locus-tag	class	description
DDE51_RS00005	COG0321	lipoyl(octanoyl) transferase activity
DDE51_RS00015	COG0706	membrane insertase activity
DDE51_RS00020	COG0525	valine-tRNA ligase activity
DDE51_RS00025	COG0592	DNA-directed DNA polymerase activity
DDE51_RS00030	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DDE51_RS00030	COG0072	phenylalanine-tRNA ligase activity
DDE51_RS00035	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DDE51_RS00040	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DDE51_RS00045	COG0539	negative regulation of cytoplasmic translation
DDE51_RS00055	COG1252	NADH dehydrogenase
DDE51_RS00065	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DDE51_RS00070	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
DDE51_RS00085	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DDE51_RS00095	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DDE51_RS00100	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DDE51_RS00110	COG0481	GTPase activity
DDE51_RS00115	COG0470	DNA polymerase III
DDE51_RS00120	COG0826	peptidase U32
DDE51_RS00130	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DDE51_RS00150	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DDE51_RS00155	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DDE51_RS00160	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DDE51_RS00160	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DDE51_RS00165	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DDE51_RS00170	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DDE51_RS00195	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DDE51_RS00200	COG0356	it plays a direct role in the translocation of protons across the membrane
DDE51_RS00205	COG0460	homoserine dehydrogenase
DDE51_RS00205	COG0527	aspartate kinase activity
DDE51_RS00215	COG2095	MarC family integral membrane protein
DDE51_RS00225	COG0473	3-isopropylmalate dehydrogenase activity
DDE51_RS00235	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DDE51_RS00240	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DDE51_RS00250	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DDE51_RS00255	COG0495	leucyl-tRNA aminoacylation
DDE51_RS00260	COG3959	Transketolase, thiamine diphosphate binding domain
DDE51_RS00265	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DDE51_RS00275	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DDE51_RS00300	COG0101	tRNA pseudouridine synthase activity
DDE51_RS00315	COG0222	ribosome binding
DDE51_RS00320	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DDE51_RS00325	COG0081	regulation of translation
DDE51_RS00375	COG0437	4 iron, 4 sulfur cluster binding
DDE51_RS00400	COG2166	iron-sulfur cluster assembly
DDE51_RS00405	COG0142	geranyltranstransferase activity
DDE51_RS00435	COG0045	succinate-CoA ligase (ADP-forming) activity
DDE51_RS00440	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DDE51_RS00445	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DDE51_RS00455	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DDE51_RS00460	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DDE51_RS00475	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DDE51_RS00485	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DDE51_RS00490	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DDE51_RS00500	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DDE51_RS00525	COG2171	N-acyltransferase activity
DDE51_RS00535	COG0617	tRNA 3'-terminal CCA addition
DDE51_RS00545	COG0484	heat shock protein binding
DDE51_RS00555	COG1418	mRNA catabolic process
DDE51_RS00565	COG0305	Participates in initiation and elongation during chromosome replication
DDE51_RS00575	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DDE51_RS00580	COG0280	phosphate acetyltransferase
DDE51_RS00580	COG0857	belongs to the CobB CobQ family
DDE51_RS00585	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DDE51_RS00605	COG0137	argininosuccinate synthase activity
DDE51_RS00615	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DDE51_RS00620	COG0505	Belongs to the CarA family
DDE51_RS00635	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DDE51_RS00655	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DDE51_RS00660	COG0037	tRNA processing
DDE51_RS00670	COG0133	tryptophan synthase activity
DDE51_RS00675	COG0134	indole-3-glycerol-phosphate synthase activity
DDE51_RS00680	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DDE51_RS00685	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DDE51_RS00685	COG0512	Glutamine amidotransferase of anthranilate synthase
DDE51_RS00690	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DDE51_RS00695	COG0442	prolyl-tRNA aminoacylation
DDE51_RS00705	COG0019	diaminopimelate decarboxylase activity
DDE51_RS00720	COG0326	Molecular chaperone. Has ATPase activity
DDE51_RS00725	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DDE51_RS00735	COG0335	large ribosomal subunit rRNA binding
DDE51_RS00740	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DDE51_RS00745	COG0423	glycine-tRNA ligase activity
DDE51_RS00750	COG1575	Belongs to the MenA family. Type 1 subfamily
DDE51_RS00755	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DDE51_RS00760	COG0083	homoserine kinase activity
DDE51_RS00765	COG0460	homoserine dehydrogenase
DDE51_RS00765	COG0527	aspartate kinase activity
DDE51_RS00810	COG2217	Heavy metal translocating P-type atpase
DDE51_RS00825	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DDE51_RS00830	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DDE51_RS00855	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DDE51_RS00855	COG1333	cytochrome c biogenesis protein
DDE51_RS00860	COG1333	cytochrome c biogenesis protein
DDE51_RS00860	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DDE51_RS00870	COG0233	cytoplasmic translational termination
DDE51_RS00875	COG0017	Asparaginyl-tRNA synthetase
DDE51_RS00905	COG0360	Binds together with S18 to 16S ribosomal RNA
DDE51_RS00915	COG0359	binds to the 23S rRNA
DDE51_RS00940	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
DDE51_RS00945	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
DDE51_RS00950	COG0681	Belongs to the peptidase S26 family
DDE51_RS00960	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DDE51_RS00970	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DDE51_RS00990	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DDE51_RS00995	COG0567	Dehydrogenase, E1 component
DDE51_RS01000	COG0508	dehydrogenase complex catalyzes the overall conversion of
DDE51_RS01005	COG0805	protein transport
DDE51_RS01010	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
DDE51_RS01015	COG0488	(ABC) transporter
DDE51_RS01020	COG2151	metal-sulfur cluster biosynthetic enzyme
DDE51_RS01045	COG0719	Fe-S assembly protein
DDE51_RS01050	COG0396	ATPase activity
DDE51_RS01055	COG0719	Fe-S assembly protein
DDE51_RS01060	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DDE51_RS01065	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DDE51_RS01070	COG2877	3-deoxy-8-phosphooctulonate synthase activity
DDE51_RS01080	COG1605	Chorismate mutase
DDE51_RS01080	COG0077	Prephenate dehydratase
DDE51_RS01085	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DDE51_RS01120	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DDE51_RS01125	COG0187	DNA topoisomerase II activity
DDE51_RS01135	COG0436	Aminotransferase
DDE51_RS01140	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DDE51_RS01145	COG0508	dehydrogenase complex catalyzes the overall conversion of
DDE51_RS01145	COG0022	dehydrogenase e1 component
DDE51_RS01150	COG0191	fructose-bisphosphate aldolase activity
DDE51_RS01160	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DDE51_RS01175	COG2226	methyltransferase
DDE51_RS01180	COG0254	rRNA binding
DDE51_RS01200	COG0051	transcription antitermination factor activity, RNA binding
DDE51_RS01210	COG0088	Forms part of the polypeptide exit tunnel
DDE51_RS01245	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DDE51_RS01265	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DDE51_RS01290	COG1841	ribosomal large subunit assembly
DDE51_RS01295	COG0200	Binds to the 23S rRNA
DDE51_RS01300	COG0201	protein transport
DDE51_RS01305	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DDE51_RS01330	COG0202	RNA polymerase activity
DDE51_RS01335	COG0203	ribosomal protein L17
DDE51_RS01340	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DDE51_RS01355	COG1012	belongs to the aldehyde dehydrogenase family
DDE51_RS01360	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DDE51_RS01365	COG0165	Argininosuccinate lyase
DDE51_RS01370	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
DDE51_RS01380	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DDE51_RS01385	COG0508	dehydrogenase complex catalyzes the overall conversion of
DDE51_RS01390	COG0861	Integral membrane protein TerC family
DDE51_RS01395	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DDE51_RS01410	COG0492	ferredoxin-NADP+ reductase activity
DDE51_RS01415	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DDE51_RS01425	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DDE51_RS01430	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DDE51_RS01440	COG0028	Belongs to the TPP enzyme family
DDE51_RS01445	COG0129	dihydroxy-acid dehydratase activity