locus-tag	class	description
phytr_RS00040	COG2205	protein histidine kinase activity
phytr_RS00080	COG1309	transcriptional regulator
phytr_RS00085	COG2239	Acts as a magnesium transporter
phytr_RS00095	COG2807	transmembrane transport
phytr_RS00105	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
phytr_RS00110	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
phytr_RS00140	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
phytr_RS00145	COG4520	surface antigen
phytr_RS00150	COG0779	Required for maturation of 30S ribosomal subunits
phytr_RS00155	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
phytr_RS00155	COG0195	Participates in both transcription termination and antitermination
phytr_RS00165	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
phytr_RS00170	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
phytr_RS00175	COG1115	amino acid carrier protein
phytr_RS00185	COG0194	GDP metabolic process
phytr_RS00205	COG0728	peptidoglycan biosynthetic process
phytr_RS00215	COG0666	response to abiotic stimulus
phytr_RS00220	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
phytr_RS00235	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
phytr_RS00240	COG0084	hydrolase, TatD family'
phytr_RS00245	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
phytr_RS00250	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
phytr_RS00255	COG3838	Conjugal transfer protein Trbc
phytr_RS00270	COG0473	3-isopropylmalate dehydrogenase activity
phytr_RS00275	COG5410	chromosome segregation
phytr_RS00295	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
phytr_RS00300	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
phytr_RS00320	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
phytr_RS00325	COG0210	DNA helicase
phytr_RS00330	COG0698	ribose 5-phosphate isomerase
phytr_RS00340	COG0336	Belongs to the RNA methyltransferase TrmD family
phytr_RS00370	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
phytr_RS00375	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
phytr_RS00395	COG0564	pseudouridine synthase activity
phytr_RS00420	COG0756	dUTP diphosphatase activity
phytr_RS00425	COG2027	D-alanyl-D-alanine carboxypeptidase
phytr_RS00435	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
phytr_RS00480	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
phytr_RS00485	COG0316	Belongs to the HesB IscA family
phytr_RS00495	COG0018	arginyl-trna synthetase
phytr_RS00520	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
phytr_RS00530	COG0681	Belongs to the peptidase S26 family
phytr_RS00535	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
phytr_RS00570	COG2885	chlorophyll binding
phytr_RS00580	COG3202	ADP transmembrane transporter activity
phytr_RS00590	COG1965	Belongs to the frataxin family
phytr_RS00615	COG0233	cytoplasmic translational termination
phytr_RS00640	COG1999	signal sequence binding
phytr_RS00670	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
phytr_RS00675	COG0537	adenosine 5'-monophosphoramidase activity
phytr_RS00685	COG0606	chelatase, subunit chli
phytr_RS00705	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
phytr_RS00710	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
phytr_RS00715	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
phytr_RS00720	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
phytr_RS00725	COG0355	proton-transporting ATP synthase activity, rotational mechanism
phytr_RS00730	COG0720	synthase
phytr_RS00745	COG1121	(ABC) transporter
phytr_RS00755	COG2902	Dehydrogenase
phytr_RS00760	COG0525	valine-tRNA ligase activity
phytr_RS00790	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
phytr_RS00795	COG0039	L-malate dehydrogenase activity
phytr_RS00820	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
phytr_RS00825	COG2945	thiolester hydrolase activity
phytr_RS00840	COG0745	RESPONSE REGULATOR receiver
phytr_RS00850	COG3243	poly(R)-hydroxyalkanoic acid synthase
phytr_RS00855	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
phytr_RS00865	COG1250	3-hydroxyacyl-CoA dehydrogenase
phytr_RS00865	COG1024	Enoyl-CoA hydratase
phytr_RS00910	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
phytr_RS00950	COG0085	RNA polymerase activity
phytr_RS00950	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
phytr_RS00960	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
phytr_RS00960	COG0072	phenylalanine-tRNA ligase activity
phytr_RS00965	COG3118	belongs to the thioredoxin family
phytr_RS00980	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
phytr_RS00980	COG0321	lipoyl(octanoyl) transferase activity
phytr_RS01005	COG0552	protein localization to endoplasmic reticulum
phytr_RS01025	COG0302	gtp cyclohydrolase
phytr_RS01030	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
phytr_RS01035	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
phytr_RS01040	COG1216	Glycosyl transferase, family 2
phytr_RS01045	COG0482	sulfurtransferase activity
phytr_RS01050	COG0531	amino acid
phytr_RS01055	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
phytr_RS01065	COG3047	cAMP biosynthetic process
phytr_RS01070	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
phytr_RS01075	COG0443	Heat shock 70 kDa protein
phytr_RS01080	COG0484	heat shock protein binding
phytr_RS01090	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
phytr_RS01120	COG0670	Belongs to the BI1 family
phytr_RS01130	COG1253	flavin adenine dinucleotide binding
phytr_RS01135	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
phytr_RS01145	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
phytr_RS01165	COG3202	ADP transmembrane transporter activity
phytr_RS01190	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
phytr_RS01195	COG4770	biotin carboxylase activity
phytr_RS01200	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
phytr_RS01235	COG4765	Protein conserved in bacteria
phytr_RS01240	COG0632	four-way junction helicase activity
phytr_RS01245	COG2255	four-way junction helicase activity
phytr_RS01270	COG0666	response to abiotic stimulus
phytr_RS01275	COG0629	single-stranded DNA binding
phytr_RS01310	COG1126	abc transporter atp-binding protein
phytr_RS01315	COG0765	amino acid transport
phytr_RS01325	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
phytr_RS01325	COG0517	IMP dehydrogenase activity
phytr_RS01340	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
phytr_RS01340	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
phytr_RS01345	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
phytr_RS01360	COG1368	sulfuric ester hydrolase activity
phytr_RS01365	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
phytr_RS01380	COG0288	reversible hydration of carbon dioxide
phytr_RS01395	COG3750	Belongs to the UPF0335 family
phytr_RS01405	COG0242	peptide deformylase activity
phytr_RS01410	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
phytr_RS01430	COG0489	protein tyrosine kinase activity
phytr_RS01445	COG0149	triose-phosphate isomerase activity
phytr_RS01470	COG0358	DNA primase activity
phytr_RS01500	COG0415	Belongs to the DNA photolyase family
phytr_RS01510	COG0758	DNA mediated transformation
phytr_RS01515	COG0450	alkyl hydroperoxide reductase
phytr_RS01535	COG0477	Major facilitator Superfamily
phytr_RS01540	COG0792	nuclease activity
phytr_RS01545	COG0227	Belongs to the bacterial ribosomal protein bL28 family
phytr_RS01550	COG0254	rRNA binding
phytr_RS01565	COG1372	Participates in initiation and elongation during chromosome replication
phytr_RS01565	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
phytr_RS01585	COG0400	carboxylic ester hydrolase activity
phytr_RS01630	COG1686	Belongs to the peptidase S11 family
phytr_RS01660	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
phytr_RS01680	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
phytr_RS01695	COG0101	tRNA pseudouridine synthase activity
phytr_RS01700	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
phytr_RS01730	COG0328	RNA-DNA hybrid ribonuclease activity
phytr_RS01740	COG3202	ADP transmembrane transporter activity
phytr_RS01755	COG0114	fumarate hydratase activity
phytr_RS01770	COG0861	Integral membrane protein TerC family
phytr_RS01810	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
phytr_RS01820	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
phytr_RS01835	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
phytr_RS01845	COG0322	excinuclease ABC activity
phytr_RS01855	COG0666	response to abiotic stimulus
phytr_RS01865	COG2333	competence protein COMEC
phytr_RS01865	COG0658	competence protein
phytr_RS01870	COG0706	membrane insertase activity
phytr_RS01875	COG1862	Preprotein translocase
phytr_RS01880	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
phytr_RS01890	COG5336	function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex
phytr_RS01905	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
phytr_RS01915	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
phytr_RS01940	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
phytr_RS01945	COG1181	Belongs to the D-alanine--D-alanine ligase family
phytr_RS01975	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
phytr_RS01980	COG0772	Belongs to the SEDS family
phytr_RS01985	COG0751	glycine-tRNA ligase activity
phytr_RS01995	COG1530	ribonuclease E activity
phytr_RS02010	COG0321	lipoyl(octanoyl) transferase activity
phytr_RS02015	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
phytr_RS02035	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
phytr_RS02045	COG4974	Belongs to the 'phage' integrase family
phytr_RS02060	COG2205	protein histidine kinase activity
phytr_RS02060	COG2202	Pas domain
phytr_RS02065	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
phytr_RS02080	COG0527	aspartate kinase activity
phytr_RS02085	COG1511	domain protein
phytr_RS02085	COG3264	Mechanosensitive ion channel
phytr_RS02095	COG0333	Belongs to the bacterial ribosomal protein bL32 family
phytr_RS02120	COG0616	signal peptide processing
phytr_RS02125	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
phytr_RS02130	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
phytr_RS02150	COG0612	Peptidase, M16
phytr_RS02155	COG1217	gtp-binding protein TYPA
phytr_RS02170	COG2226	methyltransferase
phytr_RS02180	COG1830	Aldolase
phytr_RS02185	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
phytr_RS02195	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
phytr_RS02230	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
phytr_RS02235	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
phytr_RS02240	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
phytr_RS02245	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
phytr_RS02250	COG0170	dolichyl monophosphate biosynthetic process
phytr_RS02275	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
phytr_RS02280	COG0477	Major facilitator Superfamily
phytr_RS02310	COG0556	nucleotide-excision repair
phytr_RS02315	COG0215	cysteine-tRNA ligase activity
phytr_RS02320	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
phytr_RS02325	COG0154	amidase activity
phytr_RS02345	COG0542	response to heat
phytr_RS02375	COG0330	HflC and HflK could
phytr_RS02385	COG0783	Belongs to the Dps family
phytr_RS02390	COG0492	ferredoxin-NADP+ reductase activity
phytr_RS02400	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
phytr_RS02405	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
phytr_RS02420	COG4695	Portal protein
phytr_RS02430	COG0443	Heat shock 70 kDa protein
phytr_RS02440	COG0316	Belongs to the HesB IscA family
phytr_RS02445	COG0822	iron-sulfur transferase activity
phytr_RS02455	COG1104	cysteine desulfurase activity
phytr_RS02480	COG1053	succinate dehydrogenase
phytr_RS02485	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
phytr_RS02490	COG2009	succinate dehydrogenase
phytr_RS02500	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
phytr_RS02505	COG0778	Nitroreductase
phytr_RS02510	COG0633	Ferredoxin
phytr_RS02515	COG0261	This protein binds to 23S rRNA in the presence of protein L20
phytr_RS02550	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
phytr_RS02550	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
phytr_RS02555	COG1074	ATP-dependent DNA helicase activity
phytr_RS02565	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
phytr_RS02570	COG1475	DNA binding
phytr_RS02575	COG0488	(ABC) transporter
phytr_RS02595	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
phytr_RS02645	COG3202	ADP transmembrane transporter activity
phytr_RS02660	COG4536	flavin adenine dinucleotide binding
phytr_RS02680	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
phytr_RS02710	COG0459	protein refolding
phytr_RS02715	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
phytr_RS02735	COG1132	(ABC) transporter
phytr_RS02750	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
phytr_RS02755	COG0193	aminoacyl-tRNA hydrolase activity
phytr_RS02765	COG0592	DNA-directed DNA polymerase activity
phytr_RS02780	COG1301	dicarboxylic acid transport
phytr_RS02785	COG0799	negative regulation of ribosome biogenesis
phytr_RS02790	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
phytr_RS02810	COG0567	Dehydrogenase, E1 component
phytr_RS02815	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
phytr_RS02820	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
phytr_RS02835	COG0415	Belongs to the DNA photolyase family
phytr_RS02860	COG0768	penicillin binding
phytr_RS02870	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
phytr_RS02880	COG2155	Conserved Protein
phytr_RS02895	COG1570	exodeoxyribonuclease VII activity
phytr_RS02905	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
phytr_RS02930	COG3704	protein secretion by the type IV secretion system
phytr_RS02940	COG3451	type IV secretory pathway VirB4
phytr_RS02955	COG0495	leucyl-tRNA aminoacylation
phytr_RS02960	COG1494	fructose-1,6-bisphosphatase
phytr_RS02965	COG3660	Nucleoside-diphosphate-sugar epimerase
phytr_RS02975	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
phytr_RS02980	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
phytr_RS02990	COG1007	ATP synthesis coupled electron transport
phytr_RS02995	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
phytr_RS03000	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
phytr_RS03005	COG0713	ATP synthesis coupled electron transport
phytr_RS03010	COG0839	Belongs to the complex I subunit 6 family
phytr_RS03015	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
phytr_RS03020	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
phytr_RS03025	COG1034	ATP synthesis coupled electron transport
phytr_RS03085	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
phytr_RS03170	COG2890	protein-(glutamine-N5) methyltransferase activity
phytr_RS03170	COG0220	tRNA (guanine-N7-)-methyltransferase activity
phytr_RS03175	COG2204	response regulator
phytr_RS03185	COG3621	Patatin-like phospholipase
phytr_RS03200	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
phytr_RS03205	COG0492	ferredoxin-NADP+ reductase activity
phytr_RS03215	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
phytr_RS03220	COG0683	leucine binding
phytr_RS03235	COG0012	GTP binding
phytr_RS03240	COG2814	Major facilitator Superfamily
phytr_RS03250	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
phytr_RS03255	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
phytr_RS03265	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
phytr_RS03270	COG0635	Involved in the biosynthesis of porphyrin-containing compound
phytr_RS03295	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
phytr_RS03320	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
phytr_RS03320	COG4797	methyltransferase
phytr_RS03355	COG0628	permease
phytr_RS03360	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
phytr_RS03365	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
phytr_RS03370	COG0793	Belongs to the peptidase S41A family
phytr_RS03375	COG0494	nUDIX hydrolase
phytr_RS03390	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
phytr_RS03400	COG1136	(ABC) transporter
phytr_RS03435	COG2205	protein histidine kinase activity
phytr_RS03440	COG2205	protein histidine kinase activity
phytr_RS03445	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
phytr_RS03480	COG0842	Transport permease protein
phytr_RS03485	COG1131	(ABC) transporter
phytr_RS03500	COG0183	Belongs to the thiolase family
phytr_RS03505	COG2887	Belongs to the helicase family. UvrD subfamily
phytr_RS03510	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
phytr_RS03520	COG0666	response to abiotic stimulus
phytr_RS03525	COG0666	response to abiotic stimulus
phytr_RS03550	COG0326	Molecular chaperone. Has ATPase activity
phytr_RS03555	COG3704	protein secretion by the type IV secretion system
phytr_RS03565	COG3485	protocatechuate 3,4-dioxygenase
phytr_RS03570	COG5002	protein histidine kinase activity
phytr_RS03600	COG0126	phosphoglycerate kinase activity
phytr_RS03605	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
phytr_RS03610	COG0564	pseudouridine synthase activity
phytr_RS03615	COG1187	pseudouridine synthase activity
phytr_RS03620	COG0742	ribosomal rna small subunit methyltransferase
phytr_RS03625	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
phytr_RS03630	COG1160	GTP binding
phytr_RS03660	COG2003	Belongs to the UPF0758 family
phytr_RS03665	COG0024	Methionine aminopeptidase
phytr_RS03710	COG0740	serine-type endopeptidase activity
phytr_RS03730	COG2171	N-acyltransferase activity
phytr_RS03740	COG1714	RDD family
phytr_RS03745	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
phytr_RS03745	COG2755	lipolytic protein G-D-S-L family
phytr_RS03755	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
phytr_RS03760	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
phytr_RS03765	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
phytr_RS03780	COG1131	(ABC) transporter
phytr_RS03790	COG2917	probably involved in intracellular septation
phytr_RS03810	COG0203	ribosomal protein L17
phytr_RS03815	COG0202	RNA polymerase activity
phytr_RS03820	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
phytr_RS03835	COG0201	protein transport
phytr_RS03845	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
phytr_RS03850	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
phytr_RS03855	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
phytr_RS03860	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
phytr_RS03870	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
phytr_RS03875	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
phytr_RS03880	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
phytr_RS03885	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
phytr_RS03890	COG0255	Belongs to the universal ribosomal protein uL29 family
phytr_RS03895	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
phytr_RS03905	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
phytr_RS03910	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
phytr_RS03915	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
phytr_RS03920	COG0089	rRNA binding
phytr_RS03925	COG0088	Forms part of the polypeptide exit tunnel
phytr_RS03935	COG0051	transcription antitermination factor activity, RNA binding
phytr_RS03940	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
phytr_RS03955	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
phytr_RS03970	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
phytr_RS03990	COG4095	Psort location CytoplasmicMembrane, score
phytr_RS04005	COG3046	protein related to deoxyribodipyrimidine photolyase
phytr_RS04030	COG0616	signal peptide processing
phytr_RS04030	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
phytr_RS04040	COG0009	L-threonylcarbamoyladenylate synthase
phytr_RS04045	COG1185	polyribonucleotide nucleotidyltransferase activity
phytr_RS04050	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
phytr_RS04055	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
phytr_RS04060	COG3494	Protein of unknown function (DUF1009)
phytr_RS04065	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
phytr_RS04075	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
phytr_RS04095	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
phytr_RS04110	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
phytr_RS04115	COG1127	ABC transporter
phytr_RS04140	COG0571	ribonuclease III activity
phytr_RS04145	COG0187	DNA topoisomerase II activity
phytr_RS04155	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
phytr_RS04160	COG0739	heme binding
phytr_RS04165	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
phytr_RS04180	COG0330	HflC and HflK could
phytr_RS04185	COG0330	HflC and HflK could
phytr_RS04210	COG0842	Transport permease protein
phytr_RS04215	COG0842	Transport permease protein
phytr_RS04220	COG1131	(ABC) transporter
phytr_RS04225	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
phytr_RS04230	COG1340	protein secretion by the type IV secretion system
phytr_RS04230	COG3704	protein secretion by the type IV secretion system
phytr_RS04235	COG3704	protein secretion by the type IV secretion system
phytr_RS04245	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
phytr_RS04250	COG0768	penicillin binding
phytr_RS04275	COG0602	queuosine metabolic process
phytr_RS04290	COG0230	Belongs to the bacterial ribosomal protein bL34 family
phytr_RS04315	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
phytr_RS04325	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
phytr_RS04330	COG0022	dehydrogenase e1 component
phytr_RS04335	COG0508	dehydrogenase complex catalyzes the overall conversion of
phytr_RS04340	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
phytr_RS04345	COG0285	dihydrofolate synthase activity
phytr_RS04355	COG0105	UTP biosynthetic process
phytr_RS04380	COG1663	tetraacyldisaccharide 4'-kinase activity
phytr_RS04385	COG1519	Transferase
phytr_RS04395	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
phytr_RS04435	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
phytr_RS04440	COG2226	methyltransferase
phytr_RS04500	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
phytr_RS04510	COG5002	protein histidine kinase activity
phytr_RS04515	COG0142	geranyltranstransferase activity
phytr_RS04550	COG0745	RESPONSE REGULATOR receiver
phytr_RS04565	COG0271	Belongs to the BolA IbaG family
phytr_RS04575	COG0463	Glycosyl transferase, family 2
phytr_RS04580	COG0587	DNA-directed DNA polymerase activity
phytr_RS04595	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
phytr_RS04600	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
phytr_RS04605	COG1028	Short-chain dehydrogenase reductase Sdr
phytr_RS04610	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
phytr_RS04620	COG0805	protein transport
phytr_RS04645	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
phytr_RS04660	COG3736	Type IV secretory pathway, component VirB8
phytr_RS04675	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
phytr_RS04690	COG0602	queuosine metabolic process
phytr_RS04695	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
phytr_RS04705	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
phytr_RS04710	COG0617	tRNA 3'-terminal CCA addition
phytr_RS04725	COG0281	malic enzyme
phytr_RS04725	COG0280	phosphate acetyltransferase
phytr_RS04735	COG0590	tRNA wobble adenosine to inosine editing
phytr_RS04750	COG3202	ADP transmembrane transporter activity
phytr_RS04755	COG5000	phosphorelay sensor kinase activity
phytr_RS04760	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
phytr_RS04770	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
phytr_RS04780	COG1396	sequence-specific DNA binding
phytr_RS04785	COG0815	Transfers the fatty acyl group on membrane lipoproteins
phytr_RS04855	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
phytr_RS04860	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
phytr_RS04865	COG0218	Necessary for normal cell division and for the maintenance of normal septation
phytr_RS04870	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
phytr_RS04890	COG3850	Histidine kinase
phytr_RS04890	COG5002	protein histidine kinase activity
phytr_RS04895	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
phytr_RS04905	COG1132	(ABC) transporter
phytr_RS04930	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
phytr_RS04945	COG1475	DNA binding
phytr_RS04970	COG0494	nUDIX hydrolase
phytr_RS04990	COG5002	protein histidine kinase activity
phytr_RS04990	COG3850	Histidine kinase
phytr_RS05020	COG0653	protein targeting
phytr_RS05035	COG4566	intracellular signal transduction
phytr_RS05040	COG4115	mRNA cleavage
phytr_RS05045	COG2161	toxin-antitoxin pair type II binding
phytr_RS05055	COG5464	transposase or invertase
phytr_RS05065	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
phytr_RS05110	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
phytr_RS05225	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
phytr_RS05290	COG0666	response to abiotic stimulus
phytr_RS05300	COG1214	PFAM Peptidase M22, glycoprotease
phytr_RS05310	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
phytr_RS05330	COG4133	protoheme IX ABC transporter activity
phytr_RS05335	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
phytr_RS05405	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
phytr_RS05470	COG3541	Predicted nucleotidyltransferase
phytr_RS05570	COG0666	response to abiotic stimulus
phytr_RS05625	COG1028	Short-chain dehydrogenase reductase Sdr
phytr_RS05635	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
phytr_RS05655	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
phytr_RS05660	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
phytr_RS05665	COG1674	ftsk spoiiie
phytr_RS05700	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
phytr_RS05730	COG1132	(ABC) transporter
phytr_RS05740	COG1183	phosphatidylcholine synthase activity
phytr_RS05755	COG1108	ABC-type Mn2 Zn2 transport systems permease components
phytr_RS05775	COG0424	maF-like protein
phytr_RS05780	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
phytr_RS05795	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
phytr_RS05815	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
phytr_RS05835	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
phytr_RS05865	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
phytr_RS05870	COG0360	Binds together with S18 to 16S ribosomal RNA
phytr_RS05875	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
phytr_RS05880	COG0359	binds to the 23S rRNA
phytr_RS05900	COG0456	acetyltransferase
phytr_RS05900	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
phytr_RS05925	COG0784	Response regulator, receiver
phytr_RS05925	COG2205	protein histidine kinase activity
phytr_RS05940	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
phytr_RS05945	COG0575	Belongs to the CDS family
phytr_RS05950	COG1028	Short-chain dehydrogenase reductase Sdr
phytr_RS05970	COG5002	protein histidine kinase activity
phytr_RS05990	COG1294	oxidase, subunit
phytr_RS05995	COG1271	oxidase subunit
phytr_RS06000	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
phytr_RS06010	COG0504	CTP synthase activity
phytr_RS06015	COG0802	atpase or kinase
phytr_RS06020	COG0436	Aminotransferase
phytr_RS06030	COG2853	Lipoprotein
phytr_RS06050	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
phytr_RS06055	COG1137	ATPase activity
phytr_RS06060	COG0842	Transport permease protein
phytr_RS06070	COG5002	protein histidine kinase activity
phytr_RS06080	COG0222	ribosome binding
phytr_RS06095	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
phytr_RS06100	COG0250	Participates in transcription elongation, termination and antitermination
phytr_RS06105	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
phytr_RS06130	COG1722	exodeoxyribonuclease VII activity
phytr_RS06155	COG0372	Belongs to the citrate synthase family
phytr_RS06165	COG0006	proline dipeptidase activity
phytr_RS06205	COG0666	response to abiotic stimulus
phytr_RS06215	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
phytr_RS06245	COG1136	(ABC) transporter
phytr_RS06270	COG2161	toxin-antitoxin pair type II binding