locus-tag class description CleRt_RS00005 IPR013317 Chromosomal replication initiator protein DnaA CleRt_RS00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site CleRt_RS00005 IPR020591 Chromosomal replication control, initiator DnaA-like CleRt_RS00005 IPR001957 Chromosomal replication control, initiator DnaA CleRt_RS00005 IPR003593 AAA+ ATPase domain CleRt_RS00005 IPR010921 Trp repressor/replication initiator CleRt_RS00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00005 IPR038454 DnaA, N-terminal domain superfamily CleRt_RS00005 IPR024633 DnaA N-terminal domain CleRt_RS00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal CleRt_RS00010 IPR001001 DNA polymerase III, beta sliding clamp CleRt_RS00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal CleRt_RS00010 IPR022637 DNA polymerase III, beta sliding clamp, central CleRt_RS00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal CleRt_RS00015 IPR001238 DNA-binding, RecF CleRt_RS00015 IPR003395 RecF/RecN/SMC, N-terminal CleRt_RS00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00015 IPR042174 DNA-binding RecF, domain 2 CleRt_RS00015 IPR018078 DNA-binding, RecF, conserved site CleRt_RS00025 IPR001241 DNA topoisomerase, type IIA CleRt_RS00025 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CleRt_RS00025 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CleRt_RS00025 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CleRt_RS00025 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS00025 IPR041423 DNA gyrase subunit B insert domain CleRt_RS00025 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CleRt_RS00025 IPR018522 DNA topoisomerase, type IIA, conserved site CleRt_RS00025 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS00025 IPR002288 DNA gyrase B subunit, C-terminal CleRt_RS00025 IPR011557 DNA gyrase, subunit B CleRt_RS00025 IPR006171 TOPRIM domain CleRt_RS00025 IPR003594 Histidine kinase/HSP90-like ATPase CleRt_RS00025 IPR034160 DNA gyrase subunit B, TOPRIM domain CleRt_RS00040 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS00040 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CleRt_RS00040 IPR004398 RNA methyltransferase, RsmD CleRt_RS00055 IPR036225 SRP/SRP receptor, N-terminal CleRt_RS00055 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CleRt_RS00055 IPR004390 Signal-recognition particle receptor FtsY CleRt_RS00055 IPR013822 Signal recognition particle SRP54, helical bundle CleRt_RS00055 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00055 IPR003593 AAA+ ATPase domain CleRt_RS00055 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily CleRt_RS00070 IPR000943 RNA polymerase sigma-70 CleRt_RS00070 IPR013324 RNA polymerase sigma factor, region 3/4-like CleRt_RS00070 IPR013325 RNA polymerase sigma factor, region 2 CleRt_RS00070 IPR007630 RNA polymerase sigma-70 region 4 CleRt_RS00070 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria CleRt_RS00070 IPR014284 RNA polymerase sigma-70 like domain CleRt_RS00070 IPR007627 RNA polymerase sigma-70 region 2 CleRt_RS00070 IPR009042 RNA polymerase sigma-70 region 1.2 CleRt_RS00080 IPR002310 Glycine-tRNA ligase, alpha subunit CleRt_RS00080 IPR006194 Glycine-tRNA synthetase, heterodimeric CleRt_RS00085 IPR015944 Glycine-tRNA ligase, beta subunit CleRt_RS00085 IPR006194 Glycine-tRNA synthetase, heterodimeric CleRt_RS00085 IPR008909 DALR anticodon binding CleRt_RS00090 IPR006016 UspA CleRt_RS00090 IPR006015 Universal stress protein A family CleRt_RS00090 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS00095 IPR020939 Ribosomal protein L34, conserved site CleRt_RS00095 IPR000271 Ribosomal protein L34 CleRt_RS00100 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS00100 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS00100 IPR000100 Ribonuclease P CleRt_RS00100 IPR020539 Ribonuclease P, conserved site CleRt_RS00105 IPR002696 Putative membrane protein insertion efficiency factor CleRt_RS00110 IPR038210 Membrane insertase YidC, periplasmic domain CleRt_RS00110 IPR038221 YidC, periplasmic domain superfamily CleRt_RS00110 IPR028053 Membrane insertase YidC, N-terminal CleRt_RS00110 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 CleRt_RS00110 IPR019998 Membrane insertase YidC CleRt_RS00110 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CleRt_RS00115 IPR027368 tRNA modification GTPase MnmE domain 2 CleRt_RS00115 IPR005225 Small GTP-binding protein domain CleRt_RS00115 IPR004520 tRNA modification GTPase MnmE CleRt_RS00115 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 CleRt_RS00115 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00115 IPR025867 MnmE, helical domain CleRt_RS00115 IPR031168 TrmE-type guanine nucleotide-binding domain CleRt_RS00115 IPR018948 GTP-binding protein TrmE, N-terminal CleRt_RS00115 IPR006073 GTP binding domain CleRt_RS00120 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related CleRt_RS00120 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG CleRt_RS00120 IPR020595 MnmG-related, conserved site CleRt_RS00120 IPR036188 FAD/NAD(P)-binding domain superfamily CleRt_RS00120 IPR026904 GidA associated domain 3 CleRt_RS00125 IPR025669 AAA domain CleRt_RS00125 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00130 IPR041468 ParB/Spo0J, HTH domain CleRt_RS00130 IPR036086 ParB/Sulfiredoxin superfamily CleRt_RS00130 IPR004437 ParB/RepB/Spo0J partition protein CleRt_RS00130 IPR003115 ParB/Sulfiredoxin CleRt_RS00160 IPR000568 ATP synthase, F0 complex, subunit A CleRt_RS00160 IPR023011 ATP synthase, F0 complex, subunit A, active site CleRt_RS00160 IPR035908 ATP synthase, F0 complex, subunit A superfamily CleRt_RS00165 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast CleRt_RS00165 IPR035921 F/V-ATP synthase subunit C superfamily CleRt_RS00165 IPR000454 ATP synthase, F0 complex, subunit C CleRt_RS00165 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site CleRt_RS00165 IPR038662 F1F0 ATP synthase subunit C superfamily CleRt_RS00165 IPR002379 V-ATPase proteolipid subunit C-like domain CleRt_RS00170 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast CleRt_RS00170 IPR005864 ATP synthase, F0 complex, subunit b, bacterial CleRt_RS00170 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily CleRt_RS00175 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily CleRt_RS00175 IPR000711 ATPase, OSCP/delta subunit CleRt_RS00180 IPR005294 ATP synthase, F1 complex, alpha subunit CleRt_RS00180 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain CleRt_RS00180 IPR000793 ATP synthase, alpha subunit, C-terminal CleRt_RS00180 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CleRt_RS00180 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CleRt_RS00180 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CleRt_RS00180 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CleRt_RS00180 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00180 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CleRt_RS00180 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily CleRt_RS00185 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily CleRt_RS00185 IPR000131 ATP synthase, F1 complex, gamma subunit CleRt_RS00185 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site CleRt_RS00190 IPR003593 AAA+ ATPase domain CleRt_RS00190 IPR005722 ATP synthase, F1 complex, beta subunit CleRt_RS00190 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CleRt_RS00190 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CleRt_RS00190 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CleRt_RS00190 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CleRt_RS00190 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal CleRt_RS00190 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00195 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit CleRt_RS00195 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain CleRt_RS00195 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal CleRt_RS00195 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily CleRt_RS00195 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal CleRt_RS00200 IPR018357 Hexapeptide transferase, conserved site CleRt_RS00200 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase CleRt_RS00200 IPR011004 Trimeric LpxA-like superfamily CleRt_RS00200 IPR029044 Nucleotide-diphospho-sugar transferases CleRt_RS00200 IPR025877 MobA-like NTP transferase CleRt_RS00200 IPR001451 Hexapeptide repeat CleRt_RS00200 IPR038009 GlmU, C-terminal LbH domain CleRt_RS00250 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 CleRt_RS00250 IPR001567 Peptidase M3A/M3B catalytic domain CleRt_RS00295 IPR037171 NagB/RpiA transferase-like CleRt_RS00295 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup CleRt_RS00295 IPR004788 Ribose 5-phosphate isomerase, type A CleRt_RS00300 IPR003751 Translational regulator CsrA CleRt_RS00300 IPR036107 Carbon storage regulator superfamily CleRt_RS00325 IPR023649 Deoxyribose-phosphate aldolase type II CleRt_RS00325 IPR011343 Deoxyribose-phosphate aldolase CleRt_RS00325 IPR002915 DeoC/FbaB/ lacD aldolase CleRt_RS00325 IPR013785 Aldolase-type TIM barrel CleRt_RS00330 IPR011268 Purine nucleoside phosphorylase CleRt_RS00330 IPR000845 Nucleoside phosphorylase domain CleRt_RS00330 IPR010943 Xanthosine phosphorylase CleRt_RS00330 IPR018099 Purine phosphorylase, family 2, conserved site CleRt_RS00330 IPR035994 Nucleoside phosphorylase superfamily CleRt_RS00345 IPR035994 Nucleoside phosphorylase superfamily CleRt_RS00345 IPR000845 Nucleoside phosphorylase domain CleRt_RS00345 IPR018016 Nucleoside phosphorylase, conserved site CleRt_RS00345 IPR004402 Purine nucleoside phosphorylase DeoD-type CleRt_RS00365 IPR036291 NAD(P)-binding domain superfamily CleRt_RS00365 IPR011342 Shikimate dehydrogenase CleRt_RS00365 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal CleRt_RS00365 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CleRt_RS00365 IPR022893 Shikimate dehydrogenase family CleRt_RS00375 IPR011701 Major facilitator superfamily CleRt_RS00375 IPR036259 MFS transporter superfamily CleRt_RS00375 IPR023727 Lysophospholipid transporter LplT CleRt_RS00380 IPR016037 3-dehydroquinate synthase AroB CleRt_RS00380 IPR030963 3-dehydroquinate synthase family CleRt_RS00380 IPR030960 3-dehydroquinate synthase domain CleRt_RS00385 IPR031322 Shikimate kinase/gluconokinase CleRt_RS00385 IPR000623 Shikimate kinase/Threonine synthase-like 1 CleRt_RS00385 IPR023000 Shikimate kinase, conserved site CleRt_RS00385 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00415 IPR024935 Rubredoxin domain CleRt_RS00415 IPR018527 Rubredoxin, iron-binding site CleRt_RS00415 IPR024922 Rubredoxin CleRt_RS00415 IPR024934 Rubredoxin-like domain CleRt_RS00425 IPR035903 HesB-like domain superfamily CleRt_RS00425 IPR023063 FeS cluster insertion protein ErpA CleRt_RS00425 IPR017870 FeS cluster insertion, C-terminal, conserved site CleRt_RS00425 IPR000361 FeS cluster biogenesis CleRt_RS00425 IPR016092 FeS cluster insertion protein CleRt_RS00430 IPR007536 Ribosomal RNA small subunit methyltransferase J CleRt_RS00430 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS00435 IPR011761 ATP-grasp fold CleRt_RS00435 IPR013815 ATP-grasp fold, subdomain 1 CleRt_RS00435 IPR004218 Prokaryotic glutathione synthetase, ATP-binding CleRt_RS00435 IPR006284 Glutathione synthetase, prokaryotic CleRt_RS00435 IPR016185 Pre-ATP-grasp domain superfamily CleRt_RS00435 IPR004215 Prokaryotic glutathione synthetase, N-terminal CleRt_RS00445 IPR023749 Co-chaperone DjlA CleRt_RS00445 IPR001623 DnaJ domain CleRt_RS00445 IPR036869 Chaperone J-domain superfamily CleRt_RS00445 IPR007791 Co-chaperone DjlA, N-terminal CleRt_RS00445 IPR029024 TerB-like CleRt_RS00450 IPR000056 Ribulose-phosphate 3-epimerase-like CleRt_RS00450 IPR013785 Aldolase-type TIM barrel CleRt_RS00450 IPR026019 Ribulose-phosphate 3-epimerase CleRt_RS00450 IPR011060 Ribulose-phosphate binding barrel CleRt_RS00455 IPR011566 Ubiquinone biosynthesis protein Coq7 CleRt_RS00455 IPR009078 Ferritin-like superfamily CleRt_RS00455 IPR012347 Ferritin-like CleRt_RS00465 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat CleRt_RS00465 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CleRt_RS00465 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CleRt_RS00465 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CleRt_RS00465 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative CleRt_RS00465 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CleRt_RS00465 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CleRt_RS00475 IPR022462 Lysine-2,3-aminomutase-like CleRt_RS00475 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase CleRt_RS00475 IPR013785 Aldolase-type TIM barrel CleRt_RS00475 IPR007197 Radical SAM CleRt_RS00535 IPR004095 TGS CleRt_RS00535 IPR031167 OBG-type guanine nucleotide-binding (G) domain CleRt_RS00535 IPR012676 TGS-like CleRt_RS00535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00535 IPR006073 GTP binding domain CleRt_RS00535 IPR023192 TGS-like domain superfamily CleRt_RS00535 IPR013029 YchF, C-terminal domain CleRt_RS00535 IPR041706 YchF, N-terminal CleRt_RS00535 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 CleRt_RS00535 IPR012675 Beta-grasp domain superfamily CleRt_RS00540 IPR018171 Peptidyl-tRNA hydrolase, conserved site CleRt_RS00540 IPR001328 Peptidyl-tRNA hydrolase CleRt_RS00540 IPR036416 Peptidyl-tRNA hydrolase superfamily CleRt_RS00545 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily CleRt_RS00545 IPR001021 Ribosomal protein L25, long-form CleRt_RS00545 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal CleRt_RS00545 IPR020057 Ribosomal protein L25, beta domain CleRt_RS00545 IPR029751 Ribosomal protein L25 CleRt_RS00545 IPR037121 Ribosomal protein L25, C-terminal CleRt_RS00565 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain CleRt_RS00565 IPR000836 Phosphoribosyltransferase domain CleRt_RS00565 IPR029057 Phosphoribosyltransferase-like CleRt_RS00565 IPR005946 Ribose-phosphate pyrophosphokinase CleRt_RS00565 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type CleRt_RS00565 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site CleRt_RS00580 IPR029046 Lipoprotein localisation LolA/LolB/LppX CleRt_RS00580 IPR004565 Outer membrane lipoprotein LolB CleRt_RS00590 IPR002646 Poly A polymerase, head domain CleRt_RS00590 IPR012006 tRNA nucleotidyltransferase, proteobacteria CleRt_RS00590 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain CleRt_RS00595 IPR033177 Phosphatidylserine decarboxylase CleRt_RS00595 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 CleRt_RS00595 IPR003817 Phosphatidylserine decarboxylase-related CleRt_RS00605 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal CleRt_RS00605 IPR004525 Elongation factor P--(R)-beta-lysine ligase CleRt_RS00605 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS00605 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CleRt_RS00610 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS00610 IPR014722 Ribosomal protein L2, domain 2 CleRt_RS00610 IPR020599 Translation elongation factor P/YeiP CleRt_RS00610 IPR013185 Translation elongation factor, KOW-like CleRt_RS00610 IPR001059 Translation elongation factor P/YeiP, central CleRt_RS00610 IPR013852 Translation elongation factor P/YeiP, conserved site CleRt_RS00610 IPR011768 Translation elongation factor P CleRt_RS00610 IPR008991 Translation protein SH3-like domain superfamily CleRt_RS00610 IPR015365 Elongation factor P, C-terminal CleRt_RS00615 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain CleRt_RS00615 IPR041236 Primosomal protein N, C-terminal domain CleRt_RS00615 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily CleRt_RS00615 IPR005259 Primosomal protein N' CleRt_RS00615 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00615 IPR001650 Helicase, C-terminal CleRt_RS00615 IPR014001 Helicase superfamily 1/2, ATP-binding domain CleRt_RS00615 IPR011545 DEAD/DEAH box helicase domain CleRt_RS00615 IPR041222 Primosomal protein N', 3' DNA-binding domain CleRt_RS00635 IPR038251 PdxB, dimerisation domain superfamily CleRt_RS00635 IPR036291 NAD(P)-binding domain superfamily CleRt_RS00635 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CleRt_RS00635 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain CleRt_RS00635 IPR020921 Erythronate-4-phosphate dehydrogenase CleRt_RS00635 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CleRt_RS00635 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CleRt_RS00670 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain CleRt_RS00670 IPR006683 Thioesterase domain CleRt_RS00670 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase CleRt_RS00670 IPR029069 HotDog domain superfamily CleRt_RS00675 IPR002293 Amino acid/polyamine transporter I CleRt_RS00690 IPR029060 PIN-like domain superfamily CleRt_RS00690 IPR002562 3'-5' exonuclease domain CleRt_RS00690 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CleRt_RS00690 IPR002421 5'-3' exonuclease, N-terminal CleRt_RS00690 IPR036397 Ribonuclease H superfamily CleRt_RS00690 IPR019760 DNA-directed DNA polymerase, family A, conserved site CleRt_RS00690 IPR001098 DNA-directed DNA polymerase, family A, palm domain CleRt_RS00690 IPR020045 DNA polymerase I-like, H3TH domain CleRt_RS00690 IPR018320 DNA polymerase 1 CleRt_RS00690 IPR002298 DNA polymerase A CleRt_RS00690 IPR008918 Helix-hairpin-helix motif, class 2 CleRt_RS00690 IPR012337 Ribonuclease H-like superfamily CleRt_RS00690 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CleRt_RS00730 IPR001347 Sugar isomerase (SIS) CleRt_RS00730 IPR017932 Glutamine amidotransferase type 2 domain CleRt_RS00730 IPR035466 GlmS/AgaS, SIS domain 1 CleRt_RS00730 IPR035490 GlmS/FrlB, SIS domain 2 CleRt_RS00730 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising CleRt_RS00730 IPR029055 Nucleophile aminohydrolases, N-terminal CleRt_RS00735 IPR005478 Transketolase, bacterial-like CleRt_RS00735 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CleRt_RS00735 IPR005475 Transketolase-like, pyrimidine-binding domain CleRt_RS00735 IPR005474 Transketolase, N-terminal CleRt_RS00735 IPR033247 Transketolase family CleRt_RS00735 IPR033248 Transketolase, C-terminal domain CleRt_RS00735 IPR020826 Transketolase binding site CleRt_RS00735 IPR029061 Thiamin diphosphate-binding fold CleRt_RS00740 IPR036291 NAD(P)-binding domain superfamily CleRt_RS00740 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CleRt_RS00740 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CleRt_RS00740 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CleRt_RS00740 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CleRt_RS00740 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CleRt_RS00745 IPR036043 Phosphoglycerate kinase superfamily CleRt_RS00745 IPR015824 Phosphoglycerate kinase, N-terminal CleRt_RS00745 IPR015911 Phosphoglycerate kinase, conserved site CleRt_RS00745 IPR001576 Phosphoglycerate kinase CleRt_RS00750 IPR015793 Pyruvate kinase, barrel CleRt_RS00750 IPR015795 Pyruvate kinase, C-terminal CleRt_RS00750 IPR011037 Pyruvate kinase-like, insert domain superfamily CleRt_RS00750 IPR036918 Pyruvate kinase, C-terminal domain superfamily CleRt_RS00750 IPR018209 Pyruvate kinase, active site CleRt_RS00750 IPR001697 Pyruvate kinase CleRt_RS00750 IPR015806 Pyruvate kinase, insert domain superfamily CleRt_RS00750 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CleRt_RS00750 IPR040442 Pyruvate kinase-like domain superfamily CleRt_RS00755 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype CleRt_RS00755 IPR000771 Fructose-bisphosphate aldolase, class-II CleRt_RS00755 IPR013785 Aldolase-type TIM barrel CleRt_RS00765 IPR013356 Type II secretion system GspD CleRt_RS00765 IPR005644 NolW-like CleRt_RS00765 IPR001775 GspD/PilQ family CleRt_RS00765 IPR004846 Type II/III secretion system CleRt_RS00765 IPR038591 NolW-like superfamily CleRt_RS00765 IPR004845 Type II secretion system GspD, conserved site CleRt_RS00770 IPR038591 NolW-like superfamily CleRt_RS00770 IPR001775 GspD/PilQ family CleRt_RS00770 IPR004845 Type II secretion system GspD, conserved site CleRt_RS00770 IPR005644 NolW-like CleRt_RS00770 IPR004846 Type II/III secretion system CleRt_RS00770 IPR013356 Type II secretion system GspD CleRt_RS00795 IPR010055 Type II secretion system protein J CleRt_RS00795 IPR012902 Prokaryotic N-terminal methylation site CleRt_RS00825 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00825 IPR006073 GTP binding domain CleRt_RS00825 IPR030393 EngB-type guanine nucleotide-binding (G) domain CleRt_RS00825 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC CleRt_RS00835 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00835 IPR003593 AAA+ ATPase domain CleRt_RS00835 IPR003439 ABC transporter-like CleRt_RS00835 IPR017871 ABC transporter, conserved site CleRt_RS00840 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain CleRt_RS00840 IPR029058 Alpha/Beta hydrolase fold CleRt_RS00845 IPR007167 Ferrous iron transporter FeoA domain CleRt_RS00845 IPR038157 Ferrous iron transporter, core domain CleRt_RS00845 IPR008988 Transcriptional repressor, C-terminal CleRt_RS00850 IPR006073 GTP binding domain CleRt_RS00850 IPR011640 Ferrous iron transport protein B, C-terminal CleRt_RS00850 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CleRt_RS00850 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00850 IPR030389 FeoB-type guanine nucleotide-binding (G) domain CleRt_RS00850 IPR003373 Ferrous iron transport protein B CleRt_RS00880 IPR023563 Ribosomal protein L13, conserved site CleRt_RS00880 IPR005822 Ribosomal protein L13 CleRt_RS00880 IPR005823 Ribosomal protein L13, bacterial-type CleRt_RS00880 IPR036899 Ribosomal protein L13 superfamily CleRt_RS00885 IPR023035 Ribosomal protein S9, bacterial/plastid CleRt_RS00885 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS00885 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS00885 IPR000754 Ribosomal protein S9 CleRt_RS00885 IPR020574 Ribosomal protein S9, conserved site CleRt_RS00890 IPR004046 Glutathione S-transferase, C-terminal CleRt_RS00890 IPR040079 Glutathione Transferase family CleRt_RS00890 IPR004045 Glutathione S-transferase, N-terminal CleRt_RS00890 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CleRt_RS00890 IPR010987 Glutathione S-transferase, C-terminal-like CleRt_RS00890 IPR036249 Thioredoxin-like superfamily CleRt_RS00890 IPR034341 Stringent starvation protein A, N-terminal CleRt_RS00895 IPR007481 Stringent starvation protein B CleRt_RS00895 IPR036760 SspB-like superfamily CleRt_RS00900 IPR008915 Peptidase M50 CleRt_RS00905 IPR014004 Transport-associated and nodulation domain, bacteria CleRt_RS00905 IPR007055 BON domain CleRt_RS00910 IPR001347 Sugar isomerase (SIS) CleRt_RS00910 IPR035461 GmhA/DiaA CleRt_RS00910 IPR004515 Phosphoheptose isomerase CleRt_RS00920 IPR000878 Tetrapyrrole methylase CleRt_RS00920 IPR014777 Tetrapyrrole methylase, subdomain 1 CleRt_RS00920 IPR035996 Tetrapyrrole methylase superfamily CleRt_RS00920 IPR008189 rRNA small subunit methyltransferase I CleRt_RS00920 IPR018063 SAM-dependent methyltransferase RsmI, conserved site CleRt_RS00920 IPR014776 Tetrapyrrole methylase, subdomain 2 CleRt_RS00925 IPR005685 Integration host factor, beta subunit CleRt_RS00925 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CleRt_RS00925 IPR020816 Histone-like DNA-binding protein, conserved site CleRt_RS00925 IPR000119 Histone-like DNA-binding protein CleRt_RS00940 IPR020591 Chromosomal replication control, initiator DnaA-like CleRt_RS00940 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS00940 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae CleRt_RS00940 IPR017788 DnaA regulatory inactivator Hda CleRt_RS00940 IPR013317 Chromosomal replication initiator protein DnaA CleRt_RS00985 IPR036291 NAD(P)-binding domain superfamily CleRt_RS00985 IPR003462 Ornithine cyclodeaminase/mu-crystallin CleRt_RS00985 IPR023401 Ornithine cyclodeaminase, N-terminal CleRt_RS00990 IPR005481 Biotin carboxylase-like, N-terminal domain CleRt_RS00990 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase CleRt_RS00990 IPR011761 ATP-grasp fold CleRt_RS00990 IPR013815 ATP-grasp fold, subdomain 1 CleRt_RS00990 IPR011054 Rudiment single hybrid motif CleRt_RS00990 IPR016185 Pre-ATP-grasp domain superfamily CleRt_RS00990 IPR011764 Biotin carboxylation domain CleRt_RS00990 IPR005482 Biotin carboxylase, C-terminal CleRt_RS00990 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CleRt_RS00995 IPR011053 Single hybrid motif CleRt_RS00995 IPR000089 Biotin/lipoyl attachment CleRt_RS00995 IPR001882 Biotin-binding site CleRt_RS00995 IPR001249 Acetyl-CoA biotin carboxyl carrier CleRt_RS01005 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain CleRt_RS01005 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CleRt_RS01005 IPR022910 Thiol:disulphide interchange protein DsbD CleRt_RS01005 IPR013766 Thioredoxin domain CleRt_RS01005 IPR017937 Thioredoxin, conserved site CleRt_RS01005 IPR035671 DsbD gamma CleRt_RS01005 IPR003834 Cytochrome C biogenesis protein, transmembrane domain CleRt_RS01005 IPR036249 Thioredoxin-like superfamily CleRt_RS01020 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain CleRt_RS01020 IPR036008 Aconitase, iron-sulfur domain CleRt_RS01020 IPR018136 Aconitase family, 4Fe-4S cluster binding site CleRt_RS01020 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CleRt_RS01020 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain CleRt_RS01020 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CleRt_RS01020 IPR006249 Aconitase/Iron-responsive element-binding protein 2 CleRt_RS01025 IPR020818 GroES chaperonin family CleRt_RS01025 IPR037124 GroES chaperonin superfamily CleRt_RS01025 IPR011032 GroES-like superfamily CleRt_RS01025 IPR018369 Chaperonin GroES, conserved site CleRt_RS01030 IPR018370 Chaperonin Cpn60, conserved site CleRt_RS01030 IPR001844 Chaperonin Cpn60 CleRt_RS01030 IPR027413 GroEL-like equatorial domain superfamily CleRt_RS01030 IPR027409 GroEL-like apical domain superfamily CleRt_RS01030 IPR002423 Chaperonin Cpn60/TCP-1 family CleRt_RS01030 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CleRt_RS01035 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain CleRt_RS01035 IPR006223 Glycine cleavage system T protein CleRt_RS01035 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal CleRt_RS01035 IPR028896 Aminomethyltransferase-like CleRt_RS01035 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 CleRt_RS01035 IPR006222 Aminomethyltransferase, folate-binding domain CleRt_RS01035 IPR022903 Glycine cleavage system T protein, bacteria CleRt_RS01040 IPR000089 Biotin/lipoyl attachment CleRt_RS01040 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CleRt_RS01040 IPR033753 Glycine cleavage system H-protein/Simiate CleRt_RS01040 IPR017453 Glycine cleavage system H-protein, subgroup CleRt_RS01040 IPR011053 Single hybrid motif CleRt_RS01040 IPR002930 Glycine cleavage system H-protein CleRt_RS01045 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS01045 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS01045 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 CleRt_RS01045 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS01045 IPR020581 Glycine cleavage system P protein CleRt_RS01050 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS01050 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS01050 IPR020581 Glycine cleavage system P protein CleRt_RS01050 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 CleRt_RS01050 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS01060 IPR036291 NAD(P)-binding domain superfamily CleRt_RS01060 IPR000846 Dihydrodipicolinate reductase, N-terminal CleRt_RS01060 IPR022664 Dihydrodipicolinate reductase, conserved site CleRt_RS01060 IPR023940 Dihydrodipicolinate reductase CleRt_RS01060 IPR022663 Dihydrodipicolinate reductase, C-terminal CleRt_RS01065 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily CleRt_RS01065 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily CleRt_RS01065 IPR019831 Manganese/iron superoxide dismutase, N-terminal CleRt_RS01065 IPR001189 Manganese/iron superoxide dismutase CleRt_RS01065 IPR019833 Manganese/iron superoxide dismutase, binding site CleRt_RS01065 IPR019832 Manganese/iron superoxide dismutase, C-terminal CleRt_RS01070 IPR024706 Peroxiredoxin, AhpC-type CleRt_RS01070 IPR019479 Peroxiredoxin, C-terminal CleRt_RS01070 IPR013766 Thioredoxin domain CleRt_RS01070 IPR036249 Thioredoxin-like superfamily CleRt_RS01070 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CleRt_RS01075 IPR036397 Ribonuclease H superfamily CleRt_RS01075 IPR005987 Ribonuclease T CleRt_RS01075 IPR013520 Exonuclease, RNase T/DNA polymerase III CleRt_RS01075 IPR012337 Ribonuclease H-like superfamily CleRt_RS01080 IPR002195 Dihydroorotase, conserved site CleRt_RS01080 IPR032466 Metal-dependent hydrolase CleRt_RS01080 IPR004721 Dihydroorotase homodimeric type CleRt_RS01080 IPR006680 Amidohydrolase-related CleRt_RS01095 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CleRt_RS01095 IPR004035 Endonuclease III, iron-sulphur binding site CleRt_RS01095 IPR004036 Endonuclease III-like, conserved site-2 CleRt_RS01095 IPR011257 DNA glycosylase CleRt_RS01095 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CleRt_RS01095 IPR003265 HhH-GPD domain CleRt_RS01095 IPR005759 Endonuclease III CleRt_RS01095 IPR000445 Helix-hairpin-helix motif CleRt_RS01100 IPR007202 4Fe-4S domain CleRt_RS01100 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria CleRt_RS01100 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB CleRt_RS01100 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CleRt_RS01100 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CleRt_RS01105 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain CleRt_RS01105 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CleRt_RS01105 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CleRt_RS01105 IPR023458 Methionine-tRNA ligase, type 1 CleRt_RS01105 IPR014758 Methionyl-tRNA synthetase CleRt_RS01105 IPR015413 Methionyl/Leucyl tRNA synthetase CleRt_RS01105 IPR033911 Methioninyl-tRNA synthetase core domain CleRt_RS01105 IPR029038 Methionyl-tRNA synthetase, Zn-domain CleRt_RS01105 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS01105 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CleRt_RS01110 IPR019591 Mrp/NBP35 ATP-binding protein CleRt_RS01110 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CleRt_RS01110 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS01110 IPR000808 Mrp, conserved site CleRt_RS01115 IPR033704 dUTPase, trimeric CleRt_RS01115 IPR036157 dUTPase-like superfamily CleRt_RS01115 IPR029054 dUTPase-like CleRt_RS01115 IPR011962 dCTP deaminase CleRt_RS01120 IPR004468 CTP synthase CleRt_RS01120 IPR029062 Class I glutamine amidotransferase-like CleRt_RS01120 IPR017456 CTP synthase, N-terminal CleRt_RS01120 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS01120 IPR033828 CTP synthase GATase domain CleRt_RS01120 IPR017926 Glutamine amidotransferase CleRt_RS01125 IPR013785 Aldolase-type TIM barrel CleRt_RS01125 IPR006269 3-deoxy-8-phosphooctulonate synthase CleRt_RS01125 IPR006218 DAHP synthetase I/KDSA CleRt_RS01130 IPR020810 Enolase, C-terminal TIM barrel domain CleRt_RS01130 IPR029017 Enolase-like, N-terminal CleRt_RS01130 IPR036849 Enolase-like, C-terminal domain superfamily CleRt_RS01130 IPR020811 Enolase, N-terminal CleRt_RS01130 IPR000941 Enolase CleRt_RS01130 IPR020809 Enolase, conserved site CleRt_RS01135 IPR007060 Septum formation initiator FtsL/DivIC CleRt_RS01135 IPR023081 Cell division protein FtsB CleRt_RS01140 IPR030048 Survival protein SurE CleRt_RS01140 IPR036523 SurE-like phosphatase/nucleotidase superfamily CleRt_RS01140 IPR002828 Survival protein SurE-like phosphatase/nucleotidase CleRt_RS01145 IPR016047 Peptidase M23 CleRt_RS01145 IPR018392 LysM domain CleRt_RS01145 IPR011055 Duplicated hybrid motif CleRt_RS01145 IPR036779 LysM domain superfamily CleRt_RS01170 IPR011910 ADP-heptose--LPS heptosyltransferase 2 CleRt_RS01170 IPR002201 Glycosyl transferase, family 9 CleRt_RS01175 IPR010663 Zinc finger, FPG/IleRS-type CleRt_RS01175 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type CleRt_RS01175 IPR010979 Ribosomal protein S13-like, H2TH CleRt_RS01175 IPR035937 MutM-like, N-terminal CleRt_RS01175 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain CleRt_RS01175 IPR020629 Formamidopyrimidine-DNA glycosylase CleRt_RS01175 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site CleRt_RS01175 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding CleRt_RS01180 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type CleRt_RS01180 IPR010979 Ribosomal protein S13-like, H2TH CleRt_RS01180 IPR035937 MutM-like, N-terminal CleRt_RS01180 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain CleRt_RS01180 IPR010663 Zinc finger, FPG/IleRS-type CleRt_RS01180 IPR020629 Formamidopyrimidine-DNA glycosylase CleRt_RS01180 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding CleRt_RS01185 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding CleRt_RS01185 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site CleRt_RS01185 IPR020629 Formamidopyrimidine-DNA glycosylase CleRt_RS01185 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain CleRt_RS01185 IPR035937 MutM-like, N-terminal CleRt_RS01185 IPR010979 Ribosomal protein S13-like, H2TH CleRt_RS01185 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type CleRt_RS01185 IPR010663 Zinc finger, FPG/IleRS-type CleRt_RS01210 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS01210 IPR023030 Bifunctional protein HldE CleRt_RS01210 IPR029056 Ribokinase-like CleRt_RS01210 IPR011914 RfaE bifunctional protein, domain II CleRt_RS01210 IPR011913 RfaE bifunctional protein, domain I CleRt_RS01210 IPR011611 Carbohydrate kinase PfkB CleRt_RS01210 IPR004821 Cytidyltransferase-like domain CleRt_RS01210 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CleRt_RS01215 IPR001509 NAD-dependent epimerase/dehydratase CleRt_RS01215 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase CleRt_RS01215 IPR036291 NAD(P)-binding domain superfamily CleRt_RS01370 IPR004839 Aminotransferase, class I/classII CleRt_RS01370 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria CleRt_RS01370 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type CleRt_RS01370 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS01370 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS01370 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS01375 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CleRt_RS01375 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS01375 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type CleRt_RS01375 IPR004839 Aminotransferase, class I/classII CleRt_RS01375 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS01375 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS01410 IPR007624 RNA polymerase sigma-70 region 3 CleRt_RS01410 IPR036388 Winged helix-like DNA-binding domain superfamily CleRt_RS01410 IPR028630 RNA polymerase sigma factor RpoD CleRt_RS01410 IPR012760 RNA polymerase sigma factor RpoD, C-terminal CleRt_RS01410 IPR014284 RNA polymerase sigma-70 like domain CleRt_RS01410 IPR000943 RNA polymerase sigma-70 CleRt_RS01410 IPR013325 RNA polymerase sigma factor, region 2 CleRt_RS01410 IPR009042 RNA polymerase sigma-70 region 1.2 CleRt_RS01410 IPR007627 RNA polymerase sigma-70 region 2 CleRt_RS01410 IPR042189 Sigma-70 factor, region 1.1 superfamily CleRt_RS01410 IPR007630 RNA polymerase sigma-70 region 4 CleRt_RS01410 IPR007631 RNA polymerase sigma factor 70, non-essential domain CleRt_RS01410 IPR007127 RNA polymerase sigma factor 70, region 1.1 CleRt_RS01410 IPR013324 RNA polymerase sigma factor, region 3/4-like CleRt_RS01415 IPR019475 DNA primase, DnaB-helicase binding domain CleRt_RS01415 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CleRt_RS01415 IPR013264 DNA primase, catalytic core, N-terminal CleRt_RS01415 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily CleRt_RS01415 IPR006171 TOPRIM domain CleRt_RS01415 IPR030846 DNA primase DnaG, bacteria CleRt_RS01415 IPR002694 Zinc finger, CHC2-type CleRt_RS01415 IPR036977 DNA Primase, CHC2-type zinc finger CleRt_RS01415 IPR013173 DNA primase DnaG, DnaB-binding domain CleRt_RS01415 IPR034151 Bacterial DnaG primase, TOPRIM domain CleRt_RS01415 IPR006295 DNA primase, DnaG CleRt_RS01420 IPR038380 Ribosomal protein S21 superfamily CleRt_RS01420 IPR001911 Ribosomal protein S21 CleRt_RS01430 IPR023171 Na/H antiporter domain superfamily CleRt_RS01430 IPR004670 Na+/H+ antiporter NhaA CleRt_RS01440 IPR005025 NADPH-dependent FMN reductase-like CleRt_RS01440 IPR010089 Flavoprotein WrbA-like CleRt_RS01440 IPR029039 Flavoprotein-like superfamily CleRt_RS01440 IPR008254 Flavodoxin/nitric oxide synthase CleRt_RS01440 IPR001226 Flavodoxin, conserved site CleRt_RS01450 IPR038063 L,D-transpeptidase catalytic domain-like CleRt_RS01450 IPR041597 L,D-transpeptidase C-terminal domain CleRt_RS01450 IPR005490 L,D-transpeptidase catalytic domain CleRt_RS01450 IPR018392 LysM domain CleRt_RS01475 IPR014168 Tol-Pal system protein TolR CleRt_RS01475 IPR003400 Biopolymer transport protein ExbD/TolR CleRt_RS01480 IPR002898 MotA/TolQ/ExbB proton channel CleRt_RS01480 IPR014163 Tol-Pal system, TolQ CleRt_RS01490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS01490 IPR036390 Winged helix DNA-binding domain superfamily CleRt_RS01490 IPR004605 DNA helicase, Holliday junction RuvB-type CleRt_RS01490 IPR008824 RuvB-like P-loop domain CleRt_RS01490 IPR003593 AAA+ ATPase domain CleRt_RS01490 IPR041445 RuvB, AAA lid domain CleRt_RS01490 IPR008823 RuvB C-terminal winged helix domain CleRt_RS01490 IPR036388 Winged helix-like DNA-binding domain superfamily CleRt_RS01495 IPR000085 Bacterial DNA recombination protein RuvA CleRt_RS01495 IPR010994 RuvA domain 2-like CleRt_RS01495 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CleRt_RS01495 IPR011114 Holliday junction DNA helicase RuvA, C-terminal CleRt_RS01495 IPR036267 RuvA, C-terminal domain superfamily CleRt_RS01495 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial CleRt_RS01495 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS01500 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site CleRt_RS01500 IPR036397 Ribonuclease H superfamily CleRt_RS01500 IPR012337 Ribonuclease H-like superfamily CleRt_RS01500 IPR002176 Crossover junction endodeoxyribonuclease RuvC CleRt_RS01505 IPR026564 Transcriptional regulator TACO1-like, domain 3 CleRt_RS01505 IPR029072 YebC-like CleRt_RS01505 IPR002876 Transcriptional regulator TACO1-like CleRt_RS01505 IPR017856 Integrase-like, N-terminal CleRt_RS01510 IPR029351 GAD domain CleRt_RS01510 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS01510 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CleRt_RS01510 IPR004524 Aspartate-tRNA ligase, type 1 CleRt_RS01510 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CleRt_RS01510 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS01510 IPR004115 GAD-like domain superfamily CleRt_RS01510 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CleRt_RS01540 IPR033909 Ribonucleotide reductase small subunit CleRt_RS01540 IPR012348 Ribonucleotide reductase-like CleRt_RS01540 IPR009078 Ferritin-like superfamily CleRt_RS01540 IPR000358 Ribonucleotide reductase small subunit family CleRt_RS01545 IPR000788 Ribonucleotide reductase large subunit, C-terminal CleRt_RS01545 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal CleRt_RS01545 IPR013509 Ribonucleotide reductase large subunit, N-terminal CleRt_RS01545 IPR013346 Ribonucleotide reductase, class I , alpha subunit CleRt_RS01545 IPR005144 ATP-cone domain CleRt_RS01545 IPR039718 Ribonucleoside-diphosphate reductase large subunit CleRt_RS01555 IPR003018 GAF domain CleRt_RS01555 IPR023151 PEP-utilising enzyme, conserved site CleRt_RS01555 IPR006318 Phosphotransferase system, enzyme I-like CleRt_RS01555 IPR036637 Phosphohistidine domain superfamily CleRt_RS01555 IPR008731 Phosphotransferase system, enzyme I N-terminal CleRt_RS01555 IPR000121 PEP-utilising enzyme, C-terminal CleRt_RS01555 IPR036618 PtsI, HPr-binding domain superfamily CleRt_RS01555 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CleRt_RS01555 IPR029016 GAF-like domain superfamily CleRt_RS01555 IPR008279 PEP-utilising enzyme, mobile domain CleRt_RS01555 IPR018274 PEP-utilising enzyme, active site CleRt_RS01555 IPR040442 Pyruvate kinase-like domain superfamily CleRt_RS01560 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt CleRt_RS01570 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily CleRt_RS01570 IPR020940 Thymidylate synthase, active site CleRt_RS01570 IPR000398 Thymidylate synthase CleRt_RS01570 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain CleRt_RS01585 IPR001478 PDZ domain CleRt_RS01585 IPR004447 C-terminal-processing peptidase S41A CleRt_RS01585 IPR005151 Tail specific protease CleRt_RS01585 IPR036034 PDZ superfamily CleRt_RS01585 IPR029045 ClpP/crotonase-like domain superfamily CleRt_RS01595 IPR011258 BPG-independent PGAM, N-terminal CleRt_RS01595 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily CleRt_RS01595 IPR006124 Metalloenzyme CleRt_RS01595 IPR017850 Alkaline-phosphatase-like, core domain superfamily CleRt_RS01595 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent CleRt_RS01610 IPR036873 Rhodanese-like domain superfamily CleRt_RS01610 IPR023695 Thiosulfate sulfurtransferase, bacterial CleRt_RS01610 IPR001763 Rhodanese-like domain CleRt_RS01615 IPR036249 Thioredoxin-like superfamily CleRt_RS01615 IPR002109 Glutaredoxin CleRt_RS01615 IPR011900 Glutaredoxin, GrxC CleRt_RS01615 IPR014025 Glutaredoxin subgroup CleRt_RS01615 IPR011767 Glutaredoxin active site CleRt_RS01620 IPR035958 SecB-like superfamily CleRt_RS01620 IPR003708 Bacterial protein export chaperone SecB CleRt_RS01625 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent CleRt_RS01625 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CleRt_RS01625 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CleRt_RS01625 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal CleRt_RS01625 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal CleRt_RS01625 IPR036291 NAD(P)-binding domain superfamily CleRt_RS01650 IPR001763 Rhodanese-like domain CleRt_RS01650 IPR040503 UPF0176, acylphosphatase-like domain CleRt_RS01650 IPR020936 Uncharacterised protein family UPF0176 CleRt_RS01650 IPR036873 Rhodanese-like domain superfamily CleRt_RS01660 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal CleRt_RS01660 IPR029045 ClpP/crotonase-like domain superfamily CleRt_RS01660 IPR001095 Acetyl-CoA carboxylase, alpha subunit CleRt_RS01680 IPR009000 Translation protein, beta-barrel domain superfamily CleRt_RS01680 IPR035654 Elongation factor 4, domain IV CleRt_RS01680 IPR013842 GTP-binding protein LepA, C-terminal CleRt_RS01680 IPR038363 LepA, C-terminal domain superfamily CleRt_RS01680 IPR031157 Tr-type G domain, conserved site CleRt_RS01680 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS01680 IPR004161 Translation elongation factor EFTu-like, domain 2 CleRt_RS01680 IPR000640 Elongation factor EFG, domain V-like CleRt_RS01680 IPR035647 EF-G domain III/V-like CleRt_RS01680 IPR006297 Elongation factor 4 CleRt_RS01680 IPR005225 Small GTP-binding protein domain CleRt_RS01680 IPR000795 Transcription factor, GTP-binding domain CleRt_RS01690 IPR014720 Double-stranded RNA-binding domain CleRt_RS01690 IPR000999 Ribonuclease III domain CleRt_RS01690 IPR011907 Ribonuclease III CleRt_RS01690 IPR036389 Ribonuclease III, endonuclease domain superfamily CleRt_RS01695 IPR009019 K homology domain superfamily, prokaryotic type CleRt_RS01695 IPR005225 Small GTP-binding protein domain CleRt_RS01695 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS01695 IPR004044 K Homology domain, type 2 CleRt_RS01695 IPR015946 K homology domain-like, alpha/beta CleRt_RS01695 IPR006073 GTP binding domain CleRt_RS01695 IPR005662 GTP-binding protein Era CleRt_RS01695 IPR030388 Era-type guanine nucleotide-binding (G) domain CleRt_RS01700 IPR003717 Recombination protein O, RecO CleRt_RS01700 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS01700 IPR022572 DNA replication/recombination mediator RecO, N-terminal CleRt_RS01700 IPR037278 ARFGAP/RecO-like zinc finger CleRt_RS01705 IPR013785 Aldolase-type TIM barrel CleRt_RS01705 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ CleRt_RS01705 IPR036130 Pyridoxine 5'-phosphate synthase CleRt_RS01710 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CleRt_RS01710 IPR010138 UDP-2,3-diacylglucosamine hydrolase CleRt_RS01715 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 CleRt_RS01715 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding CleRt_RS01715 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CleRt_RS01715 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial CleRt_RS01715 IPR000924 Glutamyl/glutaminyl-tRNA synthetase CleRt_RS01715 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS01715 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain CleRt_RS01715 IPR033910 Glutamyl-tRNA synthetase CleRt_RS01720 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CleRt_RS01720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS01720 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase CleRt_RS01720 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR CleRt_RS01720 IPR015803 Cysteine-tRNA ligase CleRt_RS01720 IPR032678 tRNA synthetases class I, catalytic domain CleRt_RS01785 IPR018027 Asn/Gln amidotransferase CleRt_RS01785 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic CleRt_RS01785 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E CleRt_RS01785 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit CleRt_RS01785 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 CleRt_RS01785 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site CleRt_RS01785 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CleRt_RS01785 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like CleRt_RS01785 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 CleRt_RS01790 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit CleRt_RS01790 IPR036928 Amidase signature (AS) superfamily CleRt_RS01790 IPR023631 Amidase signature domain CleRt_RS01790 IPR020556 Amidase, conserved site CleRt_RS01790 IPR000120 Amidase CleRt_RS01795 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C CleRt_RS01795 IPR003837 Glu-tRNAGln amidotransferase C subunit CleRt_RS01800 IPR004753 Cell shape determining protein MreB CleRt_RS01805 IPR007221 Rod shape-determining protein MreC CleRt_RS01805 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 CleRt_RS01805 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 CleRt_RS01825 IPR035068 Metalloprotease TldD/PmbA, N-terminal CleRt_RS01825 IPR002510 Metalloprotease TldD/PmbA CleRt_RS01825 IPR025502 TldD CleRt_RS01825 IPR036059 Metalloprotease TldD/PmbA superfamily CleRt_RS01830 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CleRt_RS01830 IPR000119 Histone-like DNA-binding protein CleRt_RS01830 IPR020816 Histone-like DNA-binding protein, conserved site CleRt_RS01855 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic CleRt_RS01855 IPR000652 Triosephosphate isomerase CleRt_RS01855 IPR020861 Triosephosphate isomerase, active site CleRt_RS01855 IPR013785 Aldolase-type TIM barrel CleRt_RS01855 IPR035990 Triosephosphate isomerase superfamily CleRt_RS01860 IPR004692 Preprotein translocase SecG subunit CleRt_RS01870 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 CleRt_RS01870 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid CleRt_RS01870 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily CleRt_RS01875 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit CleRt_RS01875 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit CleRt_RS01880 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site CleRt_RS01880 IPR010218 NADH dehydrogenase, subunit C CleRt_RS01880 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily CleRt_RS01880 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit CleRt_RS01885 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H CleRt_RS01885 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site CleRt_RS01885 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily CleRt_RS01885 IPR001135 NADH-quinone oxidoreductase, subunit D CleRt_RS01885 IPR029014 [NiFe]-hydrogenase, large subunit CleRt_RS01890 IPR042128 NuoE domain CleRt_RS01890 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal CleRt_RS01890 IPR002023 NADH-quinone oxidoreductase subunit E-like CleRt_RS01890 IPR036249 Thioredoxin-like superfamily CleRt_RS01895 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain CleRt_RS01895 IPR019554 Soluble ligand binding domain CleRt_RS01895 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily CleRt_RS01895 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain CleRt_RS01895 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site CleRt_RS01895 IPR011537 NADH ubiquinone oxidoreductase, F subunit CleRt_RS01895 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily CleRt_RS01900 IPR010228 NADH:ubiquinone oxidoreductase, subunit G CleRt_RS01900 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding CleRt_RS01900 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal CleRt_RS01900 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CleRt_RS01900 IPR006656 Molybdopterin oxidoreductase CleRt_RS01900 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CleRt_RS01900 IPR036010 2Fe-2S ferredoxin-like superfamily CleRt_RS01900 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site CleRt_RS01905 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site CleRt_RS01905 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H CleRt_RS01910 IPR010226 NADH-quinone oxidoreductase, chain I CleRt_RS01910 IPR009051 Alpha-helical ferredoxin CleRt_RS01910 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CleRt_RS01910 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CleRt_RS01915 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 CleRt_RS01915 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ CleRt_RS01920 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K CleRt_RS01920 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like CleRt_RS01925 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 CleRt_RS01925 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup CleRt_RS01925 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CleRt_RS01925 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal CleRt_RS01930 IPR003918 NADH:ubiquinone oxidoreductase CleRt_RS01930 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CleRt_RS01930 IPR010227 NADH-quinone oxidoreductase, chain M/4 CleRt_RS01935 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 CleRt_RS01935 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CleRt_RS01950 IPR010214 Transcription termination factor NusA, C-terminal duplication CleRt_RS01950 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical CleRt_RS01950 IPR004087 K Homology domain CleRt_RS01950 IPR015946 K homology domain-like, alpha/beta CleRt_RS01950 IPR025249 KH domain, NusA-like CleRt_RS01950 IPR010213 Transcription termination factor NusA CleRt_RS01950 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS01950 IPR030842 Transcription termination/antitermination protein NusA, bacterial CleRt_RS01950 IPR036555 NusA, N-terminal domain superfamily CleRt_RS01950 IPR022967 RNA-binding domain, S1 CleRt_RS01950 IPR003029 S1 domain CleRt_RS01950 IPR013735 Transcription factor NusA, N-terminal CleRt_RS01950 IPR009019 K homology domain superfamily, prokaryotic type CleRt_RS01955 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CleRt_RS01955 IPR009061 Putative DNA-binding domain superfamily CleRt_RS01955 IPR006847 Translation initiation factor IF-2, N-terminal CleRt_RS01955 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS01955 IPR005225 Small GTP-binding protein domain CleRt_RS01955 IPR000795 Transcription factor, GTP-binding domain CleRt_RS01955 IPR000178 Translation initiation factor aIF-2, bacterial-like CleRt_RS01955 IPR023115 Translation initiation factor IF- 2, domain 3 CleRt_RS01955 IPR009000 Translation protein, beta-barrel domain superfamily CleRt_RS01955 IPR015760 Translation initiation factor IF- 2 CleRt_RS01960 IPR020053 Ribosome-binding factor A, conserved site CleRt_RS01960 IPR023799 Ribosome-binding factor A domain superfamily CleRt_RS01960 IPR000238 Ribosome-binding factor A CleRt_RS01960 IPR015946 K homology domain-like, alpha/beta CleRt_RS01965 IPR020103 Pseudouridine synthase, catalytic domain superfamily CleRt_RS01965 IPR036974 PUA domain superfamily CleRt_RS01965 IPR002501 Pseudouridine synthase II, N-terminal CleRt_RS01965 IPR015947 PUA-like superfamily CleRt_RS01965 IPR014780 tRNA pseudouridine synthase II, TruB CleRt_RS01965 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal CleRt_RS01965 IPR032819 tRNA pseudouridylate synthase B, C-terminal CleRt_RS01985 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CleRt_RS01985 IPR041166 LapB, rubredoxin metal binding domain CleRt_RS01985 IPR003593 AAA+ ATPase domain CleRt_RS01985 IPR004504 DNA repair protein RadA CleRt_RS01985 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS01985 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS01985 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS02005 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS02005 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS02005 IPR001085 Serine hydroxymethyltransferase CleRt_RS02005 IPR039429 Serine hydroxymethyltransferase-like domain CleRt_RS02005 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site CleRt_RS02005 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS02015 IPR006027 NusB/RsmB/TIM44 CleRt_RS02015 IPR011605 NusB antitermination factor CleRt_RS02015 IPR035926 NusB-like superfamily CleRt_RS02025 IPR006283 Thiamine-monophosphate kinase CleRt_RS02025 IPR010918 PurM-like, C-terminal domain CleRt_RS02025 IPR016188 PurM-like, N-terminal domain CleRt_RS02025 IPR036921 PurM-like, N-terminal domain superfamily CleRt_RS02025 IPR036676 PurM-like, C-terminal domain superfamily CleRt_RS02030 IPR026037 Phosphatidylglycerophosphatase A CleRt_RS02030 IPR036681 PgpA-like superfamily CleRt_RS02030 IPR007686 YutG/PgpA domain CleRt_RS02045 IPR016142 Citrate synthase-like, large alpha subdomain CleRt_RS02045 IPR036969 Citrate synthase superfamily CleRt_RS02045 IPR010953 Citrate synthase, type I CleRt_RS02045 IPR002020 Citrate synthase CleRt_RS02045 IPR024176 Citrate synthase, bacterial-type CleRt_RS02045 IPR019810 Citrate synthase active site CleRt_RS02045 IPR016143 Citrate synthase-like, small alpha subdomain CleRt_RS02050 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit CleRt_RS02050 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit CleRt_RS02050 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit CleRt_RS02050 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site CleRt_RS02055 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit CleRt_RS02055 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor CleRt_RS02055 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit CleRt_RS02060 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain CleRt_RS02060 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit CleRt_RS02060 IPR011281 Succinate dehydrogenase, flavoprotein subunit CleRt_RS02060 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily CleRt_RS02060 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily CleRt_RS02060 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site CleRt_RS02060 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal CleRt_RS02060 IPR036188 FAD/NAD(P)-binding domain superfamily CleRt_RS02065 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CleRt_RS02065 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CleRt_RS02065 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CleRt_RS02065 IPR012675 Beta-grasp domain superfamily CleRt_RS02065 IPR036010 2Fe-2S ferredoxin-like superfamily CleRt_RS02065 IPR009051 Alpha-helical ferredoxin CleRt_RS02065 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein CleRt_RS02065 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal CleRt_RS02070 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal CleRt_RS02070 IPR001017 Dehydrogenase, E1 component CleRt_RS02070 IPR011603 2-oxoglutarate dehydrogenase E1 component CleRt_RS02070 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily CleRt_RS02070 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain CleRt_RS02070 IPR005475 Transketolase-like, pyrimidine-binding domain CleRt_RS02070 IPR029061 Thiamin diphosphate-binding fold CleRt_RS02075 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CleRt_RS02075 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CleRt_RS02075 IPR036625 E3-binding domain superfamily CleRt_RS02075 IPR004167 Peripheral subunit-binding domain CleRt_RS02075 IPR011053 Single hybrid motif CleRt_RS02075 IPR006255 Dihydrolipoamide succinyltransferase CleRt_RS02075 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CleRt_RS02075 IPR000089 Biotin/lipoyl attachment CleRt_RS02080 IPR011761 ATP-grasp fold CleRt_RS02080 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type CleRt_RS02080 IPR013815 ATP-grasp fold, subdomain 1 CleRt_RS02080 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CleRt_RS02080 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site CleRt_RS02080 IPR005809 Succinate--CoA synthetase, beta subunit CleRt_RS02080 IPR016102 Succinyl-CoA synthetase-like CleRt_RS02085 IPR036291 NAD(P)-binding domain superfamily CleRt_RS02085 IPR016102 Succinyl-CoA synthetase-like CleRt_RS02085 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CleRt_RS02085 IPR003781 CoA-binding CleRt_RS02085 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site CleRt_RS02085 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site CleRt_RS02085 IPR005810 Succinyl-CoA ligase, alpha subunit CleRt_RS02105 IPR001714 Peptidase M24, methionine aminopeptidase CleRt_RS02105 IPR036005 Creatinase/aminopeptidase-like CleRt_RS02105 IPR000994 Peptidase M24 CleRt_RS02105 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 CleRt_RS02110 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid CleRt_RS02110 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily CleRt_RS02110 IPR001865 Ribosomal protein S2 CleRt_RS02110 IPR018130 Ribosomal protein S2, conserved site CleRt_RS02115 IPR009060 UBA-like superfamily CleRt_RS02115 IPR018101 Translation elongation factor Ts, conserved site CleRt_RS02115 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation CleRt_RS02115 IPR001816 Translation elongation factor EFTs/EF1B CleRt_RS02115 IPR036402 Elongation factor Ts, dimerisation domain superfamily CleRt_RS02120 IPR011817 Uridylate kinase CleRt_RS02120 IPR001048 Aspartate/glutamate/uridylate kinase CleRt_RS02120 IPR036393 Acetylglutamate kinase-like superfamily CleRt_RS02120 IPR015963 Uridylate kinase, bacteria CleRt_RS02125 IPR036191 RRF superfamily CleRt_RS02125 IPR002661 Ribosome recycling factor CleRt_RS02125 IPR023584 Ribosome recycling factor domain CleRt_RS02130 IPR036424 Decaprenyl diphosphate synthase-like superfamily CleRt_RS02130 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site CleRt_RS02130 IPR001441 Decaprenyl diphosphate synthase-like CleRt_RS02135 IPR000374 Phosphatidate cytidylyltransferase CleRt_RS02140 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 CleRt_RS02140 IPR015797 NUDIX hydrolase-like domain superfamily CleRt_RS02140 IPR000086 NUDIX hydrolase domain CleRt_RS02145 IPR006203 GHMP kinase, ATP-binding, conserved site CleRt_RS02145 IPR006204 GHMP kinase N-terminal domain CleRt_RS02145 IPR036554 GHMP kinase, C-terminal domain superfamily CleRt_RS02145 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS02145 IPR013750 GHMP kinase, C-terminal domain CleRt_RS02145 IPR000870 Homoserine kinase CleRt_RS02145 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS02190 IPR023707 Outer membrane protein assembly factor BamA CleRt_RS02190 IPR010827 POTRA domain, BamA/TamA-like CleRt_RS02190 IPR000184 Bacterial surface antigen (D15) CleRt_RS02190 IPR034746 POTRA domain CleRt_RS02190 IPR039910 Surface antigen D15-like CleRt_RS02200 IPR011004 Trimeric LpxA-like superfamily CleRt_RS02200 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region CleRt_RS02200 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD CleRt_RS02200 IPR001451 Hexapeptide repeat CleRt_RS02205 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ CleRt_RS02205 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ CleRt_RS02205 IPR029069 HotDog domain superfamily CleRt_RS02210 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal CleRt_RS02210 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily CleRt_RS02210 IPR001451 Hexapeptide repeat CleRt_RS02210 IPR011004 Trimeric LpxA-like superfamily CleRt_RS02210 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase CleRt_RS02210 IPR018357 Hexapeptide transferase, conserved site CleRt_RS02220 IPR003835 Glycosyl transferase, family 19 CleRt_RS02225 IPR000683 Oxidoreductase, N-terminal CleRt_RS02225 IPR036291 NAD(P)-binding domain superfamily CleRt_RS02225 IPR004104 Oxidoreductase, C-terminal CleRt_RS02240 IPR028883 tRNA-specific adenosine deaminase CleRt_RS02240 IPR016193 Cytidine deaminase-like CleRt_RS02240 IPR002125 Cytidine and deoxycytidylate deaminase domain CleRt_RS02240 IPR016192 APOBEC/CMP deaminase, zinc-binding CleRt_RS02245 IPR036649 Inorganic pyrophosphatase superfamily CleRt_RS02245 IPR008162 Inorganic pyrophosphatase CleRt_RS02250 IPR002872 Proline dehydrogenase domain CleRt_RS02250 IPR015590 Aldehyde dehydrogenase domain CleRt_RS02250 IPR013321 Arc-type ribbon-helix-helix CleRt_RS02250 IPR010985 Ribbon-helix-helix CleRt_RS02250 IPR016161 Aldehyde/histidinol dehydrogenase CleRt_RS02250 IPR016163 Aldehyde dehydrogenase, C-terminal CleRt_RS02250 IPR025703 Bifunctional protein PutA CleRt_RS02250 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CleRt_RS02250 IPR024082 Proline dehydrogenase PutA, domain II CleRt_RS02250 IPR016160 Aldehyde dehydrogenase, cysteine active site CleRt_RS02250 IPR024089 Proline dehydrogenase PutA, domain I/II CleRt_RS02250 IPR024090 Proline dehydrogenase PutA, domain I CleRt_RS02250 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain CleRt_RS02250 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 CleRt_RS02250 IPR029041 FAD-linked oxidoreductase-like CleRt_RS02250 IPR016162 Aldehyde dehydrogenase, N-terminal CleRt_RS02280 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain CleRt_RS02280 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CleRt_RS02280 IPR036641 HPT domain superfamily CleRt_RS02280 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CleRt_RS02280 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CleRt_RS02280 IPR005467 Histidine kinase domain CleRt_RS02280 IPR019247 Histidine kinase BarA, N-terminal CleRt_RS02280 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CleRt_RS02280 IPR001789 Signal transduction response regulator, receiver domain CleRt_RS02280 IPR003594 Histidine kinase/HSP90-like ATPase CleRt_RS02280 IPR003660 HAMP domain CleRt_RS02280 IPR011006 CheY-like superfamily CleRt_RS02290 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CleRt_RS02290 IPR000089 Biotin/lipoyl attachment CleRt_RS02290 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CleRt_RS02290 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CleRt_RS02290 IPR036625 E3-binding domain superfamily CleRt_RS02290 IPR004167 Peripheral subunit-binding domain CleRt_RS02290 IPR011053 Single hybrid motif CleRt_RS02295 IPR005475 Transketolase-like, pyrimidine-binding domain CleRt_RS02295 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CleRt_RS02295 IPR033248 Transketolase, C-terminal domain CleRt_RS02295 IPR029061 Thiamin diphosphate-binding fold CleRt_RS02300 IPR029061 Thiamin diphosphate-binding fold CleRt_RS02300 IPR001017 Dehydrogenase, E1 component CleRt_RS02300 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha CleRt_RS02305 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal CleRt_RS02305 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain CleRt_RS02305 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase CleRt_RS02305 IPR033524 Leu/Phe/Val dehydrogenases active site CleRt_RS02305 IPR036291 NAD(P)-binding domain superfamily CleRt_RS02305 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal CleRt_RS02315 IPR016193 Cytidine deaminase-like CleRt_RS02315 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CleRt_RS02315 IPR002125 Cytidine and deoxycytidylate deaminase domain CleRt_RS02315 IPR016192 APOBEC/CMP deaminase, zinc-binding CleRt_RS02315 IPR011549 Riboflavin-specific deaminase, C-terminal CleRt_RS02315 IPR004794 Riboflavin biosynthesis protein RibD CleRt_RS02315 IPR024072 Dihydrofolate reductase-like domain superfamily CleRt_RS02320 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CleRt_RS02320 IPR001783 Lumazine-binding protein CleRt_RS02320 IPR026017 Lumazine-binding domain CleRt_RS02320 IPR017938 Riboflavin synthase-like beta-barrel CleRt_RS02325 IPR016299 Riboflavin biosynthesis protein RibBA CleRt_RS02325 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CleRt_RS02325 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB CleRt_RS02325 IPR032677 GTP cyclohydrolase II CleRt_RS02325 IPR000926 GTP cyclohydrolase II, RibA CleRt_RS02325 IPR036144 RibA-like superfamily CleRt_RS02330 IPR034964 Lumazine synthase CleRt_RS02330 IPR002180 Lumazine/riboflavin synthase CleRt_RS02330 IPR036467 Lumazine/riboflavin synthase superfamily CleRt_RS02335 IPR002549 Transmembrane protein TqsA-like CleRt_RS02340 IPR004401 Nucleoid-associated protein YbaB/EbfC family CleRt_RS02340 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CleRt_RS02345 IPR000093 DNA recombination protein RecR CleRt_RS02345 IPR023627 Recombination protein RecR CleRt_RS02345 IPR023628 Recombination protein RecR, C4-type zinc finger CleRt_RS02345 IPR015967 Recombination protein RecR, conserved site CleRt_RS02345 IPR006171 TOPRIM domain CleRt_RS02345 IPR034137 RecR, TOPRIM domain CleRt_RS02355 IPR003593 AAA+ ATPase domain CleRt_RS02355 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily CleRt_RS02355 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS02355 IPR021029 DNA polymerase III, tau subunit, domain V CleRt_RS02355 IPR012763 DNA polymerase III, subunit gamma/ tau CleRt_RS02355 IPR022754 DNA polymerase III, gamma subunit, domain III CleRt_RS02355 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV CleRt_RS02355 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CleRt_RS02355 IPR001270 ClpA/B family CleRt_RS02375 IPR011004 Trimeric LpxA-like superfamily CleRt_RS02375 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily CleRt_RS02375 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family CleRt_RS02375 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 CleRt_RS02375 IPR001451 Hexapeptide repeat CleRt_RS02395 IPR005835 Nucleotidyl transferase domain CleRt_RS02395 IPR011051 RmlC-like cupin domain superfamily CleRt_RS02395 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal CleRt_RS02395 IPR014710 RmlC-like jelly roll fold CleRt_RS02395 IPR029044 Nucleotide-diphospho-sugar transferases CleRt_RS02395 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase CleRt_RS02405 IPR029055 Nucleophile aminohydrolases, N-terminal CleRt_RS02405 IPR017932 Glutamine amidotransferase type 2 domain CleRt_RS02405 IPR033738 Asparagine synthase, N-terminal domain CleRt_RS02405 IPR001962 Asparagine synthase CleRt_RS02405 IPR006426 Asparagine synthase, glutamine-hydrolyzing CleRt_RS02430 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS02430 IPR003439 ABC transporter-like CleRt_RS02430 IPR003593 AAA+ ATPase domain CleRt_RS02455 IPR008948 L-Aspartase-like CleRt_RS02455 IPR000362 Fumarate lyase family CleRt_RS02455 IPR020557 Fumarate lyase, conserved site CleRt_RS02455 IPR024083 Fumarase/histidase, N-terminal CleRt_RS02455 IPR009049 Argininosuccinate lyase CleRt_RS02455 IPR022761 Fumarate lyase, N-terminal CleRt_RS02455 IPR029419 Argininosuccinate lyase, C-terminal CleRt_RS02475 IPR013785 Aldolase-type TIM barrel CleRt_RS02475 IPR004136 Nitronate monooxygenase CleRt_RS02485 IPR004136 Nitronate monooxygenase CleRt_RS02485 IPR013785 Aldolase-type TIM barrel CleRt_RS02525 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CleRt_RS02525 IPR000183 Ornithine/DAP/Arg decarboxylase CleRt_RS02525 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal CleRt_RS02525 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site CleRt_RS02525 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal CleRt_RS02525 IPR002986 Diaminopimelate decarboxylase, LysA CleRt_RS02525 IPR029066 PLP-binding barrel CleRt_RS02530 IPR023496 Deoxyhypusine synthase-like CleRt_RS02530 IPR036982 Deoxyhypusine synthase superfamily CleRt_RS02530 IPR029035 DHS-like NAD/FAD-binding domain superfamily CleRt_RS02530 IPR002773 Deoxyhypusine synthase CleRt_RS02535 IPR023696 Ureohydrolase domain superfamily CleRt_RS02535 IPR006035 Ureohydrolase CleRt_RS02535 IPR005925 Agmatinase-related CleRt_RS02535 IPR020855 Ureohydrolase, manganese-binding site CleRt_RS02545 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CleRt_RS02545 IPR012000 Thiamine pyrophosphate enzyme, central domain CleRt_RS02545 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CleRt_RS02545 IPR029061 Thiamin diphosphate-binding fold CleRt_RS02545 IPR029035 DHS-like NAD/FAD-binding domain superfamily CleRt_RS02545 IPR000399 TPP-binding enzyme, conserved site CleRt_RS02580 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CleRt_RS02580 IPR027304 Trigger factor/SurA domain superfamily CleRt_RS02580 IPR036611 Trigger factor ribosome-binding domain superfamily CleRt_RS02580 IPR008881 Trigger factor, ribosome-binding, bacterial CleRt_RS02580 IPR037041 Trigger factor, C-terminal domain superfamily CleRt_RS02580 IPR008880 Trigger factor, C-terminal CleRt_RS02580 IPR005215 Trigger factor CleRt_RS02585 IPR001907 ATP-dependent Clp protease proteolytic subunit CleRt_RS02585 IPR029045 ClpP/crotonase-like domain superfamily CleRt_RS02585 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CleRt_RS02585 IPR018215 ClpP, Ser active site CleRt_RS02590 IPR003959 ATPase, AAA-type, core CleRt_RS02590 IPR019489 Clp ATPase, C-terminal CleRt_RS02590 IPR004487 Clp protease, ATP-binding subunit ClpX CleRt_RS02590 IPR038366 Zinc finger, ClpX C4-type superfamily CleRt_RS02590 IPR003593 AAA+ ATPase domain CleRt_RS02590 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS02590 IPR010603 Zinc finger, ClpX C4-type CleRt_RS02595 IPR008269 Peptidase S16, Lon proteolytic domain CleRt_RS02595 IPR027065 Lon protease CleRt_RS02595 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS02595 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS02595 IPR015947 PUA-like superfamily CleRt_RS02595 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS02595 IPR003111 Lon, substrate-binding domain CleRt_RS02595 IPR008268 Peptidase S16, active site CleRt_RS02595 IPR003593 AAA+ ATPase domain CleRt_RS02595 IPR003959 ATPase, AAA-type, core CleRt_RS02595 IPR027543 Lon protease, bacterial CleRt_RS02595 IPR004815 Lon protease, bacterial/eukaryotic-type CleRt_RS02600 IPR035068 Metalloprotease TldD/PmbA, N-terminal CleRt_RS02600 IPR036059 Metalloprotease TldD/PmbA superfamily CleRt_RS02600 IPR002510 Metalloprotease TldD/PmbA CleRt_RS02610 IPR000032 Phosphocarrier protein HPr-like CleRt_RS02610 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CleRt_RS02610 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CleRt_RS02610 IPR035895 HPr-like superfamily CleRt_RS02615 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CleRt_RS02615 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal CleRt_RS02615 IPR011104 HPr kinase/phosphorylase, C-terminal CleRt_RS02615 IPR003755 HPr(Ser) kinase/phosphorylase CleRt_RS02620 IPR003489 Ribosome hibernation promoting factor/RaiA CleRt_RS02620 IPR036567 Ribosome hibernation promotion factor-like CleRt_RS02625 IPR003439 ABC transporter-like CleRt_RS02625 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CleRt_RS02625 IPR030921 LPS export ABC transporter, ATP-binding protein LptB CleRt_RS02625 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS02625 IPR017871 ABC transporter, conserved site CleRt_RS02625 IPR003593 AAA+ ATPase domain CleRt_RS02640 IPR023214 HAD superfamily CleRt_RS02640 IPR010023 KdsC family CleRt_RS02640 IPR036412 HAD-like superfamily CleRt_RS02645 IPR000644 CBS domain CleRt_RS02645 IPR001347 Sugar isomerase (SIS) CleRt_RS02645 IPR035474 KpsF-like, SIS domain CleRt_RS02645 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type CleRt_RS02650 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl CleRt_RS02650 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS02650 IPR017871 ABC transporter, conserved site CleRt_RS02650 IPR003439 ABC transporter-like CleRt_RS02650 IPR003593 AAA+ ATPase domain CleRt_RS02655 IPR003453 ABC transport permease subunit MlaE, Proteobacteria CleRt_RS02655 IPR030802 ABC transporter permease MalE CleRt_RS02660 IPR003399 Mce/MlaD CleRt_RS02660 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD CleRt_RS02665 IPR042245 Tgt2/MlaC superfamily CleRt_RS02665 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC CleRt_RS02675 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CleRt_RS02675 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CleRt_RS02675 IPR001986 Enolpyruvate transferase domain CleRt_RS02675 IPR036968 Enolpyruvate transferase domain superfamily CleRt_RS02690 IPR001478 PDZ domain CleRt_RS02690 IPR001940 Peptidase S1C CleRt_RS02690 IPR009003 Peptidase S1, PA clan CleRt_RS02690 IPR011782 Peptidase S1C, Do CleRt_RS02690 IPR036034 PDZ superfamily CleRt_RS02700 IPR006145 Pseudouridine synthase, RsuA/RluA CleRt_RS02700 IPR002942 RNA-binding S4 domain CleRt_RS02700 IPR036986 RNA-binding S4 domain superfamily CleRt_RS02700 IPR006225 Pseudouridine synthase, RluC/RluD CleRt_RS02700 IPR020103 Pseudouridine synthase, catalytic domain superfamily CleRt_RS02700 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CleRt_RS02705 IPR017689 Outer membrane protein assembly factor BamD CleRt_RS02705 IPR011990 Tetratricopeptide-like helical domain superfamily CleRt_RS02705 IPR039565 Outer membrane lipoprotein BamD-like CleRt_RS02730 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type CleRt_RS02730 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CleRt_RS02730 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CleRt_RS02730 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CleRt_RS02730 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CleRt_RS02730 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CleRt_RS02730 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CleRt_RS02735 IPR000873 AMP-dependent synthetase/ligase CleRt_RS02735 IPR025110 AMP-binding enzyme, C-terminal domain CleRt_RS02735 IPR042099 AMP-dependent synthetase-like superfamily CleRt_RS02735 IPR020845 AMP-binding, conserved site CleRt_RS02740 IPR042099 AMP-dependent synthetase-like superfamily CleRt_RS02740 IPR000873 AMP-dependent synthetase/ligase CleRt_RS02740 IPR020845 AMP-binding, conserved site CleRt_RS02740 IPR025110 AMP-binding enzyme, C-terminal domain CleRt_RS02770 IPR005784 D-amino acid aminotransferase CleRt_RS02770 IPR036038 Aminotransferase-like, PLP-dependent enzymes CleRt_RS02770 IPR018300 Aminotransferase, class IV, conserved site CleRt_RS02770 IPR001544 Aminotransferase class IV CleRt_RS02775 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain CleRt_RS02775 IPR017926 Glutamine amidotransferase CleRt_RS02775 IPR029062 Class I glutamine amidotransferase-like CleRt_RS02780 IPR006805 Anthranilate synthase component I, N-terminal CleRt_RS02780 IPR015890 Chorismate-utilising enzyme, C-terminal CleRt_RS02780 IPR019999 Anthranilate synthase component I-like CleRt_RS02780 IPR005801 ADC synthase CleRt_RS02780 IPR005802 Aminodeoxychorismate synthase, component I CleRt_RS02805 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CleRt_RS02805 IPR002320 Threonine-tRNA ligase, class IIa CleRt_RS02805 IPR012676 TGS-like CleRt_RS02805 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CleRt_RS02805 IPR004095 TGS CleRt_RS02805 IPR036621 Anticodon-binding domain superfamily CleRt_RS02805 IPR012675 Beta-grasp domain superfamily CleRt_RS02805 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS02805 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CleRt_RS02805 IPR004154 Anticodon-binding CleRt_RS02805 IPR033728 Threonine-tRNA ligase catalytic core domain CleRt_RS02810 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily CleRt_RS02810 IPR019813 Translation initiation factor 3, conserved site CleRt_RS02810 IPR001288 Translation initiation factor 3 CleRt_RS02810 IPR019815 Translation initiation factor 3, C-terminal CleRt_RS02810 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily CleRt_RS02810 IPR019814 Translation initiation factor 3, N-terminal CleRt_RS02815 IPR037229 Ribosomal protein L35 superfamily CleRt_RS02815 IPR001706 Ribosomal protein L35, non-mitochondrial CleRt_RS02815 IPR018265 Ribosomal protein L35, conserved site CleRt_RS02815 IPR021137 Ribosomal protein L35 CleRt_RS02820 IPR035566 Ribosomal protein L20, C-terminal CleRt_RS02820 IPR005813 Ribosomal protein L20 CleRt_RS02825 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CleRt_RS02825 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit CleRt_RS02825 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial CleRt_RS02825 IPR002319 Phenylalanyl-tRNA synthetase CleRt_RS02825 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal CleRt_RS02825 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS02830 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit CleRt_RS02830 IPR002547 tRNA-binding domain CleRt_RS02830 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CleRt_RS02830 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain CleRt_RS02830 IPR005147 tRNA synthetase, B5-domain CleRt_RS02830 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS02830 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CleRt_RS02830 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily CleRt_RS02830 IPR005121 Ferrodoxin-fold anticodon-binding domain CleRt_RS02830 IPR009061 Putative DNA-binding domain superfamily CleRt_RS02830 IPR005146 B3/B4 tRNA-binding domain CleRt_RS02835 IPR000119 Histone-like DNA-binding protein CleRt_RS02835 IPR005684 Integration host factor, alpha subunit CleRt_RS02835 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CleRt_RS02835 IPR020816 Histone-like DNA-binding protein, conserved site CleRt_RS02840 IPR036594 Methionine synthase domain CleRt_RS02840 IPR000551 MerR-type HTH domain CleRt_RS02840 IPR036724 Cobalamin-binding domain superfamily CleRt_RS02840 IPR006158 Cobalamin (vitamin B12)-binding domain CleRt_RS02840 IPR009061 Putative DNA-binding domain superfamily CleRt_RS02880 IPR006153 Cation/H+ exchanger CleRt_RS02880 IPR038770 Sodium/solute symporter superfamily CleRt_RS02900 IPR003329 Acylneuraminate cytidylyltransferase CleRt_RS02900 IPR029044 Nucleotide-diphospho-sugar transferases CleRt_RS02900 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase CleRt_RS02925 IPR000184 Bacterial surface antigen (D15) CleRt_RS02925 IPR034746 POTRA domain CleRt_RS02925 IPR023707 Outer membrane protein assembly factor BamA CleRt_RS02925 IPR039910 Surface antigen D15-like CleRt_RS02925 IPR010827 POTRA domain, BamA/TamA-like CleRt_RS02935 IPR011004 Trimeric LpxA-like superfamily CleRt_RS02935 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region CleRt_RS02935 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD CleRt_RS02935 IPR001451 Hexapeptide repeat CleRt_RS02940 IPR029069 HotDog domain superfamily CleRt_RS02940 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ CleRt_RS02940 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ CleRt_RS02945 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal CleRt_RS02945 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase CleRt_RS02945 IPR018357 Hexapeptide transferase, conserved site CleRt_RS02945 IPR011004 Trimeric LpxA-like superfamily CleRt_RS02945 IPR001451 Hexapeptide repeat CleRt_RS02945 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily CleRt_RS02955 IPR003835 Glycosyl transferase, family 19 CleRt_RS02960 IPR000683 Oxidoreductase, N-terminal CleRt_RS02960 IPR036291 NAD(P)-binding domain superfamily CleRt_RS02960 IPR004104 Oxidoreductase, C-terminal CleRt_RS02975 IPR016192 APOBEC/CMP deaminase, zinc-binding CleRt_RS02975 IPR016193 Cytidine deaminase-like CleRt_RS02975 IPR028883 tRNA-specific adenosine deaminase CleRt_RS02975 IPR002125 Cytidine and deoxycytidylate deaminase domain CleRt_RS02980 IPR036649 Inorganic pyrophosphatase superfamily CleRt_RS02980 IPR008162 Inorganic pyrophosphatase CleRt_RS02985 IPR029041 FAD-linked oxidoreductase-like CleRt_RS02985 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain CleRt_RS02985 IPR016162 Aldehyde dehydrogenase, N-terminal CleRt_RS02985 IPR016163 Aldehyde dehydrogenase, C-terminal CleRt_RS02985 IPR024090 Proline dehydrogenase PutA, domain I CleRt_RS02985 IPR015590 Aldehyde dehydrogenase domain CleRt_RS02985 IPR016161 Aldehyde/histidinol dehydrogenase CleRt_RS02985 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 CleRt_RS02985 IPR002872 Proline dehydrogenase domain CleRt_RS02985 IPR025703 Bifunctional protein PutA CleRt_RS02985 IPR013321 Arc-type ribbon-helix-helix CleRt_RS02985 IPR024089 Proline dehydrogenase PutA, domain I/II CleRt_RS02985 IPR024082 Proline dehydrogenase PutA, domain II CleRt_RS02985 IPR016160 Aldehyde dehydrogenase, cysteine active site CleRt_RS02985 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CleRt_RS02985 IPR010985 Ribbon-helix-helix CleRt_RS03015 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CleRt_RS03015 IPR019247 Histidine kinase BarA, N-terminal CleRt_RS03015 IPR036641 HPT domain superfamily CleRt_RS03015 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CleRt_RS03015 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain CleRt_RS03015 IPR001789 Signal transduction response regulator, receiver domain CleRt_RS03015 IPR003660 HAMP domain CleRt_RS03015 IPR011006 CheY-like superfamily CleRt_RS03015 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CleRt_RS03015 IPR003594 Histidine kinase/HSP90-like ATPase CleRt_RS03015 IPR005467 Histidine kinase domain CleRt_RS03015 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CleRt_RS03025 IPR036625 E3-binding domain superfamily CleRt_RS03025 IPR000089 Biotin/lipoyl attachment CleRt_RS03025 IPR004167 Peripheral subunit-binding domain CleRt_RS03025 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CleRt_RS03025 IPR011053 Single hybrid motif CleRt_RS03025 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CleRt_RS03025 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CleRt_RS03030 IPR029061 Thiamin diphosphate-binding fold CleRt_RS03030 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CleRt_RS03030 IPR005475 Transketolase-like, pyrimidine-binding domain CleRt_RS03030 IPR033248 Transketolase, C-terminal domain CleRt_RS03035 IPR029061 Thiamin diphosphate-binding fold CleRt_RS03035 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha CleRt_RS03035 IPR001017 Dehydrogenase, E1 component CleRt_RS03040 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase CleRt_RS03040 IPR033524 Leu/Phe/Val dehydrogenases active site CleRt_RS03040 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal CleRt_RS03040 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain CleRt_RS03040 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal CleRt_RS03040 IPR036291 NAD(P)-binding domain superfamily CleRt_RS03050 IPR016193 Cytidine deaminase-like CleRt_RS03050 IPR024072 Dihydrofolate reductase-like domain superfamily CleRt_RS03050 IPR002125 Cytidine and deoxycytidylate deaminase domain CleRt_RS03050 IPR004794 Riboflavin biosynthesis protein RibD CleRt_RS03050 IPR016192 APOBEC/CMP deaminase, zinc-binding CleRt_RS03050 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CleRt_RS03050 IPR011549 Riboflavin-specific deaminase, C-terminal CleRt_RS03055 IPR026017 Lumazine-binding domain CleRt_RS03055 IPR001783 Lumazine-binding protein CleRt_RS03055 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CleRt_RS03055 IPR017938 Riboflavin synthase-like beta-barrel CleRt_RS03060 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB CleRt_RS03060 IPR032677 GTP cyclohydrolase II CleRt_RS03060 IPR000926 GTP cyclohydrolase II, RibA CleRt_RS03060 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CleRt_RS03060 IPR016299 Riboflavin biosynthesis protein RibBA CleRt_RS03060 IPR036144 RibA-like superfamily CleRt_RS03065 IPR034964 Lumazine synthase CleRt_RS03065 IPR036467 Lumazine/riboflavin synthase superfamily CleRt_RS03065 IPR002180 Lumazine/riboflavin synthase CleRt_RS03070 IPR002549 Transmembrane protein TqsA-like CleRt_RS03075 IPR004401 Nucleoid-associated protein YbaB/EbfC family CleRt_RS03075 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CleRt_RS03080 IPR000093 DNA recombination protein RecR CleRt_RS03080 IPR023627 Recombination protein RecR CleRt_RS03080 IPR023628 Recombination protein RecR, C4-type zinc finger CleRt_RS03080 IPR015967 Recombination protein RecR, conserved site CleRt_RS03080 IPR006171 TOPRIM domain CleRt_RS03080 IPR034137 RecR, TOPRIM domain CleRt_RS03090 IPR022754 DNA polymerase III, gamma subunit, domain III CleRt_RS03090 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV CleRt_RS03090 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03090 IPR021029 DNA polymerase III, tau subunit, domain V CleRt_RS03090 IPR012763 DNA polymerase III, subunit gamma/ tau CleRt_RS03090 IPR003593 AAA+ ATPase domain CleRt_RS03090 IPR001270 ClpA/B family CleRt_RS03090 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CleRt_RS03090 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily CleRt_RS03110 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 CleRt_RS03110 IPR001451 Hexapeptide repeat CleRt_RS03110 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family CleRt_RS03110 IPR011004 Trimeric LpxA-like superfamily CleRt_RS03110 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily CleRt_RS03130 IPR005835 Nucleotidyl transferase domain CleRt_RS03130 IPR029044 Nucleotide-diphospho-sugar transferases CleRt_RS03130 IPR014710 RmlC-like jelly roll fold CleRt_RS03130 IPR011051 RmlC-like cupin domain superfamily CleRt_RS03130 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase CleRt_RS03130 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal CleRt_RS03140 IPR017932 Glutamine amidotransferase type 2 domain CleRt_RS03140 IPR001962 Asparagine synthase CleRt_RS03140 IPR006426 Asparagine synthase, glutamine-hydrolyzing CleRt_RS03140 IPR029055 Nucleophile aminohydrolases, N-terminal CleRt_RS03140 IPR033738 Asparagine synthase, N-terminal domain CleRt_RS03165 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03165 IPR003439 ABC transporter-like CleRt_RS03165 IPR003593 AAA+ ATPase domain CleRt_RS03190 IPR000362 Fumarate lyase family CleRt_RS03190 IPR009049 Argininosuccinate lyase CleRt_RS03190 IPR024083 Fumarase/histidase, N-terminal CleRt_RS03190 IPR020557 Fumarate lyase, conserved site CleRt_RS03190 IPR022761 Fumarate lyase, N-terminal CleRt_RS03190 IPR029419 Argininosuccinate lyase, C-terminal CleRt_RS03190 IPR008948 L-Aspartase-like CleRt_RS03210 IPR013785 Aldolase-type TIM barrel CleRt_RS03210 IPR004136 Nitronate monooxygenase CleRt_RS03220 IPR013785 Aldolase-type TIM barrel CleRt_RS03220 IPR004136 Nitronate monooxygenase CleRt_RS03260 IPR029066 PLP-binding barrel CleRt_RS03260 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal CleRt_RS03260 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal CleRt_RS03260 IPR000183 Ornithine/DAP/Arg decarboxylase CleRt_RS03260 IPR002986 Diaminopimelate decarboxylase, LysA CleRt_RS03260 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site CleRt_RS03260 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CleRt_RS03265 IPR029035 DHS-like NAD/FAD-binding domain superfamily CleRt_RS03265 IPR002773 Deoxyhypusine synthase CleRt_RS03265 IPR023496 Deoxyhypusine synthase-like CleRt_RS03265 IPR036982 Deoxyhypusine synthase superfamily CleRt_RS03270 IPR005925 Agmatinase-related CleRt_RS03270 IPR023696 Ureohydrolase domain superfamily CleRt_RS03270 IPR020855 Ureohydrolase, manganese-binding site CleRt_RS03270 IPR006035 Ureohydrolase CleRt_RS03280 IPR029035 DHS-like NAD/FAD-binding domain superfamily CleRt_RS03280 IPR029061 Thiamin diphosphate-binding fold CleRt_RS03280 IPR012000 Thiamine pyrophosphate enzyme, central domain CleRt_RS03280 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CleRt_RS03280 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CleRt_RS03280 IPR000399 TPP-binding enzyme, conserved site CleRt_RS03315 IPR008880 Trigger factor, C-terminal CleRt_RS03315 IPR005215 Trigger factor CleRt_RS03315 IPR037041 Trigger factor, C-terminal domain superfamily CleRt_RS03315 IPR008881 Trigger factor, ribosome-binding, bacterial CleRt_RS03315 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CleRt_RS03315 IPR036611 Trigger factor ribosome-binding domain superfamily CleRt_RS03315 IPR027304 Trigger factor/SurA domain superfamily CleRt_RS03320 IPR029045 ClpP/crotonase-like domain superfamily CleRt_RS03320 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CleRt_RS03320 IPR001907 ATP-dependent Clp protease proteolytic subunit CleRt_RS03320 IPR018215 ClpP, Ser active site CleRt_RS03325 IPR010603 Zinc finger, ClpX C4-type CleRt_RS03325 IPR038366 Zinc finger, ClpX C4-type superfamily CleRt_RS03325 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03325 IPR004487 Clp protease, ATP-binding subunit ClpX CleRt_RS03325 IPR019489 Clp ATPase, C-terminal CleRt_RS03325 IPR003959 ATPase, AAA-type, core CleRt_RS03325 IPR003593 AAA+ ATPase domain CleRt_RS03330 IPR008268 Peptidase S16, active site CleRt_RS03330 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03330 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS03330 IPR015947 PUA-like superfamily CleRt_RS03330 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS03330 IPR027543 Lon protease, bacterial CleRt_RS03330 IPR008269 Peptidase S16, Lon proteolytic domain CleRt_RS03330 IPR004815 Lon protease, bacterial/eukaryotic-type CleRt_RS03330 IPR003959 ATPase, AAA-type, core CleRt_RS03330 IPR027065 Lon protease CleRt_RS03330 IPR003111 Lon, substrate-binding domain CleRt_RS03330 IPR003593 AAA+ ATPase domain CleRt_RS03335 IPR035068 Metalloprotease TldD/PmbA, N-terminal CleRt_RS03335 IPR002510 Metalloprotease TldD/PmbA CleRt_RS03335 IPR036059 Metalloprotease TldD/PmbA superfamily CleRt_RS03345 IPR000032 Phosphocarrier protein HPr-like CleRt_RS03345 IPR035895 HPr-like superfamily CleRt_RS03345 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CleRt_RS03345 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CleRt_RS03350 IPR003755 HPr(Ser) kinase/phosphorylase CleRt_RS03350 IPR011104 HPr kinase/phosphorylase, C-terminal CleRt_RS03350 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal CleRt_RS03350 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CleRt_RS03355 IPR003489 Ribosome hibernation promoting factor/RaiA CleRt_RS03355 IPR036567 Ribosome hibernation promotion factor-like CleRt_RS03360 IPR030921 LPS export ABC transporter, ATP-binding protein LptB CleRt_RS03360 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CleRt_RS03360 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03360 IPR017871 ABC transporter, conserved site CleRt_RS03360 IPR003439 ABC transporter-like CleRt_RS03360 IPR003593 AAA+ ATPase domain CleRt_RS03375 IPR036412 HAD-like superfamily CleRt_RS03375 IPR023214 HAD superfamily CleRt_RS03375 IPR010023 KdsC family CleRt_RS03380 IPR001347 Sugar isomerase (SIS) CleRt_RS03380 IPR035474 KpsF-like, SIS domain CleRt_RS03380 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type CleRt_RS03380 IPR000644 CBS domain CleRt_RS03385 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03385 IPR003593 AAA+ ATPase domain CleRt_RS03385 IPR003439 ABC transporter-like CleRt_RS03385 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl CleRt_RS03385 IPR017871 ABC transporter, conserved site CleRt_RS03390 IPR003453 ABC transport permease subunit MlaE, Proteobacteria CleRt_RS03390 IPR030802 ABC transporter permease MalE CleRt_RS03395 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD CleRt_RS03395 IPR003399 Mce/MlaD CleRt_RS03400 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC CleRt_RS03400 IPR042245 Tgt2/MlaC superfamily CleRt_RS03410 IPR001986 Enolpyruvate transferase domain CleRt_RS03410 IPR036968 Enolpyruvate transferase domain superfamily CleRt_RS03410 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CleRt_RS03410 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CleRt_RS03425 IPR001940 Peptidase S1C CleRt_RS03425 IPR009003 Peptidase S1, PA clan CleRt_RS03425 IPR011782 Peptidase S1C, Do CleRt_RS03425 IPR036034 PDZ superfamily CleRt_RS03425 IPR001478 PDZ domain CleRt_RS03435 IPR006225 Pseudouridine synthase, RluC/RluD CleRt_RS03435 IPR020103 Pseudouridine synthase, catalytic domain superfamily CleRt_RS03435 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CleRt_RS03435 IPR006145 Pseudouridine synthase, RsuA/RluA CleRt_RS03435 IPR002942 RNA-binding S4 domain CleRt_RS03435 IPR036986 RNA-binding S4 domain superfamily CleRt_RS03440 IPR039565 Outer membrane lipoprotein BamD-like CleRt_RS03440 IPR011990 Tetratricopeptide-like helical domain superfamily CleRt_RS03440 IPR017689 Outer membrane protein assembly factor BamD CleRt_RS03465 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type CleRt_RS03465 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CleRt_RS03465 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CleRt_RS03465 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CleRt_RS03465 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CleRt_RS03465 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CleRt_RS03465 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CleRt_RS03470 IPR042099 AMP-dependent synthetase-like superfamily CleRt_RS03470 IPR000873 AMP-dependent synthetase/ligase CleRt_RS03470 IPR020845 AMP-binding, conserved site CleRt_RS03470 IPR025110 AMP-binding enzyme, C-terminal domain CleRt_RS03475 IPR042099 AMP-dependent synthetase-like superfamily CleRt_RS03475 IPR000873 AMP-dependent synthetase/ligase CleRt_RS03475 IPR025110 AMP-binding enzyme, C-terminal domain CleRt_RS03475 IPR020845 AMP-binding, conserved site CleRt_RS03505 IPR001544 Aminotransferase class IV CleRt_RS03505 IPR005784 D-amino acid aminotransferase CleRt_RS03505 IPR036038 Aminotransferase-like, PLP-dependent enzymes CleRt_RS03505 IPR018300 Aminotransferase, class IV, conserved site CleRt_RS03510 IPR029062 Class I glutamine amidotransferase-like CleRt_RS03510 IPR017926 Glutamine amidotransferase CleRt_RS03510 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain CleRt_RS03515 IPR015890 Chorismate-utilising enzyme, C-terminal CleRt_RS03515 IPR006805 Anthranilate synthase component I, N-terminal CleRt_RS03515 IPR005802 Aminodeoxychorismate synthase, component I CleRt_RS03515 IPR005801 ADC synthase CleRt_RS03515 IPR019999 Anthranilate synthase component I-like CleRt_RS03540 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CleRt_RS03540 IPR033728 Threonine-tRNA ligase catalytic core domain CleRt_RS03540 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CleRt_RS03540 IPR002320 Threonine-tRNA ligase, class IIa CleRt_RS03540 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CleRt_RS03540 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS03540 IPR004154 Anticodon-binding CleRt_RS03540 IPR036621 Anticodon-binding domain superfamily CleRt_RS03540 IPR012675 Beta-grasp domain superfamily CleRt_RS03540 IPR004095 TGS CleRt_RS03540 IPR012676 TGS-like CleRt_RS03545 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily CleRt_RS03545 IPR019813 Translation initiation factor 3, conserved site CleRt_RS03545 IPR001288 Translation initiation factor 3 CleRt_RS03545 IPR019815 Translation initiation factor 3, C-terminal CleRt_RS03545 IPR019814 Translation initiation factor 3, N-terminal CleRt_RS03545 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily CleRt_RS03550 IPR021137 Ribosomal protein L35 CleRt_RS03550 IPR018265 Ribosomal protein L35, conserved site CleRt_RS03550 IPR001706 Ribosomal protein L35, non-mitochondrial CleRt_RS03550 IPR037229 Ribosomal protein L35 superfamily CleRt_RS03555 IPR035566 Ribosomal protein L20, C-terminal CleRt_RS03555 IPR005813 Ribosomal protein L20 CleRt_RS03560 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS03560 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit CleRt_RS03560 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal CleRt_RS03560 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial CleRt_RS03560 IPR002319 Phenylalanyl-tRNA synthetase CleRt_RS03560 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CleRt_RS03565 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily CleRt_RS03565 IPR005146 B3/B4 tRNA-binding domain CleRt_RS03565 IPR009061 Putative DNA-binding domain superfamily CleRt_RS03565 IPR005121 Ferrodoxin-fold anticodon-binding domain CleRt_RS03565 IPR005147 tRNA synthetase, B5-domain CleRt_RS03565 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CleRt_RS03565 IPR002547 tRNA-binding domain CleRt_RS03565 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain CleRt_RS03565 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CleRt_RS03565 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit CleRt_RS03565 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS03570 IPR020816 Histone-like DNA-binding protein, conserved site CleRt_RS03570 IPR000119 Histone-like DNA-binding protein CleRt_RS03570 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CleRt_RS03570 IPR005684 Integration host factor, alpha subunit CleRt_RS03575 IPR036594 Methionine synthase domain CleRt_RS03575 IPR009061 Putative DNA-binding domain superfamily CleRt_RS03575 IPR000551 MerR-type HTH domain CleRt_RS03575 IPR006158 Cobalamin (vitamin B12)-binding domain CleRt_RS03575 IPR036724 Cobalamin-binding domain superfamily CleRt_RS03615 IPR038770 Sodium/solute symporter superfamily CleRt_RS03615 IPR006153 Cation/H+ exchanger CleRt_RS03635 IPR003329 Acylneuraminate cytidylyltransferase CleRt_RS03635 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase CleRt_RS03635 IPR029044 Nucleotide-diphospho-sugar transferases CleRt_RS03670 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CleRt_RS03670 IPR036986 RNA-binding S4 domain superfamily CleRt_RS03670 IPR002942 RNA-binding S4 domain CleRt_RS03670 IPR020103 Pseudouridine synthase, catalytic domain superfamily CleRt_RS03670 IPR006145 Pseudouridine synthase, RsuA/RluA CleRt_RS03670 IPR006225 Pseudouridine synthase, RluC/RluD CleRt_RS03690 IPR002677 Ribosomal protein L32p CleRt_RS03690 IPR011332 Zinc-binding ribosomal protein CleRt_RS03695 IPR003664 Fatty acid synthesis PlsX protein CleRt_RS03695 IPR012281 Phospholipid biosynthesis protein, PlsX-like CleRt_RS03700 IPR016039 Thiolase-like CleRt_RS03700 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CleRt_RS03700 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal CleRt_RS03700 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CleRt_RS03705 IPR024925 Malonyl CoA-acyl carrier protein transacylase CleRt_RS03705 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CleRt_RS03705 IPR014043 Acyl transferase CleRt_RS03705 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type CleRt_RS03705 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CleRt_RS03705 IPR001227 Acyl transferase domain superfamily CleRt_RS03710 IPR020904 Short-chain dehydrogenase/reductase, conserved site CleRt_RS03710 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CleRt_RS03710 IPR002347 Short-chain dehydrogenase/reductase SDR CleRt_RS03710 IPR036291 NAD(P)-binding domain superfamily CleRt_RS03715 IPR006162 Phosphopantetheine attachment site CleRt_RS03715 IPR009081 Phosphopantetheine binding ACP domain CleRt_RS03715 IPR003231 Acyl carrier protein (ACP) CleRt_RS03715 IPR036736 ACP-like superfamily CleRt_RS03720 IPR000794 Beta-ketoacyl synthase CleRt_RS03720 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 CleRt_RS03720 IPR016039 Thiolase-like CleRt_RS03720 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CleRt_RS03720 IPR014030 Beta-ketoacyl synthase, N-terminal CleRt_RS03720 IPR018201 Beta-ketoacyl synthase, active site CleRt_RS03720 IPR014031 Beta-ketoacyl synthase, C-terminal CleRt_RS03730 IPR039430 Thymidylate kinase-like domain CleRt_RS03730 IPR018094 Thymidylate kinase CleRt_RS03730 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03735 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03735 IPR004622 DNA polymerase III, delta prime subunit CleRt_RS03735 IPR015199 DNA polymerase III, delta subunit, C-terminal CleRt_RS03740 IPR001130 TatD family CleRt_RS03740 IPR018228 Deoxyribonuclease, TatD-related, conserved site CleRt_RS03740 IPR015991 Uncharacterised hydrolase TatD-type CleRt_RS03740 IPR032466 Metal-dependent hydrolase CleRt_RS03750 IPR005279 Dipeptide/tripeptide permease CleRt_RS03750 IPR036259 MFS transporter superfamily CleRt_RS03750 IPR000109 Proton-dependent oligopeptide transporter family CleRt_RS03750 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CleRt_RS03750 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B CleRt_RS03760 IPR003156 DHHA1 domain CleRt_RS03760 IPR004610 Bacterial RecJ exonuclease CleRt_RS03760 IPR041122 RecJ, OB domain CleRt_RS03760 IPR038763 DHH phosphoesterase superfamily CleRt_RS03760 IPR001667 DDH domain CleRt_RS03810 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CleRt_RS03810 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS03810 IPR004839 Aminotransferase, class I/classII CleRt_RS03810 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS03810 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS03815 IPR001943 UVR domain CleRt_RS03815 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03815 IPR001650 Helicase, C-terminal CleRt_RS03815 IPR014001 Helicase superfamily 1/2, ATP-binding domain CleRt_RS03815 IPR036876 UVR domain superfamily CleRt_RS03815 IPR006935 Helicase/UvrB, N-terminal CleRt_RS03815 IPR041471 UvrB, interaction domain CleRt_RS03815 IPR024759 UvrB, YAD/RRR-motif-containing domain CleRt_RS03815 IPR004807 UvrABC system, subunit B CleRt_RS03820 IPR013785 Aldolase-type TIM barrel CleRt_RS03820 IPR000891 Pyruvate carboxyltransferase CleRt_RS03820 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site CleRt_RS03825 IPR011059 Metal-dependent hydrolase, composite domain superfamily CleRt_RS03825 IPR032466 Metal-dependent hydrolase CleRt_RS03825 IPR023512 Deaminase MtaD/DadD CleRt_RS03825 IPR006680 Amidohydrolase-related CleRt_RS03830 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CleRt_RS03830 IPR005743 DNA gyrase, subunit A CleRt_RS03830 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat CleRt_RS03830 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CleRt_RS03830 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CleRt_RS03830 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CleRt_RS03830 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CleRt_RS03835 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CleRt_RS03835 IPR022278 Phosphoserine aminotransferase CleRt_RS03835 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS03835 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS03835 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS03835 IPR000192 Aminotransferase class V domain CleRt_RS03840 IPR001986 Enolpyruvate transferase domain CleRt_RS03840 IPR036968 Enolpyruvate transferase domain superfamily CleRt_RS03840 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CleRt_RS03840 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase CleRt_RS03840 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site CleRt_RS03845 IPR011994 Cytidylate kinase domain CleRt_RS03845 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03845 IPR003136 Cytidylate kinase CleRt_RS03850 IPR000110 Ribosomal protein S1 CleRt_RS03850 IPR022967 RNA-binding domain, S1 CleRt_RS03850 IPR003029 S1 domain CleRt_RS03850 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS03860 IPR019734 Tetratricopeptide repeat CleRt_RS03860 IPR011990 Tetratricopeptide-like helical domain superfamily CleRt_RS03860 IPR041166 LapB, rubredoxin metal binding domain CleRt_RS03860 IPR013026 Tetratricopeptide repeat-containing domain CleRt_RS03860 IPR030865 Lipopolysaccharide assembly protein B CleRt_RS03865 IPR001754 Orotidine 5'-phosphate decarboxylase domain CleRt_RS03865 IPR011060 Ribulose-phosphate binding barrel CleRt_RS03865 IPR013785 Aldolase-type TIM barrel CleRt_RS03865 IPR018089 Orotidine 5'-phosphate decarboxylase, active site CleRt_RS03865 IPR014732 Orotidine 5'-phosphate decarboxylase CleRt_RS03870 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CleRt_RS03870 IPR000715 Glycosyl transferase, family 4 CleRt_RS03870 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase CleRt_RS03885 IPR010280 (Uracil-5)-methyltransferase family CleRt_RS03885 IPR002792 TRAM domain CleRt_RS03885 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS03885 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS03885 IPR030391 RNA methyltransferase TrmA, conserved site CleRt_RS03885 IPR030390 RNA methyltransferase TrmA, active site CleRt_RS03885 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD CleRt_RS03890 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD CleRt_RS03890 IPR010280 (Uracil-5)-methyltransferase family CleRt_RS03890 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS03890 IPR002792 TRAM domain CleRt_RS03890 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS03890 IPR030391 RNA methyltransferase TrmA, conserved site CleRt_RS03890 IPR030390 RNA methyltransferase TrmA, active site CleRt_RS03895 IPR001478 PDZ domain CleRt_RS03895 IPR041489 PDZ domain 6 CleRt_RS03895 IPR036034 PDZ superfamily CleRt_RS03895 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase CleRt_RS03895 IPR008915 Peptidase M50 CleRt_RS03910 IPR005279 Dipeptide/tripeptide permease CleRt_RS03910 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A CleRt_RS03910 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CleRt_RS03910 IPR000109 Proton-dependent oligopeptide transporter family CleRt_RS03910 IPR036259 MFS transporter superfamily CleRt_RS03915 IPR003395 RecF/RecN/SMC, N-terminal CleRt_RS03915 IPR011890 Structural maintenance of chromosomes protein, prokaryotic CleRt_RS03915 IPR036277 SMCs flexible hinge superfamily CleRt_RS03915 IPR010935 SMCs flexible hinge CleRt_RS03915 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS03915 IPR024704 Structural maintenance of chromosomes protein CleRt_RS03925 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type CleRt_RS03925 IPR004150 NAD-dependent DNA ligase, OB-fold CleRt_RS03925 IPR018239 NAD-dependent DNA ligase, active site CleRt_RS03925 IPR001357 BRCT domain CleRt_RS03925 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS03925 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CleRt_RS03925 IPR013840 NAD-dependent DNA ligase, N-terminal CleRt_RS03925 IPR036420 BRCT domain superfamily CleRt_RS03925 IPR013839 NAD-dependent DNA ligase, adenylation CleRt_RS03925 IPR001679 NAD-dependent DNA ligase CleRt_RS03925 IPR033136 NAD-dependent DNA ligase, conserved site CleRt_RS03925 IPR041663 DisA/LigA, helix-hairpin-helix motif CleRt_RS03925 IPR010994 RuvA domain 2-like CleRt_RS03955 IPR007156 LemA CleRt_RS03955 IPR023353 LemA-like domain superfamily CleRt_RS03960 IPR001915 Peptidase M48 CleRt_RS03960 IPR022919 Peptidase M48, protease HtpX, putative CleRt_RS03970 IPR023346 Lysozyme-like domain superfamily CleRt_RS03970 IPR031304 Transglycosylase SLT domain 2 CleRt_RS03970 IPR011757 Lytic transglycosylase MltB CleRt_RS03975 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CleRt_RS03975 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CleRt_RS03975 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB CleRt_RS03980 IPR017790 Penicillin-binding protein 2 CleRt_RS03980 IPR001460 Penicillin-binding protein, transpeptidase CleRt_RS03980 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CleRt_RS03980 IPR005311 Penicillin-binding protein, dimerisation domain CleRt_RS03980 IPR012338 Beta-lactamase/transpeptidase-like CleRt_RS03990 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CleRt_RS03995 IPR004821 Cytidyltransferase-like domain CleRt_RS03995 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS03995 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase CleRt_RS04010 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CleRt_RS04010 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS04010 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CleRt_RS04010 IPR025709 Leucyl-tRNA synthetase, editing domain CleRt_RS04010 IPR002302 Leucine-tRNA ligase CleRt_RS04010 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CleRt_RS04010 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CleRt_RS04010 IPR002300 Aminoacyl-tRNA synthetase, class Ia CleRt_RS04020 IPR036526 Carbon-nitrogen hydrolase superfamily CleRt_RS04020 IPR003010 Carbon-nitrogen hydrolase CleRt_RS04020 IPR004563 Apolipoprotein N-acyltransferase CleRt_RS04030 IPR023091 Metalloprotease catalytic domain superfamily, predicted CleRt_RS04030 IPR002036 Endoribonuclease YbeY CleRt_RS04030 IPR020549 Endoribonuclease YbeY, conserved site CleRt_RS04040 IPR002792 TRAM domain CleRt_RS04040 IPR023404 Radical SAM, alpha/beta horseshoe CleRt_RS04040 IPR007197 Radical SAM CleRt_RS04040 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB CleRt_RS04040 IPR013848 Methylthiotransferase, N-terminal CleRt_RS04040 IPR020612 Methylthiotransferase, conserved site CleRt_RS04040 IPR005839 Methylthiotransferase CleRt_RS04040 IPR006638 Elp3/MiaB/NifB CleRt_RS04040 IPR038135 Methylthiotransferase, N-terminal domain superfamily CleRt_RS04045 IPR002293 Amino acid/polyamine transporter I CleRt_RS04060 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CleRt_RS04060 IPR022569 Ferredoxin, C-terminal CleRt_RS04060 IPR000813 7Fe ferredoxin CleRt_RS04060 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CleRt_RS04065 IPR036065 BolA-like superfamily CleRt_RS04065 IPR002634 BolA protein CleRt_RS04070 IPR002109 Glutaredoxin CleRt_RS04070 IPR033658 Glutaredoxin, PICOT-like CleRt_RS04070 IPR014434 Monothiol glutaredoxin CleRt_RS04070 IPR004480 Monothiol glutaredoxin-related CleRt_RS04070 IPR036249 Thioredoxin-like superfamily CleRt_RS04080 IPR023753 FAD/NAD(P)-binding domain CleRt_RS04080 IPR036188 FAD/NAD(P)-binding domain superfamily CleRt_RS04080 IPR017938 Riboflavin synthase-like beta-barrel CleRt_RS04130 IPR015797 NUDIX hydrolase-like domain superfamily CleRt_RS04130 IPR020084 NUDIX hydrolase, conserved site CleRt_RS04130 IPR000086 NUDIX hydrolase domain CleRt_RS04135 IPR020583 Inositol monophosphatase, metal-binding site CleRt_RS04135 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ CleRt_RS04135 IPR000760 Inositol monophosphatase-like CleRt_RS04135 IPR020550 Inositol monophosphatase, conserved site CleRt_RS04140 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CleRt_RS04140 IPR001236 Lactate/malate dehydrogenase, N-terminal CleRt_RS04140 IPR022383 Lactate/malate dehydrogenase, C-terminal CleRt_RS04140 IPR001557 L-lactate/malate dehydrogenase CleRt_RS04140 IPR010945 Malate dehydrogenase, type 2 CleRt_RS04140 IPR036291 NAD(P)-binding domain superfamily CleRt_RS04140 IPR001252 Malate dehydrogenase, active site CleRt_RS04145 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD CleRt_RS04145 IPR017860 Peptidase M22, conserved site CleRt_RS04145 IPR017861 Kae1/TsaD family CleRt_RS04145 IPR000905 Gcp-like domain CleRt_RS04150 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY CleRt_RS04155 IPR013520 Exonuclease, RNase T/DNA polymerase III CleRt_RS04155 IPR022894 Oligoribonuclease CleRt_RS04155 IPR036397 Ribonuclease H superfamily CleRt_RS04155 IPR012337 Ribonuclease H-like superfamily CleRt_RS04165 IPR014017 UvrD-like DNA helicase, C-terminal CleRt_RS04165 IPR000212 DNA helicase, UvrD/REP type CleRt_RS04165 IPR011604 Exonuclease, phage-type/RecB, C-terminal CleRt_RS04165 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS04165 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CleRt_RS04165 IPR011335 Restriction endonuclease type II-like CleRt_RS04165 IPR014016 UvrD-like helicase, ATP-binding domain CleRt_RS04165 IPR034739 UvrD/AddA helicase, N-terminal CleRt_RS04165 IPR014152 DNA helicase subunit AddA CleRt_RS04185 IPR007780 NAD-glutamate dehydrogenase, bacteria CleRt_RS04185 IPR028971 NAD-glutamate dehydrogenase CleRt_RS04185 IPR036291 NAD(P)-binding domain superfamily CleRt_RS04210 IPR002220 DapA-like CleRt_RS04210 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA CleRt_RS04210 IPR020624 Schiff base-forming aldolase, conserved site CleRt_RS04210 IPR013785 Aldolase-type TIM barrel CleRt_RS04210 IPR020625 Schiff base-forming aldolase, active site CleRt_RS04245 IPR024084 Isopropylmalate dehydrogenase-like domain CleRt_RS04245 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic CleRt_RS04245 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CleRt_RS04255 IPR004368 Translation initiation factor IF-1 CleRt_RS04255 IPR022967 RNA-binding domain, S1 CleRt_RS04255 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS04255 IPR006196 RNA-binding domain, S1, IF1 type CleRt_RS04260 IPR036188 FAD/NAD(P)-binding domain superfamily CleRt_RS04260 IPR005982 Thioredoxin reductase CleRt_RS04260 IPR023753 FAD/NAD(P)-binding domain CleRt_RS04260 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CleRt_RS04265 IPR041027 FtsK alpha domain CleRt_RS04265 IPR025199 DNA translocase FtsK, 4TM region CleRt_RS04265 IPR036390 Winged helix DNA-binding domain superfamily CleRt_RS04265 IPR036388 Winged helix-like DNA-binding domain superfamily CleRt_RS04265 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS04265 IPR018541 FtsK gamma domain CleRt_RS04265 IPR002543 FtsK domain CleRt_RS04265 IPR003593 AAA+ ATPase domain CleRt_RS04270 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria CleRt_RS04270 IPR004564 Outer membrane lipoprotein carrier protein LolA-like CleRt_RS04270 IPR029046 Lipoprotein localisation LolA/LolB/LppX CleRt_RS04280 IPR003691 Putative fluoride ion transporter CrcB CleRt_RS04285 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily CleRt_RS04285 IPR015866 Serine-tRNA synthetase, type1, N-terminal CleRt_RS04285 IPR002317 Serine-tRNA ligase, type1 CleRt_RS04285 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS04285 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CleRt_RS04285 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CleRt_RS04285 IPR033729 Serine-tRNA ligase catalytic core domain CleRt_RS04295 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CleRt_RS04295 IPR010994 RuvA domain 2-like CleRt_RS04295 IPR001943 UVR domain CleRt_RS04295 IPR036876 UVR domain superfamily CleRt_RS04295 IPR004791 UvrABC system, subunit C CleRt_RS04295 IPR038476 UvrC homology region 2 superfamily CleRt_RS04295 IPR035901 GIY-YIG endonuclease superfamily CleRt_RS04295 IPR001162 UvrC family homology region CleRt_RS04295 IPR000305 GIY-YIG endonuclease CleRt_RS04300 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CleRt_RS04300 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial CleRt_RS04300 IPR000462 CDP-alcohol phosphatidyltransferase CleRt_RS04350 IPR036259 MFS transporter superfamily CleRt_RS04350 IPR011701 Major facilitator superfamily CleRt_RS04350 IPR020846 Major facilitator superfamily domain CleRt_RS04350 IPR004737 Nitrate transporter CleRt_RS04355 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS04355 IPR002935 Class I-like SAM-dependent O-methyltransferase CleRt_RS04360 IPR012349 FMN-binding split barrel CleRt_RS04360 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal CleRt_RS04360 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative CleRt_RS04360 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site CleRt_RS04360 IPR000659 Pyridoxamine 5'-phosphate oxidase CleRt_RS04365 IPR003180 Methylpurine-DNA glycosylase CleRt_RS04365 IPR011034 Formyl transferase-like, C-terminal domain superfamily CleRt_RS04365 IPR036995 Methylpurine-DNA glycosylase superfamily CleRt_RS04375 IPR000412 ABC-2 transporter CleRt_RS04375 IPR013525 ABC-2 type transporter CleRt_RS04380 IPR003593 AAA+ ATPase domain CleRt_RS04380 IPR003439 ABC transporter-like CleRt_RS04380 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS04380 IPR017871 ABC transporter, conserved site CleRt_RS04410 IPR015797 NUDIX hydrolase-like domain superfamily CleRt_RS04410 IPR029119 MutY, C-terminal CleRt_RS04410 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CleRt_RS04410 IPR005760 A/G-specific adenine glycosylase MutY CleRt_RS04410 IPR011257 DNA glycosylase CleRt_RS04410 IPR004036 Endonuclease III-like, conserved site-2 CleRt_RS04410 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CleRt_RS04410 IPR000445 Helix-hairpin-helix motif CleRt_RS04410 IPR004035 Endonuclease III, iron-sulphur binding site CleRt_RS04410 IPR003265 HhH-GPD domain CleRt_RS04415 IPR007457 Fe(II) trafficking protein YggX CleRt_RS04415 IPR036766 Fe(II) trafficking protein YggX superfamily CleRt_RS04500 IPR005904 Hypoxanthine phosphoribosyl transferase CleRt_RS04500 IPR000836 Phosphoribosyltransferase domain CleRt_RS04500 IPR029057 Phosphoribosyltransferase-like CleRt_RS04505 IPR006686 Mechanosensitive ion channel MscS, conserved site CleRt_RS04505 IPR011066 Mechanosensitive ion channel MscS, C-terminal CleRt_RS04505 IPR006685 Mechanosensitive ion channel MscS CleRt_RS04505 IPR010920 LSM domain superfamily CleRt_RS04505 IPR023408 Mechanosensitive ion channel MscS domain superfamily CleRt_RS04505 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 CleRt_RS04535 IPR039657 Dimethylallyltransferase CleRt_RS04535 IPR018022 IPP transferase CleRt_RS04535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS04540 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CleRt_RS04540 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS04540 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS04540 IPR037198 MutL, C-terminal domain superfamily CleRt_RS04540 IPR014790 MutL, C-terminal, dimerisation CleRt_RS04540 IPR013507 DNA mismatch repair protein, S5 domain 2-like CleRt_RS04540 IPR014762 DNA mismatch repair, conserved site CleRt_RS04540 IPR020667 DNA mismatch repair protein, MutL CleRt_RS04540 IPR002099 DNA mismatch repair protein family, N-terminal CleRt_RS04540 IPR042121 MutL, C-terminal domain, regulatory subdomain CleRt_RS04540 IPR042120 MutL, C-terminal domain, dimerisation subdomain CleRt_RS04540 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms CleRt_RS04550 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CleRt_RS04550 IPR006311 Twin-arginine translocation pathway, signal sequence CleRt_RS04550 IPR021731 AMIN domain CleRt_RS04555 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE CleRt_RS04555 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS04560 IPR004443 YjeF N-terminal domain CleRt_RS04560 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr CleRt_RS04560 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase CleRt_RS04560 IPR029056 Ribokinase-like CleRt_RS04560 IPR036652 YjeF N-terminal domain superfamily CleRt_RS04565 IPR011129 Cold shock domain CleRt_RS04565 IPR040476 RNase II/RNase R, cold shock domain CleRt_RS04565 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS04565 IPR013223 Ribonuclease B, N-terminal OB domain CleRt_RS04565 IPR003029 S1 domain CleRt_RS04565 IPR022967 RNA-binding domain, S1 CleRt_RS04565 IPR013668 Ribonuclease R winged-helix domain CleRt_RS04565 IPR011805 Ribonuclease R CleRt_RS04565 IPR004476 Ribonuclease II/ribonuclease R CleRt_RS04565 IPR001900 Ribonuclease II/R CleRt_RS04565 IPR022966 Ribonuclease II/R, conserved site CleRt_RS04585 IPR005677 Fumarate hydratase, class II CleRt_RS04585 IPR024083 Fumarase/histidase, N-terminal CleRt_RS04585 IPR018951 Fumarase C, C-terminal CleRt_RS04585 IPR020557 Fumarate lyase, conserved site CleRt_RS04585 IPR000362 Fumarate lyase family CleRt_RS04585 IPR022761 Fumarate lyase, N-terminal CleRt_RS04585 IPR008948 L-Aspartase-like CleRt_RS04590 IPR019758 Peptidase S26A, signal peptidase I, conserved site CleRt_RS04590 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CleRt_RS04590 IPR000223 Peptidase S26A, signal peptidase I CleRt_RS04590 IPR036286 LexA/Signal peptidase-like superfamily CleRt_RS04590 IPR019533 Peptidase S26 CleRt_RS04590 IPR019756 Peptidase S26A, signal peptidase I, serine active site CleRt_RS04625 IPR008141 Alanine dehydrogenase CleRt_RS04625 IPR036291 NAD(P)-binding domain superfamily CleRt_RS04625 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CleRt_RS04625 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CleRt_RS04625 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 CleRt_RS04650 IPR036869 Chaperone J-domain superfamily CleRt_RS04650 IPR002939 Chaperone DnaJ, C-terminal CleRt_RS04650 IPR018253 DnaJ domain, conserved site CleRt_RS04650 IPR001623 DnaJ domain CleRt_RS04650 IPR023859 DNA-binding protein, curved-DNA CleRt_RS04650 IPR008971 HSP40/DnaJ peptide-binding CleRt_RS04655 IPR022835 Chaperone modulatory protein CbpM CleRt_RS04670 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CleRt_RS04670 IPR010240 Cysteine desulfurase IscS CleRt_RS04670 IPR016454 Cysteine desulfurase CleRt_RS04670 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS04670 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS04670 IPR000192 Aminotransferase class V domain CleRt_RS04670 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS04675 IPR004813 Oligopeptide transporter, OPT superfamily CleRt_RS04675 IPR004814 Oligopeptide transporter OPT CleRt_RS04685 IPR022337 Inositol monophosphatase, SuhB CleRt_RS04685 IPR020550 Inositol monophosphatase, conserved site CleRt_RS04685 IPR000760 Inositol monophosphatase-like CleRt_RS04685 IPR020583 Inositol monophosphatase, metal-binding site CleRt_RS04685 IPR033942 Inositol monophosphatase CleRt_RS04705 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CleRt_RS04705 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CleRt_RS04705 IPR005665 Protein-export membrane protein SecF, bacterial CleRt_RS04705 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CleRt_RS04710 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CleRt_RS04710 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CleRt_RS04710 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CleRt_RS04710 IPR005791 Protein translocase subunit SecD CleRt_RS04710 IPR001036 Acriflavin resistance protein CleRt_RS04710 IPR027398 SecD export protein N-terminal TM domain CleRt_RS04715 IPR003849 Preprotein translocase YajC CleRt_RS04720 IPR023382 Adenine nucleotide alpha hydrolase-like domains CleRt_RS04720 IPR004506 tRNA-specific 2-thiouridylase CleRt_RS04720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS04760 IPR008978 HSP20-like chaperone CleRt_RS04760 IPR002068 Alpha crystallin/Hsp20 domain CleRt_RS04855 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal CleRt_RS04855 IPR006405 Nicotinate phosphoribosyltransferase pncB-type CleRt_RS04855 IPR007229 Nicotinate phosphoribosyltransferase family CleRt_RS04855 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain CleRt_RS04855 IPR041619 Nicotinate phosphoribosyltransferase C-terminal domain CleRt_RS04855 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase CleRt_RS04855 IPR013785 Aldolase-type TIM barrel CleRt_RS04895 IPR014210 Cytochrome o ubiquinol oxidase subunit IV CleRt_RS04895 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes CleRt_RS04900 IPR024791 Cytochrome c oxidase subunit III CleRt_RS04900 IPR000298 Cytochrome c oxidase subunit III-like CleRt_RS04900 IPR035973 Cytochrome c oxidase subunit III-like superfamily CleRt_RS04900 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle CleRt_RS04900 IPR014206 Cytochrome o ubiquinol oxidase, subunit III CleRt_RS04900 IPR033946 Ubiquinol oxidase subunit III domain CleRt_RS04905 IPR000883 Cytochrome c oxidase subunit I CleRt_RS04905 IPR014207 Cytochrome o ubiquinol oxidase, subunit I CleRt_RS04905 IPR036927 Cytochrome c oxidase-like, subunit I superfamily CleRt_RS04905 IPR023616 Cytochrome c oxidase-like, subunit I domain CleRt_RS04905 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site CleRt_RS04910 IPR006333 Cytochrome o ubiquinol oxidase subunit II CleRt_RS04910 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily CleRt_RS04910 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain CleRt_RS04910 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain CleRt_RS04910 IPR008972 Cupredoxin CleRt_RS04910 IPR010514 COX aromatic rich motif CleRt_RS04910 IPR002429 Cytochrome c oxidase subunit II-like C-terminal CleRt_RS04960 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 CleRt_RS04960 IPR005719 Dihydroorotate dehydrogenase, class 2 CleRt_RS04960 IPR013785 Aldolase-type TIM barrel CleRt_RS04960 IPR001295 Dihydroorotate dehydrogenase, conserved site CleRt_RS04960 IPR005720 Dihydroorotate dehydrogenase domain CleRt_RS04970 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CleRt_RS04970 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CleRt_RS04970 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CleRt_RS04970 IPR006089 Acyl-CoA dehydrogenase, conserved site CleRt_RS04970 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CleRt_RS04970 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CleRt_RS04970 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CleRt_RS04980 IPR034733 Acetyl-CoA carboxylase CleRt_RS04980 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal CleRt_RS04980 IPR029045 ClpP/crotonase-like domain superfamily CleRt_RS04980 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal CleRt_RS04985 IPR001753 Enoyl-CoA hydratase/isomerase CleRt_RS04985 IPR029045 ClpP/crotonase-like domain superfamily CleRt_RS04985 IPR014748 Enoyl-CoA hydratase, C-terminal CleRt_RS04995 IPR013785 Aldolase-type TIM barrel CleRt_RS04995 IPR006218 DAHP synthetase I/KDSA CleRt_RS04995 IPR006219 DHAP synthase, class 1 CleRt_RS05015 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB CleRt_RS05015 IPR029028 Alpha/beta knot methyltransferases CleRt_RS05015 IPR004441 RNA methyltransferase TrmH family CleRt_RS05015 IPR029064 50S ribosomal protein L30e-like CleRt_RS05015 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CleRt_RS05015 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CleRt_RS05015 IPR001537 tRNA/rRNA methyltransferase, SpoU type CleRt_RS05020 IPR036680 Sporulation-like domain superfamily CleRt_RS05020 IPR012997 Rare lipoprotein A CleRt_RS05020 IPR036908 RlpA-like domain superfamily CleRt_RS05020 IPR034718 Endolytic peptidoglycan transglycosylase RlpA CleRt_RS05020 IPR007730 Sporulation-like domain CleRt_RS05020 IPR009009 RlpA-like protein, double-psi beta-barrel domain CleRt_RS05025 IPR005122 Uracil-DNA glycosylase-like CleRt_RS05025 IPR002043 Uracil-DNA glycosylase family 1 CleRt_RS05025 IPR018085 Uracil-DNA glycosylase, active site CleRt_RS05025 IPR036895 Uracil-DNA glycosylase-like domain superfamily CleRt_RS05035 IPR036821 Peptide deformylase superfamily CleRt_RS05035 IPR023635 Peptide deformylase CleRt_RS05040 IPR006369 Protohaem IX farnesyltransferase CleRt_RS05040 IPR000537 UbiA prenyltransferase family CleRt_RS05040 IPR030470 UbiA prenyltransferase conserved site CleRt_RS05045 IPR033128 Adenylosuccinate synthase, active site CleRt_RS05045 IPR042109 Adenylosuccinate synthetase, domain 1 CleRt_RS05045 IPR042110 Adenylosuccinate synthetase, domain 2 CleRt_RS05045 IPR042111 Adenylosuccinate synthetase, domain 3 CleRt_RS05045 IPR001114 Adenylosuccinate synthetase CleRt_RS05045 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05045 IPR018220 Adenylosuccinate synthase, GTP-binding site CleRt_RS05050 IPR017871 ABC transporter, conserved site CleRt_RS05050 IPR011924 Lipoprotein releasing system, ATP-binding protein CleRt_RS05050 IPR015854 ABC transporter, lipoprotein release, LolD CleRt_RS05050 IPR003439 ABC transporter-like CleRt_RS05050 IPR003593 AAA+ ATPase domain CleRt_RS05050 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05055 IPR025857 MacB-like periplasmic core domain CleRt_RS05055 IPR003838 ABC transporter permease protein domain CleRt_RS05055 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E CleRt_RS05065 IPR004472 Dethiobiotin synthase BioD CleRt_RS05065 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05070 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS05070 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC CleRt_RS05070 IPR041698 Methyltransferase domain 25 CleRt_RS05075 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase CleRt_RS05075 IPR000073 Alpha/beta hydrolase fold-1 CleRt_RS05075 IPR029058 Alpha/Beta hydrolase fold CleRt_RS05080 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS05080 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CleRt_RS05080 IPR004839 Aminotransferase, class I/classII CleRt_RS05080 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type CleRt_RS05080 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria CleRt_RS05080 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS05080 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS05085 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB CleRt_RS05085 IPR006638 Elp3/MiaB/NifB CleRt_RS05085 IPR024177 Biotin synthase CleRt_RS05085 IPR013785 Aldolase-type TIM barrel CleRt_RS05085 IPR010722 Biotin and thiamin synthesis-associated domain CleRt_RS05085 IPR007197 Radical SAM CleRt_RS05090 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA CleRt_RS05090 IPR005814 Aminotransferase class-III CleRt_RS05090 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS05090 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS05090 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS05115 IPR010976 Beta-phosphoglucomutase hydrolase CleRt_RS05115 IPR036412 HAD-like superfamily CleRt_RS05115 IPR041492 Haloacid dehalogenase-like hydrolase CleRt_RS05115 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CleRt_RS05115 IPR023214 HAD superfamily CleRt_RS05150 IPR036107 Carbon storage regulator superfamily CleRt_RS05150 IPR003751 Translational regulator CsrA CleRt_RS05155 IPR041740 Aspartokinase catalytic domain CleRt_RS05155 IPR027795 CASTOR, ACT domain CleRt_RS05155 IPR018042 Aspartate kinase, conserved site CleRt_RS05155 IPR001341 Aspartate kinase CleRt_RS05155 IPR036393 Acetylglutamate kinase-like superfamily CleRt_RS05155 IPR002912 ACT domain CleRt_RS05155 IPR005260 Aspartate kinase, monofunctional class CleRt_RS05155 IPR001048 Aspartate/glutamate/uridylate kinase CleRt_RS05160 IPR002318 Alanine-tRNA ligase, class IIc CleRt_RS05160 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily CleRt_RS05160 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CleRt_RS05160 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain CleRt_RS05160 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal CleRt_RS05160 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria CleRt_RS05160 IPR003156 DHHA1 domain CleRt_RS05160 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CleRt_RS05160 IPR009000 Translation protein, beta-barrel domain superfamily CleRt_RS05165 IPR003783 Regulatory protein RecX CleRt_RS05165 IPR036388 Winged helix-like DNA-binding domain superfamily CleRt_RS05170 IPR023400 DNA recombination and repair protein RecA, C-terminal CleRt_RS05170 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface CleRt_RS05170 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CleRt_RS05170 IPR003593 AAA+ ATPase domain CleRt_RS05170 IPR013765 DNA recombination and repair protein RecA CleRt_RS05170 IPR020584 DNA recombination/repair protein RecA, conserved site CleRt_RS05170 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05175 IPR036653 CinA-like, C-terminal CleRt_RS05175 IPR008136 CinA, C-terminal CleRt_RS05180 IPR007861 DNA mismatch repair protein MutS, clamp CleRt_RS05180 IPR007696 DNA mismatch repair protein MutS, core CleRt_RS05180 IPR000432 DNA mismatch repair protein MutS, C-terminal CleRt_RS05180 IPR017261 DNA mismatch repair protein MutS/MSH CleRt_RS05180 IPR007695 DNA mismatch repair protein MutS-like, N-terminal CleRt_RS05180 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CleRt_RS05180 IPR007860 DNA mismatch repair protein MutS, connector domain CleRt_RS05180 IPR016151 DNA mismatch repair protein MutS, N-terminal CleRt_RS05180 IPR036678 MutS, connector domain superfamily CleRt_RS05180 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05180 IPR005748 DNA mismatch repair protein MutS CleRt_RS05190 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CleRt_RS05190 IPR036259 MFS transporter superfamily CleRt_RS05190 IPR000109 Proton-dependent oligopeptide transporter family CleRt_RS05190 IPR020846 Major facilitator superfamily domain CleRt_RS05190 IPR005279 Dipeptide/tripeptide permease CleRt_RS05200 IPR005279 Dipeptide/tripeptide permease CleRt_RS05200 IPR036259 MFS transporter superfamily CleRt_RS05200 IPR000109 Proton-dependent oligopeptide transporter family CleRt_RS05200 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CleRt_RS05200 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B CleRt_RS05210 IPR006145 Pseudouridine synthase, RsuA/RluA CleRt_RS05210 IPR020103 Pseudouridine synthase, catalytic domain superfamily CleRt_RS05210 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain CleRt_RS05210 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CleRt_RS05210 IPR002942 RNA-binding S4 domain CleRt_RS05210 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CleRt_RS05210 IPR036986 RNA-binding S4 domain superfamily CleRt_RS05215 IPR005234 Chromosome segregation/condensation protein ScpB CleRt_RS05215 IPR036390 Winged helix DNA-binding domain superfamily CleRt_RS05215 IPR036388 Winged helix-like DNA-binding domain superfamily CleRt_RS05220 IPR003768 Segregation and condensation protein A CleRt_RS05225 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CleRt_RS05225 IPR006070 YrdC-like domain CleRt_RS05235 IPR005545 YCII-related CleRt_RS05235 IPR011008 Dimeric alpha-beta barrel CleRt_RS05250 IPR027491 Ribosomal protein L31 type A CleRt_RS05250 IPR042105 Ribosomal protein L31 superfamily CleRt_RS05250 IPR034704 L28p-like CleRt_RS05250 IPR002150 Ribosomal protein L31 CleRt_RS05285 IPR036565 Mur-like, catalytic domain superfamily CleRt_RS05285 IPR004101 Mur ligase, C-terminal CleRt_RS05285 IPR013221 Mur ligase, central CleRt_RS05285 IPR018109 Folylpolyglutamate synthetase, conserved site CleRt_RS05285 IPR036615 Mur ligase, C-terminal domain superfamily CleRt_RS05285 IPR001645 Folylpolyglutamate synthetase CleRt_RS05290 IPR034733 Acetyl-CoA carboxylase CleRt_RS05290 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal CleRt_RS05290 IPR029045 ClpP/crotonase-like domain superfamily CleRt_RS05290 IPR041010 Acetyl-coA carboxylase zinc finger domain CleRt_RS05290 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit CleRt_RS05295 IPR001406 Pseudouridine synthase I, TruA CleRt_RS05295 IPR020095 Pseudouridine synthase I, TruA, C-terminal CleRt_RS05295 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain CleRt_RS05295 IPR020103 Pseudouridine synthase, catalytic domain superfamily CleRt_RS05310 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal CleRt_RS05310 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC CleRt_RS05310 IPR035929 CoaB-like superfamily CleRt_RS05310 IPR036551 Flavin prenyltransferase-like CleRt_RS05310 IPR003382 Flavoprotein CleRt_RS05330 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CleRt_RS05330 IPR000534 Semialdehyde dehydrogenase, NAD-binding CleRt_RS05330 IPR012080 Aspartate-semialdehyde dehydrogenase CleRt_RS05330 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type CleRt_RS05330 IPR036291 NAD(P)-binding domain superfamily CleRt_RS05335 IPR020541 Chorismate synthase, conserved site CleRt_RS05335 IPR000453 Chorismate synthase CleRt_RS05335 IPR035904 Chorismate synthase AroC superfamily CleRt_RS05355 IPR036714 Flavinator of succinate dehydrogenase superfamily CleRt_RS05355 IPR005631 Flavinator of succinate dehydrogenase CleRt_RS05360 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CleRt_RS05360 IPR011079 Alanine racemase, C-terminal CleRt_RS05360 IPR029066 PLP-binding barrel CleRt_RS05360 IPR001608 Alanine racemase, N-terminal CleRt_RS05360 IPR000821 Alanine racemase CleRt_RS05365 IPR007692 DNA helicase, DnaB type CleRt_RS05365 IPR003593 AAA+ ATPase domain CleRt_RS05365 IPR007694 DNA helicase, DnaB-like, C-terminal CleRt_RS05365 IPR007693 DNA helicase, DnaB-like, N-terminal CleRt_RS05365 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CleRt_RS05365 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05365 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily CleRt_RS05370 IPR020594 Ribosomal protein L9, bacteria/chloroplast CleRt_RS05370 IPR020069 Ribosomal protein L9, C-terminal CleRt_RS05370 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CleRt_RS05370 IPR036935 Ribosomal protein L9, N-terminal domain superfamily CleRt_RS05370 IPR020070 Ribosomal protein L9, N-terminal CleRt_RS05370 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CleRt_RS05370 IPR000244 Ribosomal protein L9 CleRt_RS05380 IPR036870 Ribosomal protein S18 superfamily CleRt_RS05380 IPR001648 Ribosomal protein S18 CleRt_RS05385 IPR035980 Ribosomal protein S6 superfamily CleRt_RS05385 IPR020814 Ribosomal protein S6, plastid/chloroplast CleRt_RS05385 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CleRt_RS05385 IPR000529 Ribosomal protein S6 CleRt_RS05400 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS05400 IPR000132 Nitrilase/cyanide hydratase, conserved site CleRt_RS05400 IPR003694 NAD(+) synthetase CleRt_RS05400 IPR022310 NAD/GMP synthase CleRt_RS05400 IPR014445 Glutamine-dependent NAD(+) synthetase CleRt_RS05400 IPR036526 Carbon-nitrogen hydrolase superfamily CleRt_RS05400 IPR003010 Carbon-nitrogen hydrolase CleRt_RS05405 IPR003758 Tetraacyldisaccharide 4'-kinase CleRt_RS05405 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05410 IPR011917 ABC transporter, lipid A export, MsbA CleRt_RS05410 IPR039421 Type I protein exporter CleRt_RS05410 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05410 IPR017871 ABC transporter, conserved site CleRt_RS05410 IPR011527 ABC transporter type 1, transmembrane domain CleRt_RS05410 IPR036640 ABC transporter type 1, transmembrane domain superfamily CleRt_RS05410 IPR003593 AAA+ ATPase domain CleRt_RS05410 IPR003439 ABC transporter-like CleRt_RS05425 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS05425 IPR012162 Polyribonucleotide nucleotidyltransferase CleRt_RS05425 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily CleRt_RS05425 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain CleRt_RS05425 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS05425 IPR015847 Exoribonuclease, phosphorolytic domain 2 CleRt_RS05425 IPR004088 K Homology domain, type 1 CleRt_RS05425 IPR004087 K Homology domain CleRt_RS05425 IPR036345 Exoribonuclease, PH domain 2 superfamily CleRt_RS05425 IPR001247 Exoribonuclease, phosphorolytic domain 1 CleRt_RS05425 IPR022967 RNA-binding domain, S1 CleRt_RS05425 IPR036612 K Homology domain, type 1 superfamily CleRt_RS05425 IPR003029 S1 domain CleRt_RS05425 IPR027408 PNPase/RNase PH domain superfamily CleRt_RS05430 IPR005290 Ribosomal protein S15, bacterial-type CleRt_RS05430 IPR009068 S15/NS1, RNA-binding CleRt_RS05430 IPR000589 Ribosomal protein S15 CleRt_RS05435 IPR029044 Nucleotide-diphospho-sugar transferases CleRt_RS05435 IPR005835 Nucleotidyl transferase domain CleRt_RS05435 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type CleRt_RS05440 IPR035482 Phosphoglucose isomerase, SIS domain 2 CleRt_RS05440 IPR001672 Phosphoglucose isomerase (PGI) CleRt_RS05440 IPR035476 Phosphoglucose isomerase, SIS domain 1 CleRt_RS05440 IPR018189 Phosphoglucose isomerase, conserved site CleRt_RS05440 IPR023096 Phosphoglucose isomerase, C-terminal CleRt_RS05445 IPR005835 Nucleotidyl transferase domain CleRt_RS05445 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form CleRt_RS05445 IPR029044 Nucleotide-diphospho-sugar transferases CleRt_RS05455 IPR036291 NAD(P)-binding domain superfamily CleRt_RS05455 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation CleRt_RS05455 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily CleRt_RS05455 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal CleRt_RS05455 IPR017476 UDP-glucose/GDP-mannose dehydrogenase CleRt_RS05455 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CleRt_RS05455 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type CleRt_RS05455 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal CleRt_RS05460 IPR036291 NAD(P)-binding domain superfamily CleRt_RS05460 IPR017476 UDP-glucose/GDP-mannose dehydrogenase CleRt_RS05460 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal CleRt_RS05460 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily CleRt_RS05460 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation CleRt_RS05460 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CleRt_RS05460 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase CleRt_RS05460 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal CleRt_RS05465 IPR036291 NAD(P)-binding domain superfamily CleRt_RS05465 IPR001509 NAD-dependent epimerase/dehydratase CleRt_RS05475 IPR017932 Glutamine amidotransferase type 2 domain CleRt_RS05475 IPR029055 Nucleophile aminohydrolases, N-terminal CleRt_RS05475 IPR033738 Asparagine synthase, N-terminal domain CleRt_RS05475 IPR001962 Asparagine synthase CleRt_RS05475 IPR006426 Asparagine synthase, glutamine-hydrolyzing CleRt_RS05485 IPR013534 Starch synthase, catalytic domain CleRt_RS05485 IPR001296 Glycosyl transferase, family 1 CleRt_RS05485 IPR011835 Bacterial/plant glycogen synthase CleRt_RS05495 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain CleRt_RS05495 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like CleRt_RS05505 IPR036291 NAD(P)-binding domain superfamily CleRt_RS05505 IPR016040 NAD(P)-binding domain CleRt_RS05510 IPR017932 Glutamine amidotransferase type 2 domain CleRt_RS05510 IPR033738 Asparagine synthase, N-terminal domain CleRt_RS05510 IPR001962 Asparagine synthase CleRt_RS05510 IPR006426 Asparagine synthase, glutamine-hydrolyzing CleRt_RS05510 IPR029055 Nucleophile aminohydrolases, N-terminal CleRt_RS05515 IPR011004 Trimeric LpxA-like superfamily CleRt_RS05515 IPR001451 Hexapeptide repeat CleRt_RS05520 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS05520 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CleRt_RS05520 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS05520 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS05530 IPR004769 Adenylosuccinate lyase CleRt_RS05530 IPR024083 Fumarase/histidase, N-terminal CleRt_RS05530 IPR013539 Adenylosuccinate lyase PurB, C-terminal CleRt_RS05530 IPR022761 Fumarate lyase, N-terminal CleRt_RS05530 IPR008948 L-Aspartase-like CleRt_RS05530 IPR020557 Fumarate lyase, conserved site CleRt_RS05530 IPR000362 Fumarate lyase family CleRt_RS05545 IPR035647 EF-G domain III/V-like CleRt_RS05545 IPR041732 Peptide chain release factor 3, GTP-binding domain CleRt_RS05545 IPR031157 Tr-type G domain, conserved site CleRt_RS05545 IPR004548 Peptide chain release factor 3 CleRt_RS05545 IPR009000 Translation protein, beta-barrel domain superfamily CleRt_RS05545 IPR005225 Small GTP-binding protein domain CleRt_RS05545 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05545 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily CleRt_RS05545 IPR032090 Peptide chain release factor 3, C-terminal CleRt_RS05545 IPR000795 Transcription factor, GTP-binding domain CleRt_RS05555 IPR030922 LPS export ABC transporter permease LptF CleRt_RS05555 IPR005495 Permease LptG/LptF-related CleRt_RS05560 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CleRt_RS05560 IPR002300 Aminoacyl-tRNA synthetase, class Ia CleRt_RS05560 IPR002303 Valine-tRNA ligase CleRt_RS05560 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CleRt_RS05560 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm CleRt_RS05560 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CleRt_RS05560 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CleRt_RS05560 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS05560 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CleRt_RS05560 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CleRt_RS05560 IPR033705 Valyl tRNA synthetase, anticodon-binding domain CleRt_RS05565 IPR012338 Beta-lactamase/transpeptidase-like CleRt_RS05565 IPR001466 Beta-lactamase-related CleRt_RS05565 IPR021860 Peptidase S12, Pab87-related, C-terminal CleRt_RS05570 IPR001036 Acriflavin resistance protein CleRt_RS05570 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CleRt_RS05575 IPR039562 Membrane fusion protein, biotin-lipoyl like domain CleRt_RS05575 IPR022824 Multidrug resistance protein MdtA CleRt_RS05575 IPR006143 RND efflux pump, membrane fusion protein CleRt_RS05610 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CleRt_RS05610 IPR030196 Multidrug resistance protein MdtN CleRt_RS05610 IPR005694 Efflux pump membrane protein CleRt_RS05615 IPR036259 MFS transporter superfamily CleRt_RS05615 IPR020846 Major facilitator superfamily domain CleRt_RS05615 IPR011701 Major facilitator superfamily CleRt_RS05615 IPR004638 Drug resistance transporter EmrB-like CleRt_RS05620 IPR019808 Histidine triad, conserved site CleRt_RS05620 IPR001310 Histidine triad (HIT) protein CleRt_RS05620 IPR011146 HIT-like domain CleRt_RS05620 IPR036265 HIT-like superfamily CleRt_RS05625 IPR018234 GTP cyclohydrolase I, conserved site CleRt_RS05625 IPR020602 GTP cyclohydrolase I domain CleRt_RS05625 IPR001474 GTP cyclohydrolase I CleRt_RS05700 IPR004805 DNA polymerase III, alpha subunit CleRt_RS05700 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CleRt_RS05700 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain CleRt_RS05700 IPR040982 DNA polymerase III alpha subunit finger domain CleRt_RS05700 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CleRt_RS05700 IPR029460 DNA polymerase, helix-hairpin-helix motif CleRt_RS05700 IPR003141 Polymerase/histidinol phosphatase, N-terminal CleRt_RS05700 IPR016195 Polymerase/histidinol phosphatase-like CleRt_RS05700 IPR004013 PHP domain CleRt_RS05705 IPR011761 ATP-grasp fold CleRt_RS05705 IPR011127 D-alanine--D-alanine ligase, N-terminal domain CleRt_RS05705 IPR011095 D-alanine--D-alanine ligase, C-terminal CleRt_RS05705 IPR016185 Pre-ATP-grasp domain superfamily CleRt_RS05705 IPR005905 D-alanine--D-alanine ligase CleRt_RS05705 IPR013815 ATP-grasp fold, subdomain 1 CleRt_RS05705 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site CleRt_RS05725 IPR029062 Class I glutamine amidotransferase-like CleRt_RS05725 IPR017926 Glutamine amidotransferase CleRt_RS05725 IPR001674 GMP synthase, C-terminal CleRt_RS05725 IPR004739 GMP synthase, glutamine amidotransferase CleRt_RS05725 IPR022955 GMP synthase CleRt_RS05725 IPR025777 GMP synthetase ATP pyrophosphatase domain CleRt_RS05725 IPR022310 NAD/GMP synthase CleRt_RS05725 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS05730 IPR005990 Inosine-5'-monophosphate dehydrogenase CleRt_RS05730 IPR015875 IMP dehydrogenase / GMP reductase, conserved site CleRt_RS05730 IPR001093 IMP dehydrogenase/GMP reductase CleRt_RS05730 IPR013785 Aldolase-type TIM barrel CleRt_RS05730 IPR000644 CBS domain CleRt_RS05790 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CleRt_RS05790 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CleRt_RS05790 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CleRt_RS05790 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CleRt_RS05790 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CleRt_RS05790 IPR005841 Alpha-D-phosphohexomutase superfamily CleRt_RS05790 IPR006352 Phosphoglucosamine mutase, bacterial type CleRt_RS05790 IPR005843 Alpha-D-phosphohexomutase, C-terminal CleRt_RS05795 IPR006390 Dihydropteroate synthase CleRt_RS05795 IPR011005 Dihydropteroate synthase-like CleRt_RS05795 IPR000489 Pterin-binding domain CleRt_RS05800 IPR037219 Peptidase M41-like CleRt_RS05800 IPR000642 Peptidase M41 CleRt_RS05800 IPR011546 Peptidase M41, FtsH extracellular CleRt_RS05800 IPR005936 Peptidase, FtsH CleRt_RS05800 IPR003960 ATPase, AAA-type, conserved site CleRt_RS05800 IPR003959 ATPase, AAA-type, core CleRt_RS05800 IPR041569 AAA ATPase, AAA+ lid domain CleRt_RS05800 IPR003593 AAA+ ATPase domain CleRt_RS05800 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05805 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS05805 IPR002877 Ribosomal RNA methyltransferase FtsJ domain CleRt_RS05805 IPR015507 Ribosomal RNA large subunit methyltransferase E CleRt_RS05810 IPR034904 Fe-S cluster assembly domain superfamily CleRt_RS05810 IPR002744 MIP18 family-like CleRt_RS05815 IPR000361 FeS cluster biogenesis CleRt_RS05815 IPR016092 FeS cluster insertion protein CleRt_RS05815 IPR017870 FeS cluster insertion, C-terminal, conserved site CleRt_RS05815 IPR035903 HesB-like domain superfamily CleRt_RS05825 IPR000192 Aminotransferase class V domain CleRt_RS05825 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CleRt_RS05825 IPR016454 Cysteine desulfurase CleRt_RS05825 IPR010970 Cysteine desulfurase, SufS CleRt_RS05825 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS05825 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS05825 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS05830 IPR011542 SUF system FeS cluster assembly, SufD CleRt_RS05830 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CleRt_RS05830 IPR000825 SUF system FeS cluster assembly, SufBD CleRt_RS05835 IPR003439 ABC transporter-like CleRt_RS05835 IPR003593 AAA+ ATPase domain CleRt_RS05835 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05835 IPR010230 FeS cluster assembly SUF system, ATPase SufC CleRt_RS05835 IPR017871 ABC transporter, conserved site CleRt_RS05840 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CleRt_RS05840 IPR010231 SUF system FeS cluster assembly, SufB CleRt_RS05840 IPR000825 SUF system FeS cluster assembly, SufBD CleRt_RS05850 IPR027469 Cation efflux transmembrane domain superfamily CleRt_RS05850 IPR002524 Cation efflux protein CleRt_RS05850 IPR027470 Cation efflux protein, cytoplasmic domain CleRt_RS05850 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CleRt_RS05870 IPR016294 Peptidase M10B CleRt_RS05870 IPR011049 Serralysin-like metalloprotease, C-terminal CleRt_RS05870 IPR034033 Serralysin-like metallopeptidase domain CleRt_RS05870 IPR006026 Peptidase, metallopeptidase CleRt_RS05870 IPR024079 Metallopeptidase, catalytic domain superfamily CleRt_RS05870 IPR013858 Peptidase M10 serralysin, C-terminal CleRt_RS05870 IPR018511 Hemolysin-type calcium-binding conserved site CleRt_RS05870 IPR001343 RTX calcium-binding nonapeptide repeat CleRt_RS05880 IPR000905 Gcp-like domain CleRt_RS05880 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB CleRt_RS05905 IPR005225 Small GTP-binding protein domain CleRt_RS05905 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS05905 IPR015946 K homology domain-like, alpha/beta CleRt_RS05905 IPR032859 GTPase Der, C-terminal KH-domain-like CleRt_RS05905 IPR006073 GTP binding domain CleRt_RS05905 IPR016484 GTP-binding protein EngA CleRt_RS05905 IPR031166 EngA-type guanine nucleotide-binding (G) domain CleRt_RS05910 IPR018704 Tetratricopeptide repeat-like domain CleRt_RS05910 IPR026039 Uncharacterised protein family UPF0070 CleRt_RS05910 IPR011990 Tetratricopeptide-like helical domain superfamily CleRt_RS05915 IPR015807 Histidine-tRNA ligase CleRt_RS05915 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS05915 IPR004154 Anticodon-binding CleRt_RS05915 IPR036621 Anticodon-binding domain superfamily CleRt_RS05915 IPR033656 Histidyl-anticodon-binding CleRt_RS05915 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain CleRt_RS05915 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit CleRt_RS05945 IPR008949 Isoprenoid synthase domain superfamily CleRt_RS05945 IPR000092 Polyprenyl synthetase CleRt_RS05945 IPR033749 Polyprenyl synthetase, conserved site CleRt_RS05950 IPR023005 Nucleoside diphosphate kinase, active site CleRt_RS05950 IPR034907 Nucleoside diphosphate kinase-like domain CleRt_RS05950 IPR036850 Nucleoside diphosphate kinase-like domain superfamily CleRt_RS05950 IPR001564 Nucleoside diphosphate kinase CleRt_RS05960 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CleRt_RS05960 IPR027385 Outer membrane protein beta-barrel domain CleRt_RS05965 IPR012338 Beta-lactamase/transpeptidase-like CleRt_RS05965 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A CleRt_RS05965 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal CleRt_RS05965 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily CleRt_RS05965 IPR015956 Penicillin-binding protein, C-terminal domain superfamily CleRt_RS05965 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal CleRt_RS05980 IPR000544 Octanoyltransferase CleRt_RS05980 IPR020605 Octanoyltransferase, conserved site CleRt_RS05980 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CleRt_RS05985 IPR006638 Elp3/MiaB/NifB CleRt_RS05985 IPR003698 Lipoyl synthase CleRt_RS05985 IPR007197 Radical SAM CleRt_RS05985 IPR013785 Aldolase-type TIM barrel CleRt_RS05990 IPR032816 SNARE associated Golgi protein CleRt_RS05990 IPR032818 DedA family CleRt_RS06000 IPR006683 Thioesterase domain CleRt_RS06000 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase CleRt_RS06000 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain CleRt_RS06000 IPR029069 HotDog domain superfamily CleRt_RS06015 IPR022953 ATP-dependent 6-phosphofructokinase CleRt_RS06015 IPR000023 Phosphofructokinase domain CleRt_RS06015 IPR035966 Phosphofructokinase superfamily CleRt_RS06015 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 CleRt_RS06030 IPR031337 KDPG/KHG aldolase, active site 1 CleRt_RS06030 IPR031338 KDPG/KHG aldolase, active site 2 CleRt_RS06030 IPR000887 KDPG/KHG aldolase CleRt_RS06030 IPR013785 Aldolase-type TIM barrel CleRt_RS06045 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal CleRt_RS06045 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal CleRt_RS06045 IPR018151 Transcription elongation factor, GreA/GreB, conserved site CleRt_RS06045 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily CleRt_RS06045 IPR023459 Transcription elongation factor GreA/GreB family CleRt_RS06045 IPR006359 Transcription elongation factor GreA CleRt_RS06045 IPR028624 Transcription elongation factor GreA/GreB CleRt_RS06045 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily CleRt_RS06055 IPR016185 Pre-ATP-grasp domain superfamily CleRt_RS06055 IPR011761 ATP-grasp fold CleRt_RS06055 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CleRt_RS06055 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain CleRt_RS06055 IPR011607 Methylglyoxal synthase-like domain CleRt_RS06055 IPR006275 Carbamoyl-phosphate synthase, large subunit CleRt_RS06055 IPR036914 Methylglyoxal synthase-like domain superfamily CleRt_RS06055 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily CleRt_RS06055 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain CleRt_RS06055 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain CleRt_RS06060 IPR006274 Carbamoyl-phosphate synthase, small subunit CleRt_RS06060 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily CleRt_RS06060 IPR029062 Class I glutamine amidotransferase-like CleRt_RS06060 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain CleRt_RS06060 IPR017926 Glutamine amidotransferase CleRt_RS06060 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain CleRt_RS06065 IPR001305 Heat shock protein DnaJ, cysteine-rich domain CleRt_RS06065 IPR008971 HSP40/DnaJ peptide-binding CleRt_RS06065 IPR018253 DnaJ domain, conserved site CleRt_RS06065 IPR001623 DnaJ domain CleRt_RS06065 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CleRt_RS06065 IPR002939 Chaperone DnaJ, C-terminal CleRt_RS06065 IPR036869 Chaperone J-domain superfamily CleRt_RS06065 IPR012724 Chaperone DnaJ CleRt_RS06070 IPR013126 Heat shock protein 70 family CleRt_RS06070 IPR012725 Chaperone DnaK CleRt_RS06070 IPR018181 Heat shock protein 70, conserved site CleRt_RS06070 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily CleRt_RS06070 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily CleRt_RS06080 IPR009012 GrpE nucleotide exchange factor, head CleRt_RS06080 IPR000740 GrpE nucleotide exchange factor CleRt_RS06080 IPR013805 GrpE nucleotide exchange factor, coiled-coil CleRt_RS06085 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CleRt_RS06085 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CleRt_RS06085 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal CleRt_RS06085 IPR002504 NAD kinase CleRt_RS06095 IPR036388 Winged helix-like DNA-binding domain superfamily CleRt_RS06095 IPR002481 Ferric-uptake regulator CleRt_RS06095 IPR036390 Winged helix DNA-binding domain superfamily CleRt_RS06105 IPR037021 RnfH superfamily CleRt_RS06105 IPR005346 RnfH protein CleRt_RS06105 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CleRt_RS06110 IPR023393 START-like domain superfamily CleRt_RS06110 IPR005031 Coenzyme Q-binding protein COQ10, START domain CleRt_RS06115 IPR023620 Small protein B CleRt_RS06115 IPR000037 SsrA-binding protein CleRt_RS06115 IPR020081 SsrA-binding protein, conserved site CleRt_RS06175 IPR036249 Thioredoxin-like superfamily CleRt_RS06175 IPR024706 Peroxiredoxin, AhpC-type CleRt_RS06175 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CleRt_RS06175 IPR013766 Thioredoxin domain CleRt_RS06200 IPR013216 Methyltransferase type 11 CleRt_RS06200 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC CleRt_RS06200 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS06205 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CleRt_RS06205 IPR006258 Dihydrolipoamide dehydrogenase CleRt_RS06205 IPR036188 FAD/NAD(P)-binding domain superfamily CleRt_RS06205 IPR023753 FAD/NAD(P)-binding domain CleRt_RS06205 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CleRt_RS06205 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CleRt_RS06205 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CleRt_RS06210 IPR000089 Biotin/lipoyl attachment CleRt_RS06210 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CleRt_RS06210 IPR004167 Peripheral subunit-binding domain CleRt_RS06210 IPR036625 E3-binding domain superfamily CleRt_RS06210 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CleRt_RS06210 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CleRt_RS06210 IPR011053 Single hybrid motif CleRt_RS06210 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex CleRt_RS06215 IPR004660 Pyruvate dehydrogenase E1 component CleRt_RS06215 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal CleRt_RS06215 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CleRt_RS06215 IPR041621 Pyruvate dehydrogenase E1 component, middle domain CleRt_RS06215 IPR005474 Transketolase, N-terminal CleRt_RS06215 IPR029061 Thiamin diphosphate-binding fold CleRt_RS06225 IPR006153 Cation/H+ exchanger CleRt_RS06225 IPR004771 K+/H+ exchanger CleRt_RS06225 IPR020884 Glutathione-regulated potassium-efflux system protein KefB CleRt_RS06225 IPR038770 Sodium/solute symporter superfamily CleRt_RS06225 IPR003148 Regulator of K+ conductance, N-terminal CleRt_RS06225 IPR036291 NAD(P)-binding domain superfamily CleRt_RS06235 IPR000850 Adenylate kinase/UMP-CMP kinase CleRt_RS06235 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS06235 IPR007862 Adenylate kinase, active site lid domain CleRt_RS06235 IPR006259 Adenylate kinase subfamily CleRt_RS06235 IPR033690 Adenylate kinase, conserved site CleRt_RS06255 IPR000307 Ribosomal protein S16 CleRt_RS06255 IPR023803 Ribosomal protein S16 domain superfamily CleRt_RS06260 IPR002676 RimM, N-terminal CleRt_RS06260 IPR027275 PRC-barrel domain CleRt_RS06260 IPR036976 RimM, N-terminal domain superfamily CleRt_RS06260 IPR011033 PRC-barrel-like superfamily CleRt_RS06260 IPR009000 Translation protein, beta-barrel domain superfamily CleRt_RS06260 IPR011961 16S rRNA processing protein RimM CleRt_RS06265 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CleRt_RS06265 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain CleRt_RS06265 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria CleRt_RS06265 IPR029028 Alpha/beta knot methyltransferases CleRt_RS06265 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal CleRt_RS06270 IPR038657 Ribosomal protein L19 superfamily CleRt_RS06270 IPR008991 Translation protein SH3-like domain superfamily CleRt_RS06270 IPR001857 Ribosomal protein L19 CleRt_RS06270 IPR018257 Ribosomal protein L19, conserved site CleRt_RS06275 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily CleRt_RS06275 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain CleRt_RS06275 IPR023546 Methylated-DNA--protein-cysteine methyltransferase CleRt_RS06275 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site CleRt_RS06275 IPR036388 Winged helix-like DNA-binding domain superfamily CleRt_RS06275 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding CleRt_RS06275 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain CleRt_RS06280 IPR020846 Major facilitator superfamily domain CleRt_RS06280 IPR011701 Major facilitator superfamily CleRt_RS06280 IPR000849 Sugar phosphate transporter CleRt_RS06280 IPR036259 MFS transporter superfamily CleRt_RS06285 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal CleRt_RS06285 IPR006222 Aminomethyltransferase, folate-binding domain CleRt_RS06285 IPR028896 Aminomethyltransferase-like CleRt_RS06285 IPR017703 YgfZ/GcvT conserved site CleRt_RS06290 IPR002313 Lysine-tRNA ligase, class II CleRt_RS06290 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CleRt_RS06290 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS06290 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal CleRt_RS06290 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CleRt_RS06290 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS06295 IPR004374 Peptide chain release factor 2 CleRt_RS06295 IPR000352 Peptide chain release factor class I CleRt_RS06295 IPR005139 Peptide chain release factor CleRt_RS06315 IPR003700 Ketopantoate hydroxymethyltransferase CleRt_RS06315 IPR040442 Pyruvate kinase-like domain superfamily CleRt_RS06315 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CleRt_RS06320 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain CleRt_RS06320 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS06320 IPR003721 Pantoate-beta-alanine ligase CleRt_RS06330 IPR004619 Type III pantothenate kinase CleRt_RS06355 IPR001872 Peptidase A8, signal peptidase II CleRt_RS06360 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain CleRt_RS06360 IPR002300 Aminoacyl-tRNA synthetase, class Ia CleRt_RS06360 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS06360 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CleRt_RS06360 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CleRt_RS06360 IPR010663 Zinc finger, FPG/IleRS-type CleRt_RS06360 IPR002301 Isoleucine-tRNA ligase CleRt_RS06360 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CleRt_RS06360 IPR023585 Isoleucine-tRNA ligase, type 1 CleRt_RS06370 IPR004821 Cytidyltransferase-like domain CleRt_RS06370 IPR002606 Riboflavin kinase, bacterial CleRt_RS06370 IPR015864 FAD synthetase CleRt_RS06370 IPR023468 Riboflavin kinase CleRt_RS06370 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic CleRt_RS06370 IPR023465 Riboflavin kinase domain superfamily CleRt_RS06370 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS06375 IPR004268 Peptidoglycan biosynthesis protein MurJ CleRt_RS06380 IPR036510 Ribosomal protein S20 superfamily CleRt_RS06380 IPR002583 Ribosomal protein S20 CleRt_RS06385 IPR006073 GTP binding domain CleRt_RS06385 IPR014100 GTP-binding protein Obg/CgtA CleRt_RS06385 IPR036726 GTP1/OBG domain superfamily CleRt_RS06385 IPR031167 OBG-type guanine nucleotide-binding (G) domain CleRt_RS06385 IPR035101 GTP-binding protein, Obg-type CleRt_RS06385 IPR006074 GTP1/OBG, conserved site CleRt_RS06385 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS06385 IPR006169 GTP1/OBG domain CleRt_RS06390 IPR018261 Ribosomal protein L27, conserved site CleRt_RS06390 IPR001684 Ribosomal protein L27 CleRt_RS06395 IPR036164 L21-like superfamily CleRt_RS06395 IPR028909 Ribosomal protein L21-like CleRt_RS06395 IPR001787 Ribosomal protein L21 CleRt_RS06395 IPR018258 Ribosomal protein L21, conserved site CleRt_RS06400 IPR000092 Polyprenyl synthetase CleRt_RS06400 IPR033749 Polyprenyl synthetase, conserved site CleRt_RS06400 IPR008949 Isoprenoid synthase domain superfamily CleRt_RS06410 IPR001867 OmpR/PhoB-type DNA-binding domain CleRt_RS06410 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB CleRt_RS06410 IPR011006 CheY-like superfamily CleRt_RS06410 IPR036388 Winged helix-like DNA-binding domain superfamily CleRt_RS06410 IPR039420 Transcriptional regulatory protein WalR-like CleRt_RS06410 IPR001789 Signal transduction response regulator, receiver domain CleRt_RS06415 IPR003594 Histidine kinase/HSP90-like ATPase CleRt_RS06415 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CleRt_RS06415 IPR021766 Phosphate regulon sensor protein PhoR CleRt_RS06415 IPR013767 PAS fold CleRt_RS06415 IPR035965 PAS domain superfamily CleRt_RS06415 IPR000014 PAS domain CleRt_RS06415 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CleRt_RS06415 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CleRt_RS06415 IPR005467 Histidine kinase domain CleRt_RS06415 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CleRt_RS06415 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR CleRt_RS06420 IPR005828 Major facilitator, sugar transporter-like CleRt_RS06420 IPR036259 MFS transporter superfamily CleRt_RS06420 IPR020846 Major facilitator superfamily domain CleRt_RS06420 IPR005829 Sugar transporter, conserved site CleRt_RS06435 IPR027469 Cation efflux transmembrane domain superfamily CleRt_RS06435 IPR002524 Cation efflux protein CleRt_RS06435 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CleRt_RS06435 IPR027470 Cation efflux protein, cytoplasmic domain CleRt_RS06445 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS06445 IPR013216 Methyltransferase type 11 CleRt_RS06445 IPR010233 Ubiquinone biosynthesis O-methyltransferase CleRt_RS06450 IPR037512 Phosphoglycolate phosphatase, prokaryotic CleRt_RS06450 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic CleRt_RS06450 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CleRt_RS06450 IPR023214 HAD superfamily CleRt_RS06450 IPR041492 Haloacid dehalogenase-like hydrolase CleRt_RS06450 IPR006439 HAD hydrolase, subfamily IA CleRt_RS06450 IPR036412 HAD-like superfamily CleRt_RS06465 IPR014782 Peptidase M1, membrane alanine aminopeptidase CleRt_RS06465 IPR012779 Peptidase M1, alanyl aminopeptidase CleRt_RS06465 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold CleRt_RS06465 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily CleRt_RS06465 IPR027268 Peptidase M4/M1, CTD superfamily CleRt_RS06465 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase CleRt_RS06465 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal CleRt_RS06465 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily CleRt_RS06465 IPR042097 Aminopeptidase N-like , N-terminal CleRt_RS06470 IPR005412 DNA-binding protein Fis CleRt_RS06470 IPR002197 DNA binding HTH domain, Fis-type CleRt_RS06470 IPR009057 Homeobox-like domain superfamily CleRt_RS06525 IPR036736 ACP-like superfamily CleRt_RS06525 IPR009081 Phosphopantetheine binding ACP domain CleRt_RS06525 IPR006162 Phosphopantetheine attachment site CleRt_RS06525 IPR003231 Acyl carrier protein (ACP) CleRt_RS06560 IPR013520 Exonuclease, RNase T/DNA polymerase III CleRt_RS06560 IPR012337 Ribonuclease H-like superfamily CleRt_RS06560 IPR036397 Ribonuclease H superfamily CleRt_RS06560 IPR006309 DNA polymerase 3, epsilon subunit CleRt_RS06560 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CleRt_RS06565 IPR022892 Ribonuclease HI CleRt_RS06565 IPR036397 Ribonuclease H superfamily CleRt_RS06565 IPR002156 Ribonuclease H domain CleRt_RS06565 IPR012337 Ribonuclease H-like superfamily CleRt_RS06570 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS06570 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC CleRt_RS06570 IPR013216 Methyltransferase type 11 CleRt_RS06570 IPR029058 Alpha/Beta hydrolase fold CleRt_RS06570 IPR000073 Alpha/beta hydrolase fold-1 CleRt_RS06580 IPR018392 LysM domain CleRt_RS06580 IPR036779 LysM domain superfamily CleRt_RS06580 IPR023346 Lysozyme-like domain superfamily CleRt_RS06580 IPR000189 Prokaryotic transglycosylase, active site CleRt_RS06580 IPR008258 Transglycosylase SLT domain 1 CleRt_RS06585 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site CleRt_RS06585 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CleRt_RS06585 IPR036291 NAD(P)-binding domain superfamily CleRt_RS06585 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CleRt_RS06585 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase CleRt_RS06595 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS06595 IPR003594 Histidine kinase/HSP90-like ATPase CleRt_RS06595 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CleRt_RS06595 IPR019805 Heat shock protein Hsp90, conserved site CleRt_RS06595 IPR020575 Heat shock protein Hsp90, N-terminal CleRt_RS06595 IPR037196 HSP90, C-terminal domain CleRt_RS06595 IPR001404 Heat shock protein Hsp90 family CleRt_RS06605 IPR014001 Helicase superfamily 1/2, ATP-binding domain CleRt_RS06605 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS06605 IPR033454 RecG, wedge domain CleRt_RS06605 IPR001650 Helicase, C-terminal CleRt_RS06605 IPR011545 DEAD/DEAH box helicase domain CleRt_RS06605 IPR004609 ATP-dependent DNA helicase RecG CleRt_RS06605 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS06610 IPR006175 YjgF/YER057c/UK114 family CleRt_RS06610 IPR019897 RidA, conserved site CleRt_RS06610 IPR035959 RutC-like superfamily CleRt_RS06610 IPR006056 RidA family CleRt_RS06615 IPR002912 ACT domain CleRt_RS06615 IPR012675 Beta-grasp domain superfamily CleRt_RS06615 IPR003607 HD/PDEase domain CleRt_RS06615 IPR004811 RelA/SpoT family CleRt_RS06615 IPR004095 TGS CleRt_RS06615 IPR033655 RelA, TGS domain CleRt_RS06615 IPR012676 TGS-like CleRt_RS06615 IPR007685 RelA/SpoT CleRt_RS06620 IPR036161 RPB6/omega subunit-like superfamily CleRt_RS06620 IPR006110 RNA polymerase, subunit omega/K/RPB6 CleRt_RS06620 IPR003716 DNA-directed RNA polymerase, omega subunit CleRt_RS06620 IPR012293 RNA polymerase subunit, RPB6/omega CleRt_RS06625 IPR008144 Guanylate kinase-like domain CleRt_RS06625 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS06625 IPR020590 Guanylate kinase, conserved site CleRt_RS06625 IPR017665 Guanylate kinase CleRt_RS06625 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CleRt_RS06635 IPR001247 Exoribonuclease, phosphorolytic domain 1 CleRt_RS06635 IPR018336 Ribonuclease PH, conserved site CleRt_RS06635 IPR002381 Ribonuclease PH, bacterial-type CleRt_RS06635 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS06635 IPR027408 PNPase/RNase PH domain superfamily CleRt_RS06635 IPR036345 Exoribonuclease, PH domain 2 superfamily CleRt_RS06635 IPR015847 Exoribonuclease, phosphorolytic domain 2 CleRt_RS06640 IPR015942 Asp/Glu/hydantoin racemase CleRt_RS06640 IPR001920 Asp/Glu racemase CleRt_RS06640 IPR033134 Asp/Glu racemase, active site 2 CleRt_RS06640 IPR004391 Glutamate racemase CleRt_RS06640 IPR018187 Asp/Glu racemase, active site 1 CleRt_RS06645 IPR004808 AP endonuclease 1 CleRt_RS06645 IPR020848 AP endonuclease 1, conserved site CleRt_RS06645 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CleRt_RS06645 IPR005135 Endonuclease/exonuclease/phosphatase CleRt_RS06645 IPR020847 AP endonuclease 1, binding site CleRt_RS06650 IPR023031 Orotate phosphoribosyltransferase CleRt_RS06650 IPR004467 Orotate phosphoribosyl transferase domain CleRt_RS06650 IPR000836 Phosphoribosyltransferase domain CleRt_RS06650 IPR029057 Phosphoribosyltransferase-like CleRt_RS06655 IPR005841 Alpha-D-phosphohexomutase superfamily CleRt_RS06655 IPR016066 Alpha-D-phosphohexomutase, conserved site CleRt_RS06655 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CleRt_RS06655 IPR005843 Alpha-D-phosphohexomutase, C-terminal CleRt_RS06655 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CleRt_RS06655 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CleRt_RS06655 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CleRt_RS06655 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CleRt_RS06660 IPR033704 dUTPase, trimeric CleRt_RS06660 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase CleRt_RS06660 IPR036157 dUTPase-like superfamily CleRt_RS06660 IPR029054 dUTPase-like CleRt_RS06670 IPR026569 Ribosomal protein L28/L24 CleRt_RS06670 IPR001383 Ribosomal protein L28 CleRt_RS06670 IPR037147 Ribosomal protein L28/L24 superfamily CleRt_RS06670 IPR034704 L28p-like CleRt_RS06675 IPR038584 Ribosomal protein L33 superfamily CleRt_RS06675 IPR001705 Ribosomal protein L33 CleRt_RS06675 IPR011332 Zinc-binding ribosomal protein CleRt_RS06675 IPR018264 Ribosomal protein L33, conserved site CleRt_RS06680 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CleRt_RS06680 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CleRt_RS06685 IPR004821 Cytidyltransferase-like domain CleRt_RS06685 IPR001980 Phosphopantetheine adenylyltransferase CleRt_RS06685 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS06690 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily CleRt_RS06690 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK CleRt_RS06695 IPR025866 Polymerase A arginine-rich C-terminal domain CleRt_RS06695 IPR002646 Poly A polymerase, head domain CleRt_RS06695 IPR010206 Poly(A) polymerase I CleRt_RS06695 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain CleRt_RS06725 IPR002771 Multiple antibiotic resistance (MarC)-related CleRt_RS06730 IPR041364 Rubredoxin binding domain CleRt_RS06730 IPR023753 FAD/NAD(P)-binding domain CleRt_RS06730 IPR036188 FAD/NAD(P)-binding domain superfamily CleRt_RS06740 IPR041552 UvrA DNA-binding domain CleRt_RS06740 IPR004602 UvrABC system subunit A CleRt_RS06740 IPR003439 ABC transporter-like CleRt_RS06740 IPR017871 ABC transporter, conserved site CleRt_RS06740 IPR041102 UvrA, interaction domain CleRt_RS06740 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS06750 IPR020846 Major facilitator superfamily domain CleRt_RS06750 IPR011701 Major facilitator superfamily CleRt_RS06750 IPR036259 MFS transporter superfamily CleRt_RS06755 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS06755 IPR000424 Primosome PriB/single-strand DNA-binding CleRt_RS06755 IPR011344 Single-stranded DNA-binding protein CleRt_RS06760 IPR010758 Trans-2-enoyl-CoA reductase CleRt_RS06760 IPR024906 Enoyl reductase FAD binding domain CleRt_RS06760 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative CleRt_RS06780 IPR000456 Ribosomal protein L17 CleRt_RS06780 IPR036373 Ribosomal protein L17 superfamily CleRt_RS06785 IPR036643 DNA-directed RNA polymerase, insert domain superfamily CleRt_RS06785 IPR011773 DNA-directed RNA polymerase, alpha subunit CleRt_RS06785 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type CleRt_RS06785 IPR011260 RNA polymerase, alpha subunit, C-terminal CleRt_RS06785 IPR011262 DNA-directed RNA polymerase, insert domain CleRt_RS06785 IPR036603 RNA polymerase, RBP11-like subunit CleRt_RS06790 IPR022801 Ribosomal protein S4/S9 CleRt_RS06790 IPR001912 Ribosomal protein S4/S9, N-terminal CleRt_RS06790 IPR005709 Ribosomal protein S4, bacterial-type CleRt_RS06790 IPR018079 Ribosomal protein S4, conserved site CleRt_RS06790 IPR002942 RNA-binding S4 domain CleRt_RS06790 IPR036986 RNA-binding S4 domain superfamily CleRt_RS06795 IPR019981 Ribosomal protein S11, bacterial-type CleRt_RS06795 IPR036967 Ribosomal protein S11 superfamily CleRt_RS06795 IPR018102 Ribosomal S11, conserved site CleRt_RS06795 IPR001971 Ribosomal protein S11 CleRt_RS06800 IPR027437 30s ribosomal protein S13, C-terminal CleRt_RS06800 IPR001892 Ribosomal protein S13 CleRt_RS06800 IPR010979 Ribosomal protein S13-like, H2TH CleRt_RS06800 IPR018269 Ribosomal protein S13, conserved site CleRt_RS06800 IPR019980 Ribosomal protein S13, bacterial-type CleRt_RS06805 IPR023201 SecY domain superfamily CleRt_RS06805 IPR026593 Protein translocase subunit SecY CleRt_RS06805 IPR030659 SecY conserved site CleRt_RS06805 IPR002208 SecY/SEC61-alpha family CleRt_RS06810 IPR030878 Ribosomal protein L15 CleRt_RS06810 IPR021131 Ribosomal protein L18e/L15P CleRt_RS06810 IPR036227 Ribosomal L18e/L15P superfamily CleRt_RS06810 IPR005749 Ribosomal protein L15, bacterial-type CleRt_RS06815 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CleRt_RS06815 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CleRt_RS06815 IPR005996 Ribosomal protein L30, bacterial-type CleRt_RS06820 IPR018192 Ribosomal protein S5, N-terminal, conserved site CleRt_RS06820 IPR013810 Ribosomal protein S5, N-terminal CleRt_RS06820 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS06820 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS06820 IPR005324 Ribosomal protein S5, C-terminal CleRt_RS06820 IPR005712 Ribosomal protein S5, bacterial-type CleRt_RS06820 IPR000851 Ribosomal protein S5 CleRt_RS06825 IPR004389 Ribosomal protein L18, bacterial-type CleRt_RS06825 IPR005484 Ribosomal protein L18 CleRt_RS06830 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily CleRt_RS06830 IPR000702 Ribosomal protein L6 CleRt_RS06830 IPR020040 Ribosomal protein L6, alpha-beta domain CleRt_RS06830 IPR019906 Ribosomal protein L6, bacterial-type CleRt_RS06830 IPR002358 Ribosomal protein L6, conserved site CleRt_RS06835 IPR000630 Ribosomal protein S8 CleRt_RS06835 IPR035987 Ribosomal protein S8 superfamily CleRt_RS06840 IPR023036 Ribosomal protein S14, bacterial/plastid CleRt_RS06840 IPR018271 Ribosomal protein S14, conserved site CleRt_RS06840 IPR001209 Ribosomal protein S14 CleRt_RS06845 IPR020930 Ribosomal protein L5, bacterial-type CleRt_RS06845 IPR002132 Ribosomal protein L5 CleRt_RS06845 IPR031309 Ribosomal protein L5, C-terminal CleRt_RS06845 IPR020929 Ribosomal protein L5, conserved site CleRt_RS06845 IPR022803 Ribosomal protein L5 domain superfamily CleRt_RS06845 IPR031310 Ribosomal protein L5, N-terminal CleRt_RS06850 IPR008991 Translation protein SH3-like domain superfamily CleRt_RS06850 IPR005825 Ribosomal protein L24/L26, conserved site CleRt_RS06850 IPR003256 Ribosomal protein L24 CleRt_RS06850 IPR005824 KOW CleRt_RS06850 IPR014722 Ribosomal protein L2, domain 2 CleRt_RS06850 IPR041988 Ribosomal Protein L26/L24, KOW domain CleRt_RS06855 IPR036853 Ribosomal protein L14 superfamily CleRt_RS06855 IPR005745 Ribosomal protein L14P, bacterial-type CleRt_RS06855 IPR019972 Ribosomal protein L14P, conserved site CleRt_RS06855 IPR000218 Ribosomal protein L14P CleRt_RS06860 IPR019984 30S ribosomal protein S17 CleRt_RS06860 IPR000266 Ribosomal protein S17/S11 CleRt_RS06860 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS06860 IPR019979 Ribosomal protein S17, conserved site CleRt_RS06865 IPR001854 Ribosomal protein L29/L35 CleRt_RS06865 IPR036049 Ribosomal protein L29/L35 superfamily CleRt_RS06870 IPR016180 Ribosomal protein L10e/L16 CleRt_RS06870 IPR036920 Ribosomal protein L10e/L16 superfamily CleRt_RS06870 IPR000114 Ribosomal protein L16 CleRt_RS06875 IPR015946 K homology domain-like, alpha/beta CleRt_RS06875 IPR036419 Ribosomal protein S3, C-terminal domain superfamily CleRt_RS06875 IPR004044 K Homology domain, type 2 CleRt_RS06875 IPR009019 K homology domain superfamily, prokaryotic type CleRt_RS06875 IPR005704 Ribosomal protein S3, bacterial-type CleRt_RS06875 IPR001351 Ribosomal protein S3, C-terminal CleRt_RS06875 IPR004087 K Homology domain CleRt_RS06875 IPR018280 Ribosomal protein S3, conserved site CleRt_RS06880 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type CleRt_RS06880 IPR036394 Ribosomal protein L22/L17 superfamily CleRt_RS06880 IPR018260 Ribosomal protein L22/L17, conserved site CleRt_RS06880 IPR001063 Ribosomal protein L22/L17 CleRt_RS06885 IPR002222 Ribosomal protein S19/S15 CleRt_RS06885 IPR023575 Ribosomal protein S19, superfamily CleRt_RS06885 IPR020934 Ribosomal protein S19 conserved site CleRt_RS06885 IPR005732 Ribosomal protein S19, bacterial-type CleRt_RS06890 IPR008991 Translation protein SH3-like domain superfamily CleRt_RS06890 IPR014726 Ribosomal protein L2, domain 3 CleRt_RS06890 IPR022671 Ribosomal protein L2, conserved site CleRt_RS06890 IPR022669 Ribosomal protein L2, C-terminal CleRt_RS06890 IPR005880 Ribosomal protein L2, bacterial/organellar-type CleRt_RS06890 IPR014722 Ribosomal protein L2, domain 2 CleRt_RS06890 IPR022666 Ribosomal Proteins L2, RNA binding domain CleRt_RS06890 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS06890 IPR002171 Ribosomal protein L2 CleRt_RS06895 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CleRt_RS06895 IPR012678 Ribosomal protein L23/L15e core domain superfamily CleRt_RS06895 IPR013025 Ribosomal protein L25/L23 CleRt_RS06900 IPR013005 50S ribosomal protein uL4 CleRt_RS06900 IPR002136 Ribosomal protein L4/L1e CleRt_RS06900 IPR023574 Ribosomal protein L4 domain superfamily CleRt_RS06905 IPR019927 Ribosomal protein L3, bacterial/organelle-type CleRt_RS06905 IPR000597 Ribosomal protein L3 CleRt_RS06905 IPR009000 Translation protein, beta-barrel domain superfamily CleRt_RS06905 IPR019926 Ribosomal protein L3, conserved site CleRt_RS06910 IPR036838 Ribosomal protein S10 domain superfamily CleRt_RS06910 IPR001848 Ribosomal protein S10 CleRt_RS06910 IPR027486 Ribosomal protein S10 domain CleRt_RS06910 IPR018268 Ribosomal protein S10, conserved site CleRt_RS06915 IPR009000 Translation protein, beta-barrel domain superfamily CleRt_RS06915 IPR005225 Small GTP-binding protein domain CleRt_RS06915 IPR004161 Translation elongation factor EFTu-like, domain 2 CleRt_RS06915 IPR031157 Tr-type G domain, conserved site CleRt_RS06915 IPR033720 Elongation factor Tu, domain 2 CleRt_RS06915 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain CleRt_RS06915 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CleRt_RS06915 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CleRt_RS06915 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle CleRt_RS06915 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS06915 IPR000795 Transcription factor, GTP-binding domain CleRt_RS06920 IPR004540 Translation elongation factor EFG/EF2 CleRt_RS06920 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS06920 IPR005225 Small GTP-binding protein domain CleRt_RS06920 IPR005517 Translation elongation factor EFG/EF2, domain IV CleRt_RS06920 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS06920 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS06920 IPR031157 Tr-type G domain, conserved site CleRt_RS06920 IPR004161 Translation elongation factor EFTu-like, domain 2 CleRt_RS06920 IPR000795 Transcription factor, GTP-binding domain CleRt_RS06920 IPR000640 Elongation factor EFG, domain V-like CleRt_RS06920 IPR035647 EF-G domain III/V-like CleRt_RS06920 IPR009022 Elongation factor G, domain III CleRt_RS06920 IPR041095 Elongation Factor G, domain II CleRt_RS06920 IPR035649 EFG, domain V CleRt_RS06920 IPR009000 Translation protein, beta-barrel domain superfamily CleRt_RS06925 IPR000235 Ribosomal protein S5/S7 CleRt_RS06925 IPR020606 Ribosomal protein S7, conserved site CleRt_RS06925 IPR023798 Ribosomal protein S7 domain CleRt_RS06925 IPR005717 Ribosomal protein S7, bacterial/organellar-type CleRt_RS06925 IPR036823 Ribosomal protein S7 domain superfamily CleRt_RS06930 IPR005679 Ribosomal protein S12, bacterial-type CleRt_RS06930 IPR006032 Ribosomal protein S12/S23 CleRt_RS06930 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS06935 IPR007081 RNA polymerase Rpb1, domain 5 CleRt_RS06935 IPR007083 RNA polymerase Rpb1, domain 4 CleRt_RS06935 IPR006592 RNA polymerase, N-terminal CleRt_RS06935 IPR038120 RNA polymerase Rpb1, funnel domain superfamily CleRt_RS06935 IPR000722 RNA polymerase, alpha subunit CleRt_RS06935 IPR007080 RNA polymerase Rpb1, domain 1 CleRt_RS06935 IPR042102 RNA polymerase Rpb1, domain 3 superfamily CleRt_RS06935 IPR012754 DNA-directed RNA polymerase, subunit beta-prime CleRt_RS06935 IPR007066 RNA polymerase Rpb1, domain 3 CleRt_RS06940 IPR007644 RNA polymerase, beta subunit, protrusion CleRt_RS06940 IPR007642 RNA polymerase Rpb2, domain 2 CleRt_RS06940 IPR037034 RNA polymerase Rpb2, domain 2 superfamily CleRt_RS06940 IPR014724 RNA polymerase Rpb2, OB-fold CleRt_RS06940 IPR007121 RNA polymerase, beta subunit, conserved site CleRt_RS06940 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type CleRt_RS06940 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily CleRt_RS06940 IPR007641 RNA polymerase Rpb2, domain 7 CleRt_RS06940 IPR007645 RNA polymerase Rpb2, domain 3 CleRt_RS06940 IPR015712 DNA-directed RNA polymerase, subunit 2 CleRt_RS06940 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain CleRt_RS06940 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily CleRt_RS06940 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain CleRt_RS06945 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily CleRt_RS06945 IPR000206 Ribosomal protein L7/L12 CleRt_RS06945 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CleRt_RS06945 IPR013823 Ribosomal protein L7/L12, C-terminal CleRt_RS06945 IPR008932 Ribosomal protein L7/L12, oligomerisation CleRt_RS06950 IPR022973 Ribosomal protein L10 CleRt_RS06950 IPR002363 Ribosomal protein L10, eubacterial, conserved site CleRt_RS06950 IPR001790 Ribosomal protein L10P CleRt_RS06955 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CleRt_RS06955 IPR023673 Ribosomal protein L1, conserved site CleRt_RS06955 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CleRt_RS06955 IPR023674 Ribosomal protein L1-like CleRt_RS06955 IPR002143 Ribosomal protein L1 CleRt_RS06955 IPR005878 Ribosomal protein L1, bacterial-type CleRt_RS06960 IPR020784 Ribosomal protein L11, N-terminal CleRt_RS06960 IPR020785 Ribosomal protein L11, conserved site CleRt_RS06960 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CleRt_RS06960 IPR020783 Ribosomal protein L11, C-terminal CleRt_RS06960 IPR006519 Ribosomal protein L11, bacterial-type CleRt_RS06960 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CleRt_RS06960 IPR000911 Ribosomal protein L11/L12 CleRt_RS06980 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CleRt_RS06980 IPR009000 Translation protein, beta-barrel domain superfamily CleRt_RS06980 IPR000795 Transcription factor, GTP-binding domain CleRt_RS06980 IPR031157 Tr-type G domain, conserved site CleRt_RS06980 IPR033720 Elongation factor Tu, domain 2 CleRt_RS06980 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle CleRt_RS06980 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS06980 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CleRt_RS06980 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain CleRt_RS06980 IPR004161 Translation elongation factor EFTu-like, domain 2 CleRt_RS06980 IPR005225 Small GTP-binding protein domain CleRt_RS07000 IPR004568 Phosphopantetheine-protein transferase domain CleRt_RS07000 IPR037143 4'-phosphopantetheinyl transferase domain superfamily CleRt_RS07000 IPR008278 4'-phosphopantetheinyl transferase domain CleRt_RS07015 IPR006214 Bax inhibitor 1-related CleRt_RS07060 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding CleRt_RS07060 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 CleRt_RS07060 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 CleRt_RS07060 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CleRt_RS07060 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial CleRt_RS07060 IPR000924 Glutamyl/glutaminyl-tRNA synthetase CleRt_RS07060 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain CleRt_RS07060 IPR033910 Glutamyl-tRNA synthetase CleRt_RS07060 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS07075 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS07075 IPR004566 Pantothenate kinase CleRt_RS07075 IPR006083 Phosphoribulokinase/uridine kinase CleRt_RS07110 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form CleRt_RS07110 IPR005130 Serine dehydratase-like, alpha subunit CleRt_RS07110 IPR005131 Serine dehydratase beta chain CleRt_RS07110 IPR029009 Allosteric substrate binding domain superfamily CleRt_RS07160 IPR002305 Aminoacyl-tRNA synthetase, class Ic CleRt_RS07160 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CleRt_RS07160 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 CleRt_RS07160 IPR024088 Tyrosine-tRNA ligase, bacterial-type CleRt_RS07160 IPR002307 Tyrosine-tRNA ligase CleRt_RS07160 IPR036986 RNA-binding S4 domain superfamily CleRt_RS07160 IPR002942 RNA-binding S4 domain CleRt_RS07160 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS07250 IPR042094 Type II secretion system F domain superfamily CleRt_RS07250 IPR018076 Type II secretion system F domain CleRt_RS07250 IPR001992 Type II secretion system conserved site CleRt_RS07250 IPR003004 GspF/PilC family CleRt_RS07255 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS07255 IPR001977 Dephospho-CoA kinase CleRt_RS07260 IPR036268 ZapD domain superfamily CleRt_RS07260 IPR027462 Z ring-associated protein D, C-terminal CleRt_RS07260 IPR009777 Cell division protein ZapD CleRt_RS07270 IPR011115 SecA DEAD-like, N-terminal CleRt_RS07270 IPR036670 SecA, preprotein cross-linking domain superfamily CleRt_RS07270 IPR036266 SecA, Wing/Scaffold superfamily CleRt_RS07270 IPR011116 SecA Wing/Scaffold CleRt_RS07270 IPR011130 SecA, preprotein cross-linking domain CleRt_RS07270 IPR014018 SecA motor DEAD CleRt_RS07270 IPR020937 SecA conserved site CleRt_RS07270 IPR000185 Protein translocase subunit SecA CleRt_RS07270 IPR004027 SEC-C motif CleRt_RS07270 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS07285 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS07285 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase CleRt_RS07285 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal CleRt_RS07285 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal CleRt_RS07290 IPR000158 Cell division protein FtsZ CleRt_RS07290 IPR003008 Tubulin/FtsZ, GTPase domain CleRt_RS07290 IPR036525 Tubulin/FtsZ, GTPase domain superfamily CleRt_RS07290 IPR008280 Tubulin/FtsZ, C-terminal CleRt_RS07290 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain CleRt_RS07290 IPR024757 Cell division protein FtsZ, C-terminal CleRt_RS07290 IPR020805 Cell division protein FtsZ, conserved site CleRt_RS07295 IPR003494 SHS2 domain inserted in FtsA CleRt_RS07295 IPR020823 Cell division protein FtsA CleRt_RS07305 IPR026579 Cell division protein FtsQ CleRt_RS07305 IPR034746 POTRA domain CleRt_RS07305 IPR013685 POTRA domain, FtsQ-type CleRt_RS07305 IPR005548 Cell division protein FtsQ/DivIB CleRt_RS07310 IPR016169 FAD-binding, type PCMH, subdomain 2 CleRt_RS07310 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily CleRt_RS07310 IPR006094 FAD linked oxidase, N-terminal CleRt_RS07310 IPR016166 FAD-binding domain, PCMH-type CleRt_RS07310 IPR036318 FAD-binding, type PCMH-like superfamily CleRt_RS07310 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal CleRt_RS07310 IPR016167 FAD-binding, type PCMH, subdomain 1 CleRt_RS07310 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase CleRt_RS07315 IPR013221 Mur ligase, central CleRt_RS07315 IPR004101 Mur ligase, C-terminal CleRt_RS07315 IPR036565 Mur-like, catalytic domain superfamily CleRt_RS07315 IPR000713 Mur ligase, N-terminal catalytic domain CleRt_RS07315 IPR005758 UDP-N-acetylmuramate--L-alanine ligase CleRt_RS07315 IPR036615 Mur ligase, C-terminal domain superfamily CleRt_RS07320 IPR004276 Glycosyltransferase family 28, N-terminal domain CleRt_RS07320 IPR007235 Glycosyl transferase, family 28, C-terminal CleRt_RS07320 IPR006009 N-acetylglucosaminyltransferase, MurG CleRt_RS07325 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CleRt_RS07325 IPR013437 Probable peptidoglycan glycosyltransferase FtsW CleRt_RS07325 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CleRt_RS07330 IPR036565 Mur-like, catalytic domain superfamily CleRt_RS07330 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase CleRt_RS07330 IPR004101 Mur ligase, C-terminal CleRt_RS07330 IPR036615 Mur ligase, C-terminal domain superfamily CleRt_RS07330 IPR013221 Mur ligase, central CleRt_RS07335 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase CleRt_RS07335 IPR000715 Glycosyl transferase, family 4 CleRt_RS07335 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CleRt_RS07340 IPR004101 Mur ligase, C-terminal CleRt_RS07340 IPR036565 Mur-like, catalytic domain superfamily CleRt_RS07340 IPR000713 Mur ligase, N-terminal catalytic domain CleRt_RS07340 IPR035911 MurE/MurF, N-terminal CleRt_RS07340 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase CleRt_RS07340 IPR036615 Mur ligase, C-terminal domain superfamily CleRt_RS07340 IPR013221 Mur ligase, central CleRt_RS07345 IPR035911 MurE/MurF, N-terminal CleRt_RS07345 IPR000713 Mur ligase, N-terminal catalytic domain CleRt_RS07345 IPR013221 Mur ligase, central CleRt_RS07345 IPR036615 Mur ligase, C-terminal domain superfamily CleRt_RS07345 IPR004101 Mur ligase, C-terminal CleRt_RS07345 IPR036565 Mur-like, catalytic domain superfamily CleRt_RS07345 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase CleRt_RS07350 IPR012338 Beta-lactamase/transpeptidase-like CleRt_RS07350 IPR037532 Peptidoglycan D,D-transpeptidase FtsI CleRt_RS07350 IPR001460 Penicillin-binding protein, transpeptidase CleRt_RS07350 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CleRt_RS07350 IPR005311 Penicillin-binding protein, dimerisation domain CleRt_RS07355 IPR011922 Cell division protein FtsL CleRt_RS07360 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily CleRt_RS07360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS07360 IPR002903 Ribosomal RNA small subunit methyltransferase H CleRt_RS07375 IPR013149 Alcohol dehydrogenase, C-terminal CleRt_RS07375 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CleRt_RS07375 IPR004627 L-threonine 3-dehydrogenase CleRt_RS07375 IPR036291 NAD(P)-binding domain superfamily CleRt_RS07375 IPR011032 GroES-like superfamily CleRt_RS07375 IPR013154 Alcohol dehydrogenase, N-terminal CleRt_RS07375 IPR020843 Polyketide synthase, enoylreductase domain CleRt_RS07380 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase CleRt_RS07380 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CleRt_RS07380 IPR004839 Aminotransferase, class I/classII CleRt_RS07380 IPR015424 Pyridoxal phosphate-dependent transferase CleRt_RS07380 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CleRt_RS07380 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CleRt_RS07450 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase CleRt_RS07450 IPR000462 CDP-alcohol phosphatidyltransferase CleRt_RS07460 IPR027379 Cardiolipin synthase N-terminal CleRt_RS07460 IPR025202 Phospholipase D-like domain CleRt_RS07460 IPR001736 Phospholipase D/Transphosphatidylase CleRt_RS07460 IPR030874 Cardiolipin synthase, Firmicutes-type CleRt_RS07460 IPR022924 Cardiolipin synthase CleRt_RS07470 IPR003593 AAA+ ATPase domain CleRt_RS07470 IPR004176 Clp, N-terminal CleRt_RS07470 IPR001270 ClpA/B family CleRt_RS07470 IPR036628 Clp, N-terminal domain superfamily CleRt_RS07470 IPR019489 Clp ATPase, C-terminal CleRt_RS07470 IPR017730 Chaperonin ClpB CleRt_RS07470 IPR003959 ATPase, AAA-type, core CleRt_RS07470 IPR018368 ClpA/B, conserved site 1 CleRt_RS07470 IPR028299 ClpA/B, conserved site 2 CleRt_RS07470 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS07470 IPR041546 ClpA/ClpB, AAA lid domain CleRt_RS07490 IPR036737 OmpA-like domain superfamily CleRt_RS07490 IPR006665 OmpA-like domain CleRt_RS07490 IPR006664 Outer membrane protein, bacterial CleRt_RS07490 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal CleRt_RS07490 IPR039001 Peptidoglycan-associated lipoprotein CleRt_RS07490 IPR006690 Outer membrane protein, OmpA-like, conserved site CleRt_RS07495 IPR011659 WD40-like Beta Propeller CleRt_RS07495 IPR011042 Six-bladed beta-propeller, TolB-like CleRt_RS07495 IPR014167 Tol-Pal system protein TolB CleRt_RS07495 IPR036752 TolB, N-terminal domain superfamily CleRt_RS07495 IPR007195 TolB, N-terminal CleRt_RS07515 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CleRt_RS07515 IPR036621 Anticodon-binding domain superfamily CleRt_RS07515 IPR004154 Anticodon-binding CleRt_RS07515 IPR002316 Proline-tRNA ligase, class IIa CleRt_RS07515 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type CleRt_RS07515 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CleRt_RS07515 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 CleRt_RS07515 IPR033730 Prokaryote proline-tRNA ligase core domain CleRt_RS07515 IPR006195 Aminoacyl-tRNA synthetase, class II CleRt_RS07515 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily CleRt_RS07520 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site CleRt_RS07520 IPR036188 FAD/NAD(P)-binding domain superfamily CleRt_RS07520 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 CleRt_RS07520 IPR002938 FAD-binding domain CleRt_RS07525 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site CleRt_RS07525 IPR036188 FAD/NAD(P)-binding domain superfamily CleRt_RS07525 IPR002938 FAD-binding domain CleRt_RS07525 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 CleRt_RS07530 IPR000587 Creatinase, N-terminal CleRt_RS07530 IPR036005 Creatinase/aminopeptidase-like CleRt_RS07530 IPR001714 Peptidase M24, methionine aminopeptidase CleRt_RS07530 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CleRt_RS07530 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CleRt_RS07530 IPR000994 Peptidase M24 CleRt_RS07540 IPR036192 Cell division protein ZapA-like superfamily CleRt_RS07540 IPR007838 Cell division protein ZapA-like CleRt_RS07540 IPR023771 Cell division protein ZapA, eubacteria CleRt_RS07545 IPR002698 5-formyltetrahydrofolate cyclo-ligase CleRt_RS07545 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CleRt_RS07545 IPR037171 NagB/RpiA transferase-like CleRt_RS07565 IPR003594 Histidine kinase/HSP90-like ATPase CleRt_RS07565 IPR006171 TOPRIM domain CleRt_RS07565 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative CleRt_RS07565 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CleRt_RS07565 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CleRt_RS07565 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CleRt_RS07565 IPR001241 DNA topoisomerase, type IIA CleRt_RS07565 IPR002288 DNA gyrase B subunit, C-terminal CleRt_RS07565 IPR018522 DNA topoisomerase, type IIA, conserved site CleRt_RS07565 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CleRt_RS07565 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS07565 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS07570 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal CleRt_RS07570 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily CleRt_RS07570 IPR039901 3-deoxy-D-manno-octulosonic acid transferase CleRt_RS07580 IPR030470 UbiA prenyltransferase conserved site CleRt_RS07580 IPR000537 UbiA prenyltransferase family CleRt_RS07580 IPR039653 Prenyltransferase CleRt_RS07580 IPR006370 4-hydroxybenzoate polyprenyltransferase-like CleRt_RS07665 IPR029001 Inosine triphosphate pyrophosphatase-like CleRt_RS07665 IPR002637 Ham1-like protein CleRt_RS07665 IPR020922 dITP/XTP pyrophosphatase CleRt_RS07675 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific CleRt_RS07675 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CleRt_RS07675 IPR004556 Methyltransferase HemK-like CleRt_RS07675 IPR007848 Methyltransferase small domain CleRt_RS07675 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS07675 IPR040758 Release factor glutamine methyltransferase, N-terminal domain CleRt_RS07680 IPR004373 Peptide chain release factor 1 CleRt_RS07680 IPR000352 Peptide chain release factor class I CleRt_RS07680 IPR005139 Peptide chain release factor CleRt_RS07685 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily CleRt_RS07685 IPR036291 NAD(P)-binding domain superfamily CleRt_RS07685 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase CleRt_RS07685 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain CleRt_RS07685 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily CleRt_RS07685 IPR018214 Glutamyl-tRNA reductase, conserved site CleRt_RS07685 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal CleRt_RS07685 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CleRt_RS07690 IPR006157 Dihydroneopterin aldolase/epimerase domain CleRt_RS07690 IPR006156 Dihydroneopterin aldolase CleRt_RS07695 IPR037187 DksA, N-terminal domain superfamily CleRt_RS07695 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria CleRt_RS07695 IPR000962 Zinc finger, DksA/TraR C4-type CleRt_RS07695 IPR012784 RNA polymerase-binding transcription factor DksA CleRt_RS07695 IPR020458 Zinc finger, DksA/TraR C4-type conserved site CleRt_RS07700 IPR018510 Diaminopimelate epimerase, active site CleRt_RS07700 IPR001653 Diaminopimelate epimerase, DapF CleRt_RS07720 IPR020889 LPS-assembly protein LptD CleRt_RS07720 IPR007543 LptD, C-terminal CleRt_RS07725 IPR027304 Trigger factor/SurA domain superfamily CleRt_RS07725 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CleRt_RS07725 IPR023034 Peptidyl-prolyl isomerase SurA CleRt_RS07725 IPR015391 SurA N-terminal CleRt_RS07730 IPR005255 PdxA family CleRt_RS07730 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase CleRt_RS07735 IPR023165 rRNA adenine dimethylase-like CleRt_RS07735 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS07735 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal CleRt_RS07735 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site CleRt_RS07735 IPR011530 Ribosomal RNA adenine dimethylase CleRt_RS07735 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CleRt_RS07745 IPR002142 Peptidase S49 CleRt_RS07745 IPR029045 ClpP/crotonase-like domain superfamily CleRt_RS07745 IPR023171 Na/H antiporter domain superfamily CleRt_RS07745 IPR004670 Na+/H+ antiporter NhaA CleRt_RS07750 IPR029052 Metallo-dependent phosphatase-like CleRt_RS07750 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CleRt_RS07750 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) CleRt_RS07755 IPR017925 Dihydrofolate reductase conserved site CleRt_RS07755 IPR001796 Dihydrofolate reductase domain CleRt_RS07755 IPR024072 Dihydrofolate reductase-like domain superfamily CleRt_RS07755 IPR012259 Dihydrofolate reductase CleRt_RS07770 IPR006543 Histidinol-phosphate phosphatase CleRt_RS07770 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase CleRt_RS07770 IPR023214 HAD superfamily CleRt_RS07770 IPR006549 HAD-superfamily hydrolase,subfamily IIIA CleRt_RS07770 IPR036412 HAD-like superfamily CleRt_RS07775 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain CleRt_RS07775 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CleRt_RS07775 IPR011034 Formyl transferase-like, C-terminal domain superfamily CleRt_RS07775 IPR036477 Formyl transferase, N-terminal domain superfamily CleRt_RS07775 IPR002376 Formyl transferase, N-terminal CleRt_RS07775 IPR037022 Formyl transferase, C-terminal domain superfamily CleRt_RS07775 IPR005793 Formyl transferase, C-terminal CleRt_RS07775 IPR005794 Methionyl-tRNA formyltransferase CleRt_RS07780 IPR007456 Smg CleRt_RS07785 IPR023406 DNA topoisomerase, type IA, active site CleRt_RS07785 IPR013497 DNA topoisomerase, type IA, central CleRt_RS07785 IPR034149 DNA topoisomerase 1, TOPRIM domain CleRt_RS07785 IPR025589 Topoisomerase C-terminal repeat CleRt_RS07785 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CleRt_RS07785 IPR000380 DNA topoisomerase, type IA CleRt_RS07785 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CleRt_RS07785 IPR006171 TOPRIM domain CleRt_RS07785 IPR023405 DNA topoisomerase, type IA, core domain CleRt_RS07785 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CleRt_RS07785 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CleRt_RS07785 IPR028612 DNA topoisomerase I, type IA CleRt_RS07785 IPR005733 DNA topoisomerase I, bacterial-type CleRt_RS07785 IPR003601 DNA topoisomerase, type IA, domain 2 CleRt_RS07790 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CleRt_RS07790 IPR023535 Threonylcarbamoyl-AMP synthase CleRt_RS07790 IPR006070 YrdC-like domain CleRt_RS07795 IPR002201 Glycosyl transferase, family 9 CleRt_RS07820 IPR008909 DALR anticodon binding CleRt_RS07820 IPR005148 Arginyl tRNA synthetase N-terminal domain CleRt_RS07820 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS07820 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CleRt_RS07820 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily CleRt_RS07820 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CleRt_RS07820 IPR035684 Arginyl-tRNA synthetase, catalytic core domain CleRt_RS07820 IPR001278 Arginine-tRNA ligase CleRt_RS07835 IPR023333 Proteasome B-type subunit CleRt_RS07835 IPR022281 ATP-dependent protease, HslV subunit CleRt_RS07835 IPR029055 Nucleophile aminohydrolases, N-terminal CleRt_RS07835 IPR001353 Proteasome, subunit alpha/beta CleRt_RS07840 IPR003959 ATPase, AAA-type, core CleRt_RS07840 IPR019489 Clp ATPase, C-terminal CleRt_RS07840 IPR003593 AAA+ ATPase domain CleRt_RS07840 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS07840 IPR004491 Heat shock protein HslU CleRt_RS07860 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS07860 IPR004033 UbiE/COQ5 methyltransferase CleRt_RS07860 IPR023576 UbiE/COQ5 methyltransferase, conserved site CleRt_RS07870 IPR011009 Protein kinase-like domain superfamily CleRt_RS07870 IPR010232 Probable protein kinase UbiB CleRt_RS07870 IPR004147 UbiB domain CleRt_RS07885 IPR007475 Ubiquinone biosynthesis accessory factor UbiK CleRt_RS07915 IPR002133 S-adenosylmethionine synthetase CleRt_RS07915 IPR022628 S-adenosylmethionine synthetase, N-terminal CleRt_RS07915 IPR022629 S-adenosylmethionine synthetase, central domain CleRt_RS07915 IPR022630 S-adenosylmethionine synthetase, C-terminal CleRt_RS07915 IPR022631 S-adenosylmethionine synthetase, conserved site CleRt_RS07915 IPR022636 S-adenosylmethionine synthetase superfamily CleRt_RS07920 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CleRt_RS07920 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site CleRt_RS07920 IPR042172 Adenosylhomocysteinase-like superfamily CleRt_RS07920 IPR000043 Adenosylhomocysteinase-like CleRt_RS07920 IPR036291 NAD(P)-binding domain superfamily CleRt_RS07960 IPR002305 Aminoacyl-tRNA synthetase, class Ic CleRt_RS07960 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS07960 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CleRt_RS07960 IPR002306 Tryptophan-tRNA ligase CleRt_RS07965 IPR034739 UvrD/AddA helicase, N-terminal CleRt_RS07965 IPR000212 DNA helicase, UvrD/REP type CleRt_RS07965 IPR005753 DNA helicase, ATP-dependent, UvrD type CleRt_RS07965 IPR014016 UvrD-like helicase, ATP-binding domain CleRt_RS07965 IPR013986 DExx box DNA helicase domain superfamily CleRt_RS07965 IPR014017 UvrD-like DNA helicase, C-terminal CleRt_RS07965 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS08030 IPR002123 Phospholipid/glycerol acyltransferase CleRt_RS08040 IPR001381 3-dehydroquinate dehydratase type I CleRt_RS08040 IPR013785 Aldolase-type TIM barrel CleRt_RS08045 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CleRt_RS08045 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CleRt_RS08045 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CleRt_RS08045 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria CleRt_RS08050 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX CleRt_RS08070 IPR012340 Nucleic acid-binding, OB-fold CleRt_RS08070 IPR011129 Cold shock domain CleRt_RS08070 IPR041703 Transcription termination factor Rho, ATP binding domain CleRt_RS08070 IPR036269 Rho termination factor, N-terminal domain superfamily CleRt_RS08070 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CleRt_RS08070 IPR003593 AAA+ ATPase domain CleRt_RS08070 IPR011113 Rho termination factor, RNA-binding domain CleRt_RS08070 IPR004665 Transcription termination factor Rho CleRt_RS08070 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS08070 IPR011112 Rho termination factor, N-terminal CleRt_RS08075 IPR013766 Thioredoxin domain CleRt_RS08075 IPR017937 Thioredoxin, conserved site CleRt_RS08075 IPR036249 Thioredoxin-like superfamily CleRt_RS08075 IPR005746 Thioredoxin CleRt_RS08080 IPR003425 CCB3/YggT CleRt_RS08090 IPR000304 Pyrroline-5-carboxylate reductase CleRt_RS08090 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CleRt_RS08090 IPR036291 NAD(P)-binding domain superfamily CleRt_RS08090 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CleRt_RS08090 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain CleRt_RS08095 IPR011078 Pyridoxal phosphate homeostasis protein CleRt_RS08095 IPR029066 PLP-binding barrel CleRt_RS08095 IPR001608 Alanine racemase, N-terminal CleRt_RS08100 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal CleRt_RS08100 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising CleRt_RS08100 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site CleRt_RS08100 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal CleRt_RS08105 IPR003774 Protein of unknown function UPF0301 CleRt_RS08110 IPR037027 YqgF/RNase H-like domain superfamily CleRt_RS08110 IPR006641 YqgF/RNase H-like domain CleRt_RS08110 IPR005227 Putative pre-16S rRNA nuclease CleRt_RS08110 IPR012337 Ribonuclease H-like superfamily CleRt_RS08115 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CleRt_RS08115 IPR002082 Aspartate carbamoyltransferase CleRt_RS08115 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CleRt_RS08115 IPR006130 Aspartate/ornithine carbamoyltransferase CleRt_RS08115 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CleRt_RS08135 IPR012136 NADP transhydrogenase, beta subunit CleRt_RS08135 IPR029035 DHS-like NAD/FAD-binding domain superfamily CleRt_RS08135 IPR034300 NADP transhydrogenase beta-like domain CleRt_RS08395 IPR001036 Acriflavin resistance protein CleRt_RS08395 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CleRt_RS08395 IPR023931 Multidrug resistance protein MdtC CleRt_RS08520 IPR025158 Mg chelatase-related protein, C-terminal domain CleRt_RS08520 IPR004482 Mg chelatase-related protein CleRt_RS08520 IPR001208 MCM domain CleRt_RS08520 IPR003593 AAA+ ATPase domain CleRt_RS08520 IPR000523 Magnesium chelatase ChlI domain CleRt_RS08520 IPR020568 Ribosomal protein S5 domain 2-type fold CleRt_RS08520 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS08520 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CleRt_RS08545 IPR004573 rRNA small subunit methyltransferase B CleRt_RS08545 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site CleRt_RS08545 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal CleRt_RS08545 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type CleRt_RS08545 IPR035926 NusB-like superfamily CleRt_RS08545 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS08545 IPR006027 NusB/RsmB/TIM44 CleRt_RS08545 IPR023267 RNA (C5-cytosine) methyltransferase CleRt_RS08550 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS08550 IPR004573 rRNA small subunit methyltransferase B CleRt_RS08550 IPR006027 NusB/RsmB/TIM44 CleRt_RS08550 IPR035926 NusB-like superfamily CleRt_RS08550 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type CleRt_RS08550 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal CleRt_RS08550 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site CleRt_RS08550 IPR023267 RNA (C5-cytosine) methyltransferase CleRt_RS08555 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS08555 IPR003682 rRNA small subunit methyltransferase G CleRt_RS08580 IPR003333 Mycolic acid cyclopropane synthase CleRt_RS08580 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS08685 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS08685 IPR042181 Type II secretion system, protein E, N-terminal CleRt_RS08685 IPR001482 Type II/IV secretion system protein CleRt_RS08685 IPR013369 Type II secretion system GspE CleRt_RS08685 IPR037257 General secretory system II, protein E, N-terminal superfamily CleRt_RS08690 IPR003004 GspF/PilC family CleRt_RS08690 IPR001992 Type II secretion system conserved site CleRt_RS08690 IPR018076 Type II secretion system F domain CleRt_RS08690 IPR042094 Type II secretion system F domain superfamily CleRt_RS08725 IPR022910 Thiol:disulphide interchange protein DsbD CleRt_RS08725 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CleRt_RS08725 IPR036249 Thioredoxin-like superfamily CleRt_RS08725 IPR013766 Thioredoxin domain CleRt_RS08725 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain CleRt_RS08725 IPR035671 DsbD gamma CleRt_RS08725 IPR017937 Thioredoxin, conserved site CleRt_RS08725 IPR003834 Cytochrome C biogenesis protein, transmembrane domain CleRt_RS08750 IPR020843 Polyketide synthase, enoylreductase domain CleRt_RS08750 IPR036291 NAD(P)-binding domain superfamily CleRt_RS08750 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CleRt_RS08750 IPR014030 Beta-ketoacyl synthase, N-terminal CleRt_RS08750 IPR014031 Beta-ketoacyl synthase, C-terminal CleRt_RS08750 IPR011032 GroES-like superfamily CleRt_RS08750 IPR013154 Alcohol dehydrogenase, N-terminal CleRt_RS08750 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CleRt_RS08750 IPR014043 Acyl transferase CleRt_RS08750 IPR018201 Beta-ketoacyl synthase, active site CleRt_RS08750 IPR020807 Polyketide synthase, dehydratase domain CleRt_RS08750 IPR036736 ACP-like superfamily CleRt_RS08750 IPR013968 Polyketide synthase, ketoreductase domain CleRt_RS08750 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CleRt_RS08750 IPR009081 Phosphopantetheine binding ACP domain CleRt_RS08750 IPR006162 Phosphopantetheine attachment site CleRt_RS08750 IPR032821 Ketoacyl-synthetase, C-terminal extension CleRt_RS08750 IPR042104 Polyketide synthase, dehydratase domain superfamily CleRt_RS08750 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CleRt_RS08750 IPR016039 Thiolase-like CleRt_RS08805 IPR017441 Protein kinase, ATP binding site CleRt_RS08805 IPR000719 Protein kinase domain CleRt_RS08805 IPR005543 PASTA domain CleRt_RS08805 IPR011009 Protein kinase-like domain superfamily CleRt_RS08805 IPR008271 Serine/threonine-protein kinase, active site CleRt_RS08825 IPR013785 Aldolase-type TIM barrel CleRt_RS08825 IPR003830 (2R)-phospho-3-sulpholactate synthase, ComA CleRt_RS08825 IPR036112 (2R)-phospho-3-sulpholactate synthase, ComA superfamily CleRt_RS08880 IPR005651 Trm112-like CleRt_RS08885 IPR011009 Protein kinase-like domain superfamily CleRt_RS08885 IPR005543 PASTA domain CleRt_RS08885 IPR008271 Serine/threonine-protein kinase, active site CleRt_RS08885 IPR000719 Protein kinase domain CleRt_RS08885 IPR017441 Protein kinase, ATP binding site CleRt_RS08905 IPR036112 (2R)-phospho-3-sulpholactate synthase, ComA superfamily CleRt_RS08905 IPR003830 (2R)-phospho-3-sulpholactate synthase, ComA CleRt_RS08905 IPR013785 Aldolase-type TIM barrel CleRt_RS08960 IPR005651 Trm112-like CleRt_RS08965 IPR011009 Protein kinase-like domain superfamily CleRt_RS08965 IPR005543 PASTA domain CleRt_RS08965 IPR000719 Protein kinase domain CleRt_RS08965 IPR017441 Protein kinase, ATP binding site CleRt_RS08965 IPR008271 Serine/threonine-protein kinase, active site CleRt_RS09035 IPR000390 Small multidrug resistance protein family CleRt_RS09050 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CleRt_RS09050 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type CleRt_RS09075 IPR004803 tRNA-guanine transglycosylase CleRt_RS09075 IPR002616 tRNA-guanine(15) transglycosylase-like CleRt_RS09075 IPR036511 Queuine tRNA-ribosyltransferase-like CleRt_RS09125 IPR004114 THUMP domain CleRt_RS09125 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CleRt_RS09125 IPR020536 Thil, AANH domain CleRt_RS09125 IPR003720 tRNA sulfurtransferase ThiI CleRt_RS09190 IPR013785 Aldolase-type TIM barrel CleRt_RS09190 IPR006638 Elp3/MiaB/NifB CleRt_RS09190 IPR040086 Protein MJ0683-like CleRt_RS09190 IPR007197 Radical SAM CleRt_RS09265 IPR004619 Type III pantothenate kinase CleRt_RS09280 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like CleRt_RS09280 IPR022770 Ferric iron reductase FhuF domain CleRt_RS09280 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal CleRt_RS09340 IPR025657 RadC-like JAB domain CleRt_RS09340 IPR001405 Uncharacterised protein family UPF0758 CleRt_RS09340 IPR020891 Uncharacterised protein family UPF0758, conserved site CleRt_RS09340 IPR037518 MPN domain CleRt_RS09340 IPR010994 RuvA domain 2-like CleRt_RS09345 IPR020891 Uncharacterised protein family UPF0758, conserved site CleRt_RS09345 IPR001405 Uncharacterised protein family UPF0758 CleRt_RS09345 IPR010994 RuvA domain 2-like CleRt_RS09345 IPR025657 RadC-like JAB domain CleRt_RS09345 IPR037518 MPN domain CleRt_RS09360 IPR000473 Ribosomal protein L36 CleRt_RS09360 IPR035977 Ribosomal protein L36 superfamily CleRt_RS09370 IPR010071 Amino acid adenylation domain CleRt_RS09370 IPR013968 Polyketide synthase, ketoreductase domain CleRt_RS09370 IPR042104 Polyketide synthase, dehydratase domain superfamily CleRt_RS09370 IPR020807 Polyketide synthase, dehydratase domain CleRt_RS09370 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CleRt_RS09370 IPR032821 Ketoacyl-synthetase, C-terminal extension CleRt_RS09370 IPR036291 NAD(P)-binding domain superfamily CleRt_RS09370 IPR014030 Beta-ketoacyl synthase, N-terminal CleRt_RS09370 IPR009081 Phosphopantetheine binding ACP domain CleRt_RS09370 IPR006162 Phosphopantetheine attachment site CleRt_RS09370 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CleRt_RS09370 IPR014031 Beta-ketoacyl synthase, C-terminal CleRt_RS09370 IPR018201 Beta-ketoacyl synthase, active site CleRt_RS09370 IPR001242 Condensation domain CleRt_RS09370 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CleRt_RS09370 IPR042099 AMP-dependent synthetase-like superfamily CleRt_RS09370 IPR000873 AMP-dependent synthetase/ligase CleRt_RS09370 IPR020845 AMP-binding, conserved site CleRt_RS09370 IPR025110 AMP-binding enzyme, C-terminal domain CleRt_RS09370 IPR036736 ACP-like superfamily CleRt_RS09370 IPR016039 Thiolase-like CleRt_RS09440 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CleRt_RS09440 IPR007440 Chorismate--pyruvate lyase CleRt_RS09445 IPR037257 General secretory system II, protein E, N-terminal superfamily CleRt_RS09445 IPR001482 Type II/IV secretion system protein CleRt_RS09445 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS09445 IPR003593 AAA+ ATPase domain CleRt_RS09445 IPR007831 General secretory system II, protein E, N-terminal CleRt_RS09465 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CleRt_RS09465 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily CleRt_RS09465 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily CleRt_RS09465 IPR018214 Glutamyl-tRNA reductase, conserved site CleRt_RS09465 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal CleRt_RS09465 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain CleRt_RS09465 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase CleRt_RS09465 IPR036291 NAD(P)-binding domain superfamily CleRt_RS09500 IPR008271 Serine/threonine-protein kinase, active site CleRt_RS09500 IPR017441 Protein kinase, ATP binding site CleRt_RS09500 IPR000719 Protein kinase domain CleRt_RS09500 IPR005543 PASTA domain CleRt_RS09500 IPR011009 Protein kinase-like domain superfamily CleRt_RS09515 IPR039421 Type I protein exporter CleRt_RS09515 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS09515 IPR017871 ABC transporter, conserved site CleRt_RS09515 IPR003439 ABC transporter-like CleRt_RS09515 IPR011527 ABC transporter type 1, transmembrane domain CleRt_RS09515 IPR003593 AAA+ ATPase domain CleRt_RS09515 IPR036640 ABC transporter type 1, transmembrane domain superfamily CleRt_RS09520 IPR003593 AAA+ ATPase domain CleRt_RS09520 IPR011527 ABC transporter type 1, transmembrane domain CleRt_RS09520 IPR036640 ABC transporter type 1, transmembrane domain superfamily CleRt_RS09520 IPR003439 ABC transporter-like CleRt_RS09520 IPR027417 P-loop containing nucleoside triphosphate hydrolase CleRt_RS09520 IPR017871 ABC transporter, conserved site CleRt_RS09525 IPR001633 EAL domain CleRt_RS09525 IPR035919 EAL domain superfamily CleRt_RS09525 IPR000160 GGDEF domain CleRt_RS09525 IPR003660 HAMP domain CleRt_RS09525 IPR029787 Nucleotide cyclase