family 8
CJJRM1285_RS07295	COG1216	Glycosyl transferase, family 2
CJJRM1285_RS07310	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CJJRM1285_RS07340	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CJJRM1285_RS07375	COG3951	Flagellar rod assembly protein muramidase FlgJ
CJJRM1285_RS07400	COG0730	response to heat
CJJRM1285_RS07405	COG1459	type II secretion system
CJJRM1285_RS07410	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CJJRM1285_RS07440	COG0546	phosphoglycolate phosphatase activity
CJJRM1285_RS07450	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CJJRM1285_RS07455	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CJJRM1285_RS07460	COG0210	DNA helicase
CJJRM1285_RS07465	COG2887	Belongs to the helicase family. UvrD subfamily
CJJRM1285_RS07510	COG0745	RESPONSE REGULATOR receiver
CJJRM1285_RS07525	COG0505	Belongs to the CarA family
CJJRM1285_RS07545	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CJJRM1285_RS07560	COG0425	Belongs to the sulfur carrier protein TusA family
CJJRM1285_RS07565	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CJJRM1285_RS07575	COG0709	Synthesizes selenophosphate from selenide and ATP
CJJRM1285_RS07595	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CJJRM1285_RS07605	COG0437	4 iron, 4 sulfur cluster binding
CJJRM1285_RS07615	COG3383	formate dehydrogenase (NAD+) activity
CJJRM1285_RS07645	COG0314	molybdopterin synthase activity
CJJRM1285_RS07655	COG0303	'Molybdopterin
CJJRM1285_RS07660	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CJJRM1285_RS07670	COG3513	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
CJJRM1285_RS07675	COG3069	C4-dicarboxylate transmembrane transporter activity
CJJRM1285_RS07680	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CJJRM1285_RS07690	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CJJRM1285_RS07695	COG2992	FlgJ-related protein
CJJRM1285_RS07705	COG0783	Belongs to the Dps family
CJJRM1285_RS07710	COG0166	Belongs to the GPI family
CJJRM1285_RS07720	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJJRM1285_RS07725	COG3839	Belongs to the ABC transporter superfamily
CJJRM1285_RS07730	COG4662	Binding-protein-dependent transport system inner membrane component
CJJRM1285_RS07735	COG2998	abc-type tungstate transport system, permease component
CJJRM1285_RS07740	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CJJRM1285_RS07745	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CJJRM1285_RS07750	COG1984	allophanate hydrolase subunit 2
CJJRM1285_RS07760	COG2249	NAD(P)H dehydrogenase (quinone) activity
CJJRM1285_RS07765	COG1733	regulation of RNA biosynthetic process
CJJRM1285_RS07775	COG1064	alcohol dehydrogenase
CJJRM1285_RS07795	COG3177	Filamentation induced by cAMP protein fic
CJJRM1285_RS07815	COG2814	Major facilitator Superfamily
CJJRM1285_RS07820	COG0640	Transcriptional regulator
CJJRM1285_RS07845	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJJRM1285_RS07850	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CJJRM1285_RS07860	COG0839	Belongs to the complex I subunit 6 family
CJJRM1285_RS07895	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJJRM1285_RS07900	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJJRM1285_RS07905	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJJRM1285_RS07920	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJJRM1285_RS07925	COG0601	transmembrane transport
CJJRM1285_RS07960	COG4615	Cyclic peptide transporter
CJJRM1285_RS07975	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CJJRM1285_RS07980	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CJJRM1285_RS07985	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CJJRM1285_RS07990	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CJJRM1285_RS07995	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CJJRM1285_RS08000	COG0202	RNA polymerase activity
CJJRM1285_RS08005	COG0203	ribosomal protein L17
CJJRM1285_RS08010	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CJJRM1285_RS08020	COG0131	Imidazoleglycerol-phosphate dehydratase
CJJRM1285_RS08020	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CJJRM1285_RS08030	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CJJRM1285_RS08045	COG0140	phosphoribosyl-ATP diphosphatase activity
CJJRM1285_RS08045	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CJJRM1285_RS08050	COG2171	N-acyltransferase activity
CJJRM1285_RS08055	COG0489	protein tyrosine kinase activity
CJJRM1285_RS08060	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CJJRM1285_RS08060	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CJJRM1285_RS08065	COG0745	RESPONSE REGULATOR receiver
CJJRM1285_RS08070	COG2046	Belongs to the sulfate adenylyltransferase family
CJJRM1285_RS08075	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CJJRM1285_RS08080	COG0268	Binds directly to 16S ribosomal RNA
CJJRM1285_RS08085	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CJJRM1285_RS08090	COG0748	coenzyme F420 binding
CJJRM1285_RS08095	COG4771	TonB-dependent receptor
CJJRM1285_RS08100	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJJRM1285_RS08105	COG1120	ATPase activity
CJJRM1285_RS08110	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CJJRM1285_RS08120	COG0477	Major facilitator Superfamily
CJJRM1285_RS08125	COG1194	a g-specific adenine glycosylase
CJJRM1285_RS08155	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJJRM1285_RS08155	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJJRM1285_RS08165	COG1760	l-serine dehydratase
CJJRM1285_RS08170	COG0814	amino acid
CJJRM1285_RS08185	COG0811	peptide transport
CJJRM1285_RS08190	COG0848	biopolymer transport protein
CJJRM1285_RS08215	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CJJRM1285_RS08225	COG0328	RNA-DNA hybrid ribonuclease activity
CJJRM1285_RS08235	COG0358	DNA primase activity
CJJRM1285_RS08250	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CJJRM1285_RS08255	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CJJRM1285_RS08270	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CJJRM1285_RS08275	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CJJRM1285_RS08280	COG1127	ABC transporter
CJJRM1285_RS08290	COG3218	ABC-type transport auxiliary lipoprotein component
CJJRM1285_RS08290	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CJJRM1285_RS08300	COG0024	Methionine aminopeptidase
CJJRM1285_RS08305	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CJJRM1285_RS08310	COG0791	NLP P60 protein
CJJRM1285_RS08320	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CJJRM1285_RS08335	COG0672	)-iron permease
CJJRM1285_RS08360	COG1136	(ABC) transporter
CJJRM1285_RS08415	COG1793	dna ligase
CJJRM1285_RS08430	COG0148	phosphopyruvate hydratase activity
CJJRM1285_RS08435	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CJJRM1285_RS08440	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
CJJRM1285_RS08445	COG1987	bacterial-type flagellum assembly
CJJRM1285_RS08460	COG1218	3'(2'),5'-bisphosphate nucleotidase
CJJRM1285_RS08465	COG0372	Belongs to the citrate synthase family
CJJRM1285_RS08475	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJJRM1285_RS08480	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CJJRM1285_RS08490	COG2936	dipeptidyl-peptidase activity
CJJRM1285_RS08500	COG0201	protein transport
CJJRM1285_RS08505	COG0200	Binds to the 23S rRNA
CJJRM1285_RS08510	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CJJRM1285_RS08515	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CJJRM1285_RS08520	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CJJRM1285_RS08525	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CJJRM1285_RS08530	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CJJRM1285_RS08535	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CJJRM1285_RS08540	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CJJRM1285_RS08545	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CJJRM1285_RS08550	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CJJRM1285_RS08555	COG0255	Belongs to the universal ribosomal protein uL29 family
CJJRM1285_RS08560	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CJJRM1285_RS08565	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CJJRM1285_RS08570	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CJJRM1285_RS08575	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CJJRM1285_RS08585	COG0089	rRNA binding
CJJRM1285_RS08590	COG0088	Forms part of the polypeptide exit tunnel
CJJRM1285_RS08595	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CJJRM1285_RS08600	COG0051	transcription antitermination factor activity, RNA binding
CJJRM1285_RS08605	COG1187	pseudouridine synthase activity
CJJRM1285_RS08610	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CJJRM1285_RS08625	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CJJRM1285_RS08670	COG0473	3-isopropylmalate dehydrogenase activity
CJJRM1285_RS08675	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CJJRM1285_RS08715	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CJJRM1285_RS08725	COG1749	Flagellar hook protein flgE