THSYN_RS00045	PWY-381	nitrate reduction II (assimilatory)
THSYN_RS00045	PWY-5675	nitrate reduction V (assimilatory)
THSYN_RS00045	PWY-6549	L-glutamine biosynthesis III
THSYN_RS00045	PWY-6963	ammonia assimilation cycle I
THSYN_RS00045	PWY-6964	ammonia assimilation cycle II
THSYN_RS00075	PWY-6004	glycine betaine biosynthesis V (from glycine)
THSYN_RS00115	PWY-5667	CDP-diacylglycerol biosynthesis I
THSYN_RS00115	PWY-5981	CDP-diacylglycerol biosynthesis III
THSYN_RS00145	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THSYN_RS00145	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THSYN_RS00145	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THSYN_RS00255	PWY-4983	L-citrulline-nitric oxide cycle
THSYN_RS00255	PWY-4984	urea cycle
THSYN_RS00255	PWY-5	canavanine biosynthesis
THSYN_RS00255	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS00255	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THSYN_RS00315	PWY-5941	glycogen degradation II (eukaryotic)
THSYN_RS00315	PWY-6724	starch degradation II
THSYN_RS00315	PWY-6737	starch degradation V
THSYN_RS00315	PWY-7238	sucrose biosynthesis II
THSYN_RS00320	PWY-6700	queuosine biosynthesis
THSYN_RS00340	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS00370	PWY-5747	2-methylcitrate cycle II
THSYN_RS00385	PWY-5132	humulone biosynthesis
THSYN_RS00385	PWY-5133	cohumulone biosynthesis
THSYN_RS00385	PWY-6672	<i>cis</i>-genanyl-CoA degradation
THSYN_RS00385	PWY-7118	chitin degradation to ethanol
THSYN_RS00385	PWY-7857	THSYN_RS00385
THSYN_RS00440	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS00475	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS00555	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
THSYN_RS00555	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
THSYN_RS00815	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
THSYN_RS00815	PWY-622	starch biosynthesis
THSYN_RS00820	PWY-622	starch biosynthesis
THSYN_RS00825	PWY-5941	glycogen degradation II (eukaryotic)
THSYN_RS00825	PWY-6724	starch degradation II
THSYN_RS00825	PWY-6737	starch degradation V
THSYN_RS00825	PWY-7238	sucrose biosynthesis II
THSYN_RS00875	PWY-5381	pyridine nucleotide cycling (plants)
THSYN_RS00875	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
THSYN_RS00875	PWY-7761	THSYN_RS00875
THSYN_RS00895	PWY-5392	reductive TCA cycle II
THSYN_RS00895	PWY-5537	pyruvate fermentation to acetate V
THSYN_RS00895	PWY-5538	pyruvate fermentation to acetate VI
THSYN_RS00895	PWY-5690	TCA cycle II (plants and fungi)
THSYN_RS00895	PWY-5913	TCA cycle VI (obligate autotrophs)
THSYN_RS00895	PWY-6728	methylaspartate cycle
THSYN_RS00895	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS00895	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
THSYN_RS00900	PWY-5392	reductive TCA cycle II
THSYN_RS00900	PWY-5537	pyruvate fermentation to acetate V
THSYN_RS00900	PWY-5538	pyruvate fermentation to acetate VI
THSYN_RS00900	PWY-5690	TCA cycle II (plants and fungi)
THSYN_RS00900	PWY-5913	TCA cycle VI (obligate autotrophs)
THSYN_RS00900	PWY-6728	methylaspartate cycle
THSYN_RS00900	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS00900	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
THSYN_RS00915	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS00975	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THSYN_RS00975	PWY-5723	Rubisco shunt
THSYN_RS01010	PWY-7799	THSYN_RS01010
THSYN_RS01010	PWY-7800	THSYN_RS01010
THSYN_RS01060	PWY-6703	preQ<sub>0</sub> biosynthesis
THSYN_RS01070	PWY-6703	preQ<sub>0</sub> biosynthesis
THSYN_RS01180	PWY-6891	thiazole biosynthesis II (Bacillus)
THSYN_RS01180	PWY-6892	thiazole biosynthesis I (E. coli)
THSYN_RS01180	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS01215	PWY-6825	phosphatidylcholine biosynthesis V
THSYN_RS01260	PWY-5941	glycogen degradation II (eukaryotic)
THSYN_RS01260	PWY-6724	starch degradation II
THSYN_RS01260	PWY-6737	starch degradation V
THSYN_RS01260	PWY-7238	sucrose biosynthesis II
THSYN_RS01515	PWY-2201	folate transformations I
THSYN_RS01535	PWY-5839	menaquinol-7 biosynthesis
THSYN_RS01535	PWY-5844	menaquinol-9 biosynthesis
THSYN_RS01535	PWY-5849	menaquinol-6 biosynthesis
THSYN_RS01535	PWY-5890	menaquinol-10 biosynthesis
THSYN_RS01535	PWY-5891	menaquinol-11 biosynthesis
THSYN_RS01535	PWY-5892	menaquinol-12 biosynthesis
THSYN_RS01535	PWY-5895	menaquinol-13 biosynthesis
THSYN_RS01695	PWY-6123	inosine-5'-phosphate biosynthesis I
THSYN_RS01695	PWY-6124	inosine-5'-phosphate biosynthesis II
THSYN_RS01695	PWY-7234	inosine-5'-phosphate biosynthesis III
THSYN_RS01705	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THSYN_RS01705	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THSYN_RS01705	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THSYN_RS01710	PWY-5686	UMP biosynthesis
THSYN_RS01735	PWY-5692	allantoin degradation to glyoxylate II
THSYN_RS01735	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
THSYN_RS01865	PWY-6891	thiazole biosynthesis II (Bacillus)
THSYN_RS01865	PWY-6892	thiazole biosynthesis I (E. coli)
THSYN_RS01935	PWY-5316	nicotine biosynthesis
THSYN_RS01935	PWY-5381	pyridine nucleotide cycling (plants)
THSYN_RS01935	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
THSYN_RS01935	PWY-7342	superpathway of nicotine biosynthesis
THSYN_RS01945	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
THSYN_RS01945	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
THSYN_RS02080	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THSYN_RS02080	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
THSYN_RS02125	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THSYN_RS02125	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THSYN_RS02275	PWY-5506	methanol oxidation to formaldehyde IV
THSYN_RS02295	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS02295	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THSYN_RS02295	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS02295	PWY-7385	1,3-propanediol biosynthesis (engineered)
THSYN_RS02300	PWY-7805	THSYN_RS02300
THSYN_RS02300	PWY-7807	THSYN_RS02300
THSYN_RS02305	PWY-7805	THSYN_RS02305
THSYN_RS02305	PWY-7807	THSYN_RS02305
THSYN_RS02350	PWY-6749	CMP-legionaminate biosynthesis I
THSYN_RS02565	PWY-2941	L-lysine biosynthesis II
THSYN_RS02565	PWY-2942	L-lysine biosynthesis III
THSYN_RS02565	PWY-5097	L-lysine biosynthesis VI
THSYN_RS02575	PWY-2941	L-lysine biosynthesis II
THSYN_RS02575	PWY-5097	L-lysine biosynthesis VI
THSYN_RS02640	PWY-5057	L-valine degradation II
THSYN_RS02640	PWY-5076	L-leucine degradation III
THSYN_RS02640	PWY-5078	L-isoleucine degradation II
THSYN_RS02640	PWY-5101	L-isoleucine biosynthesis II
THSYN_RS02640	PWY-5103	L-isoleucine biosynthesis III
THSYN_RS02640	PWY-5104	L-isoleucine biosynthesis IV
THSYN_RS02640	PWY-5108	L-isoleucine biosynthesis V
THSYN_RS02640	PWY-7767	THSYN_RS02640
THSYN_RS02730	PWY-5723	Rubisco shunt
THSYN_RS02930	PWY-7019	butirosin biosynthesis
THSYN_RS02940	PWY-4381	fatty acid biosynthesis initiation I
THSYN_RS03245	PWY-6164	3-dehydroquinate biosynthesis I
THSYN_RS03250	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THSYN_RS03255	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
THSYN_RS03255	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
THSYN_RS03275	PWY-5381	pyridine nucleotide cycling (plants)
THSYN_RS03275	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
THSYN_RS03275	PWY-7761	THSYN_RS03275
THSYN_RS03285	PWY-3841	folate transformations II
THSYN_RS03285	PWY-6614	tetrahydrofolate biosynthesis
THSYN_RS03330	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS03460	PWY-6502	oxidized GTP and dGTP detoxification
THSYN_RS03460	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
THSYN_RS03460	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
THSYN_RS03460	PWY-6897	thiamin salvage II
THSYN_RS03460	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
THSYN_RS03460	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
THSYN_RS03460	PWY-7356	thiamin salvage IV (yeast)
THSYN_RS03460	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
THSYN_RS03465	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS03520	PWY-2201	folate transformations I
THSYN_RS03535	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THSYN_RS03535	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THSYN_RS03540	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THSYN_RS03540	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THSYN_RS03540	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THSYN_RS03545	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THSYN_RS03545	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THSYN_RS03555	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THSYN_RS03555	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
THSYN_RS03555	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THSYN_RS03555	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THSYN_RS03560	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THSYN_RS03560	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THSYN_RS03565	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THSYN_RS03565	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THSYN_RS03570	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THSYN_RS03570	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THSYN_RS03590	PWY-2201	folate transformations I
THSYN_RS03590	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS03675	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
THSYN_RS03675	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THSYN_RS03675	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
THSYN_RS03785	PWY-5704	urea degradation II
THSYN_RS03790	PWY-5704	urea degradation II
THSYN_RS03800	PWY-5704	urea degradation II
THSYN_RS03860	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THSYN_RS03865	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
THSYN_RS03865	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
THSYN_RS03865	PWY-6897	thiamin salvage II
THSYN_RS03865	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
THSYN_RS03865	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
THSYN_RS03865	PWY-7356	thiamin salvage IV (yeast)
THSYN_RS03865	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
THSYN_RS03890	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS03890	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THSYN_RS03955	PWY-5913	TCA cycle VI (obligate autotrophs)
THSYN_RS03955	PWY-6549	L-glutamine biosynthesis III
THSYN_RS03955	PWY-6728	methylaspartate cycle
THSYN_RS03955	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS03955	PWY-7124	ethylene biosynthesis V (engineered)
THSYN_RS03955	PWY-7254	TCA cycle VII (acetate-producers)
THSYN_RS03955	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THSYN_RS03985	PWY-7799	THSYN_RS03985
THSYN_RS03990	PWY-7801	THSYN_RS03990
THSYN_RS04070	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THSYN_RS04075	PWY-7205	CMP phosphorylation
THSYN_RS04275	PWY-6936	seleno-amino acid biosynthesis
THSYN_RS04560	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
THSYN_RS04560	PWY-6549	L-glutamine biosynthesis III
THSYN_RS04560	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
THSYN_RS04560	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
THSYN_RS04695	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THSYN_RS04850	PWY-2201	folate transformations I
THSYN_RS04850	PWY-3841	folate transformations II
THSYN_RS04855	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
THSYN_RS04860	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
THSYN_RS04860	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
THSYN_RS04870	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THSYN_RS04870	PWY-5723	Rubisco shunt
THSYN_RS04870	PWY-6891	thiazole biosynthesis II (Bacillus)
THSYN_RS04870	PWY-6892	thiazole biosynthesis I (E. coli)
THSYN_RS04870	PWY-6901	superpathway of glucose and xylose degradation
THSYN_RS04870	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS04875	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS04875	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS04875	PWY-6901	superpathway of glucose and xylose degradation
THSYN_RS04875	PWY-7003	glycerol degradation to butanol
THSYN_RS04880	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS04880	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS04880	PWY-6886	1-butanol autotrophic biosynthesis
THSYN_RS04880	PWY-6901	superpathway of glucose and xylose degradation
THSYN_RS04880	PWY-7003	glycerol degradation to butanol
THSYN_RS04885	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS04885	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THSYN_RS04885	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS04885	PWY-5723	Rubisco shunt
THSYN_RS04885	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS04885	PWY-6886	1-butanol autotrophic biosynthesis
THSYN_RS04885	PWY-6901	superpathway of glucose and xylose degradation
THSYN_RS04885	PWY-7003	glycerol degradation to butanol
THSYN_RS04885	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THSYN_RS04885	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THSYN_RS04890	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS04890	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THSYN_RS04890	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS04890	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS04890	PWY-7385	1,3-propanediol biosynthesis (engineered)
THSYN_RS05145	PWY-7294	xylose degradation IV
THSYN_RS05145	PWY-7295	L-arabinose degradation IV
THSYN_RS05375	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THSYN_RS05635	PWY-6825	phosphatidylcholine biosynthesis V
THSYN_RS05640	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THSYN_RS05640	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
THSYN_RS05645	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THSYN_RS05645	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
THSYN_RS05660	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
THSYN_RS05660	PWY-7820	THSYN_RS05660
THSYN_RS05830	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS05965	PWY-3221	dTDP-L-rhamnose biosynthesis II
THSYN_RS05965	PWY-6808	dTDP-D-forosamine biosynthesis
THSYN_RS05965	PWY-6942	dTDP-D-desosamine biosynthesis
THSYN_RS05965	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
THSYN_RS05965	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
THSYN_RS05965	PWY-6974	dTDP-L-olivose biosynthesis
THSYN_RS05965	PWY-6976	dTDP-L-mycarose biosynthesis
THSYN_RS05965	PWY-7104	dTDP-L-megosamine biosynthesis
THSYN_RS05965	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
THSYN_RS05965	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
THSYN_RS05965	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
THSYN_RS05965	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
THSYN_RS05965	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
THSYN_RS05965	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
THSYN_RS05965	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
THSYN_RS05965	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
THSYN_RS05965	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
THSYN_RS05965	PWY-7688	THSYN_RS05965
THSYN_RS05965	PWY-7814	THSYN_RS05965
THSYN_RS05970	PWY-3221	dTDP-L-rhamnose biosynthesis II
THSYN_RS05970	PWY-6808	dTDP-D-forosamine biosynthesis
THSYN_RS05970	PWY-6942	dTDP-D-desosamine biosynthesis
THSYN_RS05970	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
THSYN_RS05970	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
THSYN_RS05970	PWY-6974	dTDP-L-olivose biosynthesis
THSYN_RS05970	PWY-6976	dTDP-L-mycarose biosynthesis
THSYN_RS05970	PWY-7104	dTDP-L-megosamine biosynthesis
THSYN_RS05970	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
THSYN_RS05970	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
THSYN_RS05970	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
THSYN_RS05970	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
THSYN_RS05970	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
THSYN_RS05970	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
THSYN_RS05970	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
THSYN_RS05970	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
THSYN_RS05970	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
THSYN_RS05970	PWY-7688	THSYN_RS05970
THSYN_RS05970	PWY-7814	THSYN_RS05970
THSYN_RS05995	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THSYN_RS05995	PWY-6164	3-dehydroquinate biosynthesis I
THSYN_RS05995	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
THSYN_RS06010	PWY-6871	3-methylbutanol biosynthesis
THSYN_RS06170	PWY-4981	L-proline biosynthesis II (from arginine)
THSYN_RS06170	PWY-4984	urea cycle
THSYN_RS06170	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THSYN_RS06270	PWY-1281	sulfoacetaldehyde degradation I
THSYN_RS06270	PWY-5482	pyruvate fermentation to acetate II
THSYN_RS06270	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS06270	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS06270	PWY-6637	sulfolactate degradation II
THSYN_RS06275	PWY-5482	pyruvate fermentation to acetate II
THSYN_RS06275	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS06275	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS06350	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THSYN_RS06350	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THSYN_RS06350	PWY-5989	stearate biosynthesis II (bacteria and plants)
THSYN_RS06350	PWY-6113	superpathway of mycolate biosynthesis
THSYN_RS06350	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THSYN_RS06350	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THSYN_RS06350	PWY-7663	gondoate biosynthesis (anaerobic)
THSYN_RS06350	PWY-7664	oleate biosynthesis IV (anaerobic)
THSYN_RS06350	PWY-7858	THSYN_RS06350
THSYN_RS06350	PWYG-321	mycolate biosynthesis
THSYN_RS06620	PWY-6871	3-methylbutanol biosynthesis
THSYN_RS06640	PWY-6749	CMP-legionaminate biosynthesis I
THSYN_RS06715	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS07005	PWY-6823	molybdenum cofactor biosynthesis
THSYN_RS07005	PWY-6891	thiazole biosynthesis II (Bacillus)
THSYN_RS07005	PWY-6892	thiazole biosynthesis I (E. coli)
THSYN_RS07005	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
THSYN_RS07400	PWY-6700	queuosine biosynthesis
THSYN_RS07430	PWY-6454	vancomycin resistance I
THSYN_RS07430	PWY-6455	vancomycin resistance II
THSYN_RS07585	PWY-3781	aerobic respiration I (cytochrome c)
THSYN_RS07585	PWY-4302	aerobic respiration III (alternative oxidase pathway)
THSYN_RS07585	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THSYN_RS07585	PWY-5690	TCA cycle II (plants and fungi)
THSYN_RS07585	PWY-6728	methylaspartate cycle
THSYN_RS07585	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS07585	PWY-7254	TCA cycle VII (acetate-producers)
THSYN_RS07585	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THSYN_RS07590	PWY-3781	aerobic respiration I (cytochrome c)
THSYN_RS07590	PWY-4302	aerobic respiration III (alternative oxidase pathway)
THSYN_RS07590	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THSYN_RS07590	PWY-5690	TCA cycle II (plants and fungi)
THSYN_RS07590	PWY-6728	methylaspartate cycle
THSYN_RS07590	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS07590	PWY-7254	TCA cycle VII (acetate-producers)
THSYN_RS07590	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THSYN_RS07640	PWY-2201	folate transformations I
THSYN_RS07645	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THSYN_RS07645	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
THSYN_RS07645	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THSYN_RS07645	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS07645	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
THSYN_RS07645	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THSYN_RS07645	PWY-7205	CMP phosphorylation
THSYN_RS07645	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THSYN_RS07645	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS07645	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS07645	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS07645	PWY-7224	purine deoxyribonucleosides salvage
THSYN_RS07645	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
THSYN_RS07645	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
THSYN_RS07690	PWY-3961	phosphopantothenate biosynthesis II
THSYN_RS07875	PWY-5941	glycogen degradation II (eukaryotic)
THSYN_RS07875	PWY-6731	starch degradation III
THSYN_RS07875	PWY-6737	starch degradation V
THSYN_RS07875	PWY-7238	sucrose biosynthesis II
THSYN_RS07890	PWY-5659	GDP-mannose biosynthesis
THSYN_RS07890	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
THSYN_RS08065	PWY-2941	L-lysine biosynthesis II
THSYN_RS08065	PWY-2942	L-lysine biosynthesis III
THSYN_RS08065	PWY-5097	L-lysine biosynthesis VI
THSYN_RS08280	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THSYN_RS08280	PWY-6164	3-dehydroquinate biosynthesis I
THSYN_RS08280	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
THSYN_RS08335	PWY-1001	cellulose biosynthesis
THSYN_RS08335	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THSYN_RS08335	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
THSYN_RS08335	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THSYN_RS08335	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THSYN_RS08360	PWY-5316	nicotine biosynthesis
THSYN_RS08360	PWY-7342	superpathway of nicotine biosynthesis
THSYN_RS08420	PWY-842	starch degradation I
THSYN_RS08565	PWY-6803	phosphatidylcholine acyl editing
THSYN_RS08565	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
THSYN_RS08565	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
THSYN_RS08565	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
THSYN_RS08565	PWY-7783	THSYN_RS08565
THSYN_RS08570	PWY-6679	jadomycin biosynthesis
THSYN_RS08570	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THSYN_RS08605	PWY-2201	folate transformations I
THSYN_RS08605	PWY-3841	folate transformations II
THSYN_RS08825	PWY-5381	pyridine nucleotide cycling (plants)
THSYN_RS08825	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
THSYN_RS08825	PWY-6596	adenosine nucleotides degradation I
THSYN_RS08825	PWY-6606	guanosine nucleotides degradation II
THSYN_RS08825	PWY-6607	guanosine nucleotides degradation I
THSYN_RS08825	PWY-6608	guanosine nucleotides degradation III
THSYN_RS08825	PWY-7185	UTP and CTP dephosphorylation I
THSYN_RS08825	PWY-7821	THSYN_RS08825
THSYN_RS08845	PWY-3781	aerobic respiration I (cytochrome c)
THSYN_RS08845	PWY-4521	arsenite oxidation I (respiratory)
THSYN_RS08845	PWY-6692	Fe(II) oxidation
THSYN_RS08845	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THSYN_RS09040	PWY-7805	THSYN_RS09040
THSYN_RS09040	PWY-7807	THSYN_RS09040
THSYN_RS09055	PWY-7294	xylose degradation IV
THSYN_RS09055	PWY-7295	L-arabinose degradation IV
THSYN_RS09175	PWY-6348	phosphate acquisition
THSYN_RS09190	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
THSYN_RS09480	PWY-6902	chitin degradation II
THSYN_RS09480	PWY-7822	THSYN_RS09480
THSYN_RS09605	PWY-5382	hydrogen oxidation II (aerobic, NAD)
THSYN_RS09605	PWY-6758	hydrogen production II
THSYN_RS09910	PWY-3121	linamarin degradation
THSYN_RS09910	PWY-5176	coumarin biosynthesis (via 2-coumarate)
THSYN_RS09910	PWY-6002	lotaustralin degradation
THSYN_RS09910	PWY-6788	cellulose degradation II (fungi)
THSYN_RS09910	PWY-7091	linustatin bioactivation
THSYN_RS09910	PWY-7092	neolinustatin bioactivation
THSYN_RS10135	PWY-3801	sucrose degradation II (sucrose synthase)
THSYN_RS10135	PWY-5054	sorbitol biosynthesis I
THSYN_RS10135	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
THSYN_RS10135	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THSYN_RS10135	PWY-5659	GDP-mannose biosynthesis
THSYN_RS10135	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS10135	PWY-621	sucrose degradation III (sucrose invertase)
THSYN_RS10135	PWY-622	starch biosynthesis
THSYN_RS10135	PWY-6981	chitin biosynthesis
THSYN_RS10135	PWY-6992	1,5-anhydrofructose degradation
THSYN_RS10135	PWY-7238	sucrose biosynthesis II
THSYN_RS10135	PWY-7347	sucrose biosynthesis III
THSYN_RS10135	PWY-7385	1,3-propanediol biosynthesis (engineered)
THSYN_RS10140	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THSYN_RS10145	PWY-622	starch biosynthesis
THSYN_RS10325	PWY-1341	phenylacetate degradation II (anaerobic)
THSYN_RS10325	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
THSYN_RS10325	PWY-7716	THSYN_RS10325
THSYN_RS10335	PWY-1341	phenylacetate degradation II (anaerobic)
THSYN_RS10335	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
THSYN_RS10335	PWY-7716	THSYN_RS10335
THSYN_RS10400	PWY-1622	formaldehyde assimilation I (serine pathway)
THSYN_RS10400	PWY-5392	reductive TCA cycle II
THSYN_RS10400	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THSYN_RS10400	PWY-5690	TCA cycle II (plants and fungi)
THSYN_RS10400	PWY-5913	TCA cycle VI (obligate autotrophs)
THSYN_RS10400	PWY-6728	methylaspartate cycle
THSYN_RS10400	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS10400	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
THSYN_RS10400	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THSYN_RS10480	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THSYN_RS10480	PWY-5723	Rubisco shunt
THSYN_RS10500	PWY-5747	2-methylcitrate cycle II
THSYN_RS10535	PWY-6123	inosine-5'-phosphate biosynthesis I
THSYN_RS10535	PWY-6124	inosine-5'-phosphate biosynthesis II
THSYN_RS10535	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS10535	PWY-7234	inosine-5'-phosphate biosynthesis III
THSYN_RS10800	PWY-3081	L-lysine biosynthesis V
THSYN_RS10800	PWY-6871	3-methylbutanol biosynthesis
THSYN_RS10800	PWY-7710	THSYN_RS10800
THSYN_RS10805	PWY-6936	seleno-amino acid biosynthesis
THSYN_RS10805	PWY-7274	D-cycloserine biosynthesis
THSYN_RS10890	PWY-7396	butanol and isobutanol biosynthesis (engineered)
THSYN_RS10895	PWY-2941	L-lysine biosynthesis II
THSYN_RS10895	PWY-2942	L-lysine biosynthesis III
THSYN_RS10895	PWY-5097	L-lysine biosynthesis VI
THSYN_RS10895	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS10895	PWY-6559	spermidine biosynthesis II
THSYN_RS10895	PWY-6562	norspermidine biosynthesis
THSYN_RS10895	PWY-7153	grixazone biosynthesis
THSYN_RS10895	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THSYN_RS10925	PWY-6679	jadomycin biosynthesis
THSYN_RS10925	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THSYN_RS10970	PWY-2161	folate polyglutamylation
THSYN_RS10985	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THSYN_RS10985	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THSYN_RS10985	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THSYN_RS10985	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
THSYN_RS11075	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THSYN_RS11075	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THSYN_RS11075	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THSYN_RS11085	PWY-6825	phosphatidylcholine biosynthesis V
THSYN_RS11295	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
THSYN_RS11295	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
THSYN_RS11310	PWY-6823	molybdenum cofactor biosynthesis
THSYN_RS11310	PWY-6891	thiazole biosynthesis II (Bacillus)
THSYN_RS11310	PWY-6892	thiazole biosynthesis I (E. coli)
THSYN_RS11310	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
THSYN_RS11340	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS11480	PWY-5381	pyridine nucleotide cycling (plants)
THSYN_RS11605	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
THSYN_RS11610	PWY-2201	folate transformations I
THSYN_RS11610	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THSYN_RS11615	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THSYN_RS11620	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THSYN_RS11620	PWY-6578	8-amino-7-oxononanoate biosynthesis III
THSYN_RS11620	PWY-7147	8-amino-7-oxononanoate biosynthesis II
THSYN_RS11625	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
THSYN_RS11635	PWY-5480	pyruvate fermentation to ethanol I
THSYN_RS11635	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS11635	PWY-5493	reductive monocarboxylic acid cycle
THSYN_RS11665	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
THSYN_RS11710	PWY-5941	glycogen degradation II (eukaryotic)
THSYN_RS11710	PWY-6724	starch degradation II
THSYN_RS11710	PWY-6737	starch degradation V
THSYN_RS11710	PWY-7238	sucrose biosynthesis II
THSYN_RS11715	PWY-622	starch biosynthesis
THSYN_RS11780	PWY-3781	aerobic respiration I (cytochrome c)
THSYN_RS11780	PWY-6692	Fe(II) oxidation
THSYN_RS11780	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
THSYN_RS11780	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THSYN_RS11830	PWY-5101	L-isoleucine biosynthesis II
THSYN_RS11830	PWY-5103	L-isoleucine biosynthesis III
THSYN_RS11830	PWY-5104	L-isoleucine biosynthesis IV
THSYN_RS11830	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THSYN_RS12300	PWY-6936	seleno-amino acid biosynthesis
THSYN_RS12585	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THSYN_RS12585	PWY-6148	tetrahydromethanopterin biosynthesis
THSYN_RS12585	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
THSYN_RS12585	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
THSYN_RS12695	PWY-6123	inosine-5'-phosphate biosynthesis I
THSYN_RS12695	PWY-6124	inosine-5'-phosphate biosynthesis II
THSYN_RS12695	PWY-7234	inosine-5'-phosphate biosynthesis III
THSYN_RS12730	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS12865	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS12865	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS12865	PWY-7766	THSYN_RS12865
THSYN_RS12880	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
THSYN_RS12880	PWY-5743	3-hydroxypropanoate cycle
THSYN_RS12880	PWY-5744	glyoxylate assimilation
THSYN_RS12880	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
THSYN_RS12880	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS12880	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
THSYN_RS12880	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
THSYN_RS12890	PWY-46	putrescine biosynthesis III
THSYN_RS12890	PWY-6305	putrescine biosynthesis IV
THSYN_RS13155	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THSYN_RS13155	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THSYN_RS13155	PWY-5989	stearate biosynthesis II (bacteria and plants)
THSYN_RS13155	PWY-6113	superpathway of mycolate biosynthesis
THSYN_RS13155	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THSYN_RS13155	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THSYN_RS13155	PWY-7663	gondoate biosynthesis (anaerobic)
THSYN_RS13155	PWY-7664	oleate biosynthesis IV (anaerobic)
THSYN_RS13155	PWY-7858	THSYN_RS13155
THSYN_RS13155	PWYG-321	mycolate biosynthesis
THSYN_RS13220	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS13245	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
THSYN_RS13250	PWY-1281	sulfoacetaldehyde degradation I
THSYN_RS13250	PWY-5482	pyruvate fermentation to acetate II
THSYN_RS13250	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS13250	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS13250	PWY-6637	sulfolactate degradation II
THSYN_RS13345	PWY-6891	thiazole biosynthesis II (Bacillus)
THSYN_RS13345	PWY-6892	thiazole biosynthesis I (E. coli)
THSYN_RS13345	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS13355	PWY-5532	adenosine nucleotides degradation IV
THSYN_RS13355	PWY-5723	Rubisco shunt
THSYN_RS13455	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
THSYN_RS13455	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
THSYN_RS13685	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
THSYN_RS13685	PWY-5368	dimorphecolate biosynthesis
THSYN_RS13685	PWY-5995	linoleate biosynthesis I (plants)
THSYN_RS13685	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
THSYN_RS13685	PWY-6803	phosphatidylcholine acyl editing
THSYN_RS13685	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
THSYN_RS13685	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
THSYN_RS13685	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
THSYN_RS13685	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
THSYN_RS13685	PWY-7470	phosphatidylcholine biosynthesis VII
THSYN_RS13685	PWY-7618	ricinoleate biosynthesis
THSYN_RS13720	PWY-5316	nicotine biosynthesis
THSYN_RS13720	PWY-7342	superpathway of nicotine biosynthesis
THSYN_RS13740	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THSYN_RS13980	PWY-5381	pyridine nucleotide cycling (plants)
THSYN_RS13980	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
THSYN_RS13980	PWY-6596	adenosine nucleotides degradation I
THSYN_RS13980	PWY-6606	guanosine nucleotides degradation II
THSYN_RS13980	PWY-6607	guanosine nucleotides degradation I
THSYN_RS13980	PWY-6608	guanosine nucleotides degradation III
THSYN_RS13980	PWY-7185	UTP and CTP dephosphorylation I
THSYN_RS13980	PWY-7821	THSYN_RS13980
THSYN_RS14085	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
THSYN_RS14085	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
THSYN_RS14085	PWY-6268	adenosylcobalamin salvage from cobalamin
THSYN_RS14085	PWY-6269	adenosylcobalamin salvage from cobinamide II
THSYN_RS14090	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
THSYN_RS14090	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
THSYN_RS14090	PWY-6269	adenosylcobalamin salvage from cobinamide II
THSYN_RS14095	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
THSYN_RS14095	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
THSYN_RS14095	PWY-6269	adenosylcobalamin salvage from cobinamide II
THSYN_RS14145	PWY-5669	phosphatidylethanolamine biosynthesis I
THSYN_RS14250	PWY-5723	Rubisco shunt
THSYN_RS14330	PWY-4621	arsenate detoxification II (glutaredoxin)
THSYN_RS14455	PWY-6825	phosphatidylcholine biosynthesis V
THSYN_RS14485	PWY-6012	acyl carrier protein metabolism I
THSYN_RS14485	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
THSYN_RS14815	PWY-6857	retinol biosynthesis
THSYN_RS14910	PWY-2201	folate transformations I
THSYN_RS14920	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
THSYN_RS14920	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
THSYN_RS15015	PWY-2301	<i>myo</i>-inositol biosynthesis
THSYN_RS15015	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
THSYN_RS15015	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
THSYN_RS15015	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
THSYN_RS15015	PWY-6664	di-myo-inositol phosphate biosynthesis
THSYN_RS15765	PWY-6728	methylaspartate cycle
THSYN_RS15765	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS15765	PWY-7118	chitin degradation to ethanol
THSYN_RS15765	PWY-7294	xylose degradation IV
THSYN_RS15765	PWY-7295	L-arabinose degradation IV
THSYN_RS15765	PWY-7854	THSYN_RS15765
THSYN_RS15795	PWY-2781	<i>cis</i>-zeatin biosynthesis
THSYN_RS16170	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THSYN_RS16170	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THSYN_RS16170	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS16170	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
THSYN_RS16170	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THSYN_RS16170	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THSYN_RS16180	PWY-6543	4-aminobenzoate biosynthesis
THSYN_RS16195	PWY-5367	petroselinate biosynthesis
THSYN_RS16195	PWY-5515	L-arabinose degradation II
THSYN_RS16195	PWY-5525	D-glucuronate degradation I
THSYN_RS16195	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THSYN_RS16195	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THSYN_RS16195	PWY-5989	stearate biosynthesis II (bacteria and plants)
THSYN_RS16195	PWY-5994	palmitate biosynthesis I (animals and fungi)
THSYN_RS16195	PWY-6113	superpathway of mycolate biosynthesis
THSYN_RS16195	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THSYN_RS16195	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THSYN_RS16195	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THSYN_RS16195	PWY-7663	gondoate biosynthesis (anaerobic)
THSYN_RS16195	PWY-7664	oleate biosynthesis IV (anaerobic)
THSYN_RS16195	PWY-7858	THSYN_RS16195
THSYN_RS16195	PWYG-321	mycolate biosynthesis
THSYN_RS16200	PWY-4381	fatty acid biosynthesis initiation I
THSYN_RS16200	PWY-6799	fatty acid biosynthesis (plant mitochondria)
THSYN_RS16200	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THSYN_RS16205	PWY-4381	fatty acid biosynthesis initiation I
THSYN_RS16310	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS16380	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS16385	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
THSYN_RS16385	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
THSYN_RS16500	PWY-5278	sulfite oxidation III
THSYN_RS16500	PWY-5340	sulfate activation for sulfonation
THSYN_RS16500	PWY-6683	sulfate reduction III (assimilatory)
THSYN_RS16500	PWY-6932	selenate reduction
THSYN_RS16510	PWY-5278	sulfite oxidation III
THSYN_RS16510	PWY-5279	sulfite oxidation II
THSYN_RS16555	PWY-5172	acetyl-CoA biosynthesis III (from citrate)
THSYN_RS16555	PWY-5392	reductive TCA cycle II
THSYN_RS16555	PWY-5537	pyruvate fermentation to acetate V
THSYN_RS16555	PWY-5538	pyruvate fermentation to acetate VI
THSYN_RS16555	PWY-5690	TCA cycle II (plants and fungi)
THSYN_RS16555	PWY-5913	TCA cycle VI (obligate autotrophs)
THSYN_RS16555	PWY-6728	methylaspartate cycle
THSYN_RS16555	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS16555	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
THSYN_RS16590	PWY-1281	sulfoacetaldehyde degradation I
THSYN_RS16590	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
THSYN_RS16590	PWY-5482	pyruvate fermentation to acetate II
THSYN_RS16590	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS16590	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS16590	PWY-6637	sulfolactate degradation II
THSYN_RS16590	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
THSYN_RS16620	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THSYN_RS16695	PWY-6167	flavin biosynthesis II (archaea)
THSYN_RS16695	PWY-6168	flavin biosynthesis III (fungi)
THSYN_RS16695	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS16700	PWY-5525	D-glucuronate degradation I
THSYN_RS16710	PWY-1622	formaldehyde assimilation I (serine pathway)
THSYN_RS16710	PWY-181	photorespiration
THSYN_RS16710	PWY-2161	folate polyglutamylation
THSYN_RS16710	PWY-2201	folate transformations I
THSYN_RS16710	PWY-3661	glycine betaine degradation I
THSYN_RS16710	PWY-3661-1	glycine betaine degradation II (mammalian)
THSYN_RS16710	PWY-3841	folate transformations II
THSYN_RS16710	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS16715	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
THSYN_RS16715	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
THSYN_RS16715	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
THSYN_RS16715	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
THSYN_RS16715	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
THSYN_RS16715	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
THSYN_RS16715	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
THSYN_RS16715	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
THSYN_RS16715	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
THSYN_RS16715	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
THSYN_RS16810	PWY-4983	L-citrulline-nitric oxide cycle
THSYN_RS16810	PWY-4984	urea cycle
THSYN_RS16810	PWY-5	canavanine biosynthesis
THSYN_RS16810	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS16810	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THSYN_RS16845	PWY-2201	folate transformations I
THSYN_RS16870	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
THSYN_RS16900	PWY-5386	methylglyoxal degradation I
THSYN_RS16970	PWY-2722	trehalose degradation IV
THSYN_RS16970	PWY-2723	trehalose degradation V
THSYN_RS16970	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THSYN_RS16970	PWY-5661	GDP-glucose biosynthesis
THSYN_RS16970	PWY-621	sucrose degradation III (sucrose invertase)
THSYN_RS16970	PWY-7238	sucrose biosynthesis II
THSYN_RS16970	PWY-7385	1,3-propanediol biosynthesis (engineered)
THSYN_RS17100	PWY-4081	glutathione redox reactions I
THSYN_RS17200	PWY-6605	adenine and adenosine salvage II
THSYN_RS17200	PWY-6610	adenine and adenosine salvage IV
THSYN_RS17200	PWY-7805	THSYN_RS17200
THSYN_RS17200	PWY-7807	THSYN_RS17200
THSYN_RS17390	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
THSYN_RS17390	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
THSYN_RS17390	PWY-6269	adenosylcobalamin salvage from cobinamide II
THSYN_RS17430	PWY-5194	siroheme biosynthesis
THSYN_RS17430	PWY-5196	factor 430 biosynthesis
THSYN_RS17430	PWY-5441	S-methyl-L-methionine cycle
THSYN_RS17430	PWY-702	L-methionine biosynthesis II
THSYN_RS17430	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
THSYN_RS17520	PWY-5723	Rubisco shunt
THSYN_RS17815	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THSYN_RS17815	PWY-6148	tetrahydromethanopterin biosynthesis
THSYN_RS17815	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
THSYN_RS17815	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
THSYN_RS17815	PWY-7852	THSYN_RS17815
THSYN_RS17815	PWY-7853	THSYN_RS17815
THSYN_RS17820	PWY-6654	phosphopantothenate biosynthesis III
THSYN_RS17830	PWY-5155	&beta;-alanine biosynthesis III
THSYN_RS18520	PWY-3821	galactose degradation III
THSYN_RS18520	PWY-6317	galactose degradation I (Leloir pathway)
THSYN_RS18520	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
THSYN_RS18520	PWY-6527	stachyose degradation
THSYN_RS18520	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
THSYN_RS18520	PWY-7344	UDP-D-galactose biosynthesis
THSYN_RS18575	PWY-5269	cardiolipin biosynthesis II
THSYN_RS18575	PWY-5668	cardiolipin biosynthesis I
THSYN_RS18575	PWY-7817	THSYN_RS18575
THSYN_RS18800	PWY-5532	adenosine nucleotides degradation IV
THSYN_RS18800	PWY-5723	Rubisco shunt
THSYN_RS19065	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
THSYN_RS19380	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
THSYN_RS19380	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
THSYN_RS19540	PWY-1281	sulfoacetaldehyde degradation I
THSYN_RS19540	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
THSYN_RS19540	PWY-5482	pyruvate fermentation to acetate II
THSYN_RS19540	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS19540	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS19540	PWY-6637	sulfolactate degradation II
THSYN_RS19540	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
THSYN_RS19740	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THSYN_RS19775	PWY-7851	THSYN_RS19775
THSYN_RS19795	PWY-6936	seleno-amino acid biosynthesis
THSYN_RS19900	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS19990	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS20290	PWY-6823	molybdenum cofactor biosynthesis
THSYN_RS20290	PWY-6891	thiazole biosynthesis II (Bacillus)
THSYN_RS20290	PWY-6892	thiazole biosynthesis I (E. coli)
THSYN_RS20290	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
THSYN_RS20365	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS20370	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS20380	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS20380	PWY-1622	formaldehyde assimilation I (serine pathway)
THSYN_RS20380	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THSYN_RS20380	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS20380	PWY-5723	Rubisco shunt
THSYN_RS20380	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS20380	PWY-6886	1-butanol autotrophic biosynthesis
THSYN_RS20380	PWY-6901	superpathway of glucose and xylose degradation
THSYN_RS20380	PWY-7003	glycerol degradation to butanol
THSYN_RS20380	PWY-7124	ethylene biosynthesis V (engineered)
THSYN_RS20380	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THSYN_RS20385	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THSYN_RS20385	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
THSYN_RS20390	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
THSYN_RS20390	PWY-7177	UTP and CTP dephosphorylation II
THSYN_RS20390	PWY-7185	UTP and CTP dephosphorylation I
THSYN_RS20540	PWY-6123	inosine-5'-phosphate biosynthesis I
THSYN_RS20540	PWY-7234	inosine-5'-phosphate biosynthesis III
THSYN_RS20550	PWY-6854	ethylene biosynthesis III (microbes)
THSYN_RS20610	PWY-6825	phosphatidylcholine biosynthesis V
THSYN_RS20695	PWY-7851	THSYN_RS20695
THSYN_RS20705	PWY-6749	CMP-legionaminate biosynthesis I
THSYN_RS20710	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS20710	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THSYN_RS20720	PWY-5686	UMP biosynthesis
THSYN_RS20720	PWY-7790	THSYN_RS20720
THSYN_RS20720	PWY-7791	THSYN_RS20720
THSYN_RS20755	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THSYN_RS20755	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THSYN_RS20755	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THSYN_RS20755	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THSYN_RS20755	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS20755	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS20755	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
THSYN_RS20755	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
THSYN_RS20810	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
THSYN_RS20820	PWY-3461	L-tyrosine biosynthesis II
THSYN_RS20820	PWY-3462	L-phenylalanine biosynthesis II
THSYN_RS20820	PWY-6120	L-tyrosine biosynthesis III
THSYN_RS20820	PWY-6627	salinosporamide A biosynthesis
THSYN_RS20820	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
THSYN_RS20820	PWY-7626	bacilysin biosynthesis
THSYN_RS20990	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
THSYN_RS20990	PWY-5368	dimorphecolate biosynthesis
THSYN_RS20990	PWY-5995	linoleate biosynthesis I (plants)
THSYN_RS20990	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
THSYN_RS20990	PWY-6803	phosphatidylcholine acyl editing
THSYN_RS20990	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
THSYN_RS20990	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
THSYN_RS20990	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
THSYN_RS20990	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
THSYN_RS20990	PWY-7470	phosphatidylcholine biosynthesis VII
THSYN_RS20990	PWY-7618	ricinoleate biosynthesis
THSYN_RS21060	PWY-6788	cellulose degradation II (fungi)
THSYN_RS21140	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
THSYN_RS21140	PWY-6167	flavin biosynthesis II (archaea)
THSYN_RS21140	PWY-6168	flavin biosynthesis III (fungi)
THSYN_RS21140	PWY-7863	THSYN_RS21140
THSYN_RS21150	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS21150	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS21390	PWY-5941	glycogen degradation II (eukaryotic)
THSYN_RS21390	PWY-6731	starch degradation III
THSYN_RS21390	PWY-6737	starch degradation V
THSYN_RS21390	PWY-7238	sucrose biosynthesis II
THSYN_RS21515	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THSYN_RS21515	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THSYN_RS21630	PWY-6938	NADH repair
THSYN_RS21635	PWY-622	starch biosynthesis
THSYN_RS21720	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THSYN_RS21795	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THSYN_RS21795	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THSYN_RS21795	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THSYN_RS21795	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THSYN_RS21795	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS21795	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS21795	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
THSYN_RS21795	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
THSYN_RS21815	PWY-5269	cardiolipin biosynthesis II
THSYN_RS21815	PWY-5668	cardiolipin biosynthesis I
THSYN_RS21815	PWY-7817	THSYN_RS21815
THSYN_RS21955	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THSYN_RS21955	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THSYN_RS21975	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
THSYN_RS21975	PWY-622	starch biosynthesis
THSYN_RS21985	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THSYN_RS21985	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THSYN_RS21985	PWY-5989	stearate biosynthesis II (bacteria and plants)
THSYN_RS21985	PWY-5994	palmitate biosynthesis I (animals and fungi)
THSYN_RS21985	PWY-6113	superpathway of mycolate biosynthesis
THSYN_RS21985	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THSYN_RS21985	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THSYN_RS21985	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THSYN_RS21985	PWY-7663	gondoate biosynthesis (anaerobic)
THSYN_RS21985	PWY-7664	oleate biosynthesis IV (anaerobic)
THSYN_RS21985	PWY-7858	THSYN_RS21985
THSYN_RS21985	PWYG-321	mycolate biosynthesis
THSYN_RS22010	PWY-7294	xylose degradation IV
THSYN_RS22010	PWY-7295	L-arabinose degradation IV
THSYN_RS22010	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS22015	PWY-5667	CDP-diacylglycerol biosynthesis I
THSYN_RS22015	PWY-5981	CDP-diacylglycerol biosynthesis III
THSYN_RS22015	PWY-7817	THSYN_RS22015
THSYN_RS22045	PWY-7799	THSYN_RS22045
THSYN_RS22045	PWY-7800	THSYN_RS22045
THSYN_RS22075	PWY-3801	sucrose degradation II (sucrose synthase)
THSYN_RS22075	PWY-6527	stachyose degradation
THSYN_RS22075	PWY-7238	sucrose biosynthesis II
THSYN_RS22075	PWY-7343	UDP-glucose biosynthesis
THSYN_RS22075	PWY-7817	THSYN_RS22075
THSYN_RS22080	PWY-5686	UMP biosynthesis
THSYN_RS22080	PWY-7790	THSYN_RS22080
THSYN_RS22080	PWY-7791	THSYN_RS22080
THSYN_RS22225	PWY-7039	phosphatidate metabolism, as a signaling molecule
THSYN_RS22225	PWY-7817	THSYN_RS22225
THSYN_RS22235	PWY-6823	molybdenum cofactor biosynthesis
THSYN_RS22275	PWY-6453	stigma estolide biosynthesis
THSYN_RS22275	PWY-7782	THSYN_RS22275
THSYN_RS22285	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THSYN_RS22285	PWY-5723	Rubisco shunt
THSYN_RS22290	PWY-181	photorespiration
THSYN_RS22295	PWY-5958	acridone alkaloid biosynthesis
THSYN_RS22295	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
THSYN_RS22295	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
THSYN_RS22425	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS22425	PWY-5686	UMP biosynthesis
THSYN_RS22425	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THSYN_RS22425	PWY-7790	THSYN_RS22425
THSYN_RS22425	PWY-7791	THSYN_RS22425
THSYN_RS22435	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THSYN_RS22435	PWY-5686	UMP biosynthesis
THSYN_RS22435	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THSYN_RS22435	PWY-7790	THSYN_RS22435
THSYN_RS22435	PWY-7791	THSYN_RS22435
THSYN_RS22600	PWY-5663	tetrahydrobiopterin biosynthesis I
THSYN_RS22600	PWY-5664	tetrahydrobiopterin biosynthesis II
THSYN_RS22600	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THSYN_RS22600	PWY-6703	preQ<sub>0</sub> biosynthesis
THSYN_RS22600	PWY-6983	tetrahydrobiopterin biosynthesis III
THSYN_RS22600	PWY-7442	drosopterin and aurodrosopterin biosynthesis
THSYN_RS22600	PWY-7852	THSYN_RS22600
THSYN_RS22695	PWY-5306	superpathway of thiosulfate metabolism (<i>Desulfovibrio sulfodismutans</i>)
THSYN_RS22695	PWY-5360	superpathway of tetrathionate reduction (<i>Salmonella typhimurium</i>)
THSYN_RS22695	PWY-6683	sulfate reduction III (assimilatory)
THSYN_RS22700	PWY-6683	sulfate reduction III (assimilatory)
THSYN_RS22785	PWY-3821	galactose degradation III
THSYN_RS22785	PWY-6317	galactose degradation I (Leloir pathway)
THSYN_RS22785	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
THSYN_RS22785	PWY-6527	stachyose degradation
THSYN_RS22785	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
THSYN_RS22785	PWY-7344	UDP-D-galactose biosynthesis
THSYN_RS22820	PWY-5382	hydrogen oxidation II (aerobic, NAD)
THSYN_RS22820	PWY-6758	hydrogen production II
THSYN_RS22865	PWY-3341	L-proline biosynthesis III
THSYN_RS22865	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
THSYN_RS22875	PWY-6854	ethylene biosynthesis III (microbes)
THSYN_RS22920	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THSYN_RS23100	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
THSYN_RS23110	PWY-4381	fatty acid biosynthesis initiation I
THSYN_RS23120	PWY-4381	fatty acid biosynthesis initiation I
THSYN_RS23175	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
THSYN_RS23175	PWY-5901	2,3-dihydroxybenzoate biosynthesis
THSYN_RS23175	PWY-6406	salicylate biosynthesis I
THSYN_RS23180	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
THSYN_RS23185	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
THSYN_RS23190	PWY-5839	menaquinol-7 biosynthesis
THSYN_RS23190	PWY-5851	demethylmenaquinol-9 biosynthesis
THSYN_RS23190	PWY-5852	demethylmenaquinol-8 biosynthesis I
THSYN_RS23190	PWY-5853	demethylmenaquinol-6 biosynthesis I
THSYN_RS23190	PWY-5890	menaquinol-10 biosynthesis
THSYN_RS23190	PWY-5891	menaquinol-11 biosynthesis
THSYN_RS23190	PWY-5892	menaquinol-12 biosynthesis
THSYN_RS23190	PWY-5895	menaquinol-13 biosynthesis
THSYN_RS23195	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS23195	PWY-1622	formaldehyde assimilation I (serine pathway)
THSYN_RS23195	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THSYN_RS23195	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS23195	PWY-5723	Rubisco shunt
THSYN_RS23195	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS23195	PWY-6886	1-butanol autotrophic biosynthesis
THSYN_RS23195	PWY-6901	superpathway of glucose and xylose degradation
THSYN_RS23195	PWY-7003	glycerol degradation to butanol
THSYN_RS23195	PWY-7124	ethylene biosynthesis V (engineered)
THSYN_RS23195	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THSYN_RS23250	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS23310	PWY-5451	acetone degradation I (to methylglyoxal)
THSYN_RS23310	PWY-6588	pyruvate fermentation to acetone
THSYN_RS23310	PWY-6876	isopropanol biosynthesis
THSYN_RS23310	PWY-7466	acetone degradation III (to propane-1,2-diol)
THSYN_RS23370	PWY-6840	homoglutathione biosynthesis
THSYN_RS23370	PWY-7255	ergothioneine biosynthesis I (bacteria)
THSYN_RS23430	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
THSYN_RS23430	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
THSYN_RS23445	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THSYN_RS23445	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THSYN_RS23490	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
THSYN_RS23560	PWY-6832	2-aminoethylphosphonate degradation II
THSYN_RS23675	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
THSYN_RS23675	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
THSYN_RS23675	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
THSYN_RS23675	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
THSYN_RS23675	PWY-6978	plastoquinol-9 biosynthesis II
THSYN_RS23705	PWY-6871	3-methylbutanol biosynthesis
THSYN_RS23720	PWY-7793	THSYN_RS23720
THSYN_RS24080	PWY-6700	queuosine biosynthesis
THSYN_RS24085	PWY-5386	methylglyoxal degradation I
THSYN_RS24180	PWY-1622	formaldehyde assimilation I (serine pathway)
THSYN_RS24180	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
THSYN_RS24180	PWY-5913	TCA cycle VI (obligate autotrophs)
THSYN_RS24180	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS24180	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
THSYN_RS24180	PWY-6549	L-glutamine biosynthesis III
THSYN_RS24180	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
THSYN_RS24180	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
THSYN_RS24180	PWY-7124	ethylene biosynthesis V (engineered)
THSYN_RS24385	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
THSYN_RS24475	PWY-3341	L-proline biosynthesis III
THSYN_RS24475	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
THSYN_RS24520	PWY-5392	reductive TCA cycle II
THSYN_RS24520	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THSYN_RS24520	PWY-5690	TCA cycle II (plants and fungi)
THSYN_RS24520	PWY-5913	TCA cycle VI (obligate autotrophs)
THSYN_RS24520	PWY-6728	methylaspartate cycle
THSYN_RS24520	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS24520	PWY-7254	TCA cycle VII (acetate-producers)
THSYN_RS24520	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
THSYN_RS24565	PWY-2941	L-lysine biosynthesis II
THSYN_RS24565	PWY-2942	L-lysine biosynthesis III
THSYN_RS24565	PWY-5097	L-lysine biosynthesis VI
THSYN_RS24580	PWY-3781	aerobic respiration I (cytochrome c)
THSYN_RS24580	PWY-4302	aerobic respiration III (alternative oxidase pathway)
THSYN_RS24580	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
THSYN_RS24580	PWY-6692	Fe(II) oxidation
THSYN_RS24655	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS24655	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS24655	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS24655	PWY-7003	glycerol degradation to butanol
THSYN_RS24795	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THSYN_RS24895	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS24920	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THSYN_RS24925	PWY-3341	L-proline biosynthesis III
THSYN_RS24925	PWY-4981	L-proline biosynthesis II (from arginine)
THSYN_RS24925	PWY-6344	L-ornithine degradation II (Stickland reaction)
THSYN_RS24935	PWY-1281	sulfoacetaldehyde degradation I
THSYN_RS24935	PWY-5482	pyruvate fermentation to acetate II
THSYN_RS24935	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS24935	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS24935	PWY-6637	sulfolactate degradation II
THSYN_RS24990	PWY-7651	heparan sulfate degradation
THSYN_RS25140	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
THSYN_RS25140	PWY-7688	THSYN_RS25140
THSYN_RS25270	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
THSYN_RS25270	PWY-5739	GDP-D-perosamine biosynthesis
THSYN_RS25270	PWY-5740	GDP-L-colitose biosynthesis
THSYN_RS25270	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
THSYN_RS25270	PWY-7573	GDP-mycosamine biosynthesis
THSYN_RS25425	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THSYN_RS25425	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THSYN_RS25425	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THSYN_RS25785	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THSYN_RS25790	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THSYN_RS25790	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
THSYN_RS25810	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS25860	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THSYN_RS25860	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THSYN_RS25900	PWY-5103	L-isoleucine biosynthesis III
THSYN_RS25900	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THSYN_RS25905	PWY-5101	L-isoleucine biosynthesis II
THSYN_RS25905	PWY-5103	L-isoleucine biosynthesis III
THSYN_RS25905	PWY-5104	L-isoleucine biosynthesis IV
THSYN_RS25905	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
THSYN_RS25905	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
THSYN_RS25905	PWY-6389	(<i>S</i>)-acetoin biosynthesis
THSYN_RS25905	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THSYN_RS25910	PWY-5101	L-isoleucine biosynthesis II
THSYN_RS25910	PWY-5103	L-isoleucine biosynthesis III
THSYN_RS25910	PWY-5104	L-isoleucine biosynthesis IV
THSYN_RS25910	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
THSYN_RS25910	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
THSYN_RS25910	PWY-6389	(<i>S</i>)-acetoin biosynthesis
THSYN_RS25910	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THSYN_RS25925	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THSYN_RS25925	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THSYN_RS25925	PWY-5989	stearate biosynthesis II (bacteria and plants)
THSYN_RS25925	PWY-5994	palmitate biosynthesis I (animals and fungi)
THSYN_RS25925	PWY-6113	superpathway of mycolate biosynthesis
THSYN_RS25925	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THSYN_RS25925	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THSYN_RS25925	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THSYN_RS25925	PWY-7663	gondoate biosynthesis (anaerobic)
THSYN_RS25925	PWY-7664	oleate biosynthesis IV (anaerobic)
THSYN_RS25925	PWY-7858	THSYN_RS25925
THSYN_RS25925	PWYG-321	mycolate biosynthesis
THSYN_RS25960	PWY-7731	THSYN_RS25960
THSYN_RS25970	PWY-5269	cardiolipin biosynthesis II
THSYN_RS25970	PWY-5668	cardiolipin biosynthesis I
THSYN_RS25970	PWY-7817	THSYN_RS25970
THSYN_RS25975	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THSYN_RS25975	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THSYN_RS25975	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THSYN_RS25980	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THSYN_RS25980	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
THSYN_RS26080	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
THSYN_RS26080	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THSYN_RS26080	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
THSYN_RS26130	PWY-6749	CMP-legionaminate biosynthesis I
THSYN_RS26135	PWY-6614	tetrahydrofolate biosynthesis
THSYN_RS26210	PWY-6349	CDP-archaeol biosynthesis
THSYN_RS26255	PWY-6167	flavin biosynthesis II (archaea)
THSYN_RS26255	PWY-6168	flavin biosynthesis III (fungi)
THSYN_RS26255	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
THSYN_RS26260	PWY-6167	flavin biosynthesis II (archaea)
THSYN_RS26260	PWY-6168	flavin biosynthesis III (fungi)
THSYN_RS26435	PWY-6834	spermidine biosynthesis III
THSYN_RS26475	PWY-5958	acridone alkaloid biosynthesis
THSYN_RS26475	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
THSYN_RS26475	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
THSYN_RS26575	PWY-6823	molybdenum cofactor biosynthesis
THSYN_RS26575	PWY-6891	thiazole biosynthesis II (Bacillus)
THSYN_RS26575	PWY-6892	thiazole biosynthesis I (E. coli)
THSYN_RS26575	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
THSYN_RS26585	PWY-6936	seleno-amino acid biosynthesis
THSYN_RS26585	PWY-7274	D-cycloserine biosynthesis
THSYN_RS26590	PWY-6004	glycine betaine biosynthesis V (from glycine)
THSYN_RS26595	PWY-2301	<i>myo</i>-inositol biosynthesis
THSYN_RS26595	PWY-4702	phytate degradation I
THSYN_RS26595	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
THSYN_RS26625	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
THSYN_RS26625	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
THSYN_RS26625	PWY-6896	thiamin salvage I
THSYN_RS26625	PWY-6897	thiamin salvage II
THSYN_RS26805	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
THSYN_RS26805	PWY-5940	streptomycin biosynthesis
THSYN_RS26810	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
THSYN_RS27045	PWY-7805	THSYN_RS27045
THSYN_RS27045	PWY-7807	THSYN_RS27045
THSYN_RS27130	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
THSYN_RS27130	PWY-2201	folate transformations I
THSYN_RS27130	PWY-3841	folate transformations II
THSYN_RS27130	PWY-5030	L-histidine degradation III
THSYN_RS27130	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS27130	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
THSYN_RS27135	PWY-5392	reductive TCA cycle II
THSYN_RS27135	PWY-5537	pyruvate fermentation to acetate V
THSYN_RS27135	PWY-5538	pyruvate fermentation to acetate VI
THSYN_RS27135	PWY-5690	TCA cycle II (plants and fungi)
THSYN_RS27135	PWY-5913	TCA cycle VI (obligate autotrophs)
THSYN_RS27135	PWY-6728	methylaspartate cycle
THSYN_RS27135	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THSYN_RS27135	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
THSYN_RS27180	PWY-7052	cyanophycin metabolism
THSYN_RS27300	PWY-6829	tRNA methylation (yeast)
THSYN_RS27300	PWY-7285	methylwyosine biosynthesis
THSYN_RS27300	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
THSYN_RS27320	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS27320	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS27390	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
THSYN_RS27630	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THSYN_RS27640	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS27660	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
THSYN_RS27870	PWY-6683	sulfate reduction III (assimilatory)
THSYN_RS27875	PWY-6683	sulfate reduction III (assimilatory)
THSYN_RS28010	PWY-2941	L-lysine biosynthesis II
THSYN_RS28010	PWY-2942	L-lysine biosynthesis III
THSYN_RS28010	PWY-5097	L-lysine biosynthesis VI
THSYN_RS28010	PWY-6559	spermidine biosynthesis II
THSYN_RS28010	PWY-6562	norspermidine biosynthesis
THSYN_RS28010	PWY-7153	grixazone biosynthesis
THSYN_RS28065	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
THSYN_RS28065	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
THSYN_RS28065	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
THSYN_RS28065	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
THSYN_RS28065	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
THSYN_RS28065	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
THSYN_RS28065	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
THSYN_RS28065	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
THSYN_RS28065	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
THSYN_RS28065	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
THSYN_RS28115	PWY-5132	humulone biosynthesis
THSYN_RS28115	PWY-5133	cohumulone biosynthesis
THSYN_RS28115	PWY-6672	<i>cis</i>-genanyl-CoA degradation
THSYN_RS28115	PWY-7118	chitin degradation to ethanol
THSYN_RS28115	PWY-7857	THSYN_RS28115
THSYN_RS28140	PWY-7851	THSYN_RS28140
THSYN_RS28145	PWY-5101	L-isoleucine biosynthesis II
THSYN_RS28145	PWY-5103	L-isoleucine biosynthesis III
THSYN_RS28145	PWY-5104	L-isoleucine biosynthesis IV
THSYN_RS28145	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
THSYN_RS28145	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
THSYN_RS28145	PWY-6389	(<i>S</i>)-acetoin biosynthesis
THSYN_RS28145	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THSYN_RS28205	PWY-3841	folate transformations II
THSYN_RS28205	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THSYN_RS28205	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
THSYN_RS28205	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THSYN_RS28205	PWY-7199	pyrimidine deoxyribonucleosides salvage
THSYN_RS28205	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THSYN_RS28210	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS28210	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THSYN_RS28210	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS28210	PWY-5723	Rubisco shunt
THSYN_RS28210	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS28210	PWY-6886	1-butanol autotrophic biosynthesis
THSYN_RS28210	PWY-6901	superpathway of glucose and xylose degradation
THSYN_RS28210	PWY-7003	glycerol degradation to butanol
THSYN_RS28210	PWY-7124	ethylene biosynthesis V (engineered)
THSYN_RS28210	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THSYN_RS28215	PWY-622	starch biosynthesis
THSYN_RS28375	PWY-5663	tetrahydrobiopterin biosynthesis I
THSYN_RS28375	PWY-5664	tetrahydrobiopterin biosynthesis II
THSYN_RS28375	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THSYN_RS28375	PWY-6703	preQ<sub>0</sub> biosynthesis
THSYN_RS28375	PWY-6983	tetrahydrobiopterin biosynthesis III
THSYN_RS28375	PWY-7442	drosopterin and aurodrosopterin biosynthesis
THSYN_RS28375	PWY-7852	THSYN_RS28375
THSYN_RS28385	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THSYN_RS28385	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THSYN_RS28385	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THSYN_RS28425	PWY-5669	phosphatidylethanolamine biosynthesis I
THSYN_RS28565	PWY-6700	queuosine biosynthesis
THSYN_RS28660	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
THSYN_RS28665	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
THSYN_RS28690	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THSYN_RS28690	PWY-6855	chitin degradation I (archaea)
THSYN_RS28690	PWY-6906	chitin derivatives degradation
THSYN_RS28750	PWY-6823	molybdenum cofactor biosynthesis
THSYN_RS28845	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THSYN_RS28845	PWY-6416	quinate degradation II
THSYN_RS28845	PWY-6707	gallate biosynthesis
THSYN_RS28970	PWY-5481	pyruvate fermentation to lactate
THSYN_RS28970	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
THSYN_RS28970	PWY-6901	superpathway of glucose and xylose degradation
THSYN_RS28975	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
THSYN_RS28975	PWY-5739	GDP-D-perosamine biosynthesis
THSYN_RS28975	PWY-5740	GDP-L-colitose biosynthesis
THSYN_RS28975	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
THSYN_RS28975	PWY-7573	GDP-mycosamine biosynthesis
THSYN_RS29095	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
THSYN_RS29095	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
THSYN_RS29110	PWY-6749	CMP-legionaminate biosynthesis I
THSYN_RS29115	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THSYN_RS29115	PWY-5667	CDP-diacylglycerol biosynthesis I
THSYN_RS29115	PWY-6453	stigma estolide biosynthesis
THSYN_RS29115	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
THSYN_RS29115	PWY-7587	oleate biosynthesis III (cyanobacteria)
THSYN_RS29140	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS29140	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS29155	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS29165	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THSYN_RS29485	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS29485	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS29485	PWY-7766	THSYN_RS29485
THSYN_RS29705	PWY-5532	adenosine nucleotides degradation IV
THSYN_RS29705	PWY-5723	Rubisco shunt
THSYN_RS29710	PWY-5532	adenosine nucleotides degradation IV
THSYN_RS29710	PWY-5723	Rubisco shunt
THSYN_RS29750	PWY-7158	L-phenylalanine degradation V
THSYN_RS29870	PWY-1281	sulfoacetaldehyde degradation I
THSYN_RS29870	PWY-5482	pyruvate fermentation to acetate II
THSYN_RS29870	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS29870	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS29870	PWY-6637	sulfolactate degradation II
THSYN_RS30625	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
THSYN_RS30625	PWY-581	indole-3-acetate biosynthesis II
THSYN_RS30625	PWY-7308	acrylonitrile degradation I
THSYN_RS30875	PWY-6803	phosphatidylcholine acyl editing
THSYN_RS30875	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
THSYN_RS30875	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
THSYN_RS30875	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
THSYN_RS30875	PWY-7783	THSYN_RS30875
THSYN_RS30985	PWY-1042	glycolysis IV (plant cytosol)
THSYN_RS30985	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THSYN_RS30985	PWY-5484	glycolysis II (from fructose 6-phosphate)
THSYN_RS30985	PWY-5723	Rubisco shunt
THSYN_RS30985	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THSYN_RS30985	PWY-6886	1-butanol autotrophic biosynthesis
THSYN_RS30985	PWY-6901	superpathway of glucose and xylose degradation
THSYN_RS30985	PWY-7003	glycerol degradation to butanol
THSYN_RS30985	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THSYN_RS30985	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THSYN_RS30995	PWY-40	putrescine biosynthesis I
THSYN_RS30995	PWY-43	putrescine biosynthesis II
THSYN_RS30995	PWY-6305	putrescine biosynthesis IV
THSYN_RS30995	PWY-6834	spermidine biosynthesis III
THSYN_RS31000	PWY-40	putrescine biosynthesis I
THSYN_RS31000	PWY-6305	putrescine biosynthesis IV
THSYN_RS31005	PWY-1281	sulfoacetaldehyde degradation I
THSYN_RS31005	PWY-5482	pyruvate fermentation to acetate II
THSYN_RS31005	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS31005	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS31005	PWY-6637	sulfolactate degradation II
THSYN_RS31010	PWY-5482	pyruvate fermentation to acetate II
THSYN_RS31010	PWY-5485	pyruvate fermentation to acetate IV
THSYN_RS31010	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS31015	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THSYN_RS31015	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THSYN_RS31015	PWY-5989	stearate biosynthesis II (bacteria and plants)
THSYN_RS31015	PWY-6113	superpathway of mycolate biosynthesis
THSYN_RS31015	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THSYN_RS31015	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THSYN_RS31015	PWY-7663	gondoate biosynthesis (anaerobic)
THSYN_RS31015	PWY-7664	oleate biosynthesis IV (anaerobic)
THSYN_RS31015	PWY-7858	THSYN_RS31015
THSYN_RS31015	PWYG-321	mycolate biosynthesis
THSYN_RS31280	PWY-6891	thiazole biosynthesis II (Bacillus)
THSYN_RS31280	PWY-6892	thiazole biosynthesis I (E. coli)
THSYN_RS31280	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS31355	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS31355	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS31360	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS31360	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS31380	PWY-101	photosynthesis light reactions
THSYN_RS31385	PWY-101	photosynthesis light reactions
THSYN_RS31405	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
THSYN_RS31405	PWY-6174	mevalonate pathway II (archaea)
THSYN_RS31405	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
THSYN_RS31405	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
THSYN_RS31405	PWY-7102	bisabolene biosynthesis
THSYN_RS31405	PWY-7391	isoprene biosynthesis II (engineered)
THSYN_RS31405	PWY-7524	mevalonate pathway III (archaea)
THSYN_RS31405	PWY-7560	methylerythritol phosphate pathway II
THSYN_RS31405	PWY-922	mevalonate pathway I
THSYN_RS31415	PWY-5532	adenosine nucleotides degradation IV
THSYN_RS31415	PWY-5723	Rubisco shunt
THSYN_RS31675	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS31675	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS31680	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS31680	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS31685	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS31685	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS31690	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS31690	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS31695	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS31695	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS31840	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
THSYN_RS31840	PWY-7784	THSYN_RS31840
THSYN_RS31955	PWY-5964	guanylyl molybdenum cofactor biosynthesis
THSYN_RS31955	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
THSYN_RS31960	PWY-7158	L-phenylalanine degradation V
THSYN_RS32005	PWY-5958	acridone alkaloid biosynthesis
THSYN_RS32005	PWY-6543	4-aminobenzoate biosynthesis
THSYN_RS32005	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
THSYN_RS32005	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
THSYN_RS32015	PWY-5254	methanofuran biosynthesis
THSYN_RS32025	PWY-1723	formaldehyde oxidation V (H<sub>4</sub>MPT pathway)
THSYN_RS32025	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THSYN_RS32025	PWY-7796	THSYN_RS32025
THSYN_RS32030	PWY-5796	malonate decarboxylase activation
THSYN_RS32040	PWY-1723	formaldehyde oxidation V (H<sub>4</sub>MPT pathway)
THSYN_RS32040	PWY-7784	THSYN_RS32040
THSYN_RS32055	PWY-6148	tetrahydromethanopterin biosynthesis
THSYN_RS32130	PWY-5278	sulfite oxidation III
THSYN_RS32130	PWY-5340	sulfate activation for sulfonation
THSYN_RS32130	PWY-6683	sulfate reduction III (assimilatory)
THSYN_RS32130	PWY-6932	selenate reduction
THSYN_RS32135	PWY-5278	sulfite oxidation III
THSYN_RS32135	PWY-5340	sulfate activation for sulfonation
THSYN_RS32135	PWY-6683	sulfate reduction III (assimilatory)
THSYN_RS32135	PWY-6932	selenate reduction
THSYN_RS32165	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
THSYN_RS32175	PWY-2201	folate transformations I
THSYN_RS32175	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
THSYN_RS32180	PWY-2201	folate transformations I
THSYN_RS32180	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
THSYN_RS32190	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
THSYN_RS32195	PWY-5194	siroheme biosynthesis
THSYN_RS32195	PWY-5196	factor 430 biosynthesis
THSYN_RS32195	PWY-5441	S-methyl-L-methionine cycle
THSYN_RS32195	PWY-702	L-methionine biosynthesis II
THSYN_RS32195	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
THSYN_RS32315	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
THSYN_RS32315	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
THSYN_RS32320	PWY-5443	aminopropanol phosphate biosynthesis I
THSYN_RS32540	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS32540	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS32550	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THSYN_RS32550	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THSYN_RS32640	PWY-6420	pyrroloquinoline quinone biosynthesis
THSYN_RS33050	PWY-1723	formaldehyde oxidation V (H<sub>4</sub>MPT pathway)
THSYN_RS33050	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THSYN_RS33050	PWY-7796	THSYN_RS33050
THSYN_RS33185	PWY-1881	formate oxidation to CO<sub>2</sub>
THSYN_RS33185	PWY-5497	purine nucleobases degradation II (anaerobic)
THSYN_RS33185	PWY-6696	oxalate degradation III
THSYN_RS33215	PWY-3041	monoterpene biosynthesis
THSYN_RS33215	PWY-5254	methanofuran biosynthesis
THSYN_RS33215	PWY-5423	oleoresin monoterpene volatiles biosynthesis
THSYN_RS33215	PWY-7410	ipsdienol biosynthesis
