locus-tag	class	description
CINF_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CINF_RS00010	COG0592	DNA-directed DNA polymerase activity
CINF_RS00015	COG0187	DNA topoisomerase II activity
CINF_RS00045	COG1157	protein secretion by the type III secretion system
CINF_RS00055	COG0544	peptidyl-prolyl cis-trans isomerase activity
CINF_RS00060	COG0740	serine-type endopeptidase activity
CINF_RS00070	COG0242	peptide deformylase activity
CINF_RS00075	COG0606	chelatase, subunit chli
CINF_RS00125	COG0372	Belongs to the citrate synthase family
CINF_RS00135	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CINF_RS00140	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CINF_RS00145	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CINF_RS00150	COG0717	Belongs to the dCTP deaminase family
CINF_RS00155	COG0511	ligase activity, forming carbon-carbon bonds
CINF_RS00160	COG0439	Biotin carboxylase
CINF_RS00165	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CINF_RS00175	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CINF_RS00185	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CINF_RS00220	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CINF_RS00225	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CINF_RS00240	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CINF_RS00245	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CINF_RS00250	COG0825	malonyl-CoA metabolic process
CINF_RS00255	COG3842	ATPase activity
CINF_RS00260	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CINF_RS00280	COG0166	Belongs to the GPI family
CINF_RS00290	COG0783	Belongs to the Dps family
CINF_RS00295	COG1064	alcohol dehydrogenase
CINF_RS00335	COG1064	alcohol dehydrogenase
CINF_RS00355	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CINF_RS00370	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CINF_RS00375	COG1077	Cell shape determining protein MreB Mrl
CINF_RS00385	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CINF_RS00395	COG0243	molybdopterin cofactor binding
CINF_RS00400	COG0437	4 iron, 4 sulfur cluster binding
CINF_RS00405	COG0348	domain, Protein
CINF_RS00410	COG3043	anaerobic respiration
CINF_RS00445	COG0720	synthase
CINF_RS00450	COG0602	queuosine metabolic process
CINF_RS00465	COG0268	Binds directly to 16S ribosomal RNA
CINF_RS00470	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CINF_RS00475	COG1126	abc transporter atp-binding protein
CINF_RS00485	COG0642	Histidine kinase
CINF_RS00490	COG0745	RESPONSE REGULATOR receiver
CINF_RS00500	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CINF_RS00505	COG0450	alkyl hydroperoxide reductase
CINF_RS00520	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CINF_RS00525	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CINF_RS00550	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CINF_RS00560	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CINF_RS00565	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CINF_RS00570	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CINF_RS00575	COG0200	Binds to the 23S rRNA
CINF_RS00580	COG0201	protein transport
CINF_RS00585	COG0024	Methionine aminopeptidase
CINF_RS00590	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CINF_RS00615	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CINF_RS00640	COG1528	Iron-storage protein
CINF_RS00645	COG0859	PFAM glycosyl transferase family 9
CINF_RS00650	COG0463	Glycosyl transferase, family 2
CINF_RS00680	COG0642	Histidine kinase
CINF_RS00685	COG0745	RESPONSE REGULATOR receiver
CINF_RS00725	COG0129	dihydroxy-acid dehydratase activity
CINF_RS00730	COG5002	protein histidine kinase activity
CINF_RS00740	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CINF_RS00745	COG0581	inorganic phosphate transmembrane transporter activity
CINF_RS00750	COG0573	inorganic phosphate transmembrane transporter activity
CINF_RS00770	COG1733	regulation of RNA biosynthetic process
CINF_RS00775	COG0539	negative regulation of cytoplasmic translation
CINF_RS00775	COG1185	polyribonucleotide nucleotidyltransferase activity
CINF_RS00785	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CINF_RS00790	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CINF_RS00800	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CINF_RS00805	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CINF_RS00810	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CINF_RS00815	COG0037	tRNA processing
CINF_RS00820	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CINF_RS00825	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CINF_RS00835	COG0540	Belongs to the ATCase OTCase family
CINF_RS00840	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CINF_RS00845	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CINF_RS00850	COG2184	nucleotidyltransferase activity
CINF_RS00870	COG0708	Exodeoxyribonuclease III
CINF_RS00880	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CINF_RS00885	COG0519	Catalyzes the synthesis of GMP from XMP
CINF_RS00900	COG0322	excinuclease ABC activity
CINF_RS00905	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CINF_RS00910	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CINF_RS00915	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CINF_RS00930	COG0731	radical SAM domain protein
CINF_RS00935	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CINF_RS00955	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CINF_RS00960	COG2204	response regulator
CINF_RS00975	COG0716	FMN binding
CINF_RS00980	COG1854	S-ribosylhomocysteine lyase activity
CINF_RS00985	COG0501	Belongs to the peptidase M48B family
CINF_RS01000	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CINF_RS01010	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CINF_RS01015	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CINF_RS01020	COG0629	single-stranded DNA binding
CINF_RS01025	COG0360	Binds together with S18 to 16S ribosomal RNA
CINF_RS01055	COG0557	exoribonuclease II activity
CINF_RS01065	COG1408	metallophosphoesterase
CINF_RS01070	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CINF_RS01075	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CINF_RS01095	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CINF_RS01115	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CINF_RS01120	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CINF_RS01135	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CINF_RS01155	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
CINF_RS01175	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
CINF_RS01195	COG0859	PFAM glycosyl transferase family 9
CINF_RS01200	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CINF_RS01205	COG0416	fatty acid biosynthetic process
CINF_RS01210	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CINF_RS01220	COG0105	UTP biosynthetic process
CINF_RS01225	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CINF_RS01230	COG0004	ammonium transporteR
CINF_RS01240	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CINF_RS01245	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CINF_RS01250	COG0083	homoserine kinase activity
CINF_RS01265	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CINF_RS01280	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CINF_RS01300	COG2005	Transcriptional regulator
CINF_RS01305	COG2853	Lipoprotein
CINF_RS01335	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CINF_RS01340	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CINF_RS01340	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CINF_RS01345	COG1192	Involved in chromosome partitioning
CINF_RS01350	COG1475	DNA binding
CINF_RS01360	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CINF_RS01365	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CINF_RS01370	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CINF_RS01375	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CINF_RS01380	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CINF_RS01385	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CINF_RS01390	COG0811	peptide transport
CINF_RS01395	COG0848	biopolymer transport protein
CINF_RS01405	COG0823	Involved in the tonB-independent uptake of proteins
CINF_RS01420	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CINF_RS01435	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CINF_RS01445	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CINF_RS01450	COG0287	Prephenate dehydrogenase
CINF_RS01540	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CINF_RS01580	COG0427	acetyl-CoA hydrolase
CINF_RS01585	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CINF_RS01590	COG0298	carbon dioxide binding
CINF_RS01600	COG0409	Hydrogenase expression formation protein
CINF_RS01615	COG2244	polysaccharide biosynthetic process
CINF_RS01625	COG0438	transferase activity, transferring glycosyl groups
CINF_RS01630	COG0438	transferase activity, transferring glycosyl groups
CINF_RS01635	COG1333	cytochrome c biogenesis protein
CINF_RS01635	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CINF_RS01640	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CINF_RS01650	COG0758	DNA mediated transformation
CINF_RS01660	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CINF_RS01660	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
CINF_RS01665	COG2255	four-way junction helicase activity
CINF_RS01680	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CINF_RS01695	COG2833	Protein of unknown function (DUF455)
CINF_RS01725	COG2353	YceI-like domain
CINF_RS01755	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CINF_RS01760	COG0113	porphobilinogen synthase activity
CINF_RS01765	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CINF_RS01790	COG2814	Major facilitator Superfamily
CINF_RS01795	COG0358	DNA primase activity
CINF_RS01800	COG1287	oligosaccharyl transferase activity
CINF_RS01810	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CINF_RS01815	COG0372	Belongs to the citrate synthase family
CINF_RS01820	COG2079	MmgE PrpD family protein
CINF_RS01830	COG0428	transporter
CINF_RS01855	COG0357	Ribosomal RNA small subunit methyltransferase G
CINF_RS01860	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CINF_RS01885	COG0688	phosphatidylethanolamine metabolic process
CINF_RS01890	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CINF_RS01905	COG0723	plastoquinol--plastocyanin reductase activity
CINF_RS01935	COG1283	sodium-dependent phosphate transmembrane transporter activity
CINF_RS01940	COG1696	Membrane protein involved in D-alanine export
CINF_RS01955	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CINF_RS01965	COG0107	imidazoleglycerol-phosphate synthase activity
CINF_RS01975	COG0288	reversible hydration of carbon dioxide
CINF_RS01985	COG0471	metal ion transport
CINF_RS01995	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CINF_RS02005	COG2171	N-acyltransferase activity
CINF_RS02015	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CINF_RS02015	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CINF_RS02020	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CINF_RS02050	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CINF_RS02075	COG0505	Belongs to the CarA family
CINF_RS02100	COG3951	Flagellar rod assembly protein muramidase FlgJ
CINF_RS02105	COG1706	bacterial-type flagellum-dependent cell motility
CINF_RS02125	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CINF_RS02130	COG3842	ATPase activity
CINF_RS02135	COG1178	ABC-type Fe3 transport system permease component
CINF_RS02140	COG1840	ABC-type Fe3 transport system, periplasmic component
CINF_RS02145	COG3301	Polysulphide reductase, NrfD
CINF_RS02155	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CINF_RS02160	COG1086	Polysaccharide biosynthesis protein
CINF_RS02175	COG1334	flagellar protein FlaG
CINF_RS02180	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CINF_RS02215	COG2195	Cleaves the N-terminal amino acid of tripeptides
CINF_RS02220	COG1921	L-seryl-tRNASec selenium transferase activity
CINF_RS02230	COG1971	Probably functions as a manganese efflux pump
CINF_RS02255	COG0191	fructose-bisphosphate aldolase activity
CINF_RS02260	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CINF_RS02270	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CINF_RS02305	COG0101	tRNA pseudouridine synthase activity
CINF_RS02310	COG0730	response to heat
CINF_RS02320	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CINF_RS02340	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CINF_RS02345	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CINF_RS02350	COG0012	GTP binding
CINF_RS02355	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CINF_RS02365	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CINF_RS02375	COG0698	ribose 5-phosphate isomerase
CINF_RS02380	COG0681	Belongs to the peptidase S26 family
CINF_RS02385	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CINF_RS02395	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CINF_RS02435	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CINF_RS02445	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CINF_RS02450	COG1160	GTP binding
CINF_RS02455	COG0751	glycine-tRNA ligase activity
CINF_RS02465	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CINF_RS02470	COG1295	ribonuclease BN
CINF_RS02475	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CINF_RS02480	COG4786	Flagellar basal body rod
CINF_RS02485	COG4786	Flagellar basal body rod
CINF_RS02495	COG3263	regulation of cellular component size
CINF_RS02515	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CINF_RS02525	COG0754	glutathionylspermidine amidase activity
CINF_RS02530	COG0163	prenyltransferase activity
CINF_RS02535	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CINF_RS02580	COG1013	pyruvate-flavodoxin oxidoreductase activity
CINF_RS02580	COG0674	pyruvate-flavodoxin oxidoreductase activity
CINF_RS02580	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CINF_RS02580	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CINF_RS02610	COG1815	bacterial-type flagellum-dependent cell motility
CINF_RS02630	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CINF_RS02635	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CINF_RS02640	COG0210	DNA helicase
CINF_RS02645	COG0824	Thioesterase
CINF_RS02685	COG0174	glutamine synthetase
CINF_RS02695	COG1045	serine acetyltransferase
CINF_RS02700	COG1166	arginine decarboxylase activity
CINF_RS02705	COG0124	histidyl-tRNA synthetase
CINF_RS02710	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CINF_RS02715	COG0215	cysteine-tRNA ligase activity
CINF_RS02720	COG0352	thiamine-phosphate diphosphorylase activity
CINF_RS02720	COG0351	phosphomethylpyrimidine kinase
CINF_RS02725	COG0840	transmembrane signaling receptor activity
CINF_RS02730	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CINF_RS02740	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CINF_RS02745	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CINF_RS02750	COG1959	2 iron, 2 sulfur cluster binding
CINF_RS02765	COG0745	RESPONSE REGULATOR receiver
CINF_RS02775	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CINF_RS02780	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CINF_RS02790	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CINF_RS02795	COG0131	Imidazoleglycerol-phosphate dehydratase
CINF_RS02800	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CINF_RS02805	COG1196	nuclear chromosome segregation
CINF_RS02805	COG0739	heme binding
CINF_RS02805	COG0741	lytic transglycosylase activity
CINF_RS02810	COG0084	hydrolase, TatD family'
CINF_RS02815	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CINF_RS02820	COG0563	adenylate kinase activity
CINF_RS02830	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CINF_RS02835	COG1607	acyl-coa hydrolase
CINF_RS02845	COG0438	transferase activity, transferring glycosyl groups
CINF_RS02850	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CINF_RS02855	COG0110	maltose O-acetyltransferase activity
CINF_RS02860	COG0303	'Molybdopterin
CINF_RS02865	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CINF_RS02870	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CINF_RS02890	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CINF_RS02900	COG1053	succinate dehydrogenase
CINF_RS02905	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CINF_RS02910	COG1684	flagellar biosynthetic protein fliR
CINF_RS02925	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CINF_RS02950	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CINF_RS02970	COG0848	biopolymer transport protein
CINF_RS02975	COG0811	peptide transport
CINF_RS02985	COG4771	TonB-dependent receptor
CINF_RS03025	COG0582	viral genome integration into host DNA
CINF_RS03040	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CINF_RS03075	COG4962	Type ii secretion system protein e
CINF_RS03190	COG0629	single-stranded DNA binding
CINF_RS03245	COG0037	tRNA processing
CINF_RS03250	COG1122	ATPase activity
CINF_RS03280	COG2121	Domain of unknown function (DUF374)
CINF_RS03295	COG0195	Participates in both transcription termination and antitermination
CINF_RS03320	COG1136	(ABC) transporter
CINF_RS03325	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CINF_RS03330	COG0052	Belongs to the universal ribosomal protein uS2 family
CINF_RS03335	COG1253	flavin adenine dinucleotide binding
CINF_RS03340	COG0135	phosphoribosylanthranilate isomerase activity
CINF_RS03340	COG0134	indole-3-glycerol-phosphate synthase activity
CINF_RS03360	COG2076	Multidrug Resistance protein
CINF_RS03365	COG2076	Multidrug Resistance protein
CINF_RS03370	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CINF_RS03375	COG0745	RESPONSE REGULATOR receiver
CINF_RS03380	COG2264	protein methyltransferase activity
CINF_RS03385	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CINF_RS03395	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CINF_RS03405	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CINF_RS03405	COG0674	pyruvate-flavodoxin oxidoreductase activity
CINF_RS03410	COG3962	Belongs to the TPP enzyme family
CINF_RS03420	COG0442	prolyl-tRNA aminoacylation
CINF_RS03425	COG1538	Outer membrane efflux protein
CINF_RS03430	COG0577	efflux transmembrane transporter activity
CINF_RS03430	COG1136	(ABC) transporter
CINF_RS03435	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CINF_RS03445	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CINF_RS03450	COG0492	ferredoxin-NADP+ reductase activity
CINF_RS03455	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CINF_RS03470	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CINF_RS03480	COG0772	Belongs to the SEDS family
CINF_RS03485	COG0564	pseudouridine synthase activity
CINF_RS03495	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CINF_RS03500	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CINF_RS03520	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CINF_RS03525	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CINF_RS03530	COG1663	tetraacyldisaccharide 4'-kinase activity
CINF_RS03535	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CINF_RS03540	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CINF_RS03545	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CINF_RS03550	COG0788	formyltetrahydrofolate deformylase activity
CINF_RS03560	COG1088	dTDP-glucose 4,6-dehydratase activity
CINF_RS03565	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
CINF_RS03585	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CINF_RS03600	COG0672	)-iron permease
CINF_RS03605	COG0739	heme binding
CINF_RS03620	COG2962	Rard protein
CINF_RS03625	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CINF_RS03630	COG1028	Short-chain dehydrogenase reductase Sdr
CINF_RS03635	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CINF_RS03640	COG0612	Peptidase, M16
CINF_RS03645	COG1757	Na H antiporter
CINF_RS03650	COG1086	Polysaccharide biosynthesis protein
CINF_RS03655	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CINF_RS03660	COG1959	2 iron, 2 sulfur cluster binding
CINF_RS03665	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CINF_RS03670	COG0501	Belongs to the peptidase M48B family
CINF_RS03675	COG1704	LemA family
CINF_RS03680	COG1027	Aspartate ammonia-lyase
CINF_RS03690	COG2267	carboxylic ester hydrolase activity
CINF_RS03695	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CINF_RS03705	COG0356	it plays a direct role in the translocation of protons across the membrane
CINF_RS03715	COG0352	thiamine-phosphate diphosphorylase activity
CINF_RS03725	COG1083	cytidylyl-transferase
CINF_RS03735	COG0181	hydroxymethylbilane synthase activity
CINF_RS03745	COG0728	peptidoglycan biosynthetic process
CINF_RS03750	COG0528	UMP kinase activity
CINF_RS03765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CINF_RS03765	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CINF_RS03770	COG0860	N-Acetylmuramoyl-L-alanine amidase
CINF_RS03780	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CINF_RS03785	COG2011	ABC-type metal ion transport system permease component
CINF_RS03790	COG2176	DNA-directed DNA polymerase activity
CINF_RS03795	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CINF_RS03800	COG0750	zinc metalloprotease
CINF_RS03805	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CINF_RS03810	COG0521	Mo-molybdopterin cofactor biosynthetic process
CINF_RS03835	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CINF_RS03840	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CINF_RS03855	COG0250	Participates in transcription elongation, termination and antitermination
CINF_RS03860	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CINF_RS03865	COG0081	regulation of translation
CINF_RS03870	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CINF_RS03875	COG0222	ribosome binding
CINF_RS03880	COG0085	RNA polymerase activity
CINF_RS03885	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CINF_RS03890	COG1442	glycosyl transferase family 8
CINF_RS03890	COG1216	Glycosyl transferase, family 2
CINF_RS03905	COG0579	oxidoreductase
CINF_RS03910	COG0612	Peptidase, M16
CINF_RS03915	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CINF_RS03925	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CINF_RS03930	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CINF_RS03930	COG1215	transferase activity, transferring glycosyl groups
CINF_RS03940	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CINF_RS03950	COG0134	indole-3-glycerol-phosphate synthase activity
CINF_RS03955	COG2860	membrane
CINF_RS03960	COG0586	Pfam SNARE associated Golgi protein
CINF_RS03965	COG0303	'Molybdopterin
CINF_RS03980	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CINF_RS03985	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CINF_RS04000	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CINF_RS04010	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CINF_RS04015	COG0305	Participates in initiation and elongation during chromosome replication
CINF_RS04020	COG1132	(ABC) transporter
CINF_RS04025	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CINF_RS04035	COG0484	heat shock protein binding
CINF_RS04040	COG1196	nuclear chromosome segregation
CINF_RS04040	COG1674	ftsk spoiiie
CINF_RS04045	COG0436	Aminotransferase
CINF_RS04050	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CINF_RS04075	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CINF_RS04085	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CINF_RS04090	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CINF_RS04110	COG0440	acetolactate synthase activity
CINF_RS04115	COG0028	Belongs to the TPP enzyme family
CINF_RS04120	COG0167	dihydroorotate dehydrogenase activity
CINF_RS04140	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CINF_RS04165	COG2217	Heavy metal translocating P-type atpase
CINF_RS04180	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CINF_RS04180	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CINF_RS04185	COG4310	Domain of unknown function (DUF2172)
CINF_RS04195	COG2423	ornithine cyclodeaminase activity
CINF_RS04220	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CINF_RS04230	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CINF_RS04245	COG3118	belongs to the thioredoxin family
CINF_RS04250	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CINF_RS04255	COG0228	four-way junction DNA binding
CINF_RS04265	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CINF_RS04270	COG0336	Belongs to the RNA methyltransferase TrmD family
CINF_RS04275	COG0335	large ribosomal subunit rRNA binding
CINF_RS04280	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CINF_RS04285	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CINF_RS04290	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CINF_RS04295	COG0805	protein transport
CINF_RS04300	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CINF_RS04315	COG1193	negative regulation of DNA recombination
CINF_RS04320	COG1902	pentaerythritol trinitrate reductase activity
CINF_RS04330	COG0564	pseudouridine synthase activity
CINF_RS04345	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CINF_RS04350	COG0752	glycyl-tRNA synthetase alpha subunit
CINF_RS04355	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CINF_RS04365	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CINF_RS04375	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CINF_RS04380	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CINF_RS04385	COG1137	ATPase activity
CINF_RS04390	COG0802	atpase or kinase
CINF_RS04395	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CINF_RS04400	COG0776	regulation of translation
CINF_RS04405	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CINF_RS04410	COG0772	Belongs to the SEDS family
CINF_RS04415	COG0556	nucleotide-excision repair
CINF_RS04425	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CINF_RS04545	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CINF_RS04550	COG0137	argininosuccinate synthase activity
CINF_RS04555	COG1942	4-Oxalocrotonate Tautomerase
CINF_RS04590	COG3287	FIST C domain
CINF_RS04590	COG2200	EAL domain
CINF_RS04590	COG2199	diguanylate cyclase activity
CINF_RS04615	COG2165	general secretion pathway protein
CINF_RS04635	COG1136	(ABC) transporter
CINF_RS04705	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CINF_RS04735	COG0066	3-isopropylmalate dehydratase activity
CINF_RS04740	COG0473	3-isopropylmalate dehydrogenase activity
CINF_RS04755	COG0617	tRNA 3'-terminal CCA addition
CINF_RS04760	COG0534	Mate efflux family protein
CINF_RS04770	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CINF_RS04770	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CINF_RS04790	COG2239	Acts as a magnesium transporter
CINF_RS04795	COG0739	heme binding
CINF_RS04805	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CINF_RS04815	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CINF_RS04820	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CINF_RS04825	COG1338	Plays a role in the flagellum-specific transport system
CINF_RS04830	COG2957	Belongs to the agmatine deiminase family
CINF_RS04850	COG0252	asparaginase activity
CINF_RS04860	COG3706	GGDEF domain
CINF_RS04870	COG0495	leucyl-tRNA aminoacylation
CINF_RS04880	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CINF_RS04885	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CINF_RS04890	COG1862	Preprotein translocase
CINF_RS04895	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CINF_RS04900	COG1999	signal sequence binding
CINF_RS04905	COG4770	biotin carboxylase activity
CINF_RS04925	COG1126	abc transporter atp-binding protein
CINF_RS04930	COG0765	amino acid transport
CINF_RS04935	COG0642	Histidine kinase
CINF_RS04940	COG1464	Belongs to the NlpA lipoprotein family
CINF_RS04945	COG0494	nUDIX hydrolase
CINF_RS04950	COG0527	aspartate kinase activity
CINF_RS04965	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CINF_RS04975	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CINF_RS04980	COG0727	PFAM Uncharacterised protein family (UPF0153)
CINF_RS04985	COG0114	fumarate hydratase activity
CINF_RS04995	COG3610	response to peptide
CINF_RS05000	COG1183	phosphatidylcholine synthase activity
CINF_RS05005	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CINF_RS05015	COG0840	transmembrane signaling receptor activity
CINF_RS05020	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CINF_RS05025	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CINF_RS05045	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CINF_RS05050	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CINF_RS05055	COG0309	Hydrogenase expression formation protein (HypE)
CINF_RS05060	COG0375	protein maturation
CINF_RS05080	COG0786	glutamate:sodium symporter activity
CINF_RS05085	COG0326	Molecular chaperone. Has ATPase activity
CINF_RS05110	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CINF_RS05120	COG0739	heme binding
CINF_RS05125	COG0285	dihydrofolate synthase activity
CINF_RS05135	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CINF_RS05145	COG0840	transmembrane signaling receptor activity
CINF_RS05145	COG3290	protein histidine kinase activity
CINF_RS05155	COG0275	rRNA processing
CINF_RS05185	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CINF_RS05190	COG2089	acid synthase
CINF_RS05230	COG2020	methyltransferase activity
CINF_RS05245	COG0477	Major facilitator Superfamily
CINF_RS05455	COG2046	Belongs to the sulfate adenylyltransferase family
CINF_RS05460	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CINF_RS05480	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CINF_RS05485	COG0571	ribonuclease III activity
CINF_RS05490	COG0746	molybdenum cofactor guanylyltransferase activity
CINF_RS05500	COG0628	permease
CINF_RS05510	COG0517	IMP dehydrogenase activity
CINF_RS05510	COG0516	GMP reductase activity
CINF_RS05515	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CINF_RS05520	COG0575	Belongs to the CDS family
CINF_RS05525	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CINF_RS05530	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CINF_RS05540	COG1987	bacterial-type flagellum assembly
CINF_RS05550	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CINF_RS05555	COG1058	Belongs to the CinA family
CINF_RS05555	COG1546	Belongs to the CinA family
CINF_RS05560	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CINF_RS05565	COG0154	amidase activity
CINF_RS05595	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CINF_RS05600	COG1028	Short-chain dehydrogenase reductase Sdr
CINF_RS05615	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CINF_RS05615	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CINF_RS05620	COG0482	sulfurtransferase activity
CINF_RS05625	COG1611	Belongs to the LOG family
CINF_RS05640	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CINF_RS05645	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CINF_RS05650	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CINF_RS05655	COG4797	methyltransferase
CINF_RS05655	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CINF_RS05660	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CINF_RS05700	COG0693	protein deglycase activity
CINF_RS05705	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CINF_RS05715	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CINF_RS05725	COG0039	L-malate dehydrogenase activity
CINF_RS05740	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CINF_RS05745	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CINF_RS05750	COG0204	Acyl-transferase
CINF_RS05760	COG0047	phosphoribosylformylglycinamidine synthase activity
CINF_RS05765	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CINF_RS05770	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CINF_RS05775	COG0793	Belongs to the peptidase S41A family
CINF_RS05780	COG0542	response to heat
CINF_RS05800	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CINF_RS05810	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CINF_RS05820	COG0733	neurotransmitter:sodium symporter activity
CINF_RS05825	COG0501	Belongs to the peptidase M48B family
CINF_RS05830	COG2890	protein-(glutamine-N5) methyltransferase activity
CINF_RS05830	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CINF_RS05835	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CINF_RS05840	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CINF_RS05845	COG0736	holo-[acyl-carrier-protein] synthase activity
CINF_RS05850	COG1580	Controls the rotational direction of flagella during chemotaxis
CINF_RS05855	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CINF_RS05870	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CINF_RS05875	COG0594	ribonuclease P activity
CINF_RS05880	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CINF_RS05885	COG0706	membrane insertase activity
CINF_RS05895	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CINF_RS05900	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CINF_RS05910	COG0049	tRNA binding
CINF_RS05915	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CINF_RS05950	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CINF_RS05955	COG1049	propionate catabolic process, 2-methylcitrate cycle
CINF_RS05960	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CINF_RS05970	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CINF_RS05980	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CINF_RS05995	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CINF_RS06000	COG4221	oxidoreductase activity
CINF_RS06005	COG0343	queuine tRNA-ribosyltransferase activity
CINF_RS06010	COG0438	transferase activity, transferring glycosyl groups
CINF_RS06015	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CINF_RS06035	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CINF_RS06040	COG0642	Histidine kinase
CINF_RS06045	COG0745	RESPONSE REGULATOR receiver
CINF_RS06050	COG0484	heat shock protein binding
CINF_RS06060	COG0439	Biotin carboxylase
CINF_RS06070	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CINF_RS06075	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CINF_RS06080	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CINF_RS06085	COG0733	neurotransmitter:sodium symporter activity
CINF_RS06090	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CINF_RS06095	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CINF_RS06100	COG0284	orotidine-5'-phosphate decarboxylase activity
CINF_RS06115	COG0582	viral genome integration into host DNA
CINF_RS06240	COG0477	Major facilitator Superfamily
CINF_RS06260	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CINF_RS06405	COG2176	DNA-directed DNA polymerase activity
CINF_RS06505	COG1968	undecaprenyl-diphosphatase activity
CINF_RS06510	COG0352	thiamine-phosphate diphosphorylase activity
CINF_RS06520	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CINF_RS06535	COG0500	methyltransferase
CINF_RS06545	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CINF_RS06550	COG0849	cell division
CINF_RS06555	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CINF_RS06565	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CINF_RS06575	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CINF_RS06585	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CINF_RS06590	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CINF_RS06595	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CINF_RS06600	COG2890	protein-(glutamine-N5) methyltransferase activity
CINF_RS06605	COG0196	riboflavin kinase activity
CINF_RS06615	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CINF_RS06625	COG1776	CheC inhibitor of MCP methylation
CINF_RS06625	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CINF_RS06635	COG1418	mRNA catabolic process
CINF_RS06645	COG0552	protein localization to endoplasmic reticulum
CINF_RS06650	COG2257	FlhB HrpN YscU SpaS Family
CINF_RS06660	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CINF_RS06675	COG0653	protein targeting
CINF_RS06710	COG0280	phosphate acetyltransferase
CINF_RS06725	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CINF_RS06730	COG3848	Pyruvate phosphate dikinase
CINF_RS06730	COG0574	Belongs to the PEP-utilizing enzyme family
CINF_RS06735	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CINF_RS06740	COG1213	nucleotidyl transferase
CINF_RS06745	COG0529	Catalyzes the synthesis of activated sulfate
CINF_RS06765	COG1454	alcohol dehydrogenase
CINF_RS06770	COG0582	viral genome integration into host DNA
CINF_RS06780	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CINF_RS06785	COG0484	heat shock protein binding
CINF_RS06790	COG0789	Transcriptional regulator
CINF_RS06795	COG3278	Belongs to the heme-copper respiratory oxidase family
CINF_RS06835	COG0243	molybdopterin cofactor binding
CINF_RS06840	COG0243	molybdopterin cofactor binding
CINF_RS06840	COG3383	formate dehydrogenase (NAD+) activity
CINF_RS06845	COG0437	4 iron, 4 sulfur cluster binding
CINF_RS06855	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CINF_RS06865	COG0632	four-way junction helicase activity
CINF_RS06870	COG1181	Belongs to the D-alanine--D-alanine ligase family
CINF_RS06885	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CINF_RS06895	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CINF_RS06900	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CINF_RS06905	COG0537	adenosine 5'-monophosphoramidase activity
CINF_RS06910	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CINF_RS06915	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CINF_RS06915	COG0072	phenylalanine-tRNA ligase activity
CINF_RS06920	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CINF_RS06925	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CINF_RS06935	COG0840	transmembrane signaling receptor activity
CINF_RS06950	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CINF_RS06955	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CINF_RS06960	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CINF_RS06965	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CINF_RS06970	COG0459	protein refolding
CINF_RS07045	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CINF_RS07055	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CINF_RS07070	COG2022	thiamine diphosphate biosynthetic process
CINF_RS07075	COG1420	regulation of RNA biosynthetic process
CINF_RS07080	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CINF_RS07085	COG0443	Heat shock 70 kDa protein
CINF_RS07095	COG0765	amino acid transport
CINF_RS07100	COG1126	abc transporter atp-binding protein
CINF_RS07105	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CINF_RS07110	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CINF_RS07130	COG1074	ATP-dependent DNA helicase activity
CINF_RS07165	COG2404	hydrolase activity, acting on ester bonds
CINF_RS07170	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CINF_RS07175	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CINF_RS07180	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CINF_RS07190	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CINF_RS07215	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
CINF_RS07245	COG4773	Receptor
CINF_RS07255	COG0315	cyclic pyranopterin monophosphate synthase activity
CINF_RS07260	COG0358	DNA primase activity
CINF_RS07305	COG1187	pseudouridine synthase activity
CINF_RS07310	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CINF_RS07310	COG0517	IMP dehydrogenase activity
CINF_RS07315	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CINF_RS07320	COG1360	Flagellar Motor Protein
CINF_RS07325	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CINF_RS07330	COG4139	cobalamin transport
CINF_RS07355	COG0642	Histidine kinase
CINF_RS07370	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CINF_RS07375	COG0445	tRNA wobble uridine modification
CINF_RS07380	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CINF_RS07390	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CINF_RS07395	COG0492	ferredoxin-NADP+ reductase activity
CINF_RS07400	COG3118	belongs to the thioredoxin family
CINF_RS07405	COG0792	nuclease activity
CINF_RS07410	COG0460	homoserine dehydrogenase
CINF_RS07415	COG0436	Aminotransferase
CINF_RS07425	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CINF_RS07440	COG0019	diaminopimelate decarboxylase activity
CINF_RS07450	COG2264	protein methyltransferase activity
CINF_RS07455	COG0481	GTPase activity
CINF_RS07460	COG0252	asparaginase activity
CINF_RS07470	COG2814	Major facilitator Superfamily
CINF_RS07490	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CINF_RS07495	COG0233	cytoplasmic translational termination
CINF_RS07500	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CINF_RS07505	COG0670	Belongs to the BI1 family
CINF_RS07520	COG0140	phosphoribosyl-ATP diphosphatase activity
CINF_RS07520	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CINF_RS07525	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CINF_RS07530	COG1966	Carbon starvation protein
CINF_RS07575	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CINF_RS07585	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CINF_RS07605	COG0497	DNA recombination
CINF_RS07615	COG2814	Major facilitator Superfamily
CINF_RS07620	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CINF_RS07630	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
CINF_RS07630	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CINF_RS07635	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CINF_RS07655	COG1252	NADH dehydrogenase
CINF_RS07660	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CINF_RS07665	COG1570	exodeoxyribonuclease VII activity
CINF_RS07680	COG0489	protein tyrosine kinase activity
CINF_RS07690	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CINF_RS07695	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CINF_RS07700	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CINF_RS07705	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CINF_RS07710	COG0202	RNA polymerase activity
CINF_RS07715	COG0203	ribosomal protein L17
CINF_RS07720	COG0316	Belongs to the HesB IscA family
CINF_RS07720	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CINF_RS07740	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CINF_RS07740	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CINF_RS07745	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CINF_RS07760	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CINF_RS07790	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CINF_RS07815	COG0726	polysaccharide deacetylase
CINF_RS07820	COG0438	transferase activity, transferring glycosyl groups
CINF_RS07825	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CINF_RS07830	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
CINF_RS07835	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CINF_RS07835	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CINF_RS07840	COG0359	binds to the 23S rRNA
CINF_RS07845	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CINF_RS07850	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CINF_RS07860	COG0438	transferase activity, transferring glycosyl groups
CINF_RS07880	COG0859	PFAM glycosyl transferase family 9
CINF_RS07885	COG0328	RNA-DNA hybrid ribonuclease activity
CINF_RS07905	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CINF_RS07910	COG0149	triose-phosphate isomerase activity
CINF_RS07915	COG0126	phosphoglycerate kinase activity
CINF_RS07920	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CINF_RS07925	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CINF_RS07930	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CINF_RS07935	COG3787	Belongs to the UPF0306 family
CINF_RS07940	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CINF_RS07945	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CINF_RS07965	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CINF_RS07985	COG0585	pseudouridine synthase activity
CINF_RS07995	COG0156	8-amino-7-oxononanoate synthase activity
CINF_RS08005	COG4106	trans-aconitate 2-methyltransferase activity
CINF_RS08010	COG1858	cytochrome C peroxidase
CINF_RS08015	COG2199	diguanylate cyclase activity
CINF_RS08015	COG2200	EAL domain
CINF_RS08020	COG1301	dicarboxylic acid transport
CINF_RS08025	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CINF_RS08045	COG0529	Catalyzes the synthesis of activated sulfate
CINF_RS08065	COG0254	rRNA binding
CINF_RS08070	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CINF_RS08110	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CINF_RS08115	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CINF_RS08115	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CINF_RS08135	COG0668	transmembrane transport
CINF_RS08145	COG0779	Required for maturation of 30S ribosomal subunits
CINF_RS08170	COG0251	oxidation-reduction process
CINF_RS08175	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CINF_RS08190	COG0193	aminoacyl-tRNA hydrolase activity
CINF_RS08195	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CINF_RS08205	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CINF_RS08215	COG0835	chemotaxis
CINF_RS08220	COG0784	Response regulator, receiver
CINF_RS08220	COG2198	Histidine kinase
CINF_RS08220	COG0643	Histidine kinase
CINF_RS08225	COG0784	Response regulator, receiver
CINF_RS08225	COG0835	chemotaxis
CINF_RS08240	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CINF_RS08250	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CINF_RS08255	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CINF_RS08285	COG0629	single-stranded DNA binding
CINF_RS08295	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CINF_RS08335	COG4962	Type ii secretion system protein e
CINF_RS08360	COG3451	type IV secretory pathway VirB4
CINF_RS08380	COG3041	Addiction module toxin RelE StbE family
CINF_RS08425	COG0582	viral genome integration into host DNA
CINF_RS08440	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CINF_RS08450	COG3162	membrane
CINF_RS08535	COG1749	Flagellar hook protein flgE
CINF_RS08540	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CINF_RS08555	COG0314	molybdopterin synthase activity
CINF_RS08570	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CINF_RS08575	COG2217	Heavy metal translocating P-type atpase
CINF_RS08585	COG0814	amino acid
CINF_RS08590	COG0217	transcriptional regulatory protein
CINF_RS08595	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CINF_RS08600	COG0051	transcription antitermination factor activity, RNA binding
CINF_RS08605	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CINF_RS08610	COG0088	Forms part of the polypeptide exit tunnel
CINF_RS08615	COG0089	rRNA binding
CINF_RS08620	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CINF_RS08625	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CINF_RS08630	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CINF_RS08635	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CINF_RS08640	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CINF_RS08645	COG0255	Belongs to the universal ribosomal protein uL29 family
CINF_RS08650	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CINF_RS08655	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CINF_RS08660	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CINF_RS08670	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CINF_RS08675	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CINF_RS08680	COG0402	S-adenosylhomocysteine deaminase activity
CINF_RS08685	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CINF_RS08690	COG0006	proline dipeptidase activity
CINF_RS08695	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CINF_RS08700	COG1419	protein localization to endoplasmic reticulum
CINF_RS08705	COG0455	bacterial-type flagellum organization
CINF_RS08715	COG1191	sigma factor activity
CINF_RS08720	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CINF_RS08725	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CINF_RS08725	COG1776	CheC inhibitor of MCP methylation
CINF_RS08730	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CINF_RS08740	COG0564	pseudouridine synthase activity
CINF_RS08755	COG0133	tryptophan synthase activity
CINF_RS08765	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CINF_RS08770	COG1793	dna ligase
CINF_RS08775	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CINF_RS08785	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CINF_RS08795	COG0587	DNA-directed DNA polymerase activity
CINF_RS08805	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CINF_RS08810	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CINF_RS08815	COG0148	phosphopyruvate hydratase activity
CINF_RS08825	COG0393	Putative heavy-metal-binding
CINF_RS08840	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CINF_RS08850	COG4679	PFAM Phage derived protein Gp49-like (DUF891)