locus-tag class description CLAN_RS00005 PF00308 Bacterial dnaA protein CLAN_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CLAN_RS00005 PF11638 DnaA N-terminal domain CLAN_RS00010 PF02767 DNA polymerase III beta subunit, central domain CLAN_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CLAN_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CLAN_RS00015 PF01751 Toprim domain CLAN_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLAN_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CLAN_RS00015 PF00204 DNA gyrase B CLAN_RS00020 PF14489 QueF-like protein CLAN_RS00040 PF00551 Formyl transferase CLAN_RS00040 PF02911 Formyl transferase, C-terminal domain CLAN_RS00045 PF01261 Xylose isomerase-like TIM barrel CLAN_RS00065 PF13847 Methyltransferase domain CLAN_RS00065 PF10119 Predicted methyltransferase regulatory domain CLAN_RS00070 PF02754 Cysteine-rich domain CLAN_RS00070 PF13183 4Fe-4S dicluster domain CLAN_RS00070 PF02665 Nitrate reductase gamma subunit CLAN_RS00075 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLAN_RS00075 PF03807 NADP oxidoreductase coenzyme F420-dependent CLAN_RS00085 PF06969 HemN C-terminal domain CLAN_RS00085 PF04055 Radical SAM superfamily CLAN_RS00090 PF10788 Protein of unknown function (DUF2603) CLAN_RS00095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLAN_RS00095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLAN_RS00100 PF00490 Delta-aminolevulinic acid dehydratase CLAN_RS00105 PF00925 GTP cyclohydrolase II CLAN_RS00110 PF02527 rRNA small subunit methyltransferase G CLAN_RS00125 PF01435 Peptidase family M48 CLAN_RS00135 PF03605 Anaerobic c4-dicarboxylate membrane transporter CLAN_RS00140 PF05992 SbmA/BacA-like family CLAN_RS00145 PF01632 Ribosomal protein L35 CLAN_RS00150 PF00453 Ribosomal protein L20 CLAN_RS00155 PF03167 Uracil DNA glycosylase superfamily CLAN_RS00160 PF02769 AIR synthase related protein, C-terminal domain CLAN_RS00160 PF00586 AIR synthase related protein, N-terminal domain CLAN_RS00170 PF01042 Endoribonuclease L-PSP CLAN_RS00175 PF01121 Dephospho-CoA kinase CLAN_RS00180 PF00535 Glycosyl transferase family 2 CLAN_RS00185 PF00534 Glycosyl transferases group 1 CLAN_RS00190 PF00669 Bacterial flagellin N-terminal helical region CLAN_RS00190 PF07196 Flagellin hook IN motif CLAN_RS00190 PF00700 Bacterial flagellin C-terminal helical region CLAN_RS00195 PF00266 Aminotransferase class-V CLAN_RS00200 PF04324 BFD-like [2Fe-2S] binding domain CLAN_RS00200 PF01106 NifU-like domain CLAN_RS00200 PF01592 NifU-like N terminal domain CLAN_RS00215 PF05198 Translation initiation factor IF-3, N-terminal domain CLAN_RS00215 PF00707 Translation initiation factor IF-3, C-terminal domain CLAN_RS00220 PF03129 Anticodon binding domain CLAN_RS00220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLAN_RS00220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLAN_RS00225 PF00459 Inositol monophosphatase family CLAN_RS00230 PF00285 Citrate synthase, C-terminal domain CLAN_RS00235 PF02254 TrkA-N domain CLAN_RS00235 PF02080 TrkA-C domain CLAN_RS00235 PF00999 Sodium/hydrogen exchanger family CLAN_RS00240 PF04055 Radical SAM superfamily CLAN_RS00240 PF06968 Biotin and Thiamin Synthesis associated domain CLAN_RS00245 PF01396 Topoisomerase DNA binding C4 zinc finger CLAN_RS00245 PF01131 DNA topoisomerase CLAN_RS00245 PF01751 Toprim domain CLAN_RS00250 PF00361 Proton-conducting membrane transporter CLAN_RS00255 PF00361 Proton-conducting membrane transporter CLAN_RS00260 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CLAN_RS00260 PF00361 Proton-conducting membrane transporter CLAN_RS00265 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CLAN_RS00270 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CLAN_RS00275 PF12838 4Fe-4S dicluster domain CLAN_RS00280 PF00146 NADH dehydrogenase CLAN_RS00285 PF00384 Molybdopterin oxidoreductase CLAN_RS00285 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLAN_RS00285 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CLAN_RS00290 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLAN_RS00290 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLAN_RS00290 PF10531 SLBB domain CLAN_RS00300 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CLAN_RS00300 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CLAN_RS00305 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CLAN_RS00310 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CLAN_RS00315 PF13722 5TM C-terminal transporter carbon starvation CstA CLAN_RS00315 PF02554 Carbon starvation protein CstA CLAN_RS00320 PF04328 Selenoprotein, putative CLAN_RS00325 PF00672 HAMP domain CLAN_RS00325 PF02743 Cache domain CLAN_RS00325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLAN_RS00370 PF03453 MoeA N-terminal region (domain I and II) CLAN_RS00370 PF03454 MoeA C-terminal region (domain IV) CLAN_RS00370 PF00994 Probable molybdopterin binding domain CLAN_RS00375 PF07690 Major Facilitator Superfamily CLAN_RS00380 PF12849 PBP superfamily domain CLAN_RS00385 PF00528 Binding-protein-dependent transport system inner membrane component CLAN_RS00390 PF00528 Binding-protein-dependent transport system inner membrane component CLAN_RS00395 PF00005 ABC transporter CLAN_RS00400 PF00072 Response regulator receiver domain CLAN_RS00400 PF00486 Transcriptional regulatory protein, C terminal CLAN_RS00405 PF00989 PAS fold CLAN_RS00405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLAN_RS00405 PF18698 Histidine kinase sensor domain CLAN_RS00405 PF00512 His Kinase A (phospho-acceptor) domain CLAN_RS00405 PF00672 HAMP domain CLAN_RS00410 PF00154 recA bacterial DNA recombination protein CLAN_RS00415 PF03952 Enolase, N-terminal domain CLAN_RS00415 PF00113 Enolase, C-terminal TIM barrel domain CLAN_RS00430 PF01351 Ribonuclease HII CLAN_RS00450 PF00005 ABC transporter CLAN_RS00465 PF01891 Cobalt uptake substrate-specific transmembrane region CLAN_RS00475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLAN_RS00475 PF18269 T3SS EscN ATPase C-terminal domain CLAN_RS00480 PF01227 GTP cyclohydrolase I CLAN_RS00485 PF05698 Bacterial trigger factor protein (TF) C-terminus CLAN_RS00485 PF05697 Bacterial trigger factor protein (TF) CLAN_RS00485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLAN_RS00490 PF00574 Clp protease CLAN_RS00500 PF01327 Polypeptide deformylase CLAN_RS00505 PF13335 Magnesium chelatase, subunit ChlI C-terminal CLAN_RS00505 PF01078 Magnesium chelatase, subunit ChlI CLAN_RS00510 PF01256 Carbohydrate kinase CLAN_RS00510 PF03853 YjeF-related protein N-terminus CLAN_RS00515 PF00551 Formyl transferase CLAN_RS00520 PF03741 Integral membrane protein TerC family CLAN_RS00550 PF00194 Eukaryotic-type carbonic anhydrase CLAN_RS00555 PF12161 HsdM N-terminal domain CLAN_RS00555 PF02384 N-6 DNA Methylase CLAN_RS00560 PF01420 Type I restriction modification DNA specificity domain CLAN_RS00570 PF12008 Type I restriction and modification enzyme - subunit R C terminal CLAN_RS00570 PF18766 SWI2/SNF2 ATPase CLAN_RS00570 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLAN_RS00575 PF00080 Copper/zinc superoxide dismutase (SODC) CLAN_RS00585 PF03372 Endonuclease/Exonuclease/phosphatase family CLAN_RS00590 PF03498 Cytolethal distending toxin A/C domain CLAN_RS00605 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CLAN_RS00615 PF01467 Cytidylyltransferase-like CLAN_RS00620 PF01501 Glycosyl transferase family 8 CLAN_RS00620 PF00535 Glycosyl transferase family 2 CLAN_RS00630 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLAN_RS00635 PF01370 NAD dependent epimerase/dehydratase family CLAN_RS00640 PF01501 Glycosyl transferase family 8 CLAN_RS00640 PF00535 Glycosyl transferase family 2 CLAN_RS00660 PF13018 Extended Signal Peptide of Type V secretion system CLAN_RS00660 PF03797 Autotransporter beta-domain CLAN_RS00660 PF02395 Immunoglobulin A1 protease CLAN_RS00665 PF01027 Inhibitor of apoptosis-promoting Bax1 CLAN_RS00670 PF03840 Preprotein translocase SecG subunit CLAN_RS00675 PF01765 Ribosome recycling factor CLAN_RS00680 PF00156 Phosphoribosyl transferase domain CLAN_RS00690 PF08534 Redoxin CLAN_RS00695 PF01661 Macro domain CLAN_RS00695 PF16193 AAA C-terminal domain CLAN_RS00695 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLAN_RS00695 PF12002 MgsA AAA+ ATPase C terminal CLAN_RS00705 PF00067 Cytochrome P450 CLAN_RS00715 PF10531 SLBB domain CLAN_RS00715 PF02563 Polysaccharide biosynthesis/export protein CLAN_RS00725 PF13419 Haloacid dehalogenase-like hydrolase CLAN_RS00730 PF14602 Hexapeptide repeat of succinyl-transferase CLAN_RS00730 PF00132 Bacterial transferase hexapeptide (six repeats) CLAN_RS00730 PF00483 Nucleotidyl transferase CLAN_RS00750 PF00483 Nucleotidyl transferase CLAN_RS00765 PF03498 Cytolethal distending toxin A/C domain CLAN_RS00770 PF03372 Endonuclease/Exonuclease/phosphatase family CLAN_RS00780 PF00483 Nucleotidyl transferase CLAN_RS00785 PF13580 SIS domain CLAN_RS00790 PF00288 GHMP kinases N terminal domain CLAN_RS00790 PF08544 GHMP kinases C terminal CLAN_RS00795 PF01370 NAD dependent epimerase/dehydratase family CLAN_RS00800 PF16363 GDP-mannose 4,6 dehydratase CLAN_RS00810 PF01370 NAD dependent epimerase/dehydratase family CLAN_RS00820 PF01370 NAD dependent epimerase/dehydratase family CLAN_RS00825 PF01370 NAD dependent epimerase/dehydratase family CLAN_RS00830 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CLAN_RS00835 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLAN_RS00845 PF05159 Capsule polysaccharide biosynthesis protein CLAN_RS00850 PF05159 Capsule polysaccharide biosynthesis protein CLAN_RS00860 PF00005 ABC transporter CLAN_RS00885 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLAN_RS00885 PF14572 Phosphoribosyl synthetase-associated domain CLAN_RS00890 PF00403 Heavy-metal-associated domain CLAN_RS00905 PF08645 Polynucleotide kinase 3 phosphatase CLAN_RS00910 PF01370 NAD dependent epimerase/dehydratase family CLAN_RS00915 PF01467 Cytidylyltransferase-like CLAN_RS00915 PF00294 pfkB family carbohydrate kinase CLAN_RS00920 PF13580 SIS domain CLAN_RS00925 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CLAN_RS00935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CLAN_RS00940 PF03279 Bacterial lipid A biosynthesis acyltransferase CLAN_RS00965 PF13302 Acetyltransferase (GNAT) domain CLAN_RS00970 PF16363 GDP-mannose 4,6 dehydratase CLAN_RS00975 PF01063 Amino-transferase class IV CLAN_RS00985 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CLAN_RS00985 PF01502 Phosphoribosyl-AMP cyclohydrolase CLAN_RS01010 PF00578 AhpC/TSA family CLAN_RS01015 PF02677 Epoxyqueuosine reductase QueH CLAN_RS01020 PF07977 FabA-like domain CLAN_RS01025 PF00132 Bacterial transferase hexapeptide (six repeats) CLAN_RS01025 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CLAN_RS01030 PF10431 C-terminal, D2-small domain, of ClpB protein CLAN_RS01030 PF06689 ClpX C4-type zinc finger CLAN_RS01030 PF07724 AAA domain (Cdc48 subfamily) CLAN_RS01045 PF02142 MGS-like domain CLAN_RS01045 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLAN_RS01045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLAN_RS01055 PF02911 Formyl transferase, C-terminal domain CLAN_RS01055 PF00551 Formyl transferase CLAN_RS01070 PF13193 AMP-binding enzyme C-terminal domain CLAN_RS01070 PF00501 AMP-binding enzyme CLAN_RS01075 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLAN_RS01075 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLAN_RS01100 PF01975 Survival protein SurE CLAN_RS01105 PF02684 Lipid-A-disaccharide synthetase CLAN_RS01110 PF01272 Transcription elongation factor, GreA/GreB, C-term CLAN_RS01110 PF03449 Transcription elongation factor, N-terminal CLAN_RS01115 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLAN_RS01115 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLAN_RS01125 PF01584 CheW-like domain CLAN_RS01125 PF00072 Response regulator receiver domain CLAN_RS01130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLAN_RS01130 PF02895 Signal transducing histidine kinase, homodimeric domain CLAN_RS01130 PF01584 CheW-like domain CLAN_RS01130 PF01627 Hpt domain CLAN_RS01130 PF00072 Response regulator receiver domain CLAN_RS01135 PF01584 CheW-like domain CLAN_RS01145 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLAN_RS01150 PF14693 Ribosomal protein TL5, C-terminal domain CLAN_RS01150 PF01386 Ribosomal L25p family CLAN_RS01155 PF01195 Peptidyl-tRNA hydrolase CLAN_RS01160 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLAN_RS01165 PF01312 FlhB HrpN YscU SpaS Family CLAN_RS01175 PF01979 Amidohydrolase family CLAN_RS01180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLAN_RS01180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLAN_RS01200 PF00121 Triosephosphate isomerase CLAN_RS01205 PF00162 Phosphoglycerate kinase CLAN_RS01210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLAN_RS01210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLAN_RS01215 PF01467 Cytidylyltransferase-like CLAN_RS01225 PF03485 Arginyl tRNA synthetase N terminal domain CLAN_RS01225 PF05746 DALR anticodon binding domain CLAN_RS01225 PF00750 tRNA synthetases class I (R) CLAN_RS01230 PF02416 mttA/Hcf106 family CLAN_RS01235 PF00625 Guanylate kinase CLAN_RS01245 PF01311 Bacterial export proteins, family 1 CLAN_RS01255 PF09335 SNARE associated Golgi protein CLAN_RS01260 PF01725 Ham1 family CLAN_RS01270 PF03544 Gram-negative bacterial TonB protein C-terminal CLAN_RS01275 PF16653 Saccharopine dehydrogenase C-terminal domain CLAN_RS01275 PF03435 Saccharopine dehydrogenase NADP binding domain CLAN_RS01280 PF01197 Ribosomal protein L31 CLAN_RS01285 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLAN_RS01290 PF00588 SpoU rRNA Methylase family CLAN_RS01290 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLAN_RS01305 PF00155 Aminotransferase class I and II CLAN_RS01310 PF03447 Homoserine dehydrogenase, NAD binding domain CLAN_RS01310 PF01842 ACT domain CLAN_RS01310 PF00742 Homoserine dehydrogenase CLAN_RS01315 PF02021 Uncharacterised protein family UPF0102 CLAN_RS01320 PF00085 Thioredoxin CLAN_RS01325 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLAN_RS01330 PF13458 Periplasmic binding protein CLAN_RS01350 PF01867 CRISPR associated protein Cas1 CLAN_RS01355 PF09827 CRISPR associated protein Cas2 CLAN_RS01380 PF00005 ABC transporter CLAN_RS01385 PF00889 Elongation factor TS CLAN_RS01390 PF00318 Ribosomal protein S2 CLAN_RS01400 PF02578 Multi-copper polyphenol oxidoreductase laccase CLAN_RS01405 PF00677 Lumazine binding domain CLAN_RS01410 PF13932 GidA associated domain CLAN_RS01410 PF01134 Glucose inhibited division protein A CLAN_RS01415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CLAN_RS01415 PF00355 Rieske [2Fe-2S] domain CLAN_RS01420 PF00032 Cytochrome b(C-terminal)/b6/petD CLAN_RS01420 PF00033 Cytochrome b/b6/petB CLAN_RS01445 PF00155 Aminotransferase class I and II CLAN_RS01450 PF04301 Protein of unknown function (DUF452) CLAN_RS01450 PF08241 Methyltransferase domain CLAN_RS01460 PF00202 Aminotransferase class-III CLAN_RS01475 PF07282 Putative transposase DNA-binding domain CLAN_RS01475 PF01385 Probable transposase CLAN_RS01475 PF12323 Helix-turn-helix domain CLAN_RS01480 PF09278 MerR, DNA binding CLAN_RS01480 PF00376 MerR family regulatory protein CLAN_RS01495 PF00679 Elongation factor G C-terminus CLAN_RS01495 PF14492 Elongation Factor G, domain II CLAN_RS01495 PF03764 Elongation factor G, domain IV CLAN_RS01495 PF00009 Elongation factor Tu GTP binding domain CLAN_RS01520 PF00501 AMP-binding enzyme CLAN_RS01520 PF13193 AMP-binding enzyme C-terminal domain CLAN_RS01545 PF01219 Prokaryotic diacylglycerol kinase CLAN_RS01555 PF00145 C-5 cytosine-specific DNA methylase CLAN_RS01560 PF01554 MatE CLAN_RS01570 PF02335 Cytochrome c552 CLAN_RS01575 PF01420 Type I restriction modification DNA specificity domain CLAN_RS01580 PF01420 Type I restriction modification DNA specificity domain CLAN_RS01590 PF01380 SIS domain CLAN_RS01605 PF01177 Asp/Glu/Hydantoin racemase CLAN_RS01610 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CLAN_RS01640 PF01810 LysE type translocator CLAN_RS01665 PF01207 Dihydrouridine synthase (Dus) CLAN_RS01675 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLAN_RS01680 PF02590 Predicted SPOUT methyltransferase CLAN_RS01685 PF01039 Carboxyl transferase domain CLAN_RS01685 PF17848 Acetyl-coA carboxylase zinc finger domain CLAN_RS01690 PF10417 C-terminal domain of 1-Cys peroxiredoxin CLAN_RS01690 PF00578 AhpC/TSA family CLAN_RS01700 PF00266 Aminotransferase class-V CLAN_RS01705 PF13742 OB-fold nucleic acid binding domain CLAN_RS01705 PF02601 Exonuclease VII, large subunit CLAN_RS01710 PF01209 ubiE/COQ5 methyltransferase family CLAN_RS01720 PF01475 Ferric uptake regulator family CLAN_RS01725 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLAN_RS01725 PF02779 Transketolase, pyrimidine binding domain CLAN_RS01725 PF02780 Transketolase, C-terminal domain CLAN_RS01735 PF14842 FliG N-terminal domain CLAN_RS01735 PF14841 FliG middle domain CLAN_RS01735 PF01706 FliG C-terminal domain CLAN_RS01740 PF01514 Secretory protein of YscJ/FliF family CLAN_RS01740 PF08345 Flagellar M-ring protein C-terminal CLAN_RS01745 PF00155 Aminotransferase class I and II CLAN_RS01750 PF01817 Chorismate mutase type II CLAN_RS01750 PF00800 Prephenate dehydratase CLAN_RS01750 PF01842 ACT domain CLAN_RS01760 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLAN_RS01760 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLAN_RS01765 PF01943 Polysaccharide biosynthesis protein CLAN_RS01765 PF14667 Polysaccharide biosynthesis C-terminal domain CLAN_RS01770 PF13439 Glycosyltransferase Family 4 CLAN_RS01770 PF00534 Glycosyl transferases group 1 CLAN_RS01775 PF13439 Glycosyltransferase Family 4 CLAN_RS01775 PF00534 Glycosyl transferases group 1 CLAN_RS01780 PF00534 Glycosyl transferases group 1 CLAN_RS01780 PF13439 Glycosyltransferase Family 4 CLAN_RS01785 PF02516 Oligosaccharyl transferase STT3 subunit CLAN_RS01785 PF18527 STT3/PglB C-terminal beta-barrel domain CLAN_RS01790 PF00534 Glycosyl transferases group 1 CLAN_RS01790 PF13477 Glycosyl transferase 4-like CLAN_RS01795 PF02397 Bacterial sugar transferase CLAN_RS01810 PF00521 DNA gyrase/topoisomerase IV, subunit A CLAN_RS01810 PF03989 DNA gyrase C-terminal domain, beta-propeller CLAN_RS01825 PF00158 Sigma-54 interaction domain CLAN_RS01825 PF00072 Response regulator receiver domain CLAN_RS01830 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLAN_RS01830 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLAN_RS01840 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLAN_RS01845 PF04055 Radical SAM superfamily CLAN_RS01855 PF00132 Bacterial transferase hexapeptide (six repeats) CLAN_RS01860 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CLAN_RS01860 PF00270 DEAD/DEAH box helicase CLAN_RS01860 PF00271 Helicase conserved C-terminal domain CLAN_RS01860 PF17764 3′ DNA-binding domain (3′BD) CLAN_RS01860 PF18074 Primosomal protein N C-terminal domain CLAN_RS01880 PF00271 Helicase conserved C-terminal domain CLAN_RS01880 PF04851 Type III restriction enzyme, res subunit CLAN_RS01880 PF02151 UvrB/uvrC motif CLAN_RS01880 PF12344 Ultra-violet resistance protein B CLAN_RS01880 PF17757 UvrB interaction domain CLAN_RS01890 PF00871 Acetokinase family CLAN_RS01895 PF01515 Phosphate acetyl/butaryl transferase CLAN_RS01900 PF02107 Flagellar L-ring protein CLAN_RS01905 PF03631 Virulence factor BrkB CLAN_RS01910 PF01565 FAD binding domain CLAN_RS01910 PF02913 FAD linked oxidases, C-terminal domain CLAN_RS01920 PF01464 Transglycosylase SLT domain CLAN_RS01920 PF01551 Peptidase family M23 CLAN_RS01920 PF10145 Phage-related minor tail protein CLAN_RS01925 PF03448 MgtE intracellular N domain CLAN_RS01925 PF00571 CBS domain CLAN_RS01925 PF01769 Divalent cation transporter CLAN_RS01930 PF00293 NUDIX domain CLAN_RS01965 PF00072 Response regulator receiver domain CLAN_RS01970 PF01627 Hpt domain CLAN_RS01970 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLAN_RS01970 PF00072 Response regulator receiver domain CLAN_RS01970 PF00512 His Kinase A (phospho-acceptor) domain CLAN_RS01970 PF00672 HAMP domain CLAN_RS01970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLAN_RS01980 PF00468 Ribosomal protein L34 CLAN_RS01985 PF00825 Ribonuclease P CLAN_RS01990 PF01809 Putative membrane protein insertion efficiency factor CLAN_RS01995 PF14849 YidC periplasmic domain CLAN_RS01995 PF02096 60Kd inner membrane protein CLAN_RS02005 PF12631 MnmE helical domain CLAN_RS02005 PF01926 50S ribosome-binding GTPase CLAN_RS02005 PF10396 GTP-binding protein TrmE N-terminus CLAN_RS02010 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CLAN_RS02010 PF00586 AIR synthase related protein, N-terminal domain CLAN_RS02010 PF02769 AIR synthase related protein, C-terminal domain CLAN_RS02015 PF02142 MGS-like domain CLAN_RS02015 PF01808 AICARFT/IMPCHase bienzyme CLAN_RS02020 PF02743 Cache domain CLAN_RS02020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLAN_RS02020 PF00672 HAMP domain CLAN_RS02025 PF03061 Thioesterase superfamily CLAN_RS02030 PF02881 SRP54-type protein, helical bundle domain CLAN_RS02030 PF02978 Signal peptide binding domain CLAN_RS02030 PF00448 SRP54-type protein, GTPase domain CLAN_RS02035 PF00886 Ribosomal protein S16 CLAN_RS02045 PF01782 RimM N-terminal domain CLAN_RS02045 PF05239 PRC-barrel domain CLAN_RS02050 PF01746 tRNA (Guanine-1)-methyltransferase CLAN_RS02055 PF01245 Ribosomal protein L19 CLAN_RS02065 PF09375 Imelysin CLAN_RS02070 PF04261 Dyp-type peroxidase family CLAN_RS02070 PF10518 TAT (twin-arginine translocation) pathway signal sequence CLAN_RS02075 PF03239 Iron permease FTR1 family CLAN_RS02080 PF17092 Penicillin-binding protein OB-like domain CLAN_RS02080 PF00912 Transglycosylase CLAN_RS02080 PF00905 Penicillin binding protein transpeptidase domain CLAN_RS02085 PF02545 Maf-like protein CLAN_RS02095 PF01411 tRNA synthetases class II (A) CLAN_RS02095 PF02272 DHHA1 domain CLAN_RS02095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLAN_RS02100 PF03831 PhnA domain CLAN_RS02100 PF08274 PhnA Zinc-Ribbon CLAN_RS02105 PF02646 RmuC family CLAN_RS02110 PF06039 Malate:quinone oxidoreductase (Mqo) CLAN_RS02115 PF00391 PEP-utilising enzyme, mobile domain CLAN_RS02115 PF00224 Pyruvate kinase, barrel domain CLAN_RS02115 PF02887 Pyruvate kinase, alpha/beta domain CLAN_RS02120 PF05193 Peptidase M16 inactive domain CLAN_RS02125 PF04851 Type III restriction enzyme, res subunit CLAN_RS02125 PF00271 Helicase conserved C-terminal domain CLAN_RS02135 PF05860 haemagglutination activity domain CLAN_RS02135 PF13332 Hemagglutinin repeat CLAN_RS02135 PF05594 Haemagluttinin repeat CLAN_RS02135 PF13018 Extended Signal Peptide of Type V secretion system CLAN_RS02140 PF00166 Chaperonin 10 Kd subunit CLAN_RS02145 PF00118 TCP-1/cpn60 chaperonin family CLAN_RS02170 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLAN_RS02170 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLAN_RS02195 PF00501 AMP-binding enzyme CLAN_RS02195 PF13193 AMP-binding enzyme C-terminal domain CLAN_RS02200 PF04539 Sigma-70 region 3 CLAN_RS02200 PF04542 Sigma-70 region 2 CLAN_RS02200 PF00140 Sigma-70 factor, region 1.2 CLAN_RS02200 PF04545 Sigma-70, region 4 CLAN_RS02205 PF03972 MmgE/PrpD family CLAN_RS02210 PF00285 Citrate synthase, C-terminal domain CLAN_RS02220 PF13193 AMP-binding enzyme C-terminal domain CLAN_RS02220 PF00501 AMP-binding enzyme CLAN_RS02220 PF16177 Acetyl-coenzyme A synthetase N-terminus CLAN_RS02275 PF02661 Fic/DOC family CLAN_RS02275 PF12728 Helix-turn-helix domain CLAN_RS02280 PF08240 Alcohol dehydrogenase GroES-like domain CLAN_RS02280 PF00107 Zinc-binding dehydrogenase CLAN_RS02285 PF02525 Flavodoxin-like fold CLAN_RS02300 PF08275 DNA primase catalytic core, N-terminal domain CLAN_RS02300 PF01807 CHC2 zinc finger CLAN_RS02310 PF00075 RNase H CLAN_RS02315 PF00035 Double-stranded RNA binding motif CLAN_RS02315 PF14622 Ribonuclease-III-like CLAN_RS02320 PF01264 Chorismate synthase CLAN_RS02340 PF05538 Campylobacter major outer membrane protein CLAN_RS02345 PF02119 Flagellar P-ring protein CLAN_RS02365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLAN_RS02365 PF07196 Flagellin hook IN motif CLAN_RS02375 PF00171 Aldehyde dehydrogenase family CLAN_RS02385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLAN_RS02385 PF02403 Seryl-tRNA synthetase N-terminal domain CLAN_RS02390 PF00579 tRNA synthetases class I (W and Y) CLAN_RS02395 PF01202 Shikimate kinase CLAN_RS02400 PF01926 50S ribosome-binding GTPase CLAN_RS02400 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLAN_RS02420 PF02548 Ketopantoate hydroxymethyltransferase CLAN_RS02430 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLAN_RS02430 PF05491 RuvB C-terminal winged helix domain CLAN_RS02430 PF17864 RuvB AAA lid domain CLAN_RS02435 PF01594 AI-2E family transporter CLAN_RS02440 PF02405 Permease MlaE CLAN_RS02445 PF00005 ABC transporter CLAN_RS02475 PF01790 Prolipoprotein diacylglyceryl transferase CLAN_RS02485 PF00817 impB/mucB/samB family CLAN_RS02485 PF11798 IMS family HHH motif CLAN_RS02485 PF11799 impB/mucB/samB family C-terminal domain CLAN_RS02490 PF00403 Heavy-metal-associated domain CLAN_RS02500 PF01709 Transcriptional regulator CLAN_RS02505 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLAN_RS02510 PF13426 PAS domain CLAN_RS02510 PF08447 PAS fold CLAN_RS02510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLAN_RS02535 PF00009 Elongation factor Tu GTP binding domain CLAN_RS02535 PF03144 Elongation factor Tu domain 2 CLAN_RS02535 PF03143 Elongation factor Tu C-terminal domain CLAN_RS02540 PF00471 Ribosomal protein L33 CLAN_RS02555 PF02357 Transcription termination factor nusG CLAN_RS02560 PF00298 Ribosomal protein L11, RNA binding domain CLAN_RS02560 PF03946 Ribosomal protein L11, N-terminal domain CLAN_RS02565 PF00687 Ribosomal protein L1p/L10e family CLAN_RS02570 PF00466 Ribosomal protein L10 CLAN_RS02575 PF16320 Ribosomal protein L7/L12 dimerisation domain CLAN_RS02575 PF00542 Ribosomal protein L7/L12 C-terminal domain CLAN_RS02580 PF04565 RNA polymerase Rpb2, domain 3 CLAN_RS02580 PF04561 RNA polymerase Rpb2, domain 2 CLAN_RS02580 PF04563 RNA polymerase beta subunit CLAN_RS02580 PF10385 RNA polymerase beta subunit external 1 domain CLAN_RS02580 PF00562 RNA polymerase Rpb2, domain 6 CLAN_RS02580 PF04560 RNA polymerase Rpb2, domain 7 CLAN_RS02585 PF04998 RNA polymerase Rpb1, domain 5 CLAN_RS02585 PF05000 RNA polymerase Rpb1, domain 4 CLAN_RS02585 PF04983 RNA polymerase Rpb1, domain 3 CLAN_RS02585 PF00623 RNA polymerase Rpb1, domain 2 CLAN_RS02585 PF04997 RNA polymerase Rpb1, domain 1 CLAN_RS02595 PF00164 Ribosomal protein S12/S23 CLAN_RS02600 PF00177 Ribosomal protein S7p/S5e CLAN_RS02605 PF03764 Elongation factor G, domain IV CLAN_RS02605 PF03144 Elongation factor Tu domain 2 CLAN_RS02605 PF00009 Elongation factor Tu GTP binding domain CLAN_RS02605 PF14492 Elongation Factor G, domain II CLAN_RS02605 PF00679 Elongation factor G C-terminus CLAN_RS02615 PF04023 FeoA domain CLAN_RS02620 PF02421 Ferrous iron transport protein B CLAN_RS02620 PF07664 Ferrous iron transport protein B C terminus CLAN_RS02620 PF07670 Nucleoside recognition CLAN_RS02625 PF01625 Peptide methionine sulfoxide reductase CLAN_RS02625 PF01641 SelR domain CLAN_RS02635 PF16916 Dimerisation domain of Zinc Transporter CLAN_RS02635 PF01545 Cation efflux family CLAN_RS02640 PF02583 Metal-sensitive transcriptional repressor CLAN_RS02660 PF01063 Amino-transferase class IV CLAN_RS02690 PF13247 4Fe-4S dicluster domain CLAN_RS02720 PF01795 MraW methylase family CLAN_RS02730 PF13145 PPIC-type PPIASE domain CLAN_RS02735 PF02491 SHS2 domain inserted in FTSA CLAN_RS02740 PF12327 FtsZ family, C-terminal domain CLAN_RS02740 PF00091 Tubulin/FtsZ family, GTPase domain CLAN_RS02745 PF00091 Tubulin/FtsZ family, GTPase domain CLAN_RS02745 PF12327 FtsZ family, C-terminal domain CLAN_RS02750 PF03616 Sodium/glutamate symporter CLAN_RS02760 PF05970 PIF1-like helicase CLAN_RS02760 PF02689 Helicase CLAN_RS02770 PF03548 Outer membrane lipoprotein carrier protein LolA CLAN_RS02775 PF07517 SecA DEAD-like domain CLAN_RS02775 PF07516 SecA Wing and Scaffold domain CLAN_RS02775 PF01043 SecA preprotein cross-linking domain CLAN_RS02775 PF02810 SEC-C motif CLAN_RS02780 PF02687 FtsX-like permease family CLAN_RS02780 PF12704 MacB-like periplasmic core domain CLAN_RS02785 PF02653 Branched-chain amino acid transport system / permease component CLAN_RS02790 PF02653 Branched-chain amino acid transport system / permease component CLAN_RS02790 PF11862 Domain of unknown function (DUF3382) CLAN_RS02795 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLAN_RS02795 PF00005 ABC transporter CLAN_RS02800 PF00005 ABC transporter CLAN_RS02815 PF02699 Preprotein translocase subunit CLAN_RS02820 PF02355 Protein export membrane protein CLAN_RS02825 PF02355 Protein export membrane protein CLAN_RS02825 PF07549 SecD/SecF GG Motif CLAN_RS02835 PF00133 tRNA synthetases class I (I, L, M and V) CLAN_RS02835 PF13603 Leucyl-tRNA synthetase, Domain 2 CLAN_RS02835 PF09334 tRNA synthetases class I (M) CLAN_RS02850 PF08245 Mur ligase middle domain CLAN_RS02855 PF01551 Peptidase family M23 CLAN_RS02855 PF04225 Opacity-associated protein A LysM-like domain CLAN_RS02865 PF00270 DEAD/DEAH box helicase CLAN_RS02865 PF17757 UvrB interaction domain CLAN_RS02865 PF02559 CarD-like/TRCF domain CLAN_RS02865 PF00271 Helicase conserved C-terminal domain CLAN_RS02865 PF03461 TRCF domain CLAN_RS02890 PF13380 CoA binding domain CLAN_RS02895 PF13291 ACT domain CLAN_RS02895 PF00291 Pyridoxal-phosphate dependent enzyme CLAN_RS02900 PF08459 UvrC Helix-hairpin-helix N-terminal CLAN_RS02900 PF01541 GIY-YIG catalytic domain CLAN_RS02900 PF02151 UvrB/uvrC motif CLAN_RS02910 PF00117 Glutamine amidotransferase class-I CLAN_RS02910 PF00958 GMP synthase C terminal domain CLAN_RS02910 PF02540 NAD synthase CLAN_RS02920 PF02673 Bacitracin resistance protein BacA CLAN_RS02925 PF02581 Thiamine monophosphate synthase CLAN_RS02930 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLAN_RS02935 PF00005 ABC transporter CLAN_RS02940 PF00528 Binding-protein-dependent transport system inner membrane component CLAN_RS02945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLAN_RS02945 PF00460 Flagella basal body rod protein CLAN_RS02950 PF00460 Flagella basal body rod protein CLAN_RS02950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLAN_RS02965 PF03062 MBOAT, membrane-bound O-acyltransferase family CLAN_RS02975 PF00795 Carbon-nitrogen hydrolase CLAN_RS03000 PF00083 Sugar (and other) transporter CLAN_RS03005 PF12848 ABC transporter CLAN_RS03005 PF00005 ABC transporter CLAN_RS03005 PF16326 ABC transporter C-terminal domain CLAN_RS03010 PF00209 Sodium:neurotransmitter symporter family CLAN_RS03015 PF16491 CAAX prenyl protease N-terminal, five membrane helices CLAN_RS03015 PF01435 Peptidase family M48 CLAN_RS03020 PF17827 PrmC N-terminal domain CLAN_RS03020 PF05175 Methyltransferase small domain CLAN_RS03030 PF03061 Thioesterase superfamily CLAN_RS03050 PF02844 Phosphoribosylglycinamide synthetase, N domain CLAN_RS03050 PF02843 Phosphoribosylglycinamide synthetase, C domain CLAN_RS03050 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLAN_RS03060 PF04453 LPS transport system D CLAN_RS03060 PF03968 OstA-like protein CLAN_RS03070 PF00013 KH domain CLAN_RS03070 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CLAN_RS03070 PF00575 S1 RNA binding domain CLAN_RS03070 PF03725 3' exoribonuclease family, domain 2 CLAN_RS03070 PF01138 3' exoribonuclease family, domain 1 CLAN_RS03080 PF01230 HIT domain CLAN_RS03085 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CLAN_RS03085 PF01409 tRNA synthetases class II core domain (F) CLAN_RS03090 PF01588 Putative tRNA binding domain CLAN_RS03090 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLAN_RS03090 PF03483 B3/4 domain CLAN_RS03090 PF03147 Ferredoxin-fold anticodon binding domain CLAN_RS03090 PF03484 tRNA synthetase B5 domain CLAN_RS03095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLAN_RS03100 PF02401 LytB protein CLAN_RS03105 PF00575 S1 RNA binding domain CLAN_RS03115 PF01842 ACT domain CLAN_RS03115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLAN_RS03115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLAN_RS03120 PF08207 Elongation factor P (EF-P) KOW-like domain CLAN_RS03120 PF09285 Elongation factor P, C-terminal CLAN_RS03120 PF01132 Elongation factor P (EF-P) OB domain CLAN_RS03125 PF02630 SCO1/SenC CLAN_RS03130 PF01098 Cell cycle protein CLAN_RS03135 PF00849 RNA pseudouridylate synthase CLAN_RS03135 PF01479 S4 domain CLAN_RS03145 PF02390 Putative methyltransferase CLAN_RS03150 PF00005 ABC transporter CLAN_RS03150 PF09383 NIL domain CLAN_RS03165 PF00696 Amino acid kinase family CLAN_RS03170 PF01192 RNA polymerase Rpb6 CLAN_RS03175 PF13291 ACT domain CLAN_RS03175 PF04607 Region found in RelA / SpoT proteins CLAN_RS03175 PF02824 TGS domain CLAN_RS03180 PF00579 tRNA synthetases class I (W and Y) CLAN_RS03190 PF01520 N-acetylmuramoyl-L-alanine amidase CLAN_RS03195 PF01266 FAD dependent oxidoreductase CLAN_RS03195 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CLAN_RS03205 PF00350 Dynamin family CLAN_RS03210 PF00350 Dynamin family CLAN_RS03215 PF02600 Disulfide bond formation protein DsbB CLAN_RS03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLAN_RS03225 PF00512 His Kinase A (phospho-acceptor) domain CLAN_RS03230 PF00483 Nucleotidyl transferase CLAN_RS03235 PF00342 Phosphoglucose isomerase CLAN_RS03240 PF00210 Ferritin-like domain CLAN_RS03245 PF04264 YceI-like domain CLAN_RS03265 PF01142 tRNA pseudouridine synthase D (TruD) CLAN_RS03270 PF00672 HAMP domain CLAN_RS03270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLAN_RS03270 PF12729 Four helix bundle sensory module for signal transduction CLAN_RS03275 PF14376 Haem-binding domain CLAN_RS03275 PF00034 Cytochrome c CLAN_RS03275 PF03150 Di-haem cytochrome c peroxidase CLAN_RS03290 PF02561 Flagellar protein FliS CLAN_RS03295 PF02465 Flagellar hook-associated protein 2 N-terminus CLAN_RS03295 PF07196 Flagellin hook IN motif CLAN_RS03295 PF07195 Flagellar hook-associated protein 2 C-terminus CLAN_RS03315 PF09186 Domain of unknown function (DUF1949) CLAN_RS03315 PF01205 Uncharacterized protein family UPF0029 CLAN_RS03320 PF04055 Radical SAM superfamily CLAN_RS03330 PF01739 CheR methyltransferase, SAM binding domain CLAN_RS03335 PF00072 Response regulator receiver domain CLAN_RS03335 PF01339 CheB methylesterase CLAN_RS03345 PF01330 RuvA N terminal domain CLAN_RS03345 PF07499 RuvA, C-terminal domain CLAN_RS03350 PF07478 D-ala D-ala ligase C-terminus CLAN_RS03350 PF01820 D-ala D-ala ligase N-terminus CLAN_RS03360 PF00561 alpha/beta hydrolase fold CLAN_RS03365 PF08245 Mur ligase middle domain CLAN_RS03365 PF02875 Mur ligase family, glutamate ligase domain CLAN_RS03365 PF01225 Mur ligase family, catalytic domain CLAN_RS03390 PF00860 Permease family CLAN_RS03395 PF04055 Radical SAM superfamily CLAN_RS03400 PF03717 Penicillin-binding Protein dimerisation domain CLAN_RS03400 PF00905 Penicillin binding protein transpeptidase domain CLAN_RS03405 PF02049 Flagellar hook-basal body complex protein FliE CLAN_RS03410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLAN_RS03410 PF00460 Flagella basal body rod protein CLAN_RS03420 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CLAN_RS03425 PF10431 C-terminal, D2-small domain, of ClpB protein CLAN_RS03425 PF07724 AAA domain (Cdc48 subfamily) CLAN_RS03425 PF00004 ATPase family associated with various cellular activities (AAA) CLAN_RS03425 PF17871 AAA lid domain CLAN_RS03425 PF02861 Clp amino terminal domain, pathogenicity island component CLAN_RS03430 PF02617 ATP-dependent Clp protease adaptor protein ClpS CLAN_RS03440 PF01668 SmpB protein CLAN_RS03445 PF00155 Aminotransferase class I and II CLAN_RS03450 PF06426 Serine acetyltransferase, N-terminal CLAN_RS03450 PF00132 Bacterial transferase hexapeptide (six repeats) CLAN_RS03455 PF17944 Arginine decarboxylase C-terminal helical extension CLAN_RS03455 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLAN_RS03455 PF17810 Arginine decarboxylase helical bundle domain CLAN_RS03460 PF03129 Anticodon binding domain CLAN_RS03460 PF13393 Histidyl-tRNA synthetase CLAN_RS03465 PF02223 Thymidylate kinase CLAN_RS03470 PF01467 Cytidylyltransferase-like CLAN_RS03485 PF03454 MoeA C-terminal region (domain IV) CLAN_RS03485 PF00994 Probable molybdopterin binding domain CLAN_RS03485 PF03453 MoeA N-terminal region (domain I and II) CLAN_RS03490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLAN_RS03495 PF01474 Class-II DAHP synthetase family CLAN_RS03500 PF01435 Peptidase family M48 CLAN_RS03505 PF02666 Phosphatidylserine decarboxylase CLAN_RS03510 PF00149 Calcineurin-like phosphoesterase CLAN_RS03515 PF01634 ATP phosphoribosyltransferase CLAN_RS03520 PF03309 Type III pantothenate kinase CLAN_RS03530 PF15437 Plasminogen-binding protein pgbA C-terminal CLAN_RS03540 PF02686 Glu-tRNAGln amidotransferase C subunit CLAN_RS03545 PF00437 Type II/IV secretion system protein CLAN_RS03555 PF01475 Ferric uptake regulator family CLAN_RS03560 PF01336 OB-fold nucleic acid binding domain CLAN_RS03560 PF00152 tRNA synthetases class II (D, K and N) CLAN_RS03565 PF00464 Serine hydroxymethyltransferase CLAN_RS03580 PF08501 Shikimate dehydrogenase substrate binding domain CLAN_RS03585 PF13662 Toprim domain CLAN_RS03585 PF02132 RecR protein CLAN_RS03595 PF00486 Transcriptional regulatory protein, C terminal CLAN_RS03595 PF00072 Response regulator receiver domain CLAN_RS03600 PF00684 DnaJ central domain CLAN_RS03600 PF00226 DnaJ domain CLAN_RS03600 PF01556 DnaJ C terminal domain CLAN_RS03610 PF01084 Ribosomal protein S18 CLAN_RS03615 PF00436 Single-strand binding protein family CLAN_RS03620 PF01250 Ribosomal protein S6 CLAN_RS03630 PF00773 RNB domain CLAN_RS03640 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CLAN_RS03640 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CLAN_RS03645 PF04748 Divergent polysaccharide deacetylase CLAN_RS03650 PF18255 DNA processing protein A sterile alpha motif domain CLAN_RS03650 PF02481 DNA recombination-mediator protein A CLAN_RS03655 PF03652 Holliday junction resolvase CLAN_RS03660 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CLAN_RS03660 PF01189 16S rRNA methyltransferase RsmB/F CLAN_RS03660 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CLAN_RS03665 PF00551 Formyl transferase CLAN_RS03665 PF01842 ACT domain CLAN_RS03670 PF00588 SpoU rRNA Methylase family CLAN_RS03685 PF02092 Glycyl-tRNA synthetase beta subunit CLAN_RS03700 PF08525 Opacity-associated protein A N-terminal motif CLAN_RS03700 PF01476 LysM domain CLAN_RS03700 PF01551 Peptidase family M23 CLAN_RS03710 PF00486 Transcriptional regulatory protein, C terminal CLAN_RS03710 PF00072 Response regulator receiver domain CLAN_RS03715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLAN_RS03720 PF02589 LUD domain CLAN_RS03725 PF02589 LUD domain CLAN_RS03725 PF13183 4Fe-4S dicluster domain CLAN_RS03725 PF11870 Domain of unknown function (DUF3390) CLAN_RS03730 PF02754 Cysteine-rich domain CLAN_RS03735 PF02652 L-lactate permease CLAN_RS03740 PF00183 Hsp90 protein CLAN_RS03755 PF00580 UvrD/REP helicase N-terminal domain CLAN_RS03755 PF13361 UvrD-like helicase C-terminal domain CLAN_RS03760 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CLAN_RS03760 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CLAN_RS03765 PF00990 Diguanylate cyclase, GGDEF domain CLAN_RS03770 PF08448 PAS fold CLAN_RS03770 PF00990 Diguanylate cyclase, GGDEF domain CLAN_RS03775 PF02348 Cytidylyltransferase CLAN_RS03780 PF00291 Pyridoxal-phosphate dependent enzyme CLAN_RS03785 PF00696 Amino acid kinase family CLAN_RS03790 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CLAN_RS03795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLAN_RS03800 PF02540 NAD synthase CLAN_RS03810 PF01008 Initiation factor 2 subunit family CLAN_RS03810 PF03061 Thioesterase superfamily CLAN_RS03815 PF08003 Protein of unknown function (DUF1698) CLAN_RS03825 PF07687 Peptidase dimerisation domain CLAN_RS03825 PF01546 Peptidase family M20/M25/M40 CLAN_RS03830 PF12323 Helix-turn-helix domain CLAN_RS03830 PF07282 Putative transposase DNA-binding domain CLAN_RS03830 PF01385 Probable transposase CLAN_RS03835 PF00376 MerR family regulatory protein CLAN_RS03835 PF09278 MerR, DNA binding CLAN_RS03845 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLAN_RS03845 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CLAN_RS03865 PF02623 FliW protein CLAN_RS03870 PF13525 Outer membrane lipoprotein CLAN_RS03875 PF00004 ATPase family associated with various cellular activities (AAA) CLAN_RS03875 PF05362 Lon protease (S16) C-terminal proteolytic domain CLAN_RS03875 PF02190 ATP-dependent protease La (LON) substrate-binding domain CLAN_RS03880 PF06628 Catalase-related immune-responsive CLAN_RS03880 PF00199 Catalase CLAN_RS03885 PF00023 Ankyrin repeat CLAN_RS03885 PF12796 Ankyrin repeats (3 copies) CLAN_RS03895 PF00291 Pyridoxal-phosphate dependent enzyme CLAN_RS03900 PF02082 Transcriptional regulator CLAN_RS03905 PF01053 Cys/Met metabolism PLP-dependent enzyme CLAN_RS03915 PF00764 Arginosuccinate synthase CLAN_RS03920 PF00589 Phage integrase family CLAN_RS03920 PF18644 Phage integrase SAM-like domain CLAN_RS03925 PF01098 Cell cycle protein CLAN_RS03930 PF03033 Glycosyltransferase family 28 N-terminal domain CLAN_RS03930 PF04101 Glycosyltransferase family 28 C-terminal domain CLAN_RS03935 PF00216 Bacterial DNA-binding protein CLAN_RS03940 PF01479 S4 domain CLAN_RS03950 PF00005 ABC transporter CLAN_RS03950 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLAN_RS03955 PF04963 Sigma-54 factor, core binding domain CLAN_RS03955 PF00309 Sigma-54 factor, Activator interacting domain (AID) CLAN_RS03955 PF04552 Sigma-54, DNA binding domain CLAN_RS03960 PF01761 3-dehydroquinate synthase CLAN_RS03970 PF00919 Uncharacterized protein family UPF0004 CLAN_RS03970 PF04055 Radical SAM superfamily CLAN_RS03975 PF01434 Peptidase family M41 CLAN_RS03975 PF06480 FtsH Extracellular CLAN_RS03975 PF17862 AAA+ lid domain CLAN_RS03975 PF00004 ATPase family associated with various cellular activities (AAA) CLAN_RS03980 PF00994 Probable molybdopterin binding domain CLAN_RS03985 PF01702 Queuine tRNA-ribosyltransferase CLAN_RS04010 PF13784 Fic/DOC family N-terminal CLAN_RS04010 PF02661 Fic/DOC family CLAN_RS04015 PF02384 N-6 DNA Methylase CLAN_RS04015 PF12161 HsdM N-terminal domain CLAN_RS04020 PF08463 EcoEI R protein C-terminal CLAN_RS04020 PF00271 Helicase conserved C-terminal domain CLAN_RS04020 PF04851 Type III restriction enzyme, res subunit CLAN_RS04020 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CLAN_RS04030 PF00106 short chain dehydrogenase CLAN_RS04035 PF05958 tRNA (Uracil-5-)-methyltransferase CLAN_RS04040 PF00474 Sodium:solute symporter family CLAN_RS04055 PF01717 Cobalamin-independent synthase, Catalytic domain CLAN_RS04055 PF08267 Cobalamin-independent synthase, N-terminal domain CLAN_RS04065 PF02503 Polyphosphate kinase middle domain CLAN_RS04065 PF17941 Polyphosphate kinase C-terminal domain 1 CLAN_RS04065 PF13090 Polyphosphate kinase C-terminal domain 2 CLAN_RS04065 PF13089 Polyphosphate kinase N-terminal domain CLAN_RS04070 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CLAN_RS04070 PF00132 Bacterial transferase hexapeptide (six repeats) CLAN_RS04075 PF10369 Small subunit of acetolactate synthase CLAN_RS04080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLAN_RS04080 PF00205 Thiamine pyrophosphate enzyme, central domain CLAN_RS04080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLAN_RS04085 PF13419 Haloacid dehalogenase-like hydrolase CLAN_RS04100 PF11412 Disulphide bond corrector protein DsbC CLAN_RS04100 PF00085 Thioredoxin CLAN_RS04100 PF02683 Cytochrome C biogenesis protein transmembrane region CLAN_RS04105 PF02773 S-adenosylmethionine synthetase, C-terminal domain CLAN_RS04105 PF00438 S-adenosylmethionine synthetase, N-terminal domain CLAN_RS04105 PF02772 S-adenosylmethionine synthetase, central domain CLAN_RS04110 PF00375 Sodium:dicarboxylate symporter family CLAN_RS04115 PF01432 Peptidase family M3 CLAN_RS04115 PF08439 Oligopeptidase F CLAN_RS04125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLAN_RS04125 PF03466 LysR substrate binding domain CLAN_RS04130 PF13361 UvrD-like helicase C-terminal domain CLAN_RS04130 PF00580 UvrD/REP helicase N-terminal domain CLAN_RS04135 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLAN_RS04140 PF02599 Global regulator protein family CLAN_RS04145 PF00288 GHMP kinases N terminal domain CLAN_RS04150 PF03948 Ribosomal protein L9, C-terminal domain CLAN_RS04150 PF01281 Ribosomal protein L9, N-terminal domain CLAN_RS04155 PF00227 Proteasome subunit CLAN_RS04160 PF07724 AAA domain (Cdc48 subfamily) CLAN_RS04160 PF10431 C-terminal, D2-small domain, of ClpB protein CLAN_RS04165 PF01926 50S ribosome-binding GTPase CLAN_RS04165 PF07650 KH domain CLAN_RS04170 PF00925 GTP cyclohydrolase II CLAN_RS04170 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLAN_RS04180 PF00849 RNA pseudouridylate synthase CLAN_RS04185 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CLAN_RS04185 PF02390 Putative methyltransferase CLAN_RS04195 PF01784 NIF3 (NGG1p interacting factor 3) CLAN_RS04200 PF02091 Glycyl-tRNA synthetase alpha subunit CLAN_RS04210 PF00731 AIR carboxylase CLAN_RS04215 PF01136 Peptidase family U32 CLAN_RS04230 PF02811 PHP domain CLAN_RS04235 PF03951 Glutamine synthetase, beta-Grasp domain CLAN_RS04235 PF00120 Glutamine synthetase, catalytic domain CLAN_RS04240 PF01648 4'-phosphopantetheinyl transferase superfamily CLAN_RS04245 PF03748 Flagellar basal body-associated protein FliL CLAN_RS04250 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLAN_RS04255 PF00202 Aminotransferase class-III CLAN_RS04260 PF03458 UPF0126 domain CLAN_RS04265 PF00258 Flavodoxin CLAN_RS04275 PF00205 Thiamine pyrophosphate enzyme, central domain CLAN_RS04275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLAN_RS04275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLAN_RS04280 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLAN_RS04280 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLAN_RS04280 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLAN_RS04290 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLAN_RS04290 PF00056 lactate/malate dehydrogenase, NAD binding domain CLAN_RS04295 PF03971 Monomeric isocitrate dehydrogenase CLAN_RS04305 PF04305 Protein of unknown function (DUF455) CLAN_RS04320 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLAN_RS04320 PF00929 Exonuclease CLAN_RS04320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLAN_RS04320 PF14579 Helix-hairpin-helix motif CLAN_RS04320 PF02811 PHP domain CLAN_RS04325 PF00834 Ribulose-phosphate 3 epimerase family CLAN_RS04330 PF02163 Peptidase family M50 CLAN_RS04330 PF17820 PDZ domain CLAN_RS04335 PF01168 Alanine racemase, N-terminal domain CLAN_RS04340 PF07724 AAA domain (Cdc48 subfamily) CLAN_RS04340 PF02861 Clp amino terminal domain, pathogenicity island component CLAN_RS04340 PF10431 C-terminal, D2-small domain, of ClpB protein CLAN_RS04340 PF00004 ATPase family associated with various cellular activities (AAA) CLAN_RS04340 PF17871 AAA lid domain CLAN_RS04345 PF13180 PDZ domain CLAN_RS04345 PF03572 Peptidase family S41 CLAN_RS04350 PF01259 SAICAR synthetase CLAN_RS04355 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CLAN_RS04370 PF01553 Acyltransferase CLAN_RS04375 PF09335 SNARE associated Golgi protein CLAN_RS04385 PF00813 FliP family CLAN_RS04390 PF13847 Methyltransferase domain CLAN_RS04395 PF06574 FAD synthetase CLAN_RS04395 PF01687 Riboflavin kinase CLAN_RS04405 PF03120 NAD-dependent DNA ligase OB-fold domain CLAN_RS04405 PF12826 Helix-hairpin-helix motif CLAN_RS04405 PF01653 NAD-dependent DNA ligase adenylation domain CLAN_RS04405 PF00533 BRCA1 C Terminus (BRCT) domain CLAN_RS04410 PF00809 Pterin binding enzyme CLAN_RS04425 PF00696 Amino acid kinase family CLAN_RS04425 PF13840 ACT domain CLAN_RS04425 PF01842 ACT domain CLAN_RS04430 PF00293 NUDIX domain CLAN_RS04435 PF04055 Radical SAM superfamily CLAN_RS04435 PF06969 HemN C-terminal domain CLAN_RS04440 PF00012 Hsp70 protein CLAN_RS04445 PF01025 GrpE CLAN_RS04465 PF00771 FHIPEP family CLAN_RS04470 PF02082 Transcriptional regulator CLAN_RS04475 PF03023 Lipid II flippase MurJ CLAN_RS04480 PF01406 tRNA synthetases class I (C) catalytic domain CLAN_RS04480 PF09190 DALR domain CLAN_RS04485 PF00664 ABC transporter transmembrane region CLAN_RS04485 PF00005 ABC transporter CLAN_RS04500 PF01180 Dihydroorotate dehydrogenase CLAN_RS04505 PF05193 Peptidase M16 inactive domain CLAN_RS04505 PF00675 Insulinase (Peptidase family M16) CLAN_RS04510 PF00701 Dihydrodipicolinate synthetase family CLAN_RS04520 PF01066 CDP-alcohol phosphatidyltransferase CLAN_RS04525 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLAN_RS04530 PF00528 Binding-protein-dependent transport system inner membrane component CLAN_RS04535 PF00005 ABC transporter CLAN_RS04540 PF00892 EamA-like transporter family CLAN_RS04550 PF00933 Glycosyl hydrolase family 3 N terminal domain CLAN_RS04550 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLAN_RS04555 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLAN_RS04555 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CLAN_RS04560 PF02934 GatB/GatE catalytic domain CLAN_RS04560 PF02637 GatB domain CLAN_RS04575 PF00119 ATP synthase A chain CLAN_RS04580 PF01925 Sulfite exporter TauE/SafE CLAN_RS04585 PF02080 TrkA-C domain CLAN_RS04585 PF03471 Transporter associated domain CLAN_RS04585 PF00999 Sodium/hydrogen exchanger family CLAN_RS04590 PF02254 TrkA-N domain CLAN_RS04590 PF00999 Sodium/hydrogen exchanger family CLAN_RS04595 PF13411 MerR HTH family regulatory protein CLAN_RS04600 PF00684 DnaJ central domain CLAN_RS04600 PF01556 DnaJ C terminal domain CLAN_RS04600 PF00226 DnaJ domain CLAN_RS04605 PF17820 PDZ domain CLAN_RS04605 PF13180 PDZ domain CLAN_RS04610 PF00072 Response regulator receiver domain CLAN_RS04610 PF00486 Transcriptional regulatory protein, C terminal CLAN_RS04625 PF02321 Outer membrane efflux protein CLAN_RS04630 PF12704 MacB-like periplasmic core domain CLAN_RS04630 PF00005 ABC transporter CLAN_RS04630 PF02687 FtsX-like permease family CLAN_RS04635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLAN_RS04640 PF12804 MobA-like NTP transferase domain CLAN_RS04640 PF00132 Bacterial transferase hexapeptide (six repeats) CLAN_RS04645 PF04127 DNA / pantothenate metabolism flavoprotein CLAN_RS04645 PF02441 Flavoprotein CLAN_RS04655 PF01255 Putative undecaprenyl diphosphate synthase CLAN_RS04660 PF01478 Type IV leader peptidase family CLAN_RS04660 PF06750 Bacterial Peptidase A24 N-terminal domain CLAN_RS04670 PF01416 tRNA pseudouridine synthase CLAN_RS04690 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CLAN_RS04695 PF12801 4Fe-4S binding domain CLAN_RS04695 PF13237 4Fe-4S dicluster domain CLAN_RS04700 PF12800 4Fe-4S binding domain CLAN_RS04700 PF12838 4Fe-4S dicluster domain CLAN_RS04705 PF01568 Molydopterin dinucleotide binding domain CLAN_RS04705 PF00384 Molybdopterin oxidoreductase CLAN_RS04705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLAN_RS04710 PF01926 50S ribosome-binding GTPase CLAN_RS04710 PF06071 Protein of unknown function (DUF933) CLAN_RS04715 PF00883 Cytosol aminopeptidase family, catalytic domain CLAN_RS04725 PF00156 Phosphoribosyl transferase domain CLAN_RS04735 PF02502 Ribose/Galactose Isomerase CLAN_RS04740 PF10502 Signal peptidase, peptidase S26 CLAN_RS04745 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLAN_RS04745 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLAN_RS04755 PF00202 Aminotransferase class-III CLAN_RS04775 PF01312 FlhB HrpN YscU SpaS Family CLAN_RS04780 PF02535 ZIP Zinc transporter CLAN_RS04795 PF01588 Putative tRNA binding domain CLAN_RS04795 PF00133 tRNA synthetases class I (I, L, M and V) CLAN_RS04795 PF09334 tRNA synthetases class I (M) CLAN_RS04805 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CLAN_RS04815 PF07687 Peptidase dimerisation domain CLAN_RS04815 PF01546 Peptidase family M20/M25/M40 CLAN_RS04825 PF01713 Smr domain CLAN_RS04825 PF00488 MutS domain V CLAN_RS04845 PF00528 Binding-protein-dependent transport system inner membrane component CLAN_RS04850 PF00005 ABC transporter CLAN_RS04855 PF00669 Bacterial flagellin N-terminal helical region CLAN_RS04870 PF07715 TonB-dependent Receptor Plug Domain CLAN_RS04870 PF00593 TonB dependent receptor CLAN_RS04890 PF00815 Histidinol dehydrogenase CLAN_RS04895 PF03883 Peroxide stress protein YaaA CLAN_RS04905 PF00218 Indole-3-glycerol phosphate synthase CLAN_RS04915 PF03692 Putative zinc- or iron-chelating domain CLAN_RS04920 PF08468 Methyltransferase small domain N-terminal CLAN_RS04920 PF05175 Methyltransferase small domain CLAN_RS04930 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLAN_RS04950 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLAN_RS04955 PF06508 Queuosine biosynthesis protein QueC CLAN_RS04960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLAN_RS04960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLAN_RS04960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLAN_RS04960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLAN_RS04970 PF05690 Thiazole biosynthesis protein ThiG CLAN_RS04975 PF06968 Biotin and Thiamin Synthesis associated domain CLAN_RS04975 PF04055 Radical SAM superfamily CLAN_RS04980 PF00669 Bacterial flagellin N-terminal helical region CLAN_RS04980 PF00700 Bacterial flagellin C-terminal helical region CLAN_RS04980 PF07196 Flagellin hook IN motif CLAN_RS05020 PF12072 Domain of unknown function (DUF3552) CLAN_RS05020 PF01966 HD domain CLAN_RS05025 PF01812 5-formyltetrahydrofolate cyclo-ligase family CLAN_RS05030 PF00578 AhpC/TSA family CLAN_RS05035 PF00448 SRP54-type protein, GTPase domain CLAN_RS05040 PF18073 Rubredoxin metal binding domain CLAN_RS05070 PF02664 S-Ribosylhomocysteinase (LuxS) CLAN_RS05075 PF00258 Flavodoxin CLAN_RS05100 PF01116 Fructose-bisphosphate aldolase class-II CLAN_RS05110 PF00730 HhH-GPD superfamily base excision DNA repair protein CLAN_RS05110 PF10576 Iron-sulfur binding domain of endonuclease III CLAN_RS05110 PF00633 Helix-hairpin-helix motif CLAN_RS05120 PF00772 DnaB-like helicase N terminal domain CLAN_RS05120 PF03796 DnaB-like helicase C terminal domain CLAN_RS05125 PF04551 GcpE protein CLAN_RS05135 PF06434 Aconitate hydratase 2 N-terminus CLAN_RS05135 PF11791 Aconitate B N-terminal domain CLAN_RS05135 PF00330 Aconitase family (aconitate hydratase) CLAN_RS05145 PF01578 Cytochrome C assembly protein CLAN_RS05145 PF05140 ResB-like family CLAN_RS05150 PF03900 Porphobilinogen deaminase, C-terminal domain CLAN_RS05150 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CLAN_RS05160 PF03129 Anticodon binding domain CLAN_RS05160 PF04073 Aminoacyl-tRNA editing domain CLAN_RS05160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLAN_RS05165 PF01488 Shikimate / quinate 5-dehydrogenase CLAN_RS05165 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CLAN_RS05165 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CLAN_RS05170 PF00348 Polyprenyl synthetase CLAN_RS05185 PF01580 FtsK/SpoIIIE family CLAN_RS05185 PF09397 Ftsk gamma domain CLAN_RS05185 PF17854 FtsK alpha domain CLAN_RS05190 PF00669 Bacterial flagellin N-terminal helical region CLAN_RS05190 PF00700 Bacterial flagellin C-terminal helical region CLAN_RS05195 PF01384 Phosphate transporter family CLAN_RS05200 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CLAN_RS05205 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CLAN_RS05215 PF04377 Arginine-tRNA-protein transferase, C terminus CLAN_RS05215 PF04376 Arginine-tRNA-protein transferase, N terminus CLAN_RS05225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLAN_RS05225 PF02785 Biotin carboxylase C-terminal domain CLAN_RS05225 PF00289 Biotin carboxylase, N-terminal domain CLAN_RS05230 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLAN_RS05235 PF02719 Polysaccharide biosynthesis protein CLAN_RS05240 PF00700 Bacterial flagellin C-terminal helical region CLAN_RS05240 PF07196 Flagellin hook IN motif CLAN_RS05240 PF00669 Bacterial flagellin N-terminal helical region CLAN_RS05245 PF00909 Ammonium Transporter Family CLAN_RS05260 PF03717 Penicillin-binding Protein dimerisation domain CLAN_RS05260 PF00905 Penicillin binding protein transpeptidase domain CLAN_RS05270 PF00583 Acetyltransferase (GNAT) family CLAN_RS05270 PF01047 MarR family CLAN_RS05275 PF01926 50S ribosome-binding GTPase CLAN_RS05295 PF00475 Imidazoleglycerol-phosphate dehydratase CLAN_RS05300 PF03330 Lytic transglycolase CLAN_RS05300 PF05036 Sporulation related domain CLAN_RS05310 PF01026 TatD related DNase CLAN_RS05315 PF00990 Diguanylate cyclase, GGDEF domain CLAN_RS05315 PF17158 Membrane-associated sensor, integral membrane domain CLAN_RS05320 PF13476 AAA domain CLAN_RS05325 PF01513 ATP-NAD kinase CLAN_RS05330 PF02938 GAD domain CLAN_RS05330 PF00152 tRNA synthetases class II (D, K and N) CLAN_RS05330 PF01336 OB-fold nucleic acid binding domain CLAN_RS05340 PF00719 Inorganic pyrophosphatase CLAN_RS05345 PF02130 Uncharacterized protein family UPF0054 CLAN_RS05350 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CLAN_RS05355 PF00890 FAD binding domain CLAN_RS05355 PF02910 Fumarate reductase flavoprotein C-term CLAN_RS05360 PF13085 2Fe-2S iron-sulfur cluster binding domain CLAN_RS05360 PF13183 4Fe-4S dicluster domain CLAN_RS05375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLAN_RS05385 PF01225 Mur ligase family, catalytic domain CLAN_RS05385 PF02875 Mur ligase family, glutamate ligase domain CLAN_RS05385 PF08245 Mur ligase middle domain CLAN_RS05395 PF02609 Exonuclease VII small subunit CLAN_RS05400 PF00561 alpha/beta hydrolase fold CLAN_RS05405 PF00478 IMP dehydrogenase / GMP reductase domain CLAN_RS05405 PF00571 CBS domain CLAN_RS05410 PF01425 Amidase CLAN_RS05415 PF00133 tRNA synthetases class I (I, L, M and V) CLAN_RS05415 PF08264 Anticodon-binding domain of tRNA CLAN_RS05420 PF00312 Ribosomal protein S15 CLAN_RS05425 PF02416 mttA/Hcf106 family CLAN_RS05430 PF00902 Sec-independent protein translocase protein (TatC) CLAN_RS05435 PF02547 Queuosine biosynthesis protein CLAN_RS05445 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CLAN_RS05450 PF00586 AIR synthase related protein, N-terminal domain CLAN_RS05450 PF02769 AIR synthase related protein, C-terminal domain CLAN_RS05455 PF01924 Hydrogenase formation hypA family CLAN_RS05465 PF00145 C-5 cytosine-specific DNA methylase CLAN_RS05465 PF01381 Helix-turn-helix CLAN_RS05470 PF01455 HupF/HypC family CLAN_RS05475 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLAN_RS05480 PF01300 Telomere recombination CLAN_RS05480 PF00708 Acylphosphatase CLAN_RS05480 PF17788 HypF Kae1-like domain CLAN_RS05480 PF07503 HypF finger CLAN_RS05490 PF01750 Hydrogenase maturation protease CLAN_RS05495 PF01292 Prokaryotic cytochrome b561 CLAN_RS05500 PF00374 Nickel-dependent hydrogenase CLAN_RS05505 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CLAN_RS05505 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CLAN_RS05505 PF10518 TAT (twin-arginine translocation) pathway signal sequence CLAN_RS05515 PF03591 AzlC protein CLAN_RS05520 PF10415 Fumarase C C-terminus CLAN_RS05520 PF00206 Lyase CLAN_RS05525 PF00133 tRNA synthetases class I (I, L, M and V) CLAN_RS05525 PF10458 Valyl tRNA synthetase tRNA binding arm CLAN_RS05525 PF08264 Anticodon-binding domain of tRNA CLAN_RS05535 PF00005 ABC transporter CLAN_RS05535 PF09383 NIL domain CLAN_RS05540 PF00528 Binding-protein-dependent transport system inner membrane component CLAN_RS05550 PF08543 Phosphomethylpyrimidine kinase CLAN_RS05550 PF02581 Thiamine monophosphate synthase CLAN_RS05555 PF03180 NLPA lipoprotein CLAN_RS05560 PF00830 Ribosomal L28 family CLAN_RS05570 PF01960 ArgJ family CLAN_RS05580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLAN_RS05580 PF02743 Cache domain CLAN_RS05580 PF00672 HAMP domain CLAN_RS05590 PF00994 Probable molybdopterin binding domain CLAN_RS05590 PF02464 Competence-damaged protein CLAN_RS05595 PF00762 Ferrochelatase CLAN_RS05610 PF00137 ATP synthase subunit C CLAN_RS05630 PF00535 Glycosyl transferase family 2 CLAN_RS05640 PF00209 Sodium:neurotransmitter symporter family CLAN_RS05645 PF00682 HMGL-like CLAN_RS05645 PF00364 Biotin-requiring enzyme CLAN_RS05645 PF02436 Conserved carboxylase domain CLAN_RS05650 PF01293 Phosphoenolpyruvate carboxykinase CLAN_RS05655 PF14698 Argininosuccinate lyase C-terminal CLAN_RS05655 PF00206 Lyase CLAN_RS05725 PF00375 Sodium:dicarboxylate symporter family CLAN_RS05750 PF00700 Bacterial flagellin C-terminal helical region CLAN_RS05750 PF00669 Bacterial flagellin N-terminal helical region CLAN_RS05750 PF07196 Flagellin hook IN motif CLAN_RS05765 PF08502 LeuA allosteric (dimerisation) domain CLAN_RS05765 PF00682 HMGL-like CLAN_RS05770 PF01066 CDP-alcohol phosphatidyltransferase CLAN_RS05780 PF17862 AAA+ lid domain CLAN_RS05780 PF00004 ATPase family associated with various cellular activities (AAA) CLAN_RS05780 PF01434 Peptidase family M41 CLAN_RS05790 PF00072 Response regulator receiver domain CLAN_RS05795 PF00977 Histidine biosynthesis protein CLAN_RS05800 PF00117 Glutamine amidotransferase class-I CLAN_RS05810 PF02719 Polysaccharide biosynthesis protein CLAN_RS05815 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLAN_RS05845 PF07804 HipA-like C-terminal domain CLAN_RS05860 PF08245 Mur ligase middle domain CLAN_RS05865 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CLAN_RS05865 PF00953 Glycosyl transferase family 4 CLAN_RS05870 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CLAN_RS05870 PF01676 Metalloenzyme superfamily CLAN_RS05880 PF00550 Phosphopantetheine attachment site CLAN_RS05885 PF00109 Beta-ketoacyl synthase, N-terminal domain CLAN_RS05885 PF02801 Beta-ketoacyl synthase, C-terminal domain CLAN_RS05890 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLAN_RS05920 PF03462 PCRF domain CLAN_RS05920 PF00472 RF-1 domain CLAN_RS05925 PF02569 Pantoate-beta-alanine ligase CLAN_RS05930 PF04055 Radical SAM superfamily CLAN_RS05930 PF18693 TRAM domain CLAN_RS05930 PF00919 Uncharacterized protein family UPF0004 CLAN_RS05935 PF01171 PP-loop family CLAN_RS05960 PF04055 Radical SAM superfamily CLAN_RS05960 PF00919 Uncharacterized protein family UPF0004 CLAN_RS05960 PF01938 TRAM domain CLAN_RS05970 PF08529 NusA N-terminal domain CLAN_RS05970 PF13184 NusA-like KH domain CLAN_RS05980 PF04851 Type III restriction enzyme, res subunit CLAN_RS05985 PF00005 ABC transporter CLAN_RS05985 PF17755 UvrA DNA-binding domain CLAN_RS05985 PF17760 UvrA interaction domain CLAN_RS05990 PF00005 ABC transporter CLAN_RS05995 PF00528 Binding-protein-dependent transport system inner membrane component CLAN_RS06000 PF13416 Bacterial extracellular solute-binding protein CLAN_RS06005 PF00939 Sodium:sulfate symporter transmembrane region CLAN_RS06015 PF18764 Nitrous oxide reductase propeller repeat CLAN_RS06015 PF13473 Cupredoxin-like domain CLAN_RS06015 PF18793 Nitrous oxide reductase propeller repeat 2 CLAN_RS06025 PF05048 Periplasmic copper-binding protein (NosD) CLAN_RS06030 PF12838 4Fe-4S dicluster domain CLAN_RS06045 PF12801 4Fe-4S binding domain CLAN_RS06045 PF13237 4Fe-4S dicluster domain CLAN_RS06050 PF08402 TOBE domain CLAN_RS06050 PF00005 ABC transporter CLAN_RS06070 PF01171 PP-loop family CLAN_RS06075 PF01048 Phosphorylase superfamily CLAN_RS06080 PF00698 Acyl transferase domain CLAN_RS06085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLAN_RS06100 PF04052 TolB amino-terminal domain CLAN_RS06110 PF02472 Biopolymer transport protein ExbD/TolR CLAN_RS06115 PF01618 MotA/TolQ/ExbB proton channel family CLAN_RS06120 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CLAN_RS06125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLAN_RS06125 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLAN_RS06130 PF00231 ATP synthase CLAN_RS06135 PF00306 ATP synthase alpha/beta chain, C terminal domain CLAN_RS06135 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLAN_RS06135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLAN_RS06140 PF00213 ATP synthase delta (OSCP) subunit CLAN_RS06145 PF00430 ATP synthase B/B' CF(0) CLAN_RS06155 PF17762 HTH domain found in ParB protein CLAN_RS06155 PF02195 ParB-like nuclease domain CLAN_RS06160 PF13614 AAA domain CLAN_RS06165 PF02237 Biotin protein ligase C terminal domain CLAN_RS06165 PF03099 Biotin/lipoate A/B protein ligase family CLAN_RS06165 PF08279 HTH domain CLAN_RS06170 PF00551 Formyl transferase CLAN_RS06170 PF02911 Formyl transferase, C-terminal domain CLAN_RS06175 PF00696 Amino acid kinase family CLAN_RS06180 PF01018 GTP1/OBG CLAN_RS06180 PF01926 50S ribosome-binding GTPase CLAN_RS06185 PF01016 Ribosomal L27 protein CLAN_RS06190 PF00829 Ribosomal prokaryotic L21 protein CLAN_RS06195 PF03150 Di-haem cytochrome c peroxidase CLAN_RS06195 PF00034 Cytochrome c CLAN_RS06205 PF02348 Cytidylyltransferase CLAN_RS06215 PF01618 MotA/TolQ/ExbB proton channel family CLAN_RS06220 PF02472 Biopolymer transport protein ExbD/TolR CLAN_RS06230 PF03102 NeuB family CLAN_RS06230 PF08666 SAF domain CLAN_RS06235 PF03102 NeuB family CLAN_RS06235 PF08666 SAF domain CLAN_RS06240 PF02350 UDP-N-acetylglucosamine 2-epimerase CLAN_RS06245 PF00483 Nucleotidyl transferase CLAN_RS06255 PF02348 Cytidylyltransferase CLAN_RS06265 PF08241 Methyltransferase domain CLAN_RS06270 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLAN_RS06270 PF04509 CheC-like family CLAN_RS06275 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLAN_RS06275 PF02154 Flagellar motor switch protein FliM CLAN_RS06280 PF04542 Sigma-70 region 2 CLAN_RS06280 PF04545 Sigma-70, region 4 CLAN_RS06280 PF04539 Sigma-70 region 3 CLAN_RS06290 PF10609 NUBPL iron-transfer P-loop NTPase CLAN_RS06295 PF00448 SRP54-type protein, GTPase domain CLAN_RS06300 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLAN_RS06305 PF00557 Metallopeptidase family M24 CLAN_RS06305 PF01321 Creatinase/Prolidase N-terminal domain CLAN_RS06310 PF01220 Dehydroquinase class II CLAN_RS06315 PF01979 Amidohydrolase family CLAN_RS06320 PF01343 Peptidase family S49 CLAN_RS06325 PF03473 MOSC domain CLAN_RS06330 PF03738 Glutathionylspermidine synthase preATP-grasp CLAN_RS06335 PF02441 Flavoprotein CLAN_RS06345 PF03275 UDP-galactopyranose mutase CLAN_RS06355 PF00534 Glycosyl transferases group 1 CLAN_RS06355 PF13439 Glycosyltransferase Family 4 CLAN_RS06360 PF00535 Glycosyl transferase family 2 CLAN_RS06360 PF01501 Glycosyl transferase family 8 CLAN_RS06365 PF00535 Glycosyl transferase family 2 CLAN_RS06370 PF00534 Glycosyl transferases group 1 CLAN_RS06410 PF02040 Arsenical pump membrane protein CLAN_RS06415 PF00107 Zinc-binding dehydrogenase CLAN_RS06415 PF08240 Alcohol dehydrogenase GroES-like domain CLAN_RS06425 PF05538 Campylobacter major outer membrane protein CLAN_RS06440 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLAN_RS06445 PF01029 NusB family CLAN_RS06450 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLAN_RS06455 PF00893 Small Multidrug Resistance protein CLAN_RS06465 PF00793 DAHP synthetase I family CLAN_RS06470 PF00710 Asparaginase, N-terminal CLAN_RS06470 PF17763 Glutaminase/Asparaginase C-terminal domain CLAN_RS06480 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLAN_RS06480 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLAN_RS06480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLAN_RS06480 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLAN_RS06480 PF10371 Domain of unknown function CLAN_RS06485 PF13419 Haloacid dehalogenase-like hydrolase CLAN_RS06490 PF00924 Mechanosensitive ion channel CLAN_RS06490 PF05552 Conserved TM helix CLAN_RS06495 PF05736 OprF membrane domain CLAN_RS06495 PF00691 OmpA family CLAN_RS06500 PF00380 Ribosomal protein S9/S16 CLAN_RS06505 PF00572 Ribosomal protein L13 CLAN_RS06510 PF00580 UvrD/REP helicase N-terminal domain CLAN_RS06510 PF13361 UvrD-like helicase C-terminal domain CLAN_RS06510 PF12705 PD-(D/E)XK nuclease superfamily CLAN_RS06540 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CLAN_RS06540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLAN_RS06555 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLAN_RS06560 PF00486 Transcriptional regulatory protein, C terminal CLAN_RS06560 PF00072 Response regulator receiver domain CLAN_RS06570 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLAN_RS06570 PF00117 Glutamine amidotransferase class-I CLAN_RS06590 PF00709 Adenylosuccinate synthetase CLAN_RS06595 PF13393 Histidyl-tRNA synthetase CLAN_RS06640 PF08402 TOBE domain CLAN_RS06640 PF00005 ABC transporter CLAN_RS06645 PF00528 Binding-protein-dependent transport system inner membrane component CLAN_RS06660 PF00425 chorismate binding enzyme CLAN_RS06660 PF04715 Anthranilate synthase component I, N terminal region CLAN_RS06665 PF00591 Glycosyl transferase family, a/b domain CLAN_RS06665 PF02885 Glycosyl transferase family, helical bundle domain CLAN_RS06665 PF00117 Glutamine amidotransferase class-I CLAN_RS06670 PF00145 C-5 cytosine-specific DNA methylase CLAN_RS06675 PF00145 C-5 cytosine-specific DNA methylase CLAN_RS06690 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CLAN_RS06690 PF00218 Indole-3-glycerol phosphate synthase CLAN_RS06695 PF00291 Pyridoxal-phosphate dependent enzyme CLAN_RS06700 PF00290 Tryptophan synthase alpha chain CLAN_RS06710 PF04509 CheC-like family CLAN_RS06710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLAN_RS06720 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CLAN_RS06720 PF14602 Hexapeptide repeat of succinyl-transferase CLAN_RS06725 PF00005 ABC transporter CLAN_RS06725 PF12848 ABC transporter CLAN_RS06740 PF00156 Phosphoribosyl transferase domain CLAN_RS06745 PF01113 Dihydrodipicolinate reductase, N-terminus CLAN_RS06745 PF05173 Dihydrodipicolinate reductase, C-terminus CLAN_RS06750 PF00669 Bacterial flagellin N-terminal helical region CLAN_RS06750 PF00700 Bacterial flagellin C-terminal helical region CLAN_RS06750 PF07196 Flagellin hook IN motif CLAN_RS06760 PF03641 Possible lysine decarboxylase CLAN_RS06765 PF01872 RibD C-terminal domain CLAN_RS06765 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLAN_RS06770 PF17384 RimP C-terminal SH3 domain CLAN_RS06770 PF02576 RimP N-terminal domain CLAN_RS06775 PF02033 Ribosome-binding factor A CLAN_RS06780 PF04760 Translation initiation factor IF-2, N-terminal region CLAN_RS06780 PF00009 Elongation factor Tu GTP binding domain CLAN_RS06780 PF11987 Translation-initiation factor 2 CLAN_RS06790 PF00288 GHMP kinases N terminal domain CLAN_RS06800 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CLAN_RS06810 PF02153 Prephenate dehydrogenase CLAN_RS06810 PF01842 ACT domain CLAN_RS06815 PF01103 Surface antigen CLAN_RS06815 PF07244 Surface antigen variable number repeat CLAN_RS06825 PF08521 Two-component sensor kinase N-terminal CLAN_RS06825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLAN_RS06825 PF00512 His Kinase A (phospho-acceptor) domain CLAN_RS06830 PF00486 Transcriptional regulatory protein, C terminal CLAN_RS06830 PF00072 Response regulator receiver domain CLAN_RS06840 PF02660 Glycerol-3-phosphate acyltransferase CLAN_RS06845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLAN_RS06845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLAN_RS06850 PF02504 Fatty acid synthesis protein CLAN_RS06855 PF01783 Ribosomal L32p protein family CLAN_RS06865 PF00334 Nucleoside diphosphate kinase CLAN_RS06870 PF00037 4Fe-4S binding domain CLAN_RS06875 PF00691 OmpA family CLAN_RS06875 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLAN_RS06880 PF01618 MotA/TolQ/ExbB proton channel family CLAN_RS06885 PF01367 5'-3' exonuclease, C-terminal SAM fold CLAN_RS06885 PF00476 DNA polymerase family A CLAN_RS06885 PF01612 3'-5' exonuclease CLAN_RS06885 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLAN_RS06895 PF04452 RNA methyltransferase CLAN_RS06920 PF06463 Molybdenum Cofactor Synthesis C CLAN_RS06920 PF04055 Radical SAM superfamily CLAN_RS06950 PF00814 Glycoprotease family CLAN_RS06960 PF13288 DXP reductoisomerase C-terminal domain CLAN_RS06960 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLAN_RS06960 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CLAN_RS06980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLAN_RS06980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLAN_RS06985 PF04461 Protein of unknown function (DUF520) CLAN_RS06995 PF06969 HemN C-terminal domain CLAN_RS06995 PF04055 Radical SAM superfamily CLAN_RS07005 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLAN_RS07010 PF03949 Malic enzyme, NAD binding domain CLAN_RS07010 PF01515 Phosphate acetyl/butaryl transferase CLAN_RS07010 PF00390 Malic enzyme, N-terminal domain CLAN_RS07025 PF02621 Menaquinone biosynthesis CLAN_RS07030 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLAN_RS07030 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLAN_RS07035 PF01168 Alanine racemase, N-terminal domain CLAN_RS07035 PF00842 Alanine racemase, C-terminal domain CLAN_RS07055 PF02719 Polysaccharide biosynthesis protein CLAN_RS07060 PF00950 ABC 3 transport family CLAN_RS07065 PF00005 ABC transporter CLAN_RS07080 PF00563 EAL domain CLAN_RS07085 PF00484 Carbonic anhydrase CLAN_RS07090 PF00924 Mechanosensitive ion channel CLAN_RS07100 PF03372 Endonuclease/Exonuclease/phosphatase family CLAN_RS07105 PF00884 Sulfatase CLAN_RS07105 PF08019 Phosphoethanolamine transferase EptA/EptB CLAN_RS07115 PF02659 Putative manganese efflux pump CLAN_RS07120 PF03462 PCRF domain CLAN_RS07120 PF00472 RF-1 domain CLAN_RS07125 PF01649 Ribosomal protein S20 CLAN_RS07130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLAN_RS07130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLAN_RS07130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLAN_RS07130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLAN_RS07135 PF01252 Signal peptidase (SPase) II CLAN_RS07145 PF03653 Uncharacterised protein family (UPF0093) CLAN_RS07190 PF00376 MerR family regulatory protein CLAN_RS07190 PF09278 MerR, DNA binding CLAN_RS07195 PF12323 Helix-turn-helix domain CLAN_RS07195 PF01385 Probable transposase CLAN_RS07195 PF07282 Putative transposase DNA-binding domain CLAN_RS07220 PF17757 UvrB interaction domain CLAN_RS07220 PF12344 Ultra-violet resistance protein B CLAN_RS07220 PF02151 UvrB/uvrC motif CLAN_RS07220 PF04851 Type III restriction enzyme, res subunit CLAN_RS07220 PF00271 Helicase conserved C-terminal domain CLAN_RS07250 PF02541 Ppx/GppA phosphatase family CLAN_RS07255 PF01966 HD domain CLAN_RS07255 PF12627 Probable RNA and SrmB- binding site of polymerase A CLAN_RS07255 PF01743 Poly A polymerase head domain CLAN_RS07270 PF00180 Isocitrate/isopropylmalate dehydrogenase CLAN_RS07275 PF00694 Aconitase C-terminal domain CLAN_RS07280 PF03976 Polyphosphate kinase 2 (PPK2) CLAN_RS07290 PF01965 DJ-1/PfpI family CLAN_RS07295 PF00082 Subtilase family CLAN_RS07295 PF12951 Passenger-associated-transport-repeat CLAN_RS07295 PF03797 Autotransporter beta-domain CLAN_RS07300 PF06418 CTP synthase N-terminus CLAN_RS07300 PF00117 Glutamine amidotransferase class-I CLAN_RS07305 PF01368 DHH family CLAN_RS07305 PF02272 DHHA1 domain CLAN_RS07305 PF17768 RecJ OB domain CLAN_RS07305 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CLAN_RS07310 PF06965 Na+/H+ antiporter 1 CLAN_RS07315 PF00920 Dehydratase family CLAN_RS07330 PF00132 Bacterial transferase hexapeptide (six repeats) CLAN_RS07335 PF00460 Flagella basal body rod protein CLAN_RS07335 PF07559 Flagellar basal body protein FlaE CLAN_RS07335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLAN_RS07340 PF03963 Flagellar hook capping protein - N-terminal region CLAN_RS07350 PF03144 Elongation factor Tu domain 2 CLAN_RS07350 PF00009 Elongation factor Tu GTP binding domain CLAN_RS07350 PF00679 Elongation factor G C-terminus CLAN_RS07355 PF00881 Nitroreductase family CLAN_RS07360 PF02511 Thymidylate synthase complementing protein CLAN_RS07365 PF07690 Major Facilitator Superfamily CLAN_RS07430 PF00550 Phosphopantetheine attachment site CLAN_RS07435 PF00550 Phosphopantetheine attachment site CLAN_RS07455 PF02801 Beta-ketoacyl synthase, C-terminal domain CLAN_RS07455 PF00109 Beta-ketoacyl synthase, N-terminal domain CLAN_RS07470 PF02801 Beta-ketoacyl synthase, C-terminal domain CLAN_RS07470 PF00109 Beta-ketoacyl synthase, N-terminal domain CLAN_RS07480 PF04820 Tryptophan halogenase CLAN_RS07490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLAN_RS07490 PF00460 Flagella basal body rod protein CLAN_RS07490 PF07559 Flagellar basal body protein FlaE CLAN_RS07490 PF07196 Flagellin hook IN motif CLAN_RS07495 PF01678 Diaminopimelate epimerase CLAN_RS07500 PF02621 Menaquinone biosynthesis CLAN_RS07505 PF01313 Bacterial export proteins, family 3 CLAN_RS07510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CLAN_RS07515 PF02253 Phospholipase A1 CLAN_RS07520 PF12804 MobA-like NTP transferase domain CLAN_RS07525 PF00330 Aconitase family (aconitate hydratase) CLAN_RS07540 PF02391 MoaE protein CLAN_RS07545 PF01594 AI-2E family transporter CLAN_RS07550 PF10415 Fumarase C C-terminus CLAN_RS07550 PF00206 Lyase CLAN_RS07555 PF03605 Anaerobic c4-dicarboxylate membrane transporter CLAN_RS07570 PF07498 Rho termination factor, N-terminal domain CLAN_RS07570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLAN_RS07570 PF07497 Rho termination factor, RNA-binding domain CLAN_RS07575 PF12169 DNA polymerase III subunits gamma and tau domain III CLAN_RS07575 PF12170 DNA polymerase III tau subunit V interacting with alpha CLAN_RS07580 PF00679 Elongation factor G C-terminus CLAN_RS07580 PF00009 Elongation factor Tu GTP binding domain CLAN_RS07580 PF03144 Elongation factor Tu domain 2 CLAN_RS07580 PF06421 GTP-binding protein LepA C-terminus CLAN_RS07590 PF01361 Tautomerase enzyme CLAN_RS07605 PF00156 Phosphoribosyl transferase domain CLAN_RS07610 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLAN_RS07615 PF00692 dUTPase CLAN_RS07620 PF00364 Biotin-requiring enzyme CLAN_RS07625 PF02785 Biotin carboxylase C-terminal domain CLAN_RS07625 PF00289 Biotin carboxylase, N-terminal domain CLAN_RS07625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLAN_RS07630 PF07196 Flagellin hook IN motif CLAN_RS07630 PF00700 Bacterial flagellin C-terminal helical region CLAN_RS07630 PF00669 Bacterial flagellin N-terminal helical region CLAN_RS07665 PF01595 Cyclin M transmembrane N-terminal domain CLAN_RS07665 PF00571 CBS domain CLAN_RS07665 PF03471 Transporter associated domain CLAN_RS07670 PF02321 Outer membrane efflux protein CLAN_RS07675 PF00873 AcrB/AcrD/AcrF family CLAN_RS07680 PF13533 Biotin-lipoyl like CLAN_RS07690 PF01165 Ribosomal protein S21 CLAN_RS07700 PF01967 MoaC family CLAN_RS07705 PF04359 Protein of unknown function (DUF493) CLAN_RS07710 PF02780 Transketolase, C-terminal domain CLAN_RS07710 PF00456 Transketolase, thiamine diphosphate binding domain CLAN_RS07710 PF02779 Transketolase, pyrimidine binding domain CLAN_RS07715 PF00348 Polyprenyl synthetase CLAN_RS07725 PF02575 YbaB/EbfC DNA-binding family CLAN_RS07730 PF02261 Aspartate decarboxylase CLAN_RS07735 PF02875 Mur ligase family, glutamate ligase domain CLAN_RS07735 PF08245 Mur ligase middle domain CLAN_RS07750 PF01196 Ribosomal protein L17 CLAN_RS07755 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CLAN_RS07755 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CLAN_RS07755 PF01000 RNA polymerase Rpb3/RpoA insert domain CLAN_RS07760 PF01479 S4 domain CLAN_RS07760 PF00163 Ribosomal protein S4/S9 N-terminal domain CLAN_RS07765 PF00411 Ribosomal protein S11 CLAN_RS07770 PF00416 Ribosomal protein S13/S18 CLAN_RS07775 PF00444 Ribosomal protein L36 CLAN_RS07780 PF03063 Prismane/CO dehydrogenase family CLAN_RS07790 PF01176 Translation initiation factor 1A / IF-1 CLAN_RS07795 PF00557 Metallopeptidase family M24 CLAN_RS07800 PF00344 SecY translocase CLAN_RS07805 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CLAN_RS07810 PF03719 Ribosomal protein S5, C-terminal domain CLAN_RS07810 PF00333 Ribosomal protein S5, N-terminal domain CLAN_RS07815 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CLAN_RS07820 PF00347 Ribosomal protein L6 CLAN_RS07825 PF00410 Ribosomal protein S8 CLAN_RS07830 PF00253 Ribosomal protein S14p/S29e CLAN_RS07835 PF00281 Ribosomal protein L5 CLAN_RS07835 PF00673 ribosomal L5P family C-terminus CLAN_RS07840 PF00467 KOW motif CLAN_RS07840 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CLAN_RS07845 PF00238 Ribosomal protein L14p/L23e CLAN_RS07850 PF00366 Ribosomal protein S17 CLAN_RS07855 PF00831 Ribosomal L29 protein CLAN_RS07860 PF00252 Ribosomal protein L16p/L10e CLAN_RS07865 PF07650 KH domain CLAN_RS07865 PF00189 Ribosomal protein S3, C-terminal domain CLAN_RS07870 PF00237 Ribosomal protein L22p/L17e CLAN_RS07875 PF00203 Ribosomal protein S19 CLAN_RS07880 PF03947 Ribosomal Proteins L2, C-terminal domain CLAN_RS07880 PF00181 Ribosomal Proteins L2, RNA binding domain CLAN_RS07885 PF00276 Ribosomal protein L23 CLAN_RS07890 PF00573 Ribosomal protein L4/L1 family CLAN_RS07895 PF00297 Ribosomal protein L3 CLAN_RS07900 PF00338 Ribosomal protein S10p/S20e CLAN_RS07940 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLAN_RS07940 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLAN_RS07950 PF14579 Helix-hairpin-helix motif CLAN_RS07950 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLAN_RS07950 PF02811 PHP domain CLAN_RS07950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLAN_RS07955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLAN_RS07955 PF00672 HAMP domain CLAN_RS07955 PF02743 Cache domain CLAN_RS07965 PF00482 Type II secretion system (T2SS), protein F CLAN_RS07970 PF00437 Type II/IV secretion system protein CLAN_RS07975 PF03958 Bacterial type II/III secretion system short domain CLAN_RS07975 PF00263 Bacterial type II and III secretion system protein CLAN_RS07995 PF00082 Subtilase family CLAN_RS07995 PF03797 Autotransporter beta-domain CLAN_RS07995 PF12951 Passenger-associated-transport-repeat CLAN_RS08020 PF00268 Ribonucleotide reductase, small chain CLAN_RS08035 PF04608 Phosphatidylglycerophosphatase A CLAN_RS08040 PF01747 ATP-sulfurylase CLAN_RS08040 PF14306 PUA-like domain CLAN_RS08045 PF00072 Response regulator receiver domain CLAN_RS08045 PF00486 Transcriptional regulatory protein, C terminal CLAN_RS08050 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLAN_RS08050 PF02542 YgbB family CLAN_RS08055 PF01964 Radical SAM ThiC family CLAN_RS08060 PF03601 Conserved hypothetical protein 698 CLAN_RS08065 PF00117 Glutamine amidotransferase class-I CLAN_RS08065 PF02885 Glycosyl transferase family, helical bundle domain CLAN_RS08065 PF00591 Glycosyl transferase family, a/b domain CLAN_RS08070 PF04715 Anthranilate synthase component I, N terminal region CLAN_RS08070 PF00425 chorismate binding enzyme CLAN_RS08075 PF10609 NUBPL iron-transfer P-loop NTPase CLAN_RS08075 PF01883 Iron-sulfur cluster assembly protein CLAN_RS08080 PF01152 Bacterial-like globin CLAN_RS08090 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLAN_RS08110 PF03193 RsgA GTPase CLAN_RS08125 PF02146 Sir2 family CLAN_RS08155 PF01479 S4 domain CLAN_RS08155 PF00849 RNA pseudouridylate synthase CLAN_RS08160 PF01380 SIS domain CLAN_RS08160 PF00571 CBS domain CLAN_RS08165 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLAN_RS08165 PF00753 Metallo-beta-lactamase superfamily CLAN_RS08165 PF17770 Ribonuclease J C-terminal domain CLAN_RS08170 PF00398 Ribosomal RNA adenine dimethylase CLAN_RS08175 PF00977 Histidine biosynthesis protein CLAN_RS08185 PF04055 Radical SAM superfamily CLAN_RS08190 PF00849 RNA pseudouridylate synthase CLAN_RS08195 PF00206 Lyase CLAN_RS08195 PF10397 Adenylosuccinate lyase C-terminus CLAN_RS08200 PF00317 Ribonucleotide reductase, all-alpha domain CLAN_RS08200 PF02867 Ribonucleotide reductase, barrel domain CLAN_RS08200 PF03477 ATP cone domain CLAN_RS08205 PF02075 Crossover junction endodeoxyribonuclease RuvC