locus-tag class description CCNA_00001 PF03618 Kinase/pyrophosphorylase CCNA_00002 PF02545 Maf-like protein CCNA_00003 PF08501 Shikimate dehydrogenase substrate binding domain CCNA_00003 PF01488 Shikimate / quinate 5-dehydrogenase CCNA_00004 PF01121 Dephospho-CoA kinase CCNA_00005 PF00929 Exonuclease CCNA_00006 PF00378 Enoyl-CoA hydratase/isomerase CCNA_00007 PF01649 Ribosomal protein S20 CCNA_00008 PF08299 Bacterial dnaA protein helix-turn-helix CCNA_00008 PF11638 DnaA N-terminal domain CCNA_00008 PF00308 Bacterial dnaA protein CCNA_00009 PF13532 2OG-Fe(II) oxygenase superfamily CCNA_00010 PF00012 Hsp70 protein CCNA_00011 PF01556 DnaJ C terminal domain CCNA_00011 PF00684 DnaJ central domain CCNA_00011 PF00226 DnaJ domain CCNA_00012 PF05188 MutS domain II CCNA_00012 PF05192 MutS domain III CCNA_00012 PF00488 MutS domain V CCNA_00012 PF05190 MutS family domain IV CCNA_00012 PF01624 MutS domain I CCNA_00013 PF01966 HD domain CCNA_00013 PF08335 GlnD PII-uridylyltransferase CCNA_00014 PF01967 MoaC family CCNA_00015 PF00994 Probable molybdopterin binding domain CCNA_00016 PF02391 MoaE protein CCNA_00018 PF06463 Molybdenum Cofactor Synthesis C CCNA_00018 PF04055 Radical SAM superfamily CCNA_00019 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CCNA_00021 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CCNA_00022 PF00111 2Fe-2S iron-sulfur cluster binding domain CCNA_00022 PF01799 [2Fe-2S] binding domain CCNA_00024 PF10414 Sirohaem synthase dimerisation region CCNA_00024 PF14824 Sirohaem biosynthesis protein central CCNA_00024 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CCNA_00025 PF00083 Sugar (and other) transporter CCNA_00025 PF00083 Sugar (and other) transporter CCNA_00026 PF01627 Hpt domain CCNA_00026 PF18415 Histidine kinase receptor ArcB trans-membrane domain CCNA_00026 PF00072 Response regulator receiver domain CCNA_00026 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00026 PF00989 PAS fold CCNA_00026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00027 PF18331 PKHD-type hydroxylase C-terminal domain CCNA_00027 PF13640 2OG-Fe(II) oxygenase superfamily CCNA_00028 PF07715 TonB-dependent Receptor Plug Domain CCNA_00028 PF00593 TonB dependent receptor CCNA_00029 PF01810 LysE type translocator CCNA_00033 PF01138 3' exoribonuclease family, domain 1 CCNA_00033 PF00013 KH domain CCNA_00033 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CCNA_00033 PF03725 3' exoribonuclease family, domain 2 CCNA_00033 PF00575 S1 RNA binding domain CCNA_00034 PF00312 Ribosomal protein S15 CCNA_00035 PF16198 tRNA pseudouridylate synthase B C-terminal domain CCNA_00035 PF01509 TruB family pseudouridylate synthase (N terminal domain) CCNA_00036 PF02033 Ribosome-binding factor A CCNA_00041 PF00009 Elongation factor Tu GTP binding domain CCNA_00041 PF11987 Translation-initiation factor 2 CCNA_00041 PF08364 Bacterial translation initiation factor IF-2 associated region CCNA_00041 PF04760 Translation initiation factor IF-2, N-terminal region CCNA_00043 PF08529 NusA N-terminal domain CCNA_00043 PF00575 S1 RNA binding domain CCNA_00043 PF13184 NusA-like KH domain CCNA_00044 PF17384 RimP C-terminal SH3 domain CCNA_00044 PF02576 RimP N-terminal domain CCNA_00045 PF00719 Inorganic pyrophosphatase CCNA_00047 PF02390 Putative methyltransferase CCNA_00048 PF02772 S-adenosylmethionine synthetase, central domain CCNA_00048 PF00438 S-adenosylmethionine synthetase, N-terminal domain CCNA_00048 PF02773 S-adenosylmethionine synthetase, C-terminal domain CCNA_00049 PF01381 Helix-turn-helix CCNA_00050 PF00795 Carbon-nitrogen hydrolase CCNA_00051 PF00571 CBS domain CCNA_00051 PF03471 Transporter associated domain CCNA_00052 PF02130 Uncharacterized protein family UPF0054 CCNA_00053 PF02562 PhoH-like protein CCNA_00054 PF04055 Radical SAM superfamily CCNA_00054 PF00919 Uncharacterized protein family UPF0004 CCNA_00054 PF01938 TRAM domain CCNA_00055 PF01475 Ferric uptake regulator family CCNA_00056 PF00583 Acetyltransferase (GNAT) family CCNA_00057 PF00814 Glycoprotease family CCNA_00059 PF00881 Nitroreductase family CCNA_00060 PF01106 NifU-like domain CCNA_00061 PF00067 Cytochrome P450 CCNA_00062 PF00579 tRNA synthetases class I (W and Y) CCNA_00063 PF03023 Lipid II flippase MurJ CCNA_00064 PF02203 Tar ligand binding domain homologue CCNA_00064 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_00064 PF00672 HAMP domain CCNA_00068 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CCNA_00068 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CCNA_00069 PF00814 Glycoprotease family CCNA_00070 PF03900 Porphobilinogen deaminase, C-terminal domain CCNA_00070 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CCNA_00074 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CCNA_00074 PF00378 Enoyl-CoA hydratase/isomerase CCNA_00074 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CCNA_00075 PF00108 Thiolase, N-terminal domain CCNA_00075 PF02803 Thiolase, C-terminal domain CCNA_00077 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_00077 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_00077 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_00078 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_00078 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_00078 PF12806 Acetyl-CoA dehydrogenase C-terminal like CCNA_00078 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_00079 PF13411 MerR HTH family regulatory protein CCNA_00082 PF01921 tRNA synthetases class I (K) CCNA_00083 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CCNA_00083 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CCNA_00083 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CCNA_00083 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CCNA_00084 PF02142 MGS-like domain CCNA_00084 PF01808 AICARFT/IMPCHase bienzyme CCNA_00086 PF05088 Bacterial NAD-glutamate dehydrogenase CCNA_00087 PF01594 AI-2E family transporter CCNA_00088 PF05872 Bacterial protein of unknown function (DUF853) CCNA_00089 PF00563 EAL domain CCNA_00089 PF00990 Diguanylate cyclase, GGDEF domain CCNA_00089 PF03707 Bacterial signalling protein N terminal repeat CCNA_00089 PF13188 PAS domain CCNA_00090 PF16363 GDP-mannose 4,6 dehydratase CCNA_00091 PF00892 EamA-like transporter family CCNA_00094 PF03808 Glycosyl transferase WecB/TagA/CpsF family CCNA_00095 PF16197 Ketoacyl-synthetase C-terminal extension CCNA_00095 PF00550 Phosphopantetheine attachment site CCNA_00095 PF02801 Beta-ketoacyl synthase, C-terminal domain CCNA_00095 PF08659 KR domain CCNA_00095 PF14765 Polyketide synthase dehydratase CCNA_00095 PF00698 Acyl transferase domain CCNA_00095 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_00095 PF00109 Beta-ketoacyl synthase, N-terminal domain CCNA_00095 PF08990 Erythronolide synthase docking CCNA_00096 PF01112 Asparaginase CCNA_00099 PF07940 Heparinase II/III-like protein CCNA_00100 PF00834 Ribulose-phosphate 3 epimerase family CCNA_00101 PF01029 NusB family CCNA_00101 PF01189 16S rRNA methyltransferase RsmB/F CCNA_00104 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CCNA_00105 PF01914 MarC family integral membrane protein CCNA_00106 PF01494 FAD binding domain CCNA_00107 PF03966 Trm112p-like protein CCNA_00108 PF02190 ATP-dependent protease La (LON) substrate-binding domain CCNA_00108 PF05362 Lon protease (S16) C-terminal proteolytic domain CCNA_00108 PF00004 ATPase family associated with various cellular activities (AAA) CCNA_00109 PF00085 Thioredoxin CCNA_00115 PF01979 Amidohydrolase family CCNA_00116 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CCNA_00116 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CCNA_00116 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CCNA_00116 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CCNA_00117 PF01380 SIS domain CCNA_00119 PF01980 tRNA-methyltransferase O CCNA_00119 PF18389 TrmO C-terminal domain CCNA_00123 PF00106 short chain dehydrogenase CCNA_00125 PF01810 LysE type translocator CCNA_00128 PF00764 Arginosuccinate synthase CCNA_00130 PF02705 K+ potassium transporter CCNA_00132 PF00106 short chain dehydrogenase CCNA_00133 PF04055 Radical SAM superfamily CCNA_00136 PF07690 Major Facilitator Superfamily CCNA_00137 PF00672 HAMP domain CCNA_00137 PF17149 Periplasmic sensor domain found in signal transduction proteins CCNA_00137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00137 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00137 PF00072 Response regulator receiver domain CCNA_00137 PF01627 Hpt domain CCNA_00138 PF07715 TonB-dependent Receptor Plug Domain CCNA_00138 PF07660 Secretin and TonB N terminus short domain CCNA_00138 PF00593 TonB dependent receptor CCNA_00139 PF01078 Magnesium chelatase, subunit ChlI CCNA_00139 PF13335 Magnesium chelatase, subunit ChlI C-terminal CCNA_00140 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CCNA_00140 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CCNA_00142 PF02021 Uncharacterised protein family UPF0102 CCNA_00143 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CCNA_00144 PF04055 Radical SAM superfamily CCNA_00144 PF06969 HemN C-terminal domain CCNA_00145 PF01725 Ham1 family CCNA_00146 PF00043 Glutathione S-transferase, C-terminal domain CCNA_00146 PF13417 Glutathione S-transferase, N-terminal domain CCNA_00149 PF13443 Cro/C1-type HTH DNA-binding domain CCNA_00150 PF13180 PDZ domain CCNA_00151 PF01138 3' exoribonuclease family, domain 1 CCNA_00151 PF03725 3' exoribonuclease family, domain 2 CCNA_00152 PF01628 HrcA protein C terminal domain CCNA_00153 PF01025 GrpE CCNA_00155 PF02768 DNA polymerase III beta subunit, C-terminal domain CCNA_00155 PF02767 DNA polymerase III beta subunit, central domain CCNA_00155 PF00712 DNA polymerase III beta subunit, N-terminal domain CCNA_00158 PF02463 RecF/RecN/SMC N terminal domain CCNA_00159 PF01751 Toprim domain CCNA_00159 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00159 PF00986 DNA gyrase B subunit, carboxyl terminus CCNA_00159 PF00204 DNA gyrase B CCNA_00160 PF05227 CHASE3 domain CCNA_00160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_00160 PF00672 HAMP domain CCNA_00163 PF13807 G-rich domain on putative tyrosine kinase CCNA_00163 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CCNA_00163 PF02706 Chain length determinant protein CCNA_00165 PF02397 Bacterial sugar transferase CCNA_00172 PF03958 Bacterial type II/III secretion system short domain CCNA_00172 PF00263 Bacterial type II and III secretion system protein CCNA_00173 PF00437 Type II/IV secretion system protein CCNA_00174 PF00482 Type II secretion system (T2SS), protein F CCNA_00175 PF08334 Type II secretion system (T2SS), protein G CCNA_00175 PF07963 Prokaryotic N-terminal methylation motif CCNA_00176 PF12019 Type II transport protein GspH CCNA_00176 PF07963 Prokaryotic N-terminal methylation motif CCNA_00177 PF02501 Type II secretion system (T2SS), protein I CCNA_00177 PF07963 Prokaryotic N-terminal methylation motif CCNA_00178 PF11612 Type II secretion system (T2SS), protein J CCNA_00178 PF07963 Prokaryotic N-terminal methylation motif CCNA_00179 PF03934 Type II secretion system (T2SS), protein K CCNA_00183 PF06750 Bacterial Peptidase A24 N-terminal domain CCNA_00183 PF01478 Type IV leader peptidase family CCNA_00185 PF07715 TonB-dependent Receptor Plug Domain CCNA_00185 PF00593 TonB dependent receptor CCNA_00186 PF00860 Permease family CCNA_00188 PF00005 ABC transporter CCNA_00190 PF03061 Thioesterase superfamily CCNA_00192 PF13193 AMP-binding enzyme C-terminal domain CCNA_00192 PF00501 AMP-binding enzyme CCNA_00193 PF00180 Isocitrate/isopropylmalate dehydrogenase CCNA_00194 PF03992 Antibiotic biosynthesis monooxygenase CCNA_00195 PF00694 Aconitase C-terminal domain CCNA_00196 PF00330 Aconitase family (aconitate hydratase) CCNA_00197 PF01245 Ribosomal protein L19 CCNA_00198 PF01746 tRNA (Guanine-1)-methyltransferase CCNA_00201 PF05736 OprF membrane domain CCNA_00201 PF00691 OmpA family CCNA_00204 PF00999 Sodium/hydrogen exchanger family CCNA_00204 PF02254 TrkA-N domain CCNA_00205 PF02525 Flavodoxin-like fold CCNA_00206 PF01144 Coenzyme A transferase CCNA_00207 PF01144 Coenzyme A transferase CCNA_00209 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CCNA_00211 PF04371 Porphyromonas-type peptidyl-arginine deiminase CCNA_00212 PF00795 Carbon-nitrogen hydrolase CCNA_00214 PF00593 TonB dependent receptor CCNA_00214 PF07715 TonB-dependent Receptor Plug Domain CCNA_00217 PF13098 Thioredoxin-like domain CCNA_00217 PF11412 Disulphide bond corrector protein DsbC CCNA_00217 PF02683 Cytochrome C biogenesis protein transmembrane region CCNA_00222 PF00342 Phosphoglucose isomerase CCNA_00223 PF00561 alpha/beta hydrolase fold CCNA_00226 PF09857 Putative toxin of bacterial toxin-antitoxin pair CCNA_00228 PF06736 Protein of unknown function (DUF1211) CCNA_00230 PF00849 RNA pseudouridylate synthase CCNA_00230 PF01479 S4 domain CCNA_00231 PF14437 MafB19-like deaminase CCNA_00233 PF02719 Polysaccharide biosynthesis protein CCNA_00234 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CCNA_00237 PF00486 Transcriptional regulatory protein, C terminal CCNA_00237 PF00072 Response regulator receiver domain CCNA_00238 PF13755 Sensor N-terminal transmembrane domain CCNA_00238 PF00672 HAMP domain CCNA_00238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00238 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00238 PF13756 Stimulus-sensing domain CCNA_00240 PF03830 PTS system sorbose subfamily IIB component CCNA_00240 PF03610 PTS system fructose IIA component CCNA_00241 PF00381 PTS HPr component phosphorylation site CCNA_00245 PF01329 Pterin 4 alpha carbinolamine dehydratase CCNA_00247 PF00072 Response regulator receiver domain CCNA_00248 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00248 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00249 PF02630 SCO1/SenC CCNA_00252 PF00905 Penicillin binding protein transpeptidase domain CCNA_00252 PF00912 Transglycosylase CCNA_00253 PF01118 Semialdehyde dehydrogenase, NAD binding domain CCNA_00253 PF02774 Semialdehyde dehydrogenase, dimerisation domain CCNA_00254 PF00892 EamA-like transporter family CCNA_00255 PF00144 Beta-lactamase CCNA_00256 PF08543 Phosphomethylpyrimidine kinase CCNA_00257 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CCNA_00257 PF05221 S-adenosyl-L-homocysteine hydrolase CCNA_00261 PF00268 Ribonucleotide reductase, small chain CCNA_00262 PF08546 Ketopantoate reductase PanE/ApbA C terminal CCNA_00262 PF02558 Ketopantoate reductase PanE/ApbA CCNA_00264 PF00375 Sodium:dicarboxylate symporter family CCNA_00265 PF01048 Phosphorylase superfamily CCNA_00265 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CCNA_00266 PF00108 Thiolase, N-terminal domain CCNA_00266 PF02803 Thiolase, C-terminal domain CCNA_00267 PF09297 NADH pyrophosphatase zinc ribbon domain CCNA_00267 PF00293 NUDIX domain CCNA_00268 PF12170 DNA polymerase III tau subunit V interacting with alpha CCNA_00268 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CCNA_00268 PF12169 DNA polymerase III subunits gamma and tau domain III CCNA_00269 PF02575 YbaB/EbfC DNA-binding family CCNA_00270 PF13662 Toprim domain CCNA_00270 PF02132 RecR protein CCNA_00272 PF02646 RmuC family CCNA_00273 PF01327 Polypeptide deformylase CCNA_00277 PF07687 Peptidase dimerisation domain CCNA_00277 PF01546 Peptidase family M20/M25/M40 CCNA_00278 PF04960 Glutaminase CCNA_00280 PF01416 tRNA pseudouridine synthase CCNA_00281 PF00551 Formyl transferase CCNA_00281 PF02911 Formyl transferase, C-terminal domain CCNA_00283 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CCNA_00283 PF14602 Hexapeptide repeat of succinyl-transferase CCNA_00285 PF00696 Amino acid kinase family CCNA_00286 PF00072 Response regulator receiver domain CCNA_00287 PF07536 HWE histidine kinase CCNA_00287 PF13426 PAS domain CCNA_00291 PF11808 Phosphate regulon sensor protein PhoR CCNA_00291 PF00989 PAS fold CCNA_00291 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00292 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_00293 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_00294 PF00005 ABC transporter CCNA_00295 PF01895 PhoU domain CCNA_00296 PF00486 Transcriptional regulatory protein, C terminal CCNA_00296 PF00072 Response regulator receiver domain CCNA_00299 PF02844 Phosphoribosylglycinamide synthetase, N domain CCNA_00299 PF02843 Phosphoribosylglycinamide synthetase, C domain CCNA_00299 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CCNA_00302 PF13382 Adenine deaminase C-terminal domain CCNA_00302 PF01979 Amidohydrolase family CCNA_00303 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CCNA_00304 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CCNA_00305 PF16916 Dimerisation domain of Zinc Transporter CCNA_00305 PF01545 Cation efflux family CCNA_00307 PF00005 ABC transporter CCNA_00307 PF00664 ABC transporter transmembrane region CCNA_00310 PF00459 Inositol monophosphatase family CCNA_00311 PF01523 Putative modulator of DNA gyrase CCNA_00315 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CCNA_00316 PF01472 PUA domain CCNA_00316 PF00696 Amino acid kinase family CCNA_00317 PF01018 GTP1/OBG CCNA_00317 PF01926 50S ribosome-binding GTPase CCNA_00320 PF01016 Ribosomal L27 protein CCNA_00321 PF00829 Ribosomal prokaryotic L21 protein CCNA_00323 PF02492 CobW/HypB/UreG, nucleotide-binding domain CCNA_00323 PF07683 Cobalamin synthesis protein cobW C-terminal domain CCNA_00324 PF02472 Biopolymer transport protein ExbD/TolR CCNA_00327 PF00881 Nitroreductase family CCNA_00328 PF00912 Transglycosylase CCNA_00330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_00330 PF03459 TOBE domain CCNA_00332 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_00336 PF03055 Retinal pigment epithelial membrane protein CCNA_00338 PF00593 TonB dependent receptor CCNA_00338 PF07715 TonB-dependent Receptor Plug Domain CCNA_00339 PF07690 Major Facilitator Superfamily CCNA_00340 PF08442 ATP-grasp domain CCNA_00340 PF00549 CoA-ligase CCNA_00341 PF00549 CoA-ligase CCNA_00341 PF02629 CoA binding domain CCNA_00342 PF16078 2-oxoglutarate dehydrogenase N-terminus CCNA_00342 PF00676 Dehydrogenase E1 component CCNA_00342 PF02779 Transketolase, pyrimidine binding domain CCNA_00342 PF16870 2-oxoglutarate dehydrogenase C-terminal CCNA_00343 PF02817 e3 binding domain CCNA_00343 PF00364 Biotin-requiring enzyme CCNA_00343 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CCNA_00346 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CCNA_00346 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_00348 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_00348 PF00672 HAMP domain CCNA_00349 PF02899 Phage integrase, N-terminal SAM-like domain CCNA_00349 PF00589 Phage integrase family CCNA_00351 PF00270 DEAD/DEAH box helicase CCNA_00351 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CCNA_00351 PF18074 Primosomal protein N C-terminal domain CCNA_00351 PF17764 3′ DNA-binding domain (3′BD) CCNA_00352 PF03471 Transporter associated domain CCNA_00352 PF03741 Integral membrane protein TerC family CCNA_00353 PF01757 Acyltransferase family CCNA_00356 PF06629 MltA-interacting protein MipA CCNA_00360 PF00364 Biotin-requiring enzyme CCNA_00360 PF00561 alpha/beta hydrolase fold CCNA_00362 PF01475 Ferric uptake regulator family CCNA_00363 PF01569 PAP2 superfamily CCNA_00364 PF01916 Deoxyhypusine synthase CCNA_00366 PF00005 ABC transporter CCNA_00368 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_00369 PF01595 Cyclin M transmembrane N-terminal domain CCNA_00369 PF03471 Transporter associated domain CCNA_00369 PF00571 CBS domain CCNA_00370 PF00430 ATP synthase B/B' CF(0) CCNA_00371 PF00430 ATP synthase B/B' CF(0) CCNA_00372 PF00137 ATP synthase subunit C CCNA_00373 PF00119 ATP synthase A chain CCNA_00376 PF01925 Sulfite exporter TauE/SafE CCNA_00377 PF02463 RecF/RecN/SMC N terminal domain CCNA_00379 PF13462 Thioredoxin CCNA_00381 PF00730 HhH-GPD superfamily base excision DNA repair protein CCNA_00381 PF14815 NUDIX domain CCNA_00382 PF01555 DNA methylase CCNA_00382 PF18755 Restriction Enzyme Adenine Methylase Associated CCNA_00383 PF01351 Ribonuclease HII CCNA_00384 PF00722 Glycosyl hydrolases family 16 CCNA_00386 PF03352 Methyladenine glycosylase CCNA_00388 PF00561 alpha/beta hydrolase fold CCNA_00389 PF01571 Aminomethyltransferase folate-binding domain CCNA_00392 PF01979 Amidohydrolase family CCNA_00393 PF04542 Sigma-70 region 2 CCNA_00393 PF08281 Sigma-70, region 4 CCNA_00394 PF03795 YCII-related domain CCNA_00395 PF13193 AMP-binding enzyme C-terminal domain CCNA_00395 PF00668 Condensation domain CCNA_00395 PF00550 Phosphopantetheine attachment site CCNA_00395 PF00501 AMP-binding enzyme CCNA_00397 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CCNA_00397 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CCNA_00400 PF01047 MarR family CCNA_00401 PF00378 Enoyl-CoA hydratase/isomerase CCNA_00403 PF00106 short chain dehydrogenase CCNA_00405 PF00106 short chain dehydrogenase CCNA_00412 PF00293 NUDIX domain CCNA_00413 PF13735 tRNA nucleotidyltransferase domain 2 putative CCNA_00413 PF01743 Poly A polymerase head domain CCNA_00413 PF12627 Probable RNA and SrmB- binding site of polymerase A CCNA_00414 PF00117 Glutamine amidotransferase class-I CCNA_00414 PF00958 GMP synthase C terminal domain CCNA_00414 PF02540 NAD synthase CCNA_00419 PF02469 Fasciclin domain CCNA_00423 PF00293 NUDIX domain CCNA_00423 PF13344 Haloacid dehalogenase-like hydrolase CCNA_00424 PF00171 Aldehyde dehydrogenase family CCNA_00432 PF01037 Lrp/AsnC ligand binding domain CCNA_00432 PF13404 AsnC-type helix-turn-helix domain CCNA_00434 PF03601 Conserved hypothetical protein 698 CCNA_00435 PF13520 Amino acid permease CCNA_00436 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_00436 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_00436 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_00437 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_00439 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_00439 PF00672 HAMP domain CCNA_00441 PF00072 Response regulator receiver domain CCNA_00442 PF01584 CheW-like domain CCNA_00442 PF02895 Signal transducing histidine kinase, homodimeric domain CCNA_00442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00442 PF01627 Hpt domain CCNA_00443 PF01584 CheW-like domain CCNA_00444 PF03705 CheR methyltransferase, all-alpha domain CCNA_00444 PF01739 CheR methyltransferase, SAM binding domain CCNA_00445 PF00072 Response regulator receiver domain CCNA_00445 PF01339 CheB methylesterase CCNA_00446 PF00072 Response regulator receiver domain CCNA_00447 PF03975 CheD chemotactic sensory transduction CCNA_00449 PF01627 Hpt domain CCNA_00449 PF00072 Response regulator receiver domain CCNA_00449 PF01584 CheW-like domain CCNA_00449 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00451 PF07715 TonB-dependent Receptor Plug Domain CCNA_00451 PF00593 TonB dependent receptor CCNA_00452 PF01979 Amidohydrolase family CCNA_00453 PF01380 SIS domain CCNA_00454 PF07702 UTRA domain CCNA_00454 PF00392 Bacterial regulatory proteins, gntR family CCNA_00456 PF00728 Glycosyl hydrolase family 20, catalytic domain CCNA_00456 PF02838 Glycosyl hydrolase family 20, domain 2 CCNA_00456 PF07691 PA14 domain CCNA_00457 PF05524 PEP-utilising enzyme, N-terminal CCNA_00457 PF00391 PEP-utilising enzyme, mobile domain CCNA_00457 PF02896 PEP-utilising enzyme, TIM barrel domain CCNA_00457 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CCNA_00457 PF00381 PTS HPr component phosphorylation site CCNA_00458 PF02378 Phosphotransferase system, EIIC CCNA_00458 PF00367 phosphotransferase system, EIIB CCNA_00459 PF06965 Na+/H+ antiporter 1 CCNA_00464 PF02397 Bacterial sugar transferase CCNA_00465 PF03275 UDP-galactopyranose mutase CCNA_00466 PF13439 Glycosyltransferase Family 4 CCNA_00466 PF00534 Glycosyl transferases group 1 CCNA_00467 PF01943 Polysaccharide biosynthesis protein CCNA_00471 PF01370 NAD dependent epimerase/dehydratase family CCNA_00472 PF16363 GDP-mannose 4,6 dehydratase CCNA_00474 PF08751 TrwC relaxase CCNA_00474 PF18340 DNA relaxase TraI 2B/2B-like domain CCNA_00474 PF07057 DNA helicase TraI CCNA_00474 PF18272 single-stranded DNA binding TraI N-terminal subdomain CCNA_00475 PF02534 Type IV secretory system Conjugative DNA transfer CCNA_00480 PF00589 Phage integrase family CCNA_00480 PF13356 Arm DNA-binding domain CCNA_00481 PF01381 Helix-turn-helix CCNA_00482 PF13657 HipA N-terminal domain CCNA_00482 PF07804 HipA-like C-terminal domain CCNA_00483 PF04273 Putative phosphatase (DUF442) CCNA_00483 PF00753 Metallo-beta-lactamase superfamily CCNA_00485 PF00849 RNA pseudouridylate synthase CCNA_00486 PF07715 TonB-dependent Receptor Plug Domain CCNA_00486 PF00593 TonB dependent receptor CCNA_00487 PF09423 PhoD-like phosphatase CCNA_00487 PF16655 PhoD-like phosphatase, N-terminal domain CCNA_00488 PF01810 LysE type translocator CCNA_00489 PF01502 Phosphoribosyl-AMP cyclohydrolase CCNA_00490 PF05675 Protein of unknown function (DUF817) CCNA_00491 PF01227 GTP cyclohydrolase I CCNA_00492 PF09190 DALR domain CCNA_00492 PF01406 tRNA synthetases class I (C) catalytic domain CCNA_00495 PF01809 Putative membrane protein insertion efficiency factor CCNA_00496 PF02824 TGS domain CCNA_00496 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CCNA_00496 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CCNA_00496 PF03129 Anticodon binding domain CCNA_00500 PF00682 HMGL-like CCNA_00502 PF00535 Glycosyl transferase family 2 CCNA_00504 PF00588 SpoU rRNA Methylase family CCNA_00505 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CCNA_00505 PF00355 Rieske [2Fe-2S] domain CCNA_00506 PF00032 Cytochrome b(C-terminal)/b6/petD CCNA_00506 PF02167 Cytochrome C1 family CCNA_00506 PF00033 Cytochrome b/b6/petB CCNA_00507 PF00033 Cytochrome b/b6/petB CCNA_00507 PF02167 Cytochrome C1 family CCNA_00507 PF00032 Cytochrome b(C-terminal)/b6/petD CCNA_00511 PF01738 Dienelactone hydrolase family CCNA_00512 PF01926 50S ribosome-binding GTPase CCNA_00512 PF06071 Protein of unknown function (DUF933) CCNA_00514 PF05726 Pirin C-terminal cupin domain CCNA_00514 PF02678 Pirin CCNA_00515 PF01717 Cobalamin-independent synthase, Catalytic domain CCNA_00515 PF08267 Cobalamin-independent synthase, N-terminal domain CCNA_00517 PF01195 Peptidyl-tRNA hydrolase CCNA_00518 PF14693 Ribosomal protein TL5, C-terminal domain CCNA_00518 PF01386 Ribosomal L25p family CCNA_00520 PF14572 Phosphoribosyl synthetase-associated domain CCNA_00520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CCNA_00523 PF02578 Multi-copper polyphenol oxidoreductase laccase CCNA_00525 PF01790 Prolipoprotein diacylglyceryl transferase CCNA_00528 PF03807 NADP oxidoreductase coenzyme F420-dependent CCNA_00528 PF14748 Pyrroline-5-carboxylate reductase dimerisation CCNA_00530 PF00466 Ribosomal protein L10 CCNA_00531 PF00542 Ribosomal protein L7/L12 C-terminal domain CCNA_00531 PF16320 Ribosomal protein L7/L12 dimerisation domain CCNA_00536 PF04561 RNA polymerase Rpb2, domain 2 CCNA_00536 PF04563 RNA polymerase beta subunit CCNA_00536 PF10385 RNA polymerase beta subunit external 1 domain CCNA_00536 PF04565 RNA polymerase Rpb2, domain 3 CCNA_00536 PF04560 RNA polymerase Rpb2, domain 7 CCNA_00536 PF00562 RNA polymerase Rpb2, domain 6 CCNA_00537 PF00623 RNA polymerase Rpb1, domain 2 CCNA_00537 PF04998 RNA polymerase Rpb1, domain 5 CCNA_00537 PF04983 RNA polymerase Rpb1, domain 3 CCNA_00537 PF05000 RNA polymerase Rpb1, domain 4 CCNA_00537 PF04997 RNA polymerase Rpb1, domain 1 CCNA_00538 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_00538 PF00672 HAMP domain CCNA_00540 PF01218 Coproporphyrinogen III oxidase CCNA_00543 PF07879 PHB/PHA accumulation regulator DNA-binding domain CCNA_00543 PF05233 PHB accumulation regulatory domain CCNA_00544 PF02803 Thiolase, C-terminal domain CCNA_00544 PF00108 Thiolase, N-terminal domain CCNA_00548 PF01527 Transposase CCNA_00549 PF13276 HTH-like domain CCNA_00549 PF13683 Integrase core domain CCNA_00550 PF00356 Bacterial regulatory proteins, lacI family CCNA_00553 PF16123 Hydroxyacylglutathione hydrolase C-terminus CCNA_00553 PF00753 Metallo-beta-lactamase superfamily CCNA_00555 PF00543 Nitrogen regulatory protein P-II CCNA_00559 PF00561 alpha/beta hydrolase fold CCNA_00562 PF01180 Dihydroorotate dehydrogenase CCNA_00564 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00564 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00564 PF00989 PAS fold CCNA_00564 PF00672 HAMP domain CCNA_00566 PF13378 Enolase C-terminal domain-like CCNA_00566 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CCNA_00567 PF17678 Glycosyl hydrolase family 92 N-terminal domain CCNA_00567 PF07971 Glycosyl hydrolase family 92 CCNA_00568 PF01979 Amidohydrolase family CCNA_00569 PF01380 SIS domain CCNA_00570 PF00392 Bacterial regulatory proteins, gntR family CCNA_00570 PF07702 UTRA domain CCNA_00571 PF00391 PEP-utilising enzyme, mobile domain CCNA_00571 PF02896 PEP-utilising enzyme, TIM barrel domain CCNA_00571 PF05524 PEP-utilising enzyme, N-terminal CCNA_00571 PF00381 PTS HPr component phosphorylation site CCNA_00571 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CCNA_00572 PF02378 Phosphotransferase system, EIIC CCNA_00572 PF00367 phosphotransferase system, EIIB CCNA_00579 PF01223 DNA/RNA non-specific endonuclease CCNA_00586 PF04397 LytTr DNA-binding domain CCNA_00586 PF00072 Response regulator receiver domain CCNA_00591 PF17990 L-Lysine epsilon oxidase N-terminal CCNA_00591 PF18417 L-lysine epsilon oxidase C-terminal domain CCNA_00601 PF07726 ATPase family associated with various cellular activities (AAA) CCNA_00601 PF17863 AAA lid domain CCNA_00608 PF00295 Glycosyl hydrolases family 28 CCNA_00609 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CCNA_00609 PF00356 Bacterial regulatory proteins, lacI family CCNA_00611 PF00144 Beta-lactamase CCNA_00612 PF01112 Asparaginase CCNA_00613 PF03575 Peptidase family S51 CCNA_00614 PF03606 C4-dicarboxylate anaerobic carrier CCNA_00615 PF00593 TonB dependent receptor CCNA_00615 PF07715 TonB-dependent Receptor Plug Domain CCNA_00616 PF01037 Lrp/AsnC ligand binding domain CCNA_00617 PF04958 Arginine N-succinyltransferase beta subunit CCNA_00618 PF00171 Aldehyde dehydrogenase family CCNA_00619 PF04996 Succinylarginine dihydrolase CCNA_00620 PF00202 Aminotransferase class-III CCNA_00623 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00623 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00625 PF00072 Response regulator receiver domain CCNA_00625 PF00486 Transcriptional regulatory protein, C terminal CCNA_00626 PF00672 HAMP domain CCNA_00626 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_00626 PF02203 Tar ligand binding domain homologue CCNA_00628 PF00072 Response regulator receiver domain CCNA_00629 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_00629 PF08269 Cache domain CCNA_00630 PF01584 CheW-like domain CCNA_00630 PF01627 Hpt domain CCNA_00630 PF00072 Response regulator receiver domain CCNA_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00630 PF02895 Signal transducing histidine kinase, homodimeric domain CCNA_00632 PF00072 Response regulator receiver domain CCNA_00633 PF01339 CheB methylesterase CCNA_00633 PF00072 Response regulator receiver domain CCNA_00634 PF03705 CheR methyltransferase, all-alpha domain CCNA_00634 PF01739 CheR methyltransferase, SAM binding domain CCNA_00638 PF05860 haemagglutination activity domain CCNA_00646 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_00647 PF00005 ABC transporter CCNA_00650 PF07690 Major Facilitator Superfamily CCNA_00651 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CCNA_00651 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CCNA_00651 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_00651 PF18267 Rubredoxin NAD+ reductase C-terminal domain CCNA_00651 PF04324 BFD-like [2Fe-2S] binding domain CCNA_00652 PF00355 Rieske [2Fe-2S] domain CCNA_00653 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CCNA_00653 PF04324 BFD-like [2Fe-2S] binding domain CCNA_00653 PF01568 Molydopterin dinucleotide binding domain CCNA_00653 PF00384 Molybdopterin oxidoreductase CCNA_00654 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CCNA_00654 PF10414 Sirohaem synthase dimerisation region CCNA_00656 PF02384 N-6 DNA Methylase CCNA_00657 PF01420 Type I restriction modification DNA specificity domain CCNA_00660 PF00665 Integrase core domain CCNA_00664 PF00375 Sodium:dicarboxylate symporter family CCNA_00665 PF08447 PAS fold CCNA_00665 PF13426 PAS domain CCNA_00665 PF07536 HWE histidine kinase CCNA_00669 PF14307 Glycosyltransferase WbsX CCNA_00669 PF05045 Rhamnan synthesis protein F CCNA_00670 PF00005 ABC transporter CCNA_00673 PF12833 Helix-turn-helix domain CCNA_00673 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CCNA_00675 PF01850 PIN domain CCNA_00677 PF00687 Ribosomal protein L1p/L10e family CCNA_00678 PF00298 Ribosomal protein L11, RNA binding domain CCNA_00678 PF03946 Ribosomal protein L11, N-terminal domain CCNA_00680 PF01323 DSBA-like thioredoxin domain CCNA_00682 PF01638 HxlR-like helix-turn-helix CCNA_00683 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CCNA_00685 PF04545 Sigma-70, region 4 CCNA_00685 PF04542 Sigma-70 region 2 CCNA_00689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00689 PF00072 Response regulator receiver domain CCNA_00689 PF00497 Bacterial extracellular solute-binding proteins, family 3 CCNA_00689 PF01627 Hpt domain CCNA_00689 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00691 PF00037 4Fe-4S binding domain CCNA_00691 PF11953 Domain of unknown function (DUF3470) CCNA_00692 PF00563 EAL domain CCNA_00692 PF00990 Diguanylate cyclase, GGDEF domain CCNA_00692 PF03707 Bacterial signalling protein N terminal repeat CCNA_00695 PF01979 Amidohydrolase family CCNA_00699 PF00830 Ribosomal L28 family CCNA_00701 PF00313 'Cold-shock' DNA-binding domain CCNA_00708 PF06213 Cobalamin biosynthesis protein CobT CCNA_00708 PF11775 Cobalamin biosynthesis protein CobT VWA domain CCNA_00709 PF07043 Protein of unknown function (DUF1328) CCNA_00720 PF00664 ABC transporter transmembrane region CCNA_00720 PF03412 Peptidase C39 family CCNA_00720 PF00005 ABC transporter CCNA_00721 PF00118 TCP-1/cpn60 chaperonin family CCNA_00722 PF00166 Chaperonin 10 Kd subunit CCNA_00725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CCNA_00725 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CCNA_00726 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_00726 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_00726 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_00730 PF07739 TipAS antibiotic-recognition domain CCNA_00730 PF13411 MerR HTH family regulatory protein CCNA_00731 PF01119 DNA mismatch repair protein, C-terminal domain CCNA_00731 PF08676 MutL C terminal dimerisation domain CCNA_00736 PF01252 Signal peptidase (SPase) II CCNA_00737 PF00133 tRNA synthetases class I (I, L, M and V) CCNA_00737 PF08264 Anticodon-binding domain of tRNA CCNA_00738 PF13180 PDZ domain CCNA_00740 PF01687 Riboflavin kinase CCNA_00740 PF06574 FAD synthetase CCNA_00741 PF01575 MaoC like domain CCNA_00745 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA CCNA_00746 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CCNA_00746 PF02805 Metal binding domain of Ada CCNA_00746 PF12833 Helix-turn-helix domain CCNA_00746 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CCNA_00747 PF00563 EAL domain CCNA_00747 PF12792 CSS motif domain associated with EAL CCNA_00749 PF07664 Ferrous iron transport protein B C terminus CCNA_00749 PF02421 Ferrous iron transport protein B CCNA_00749 PF07670 Nucleoside recognition CCNA_00751 PF04235 Protein of unknown function (DUF418) CCNA_00752 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CCNA_00752 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CCNA_00753 PF04055 Radical SAM superfamily CCNA_00753 PF12544 Lysine-2,3-aminomutase CCNA_00757 PF00152 tRNA synthetases class II (D, K and N) CCNA_00758 PF08207 Elongation factor P (EF-P) KOW-like domain CCNA_00758 PF01132 Elongation factor P (EF-P) OB domain CCNA_00758 PF09285 Elongation factor P, C-terminal CCNA_00760 PF01627 Hpt domain CCNA_00760 PF00072 Response regulator receiver domain CCNA_00760 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00760 PF00672 HAMP domain CCNA_00760 PF17149 Periplasmic sensor domain found in signal transduction proteins CCNA_00763 PF01012 Electron transfer flavoprotein domain CCNA_00763 PF00766 Electron transfer flavoprotein FAD-binding domain CCNA_00764 PF01012 Electron transfer flavoprotein domain CCNA_00766 PF01923 Cobalamin adenosyltransferase CCNA_00769 PF08361 MAATS-type transcriptional repressor, C-terminal region CCNA_00769 PF00440 Bacterial regulatory proteins, tetR family CCNA_00770 PF00440 Bacterial regulatory proteins, tetR family CCNA_00770 PF17932 Tetracyclin repressor-like, C-terminal domain CCNA_00773 PF01546 Peptidase family M20/M25/M40 CCNA_00773 PF07687 Peptidase dimerisation domain CCNA_00775 PF00155 Aminotransferase class I and II CCNA_00777 PF00990 Diguanylate cyclase, GGDEF domain CCNA_00777 PF03707 Bacterial signalling protein N terminal repeat CCNA_00777 PF13188 PAS domain CCNA_00777 PF00563 EAL domain CCNA_00778 PF03144 Elongation factor Tu domain 2 CCNA_00778 PF00679 Elongation factor G C-terminus CCNA_00778 PF00009 Elongation factor Tu GTP binding domain CCNA_00781 PF00072 Response regulator receiver domain CCNA_00782 PF03806 AbgT putative transporter family CCNA_00783 PF08548 Peptidase M10 serralysin C terminal CCNA_00783 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CCNA_00783 PF00413 Matrixin CCNA_00785 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CCNA_00785 PF01266 FAD dependent oxidoreductase CCNA_00787 PF01618 MotA/TolQ/ExbB proton channel family CCNA_00788 PF07690 Major Facilitator Superfamily CCNA_00789 PF00027 Cyclic nucleotide-binding domain CCNA_00789 PF13545 Crp-like helix-turn-helix domain CCNA_00792 PF13579 Glycosyl transferase 4-like domain CCNA_00792 PF00534 Glycosyl transferases group 1 CCNA_00793 PF00534 Glycosyl transferases group 1 CCNA_00793 PF13439 Glycosyltransferase Family 4 CCNA_00795 PF00072 Response regulator receiver domain CCNA_00795 PF00196 Bacterial regulatory proteins, luxR family CCNA_00796 PF00989 PAS fold CCNA_00796 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00798 PF00664 ABC transporter transmembrane region CCNA_00798 PF00005 ABC transporter CCNA_00799 PF00005 ABC transporter CCNA_00799 PF00664 ABC transporter transmembrane region CCNA_00800 PF01654 Cytochrome bd terminal oxidase subunit I CCNA_00801 PF02322 Cytochrome bd terminal oxidase subunit II CCNA_00803 PF01584 CheW-like domain CCNA_00805 PF01926 50S ribosome-binding GTPase CCNA_00806 PF02096 60Kd inner membrane protein CCNA_00806 PF14849 YidC periplasmic domain CCNA_00807 PF00825 Ribonuclease P CCNA_00808 PF00468 Ribosomal protein L34 CCNA_00809 PF02801 Beta-ketoacyl synthase, C-terminal domain CCNA_00809 PF00698 Acyl transferase domain CCNA_00809 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_00809 PF00107 Zinc-binding dehydrogenase CCNA_00809 PF16197 Ketoacyl-synthetase C-terminal extension CCNA_00809 PF00109 Beta-ketoacyl synthase, N-terminal domain CCNA_00809 PF14765 Polyketide synthase dehydratase CCNA_00809 PF00550 Phosphopantetheine attachment site CCNA_00809 PF08659 KR domain CCNA_00810 PF07859 alpha/beta hydrolase fold CCNA_00813 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_00815 PF03055 Retinal pigment epithelial membrane protein CCNA_00817 PF07995 Glucose / Sorbosone dehydrogenase CCNA_00820 PF02803 Thiolase, C-terminal domain CCNA_00820 PF00108 Thiolase, N-terminal domain CCNA_00824 PF07729 FCD domain CCNA_00824 PF00392 Bacterial regulatory proteins, gntR family CCNA_00825 PF01081 KDPG and KHG aldolase CCNA_00826 PF05035 2-keto-3-deoxy-galactonokinase CCNA_00828 PF04820 Tryptophan halogenase CCNA_00830 PF08533 Beta-galactosidase C-terminal domain CCNA_00830 PF08532 Beta-galactosidase trimerisation domain CCNA_00830 PF02449 Beta-galactosidase CCNA_00831 PF16338 Domain of unknown function (DUF4968) CCNA_00831 PF17137 Domain of unknown function (DUF5110) CCNA_00831 PF01055 Glycosyl hydrolases family 31 CCNA_00832 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_00832 PF03466 LysR substrate binding domain CCNA_00833 PF03358 NADPH-dependent FMN reductase CCNA_00834 PF00669 Bacterial flagellin N-terminal helical region CCNA_00834 PF00700 Bacterial flagellin C-terminal helical region CCNA_00835 PF00700 Bacterial flagellin C-terminal helical region CCNA_00835 PF00669 Bacterial flagellin N-terminal helical region CCNA_00836 PF00700 Bacterial flagellin C-terminal helical region CCNA_00836 PF00669 Bacterial flagellin N-terminal helical region CCNA_00838 PF14508 Glycosyl-hydrolase 97 N-terminal CCNA_00838 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation CCNA_00838 PF10566 Glycoside hydrolase 97 CCNA_00839 PF14310 Fibronectin type III-like domain CCNA_00839 PF00933 Glycosyl hydrolase family 3 N terminal domain CCNA_00839 PF01915 Glycosyl hydrolase family 3 C-terminal domain CCNA_00841 PF00135 Carboxylesterase family CCNA_00844 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CCNA_00846 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CCNA_00846 PF14850 DNA-binding domain of Proline dehydrogenase CCNA_00846 PF01619 Proline dehydrogenase CCNA_00846 PF00171 Aldehyde dehydrogenase family CCNA_00847 PF01037 Lrp/AsnC ligand binding domain CCNA_00849 PF02321 Outer membrane efflux protein CCNA_00850 PF00873 AcrB/AcrD/AcrF family CCNA_00851 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CCNA_00851 PF00529 HlyD membrane-fusion protein of T1SS CCNA_00852 PF00440 Bacterial regulatory proteins, tetR family CCNA_00852 PF13977 BetI-type transcriptional repressor, C-terminal CCNA_00853 PF03641 Possible lysine decarboxylase CCNA_00854 PF10996 Beta-Casp domain CCNA_00854 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CCNA_00854 PF00753 Metallo-beta-lactamase superfamily CCNA_00855 PF00657 GDSL-like Lipase/Acylhydrolase CCNA_00856 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CCNA_00856 PF04616 Glycosyl hydrolases family 43 CCNA_00857 PF00083 Sugar (and other) transporter CCNA_00858 PF07715 TonB-dependent Receptor Plug Domain CCNA_00858 PF00593 TonB dependent receptor CCNA_00859 PF00583 Acetyltransferase (GNAT) family CCNA_00862 PF00920 Dehydratase family CCNA_00863 PF08450 SMP-30/Gluconolactonase/LRE-like region CCNA_00865 PF00171 Aldehyde dehydrogenase family CCNA_00871 PF00795 Carbon-nitrogen hydrolase CCNA_00872 PF00462 Glutaredoxin CCNA_00876 PF00293 NUDIX domain CCNA_00878 PF00270 DEAD/DEAH box helicase CCNA_00878 PF00271 Helicase conserved C-terminal domain CCNA_00879 PF13426 PAS domain CCNA_00879 PF07536 HWE histidine kinase CCNA_00879 PF08447 PAS fold CCNA_00881 PF13732 Domain of unknown function (DUF4162) CCNA_00881 PF00005 ABC transporter CCNA_00883 PF08241 Methyltransferase domain CCNA_00886 PF01842 ACT domain CCNA_00886 PF00696 Amino acid kinase family CCNA_00886 PF13840 ACT domain CCNA_00891 PF00892 EamA-like transporter family CCNA_00892 PF05524 PEP-utilising enzyme, N-terminal CCNA_00892 PF00391 PEP-utilising enzyme, mobile domain CCNA_00892 PF02896 PEP-utilising enzyme, TIM barrel domain CCNA_00894 PF04551 GcpE protein CCNA_00898 PF00849 RNA pseudouridylate synthase CCNA_00898 PF01479 S4 domain CCNA_00899 PF00472 RF-1 domain CCNA_00899 PF03462 PCRF domain CCNA_00900 PF00990 Diguanylate cyclase, GGDEF domain CCNA_00900 PF13188 PAS domain CCNA_00900 PF00563 EAL domain CCNA_00900 PF03707 Bacterial signalling protein N terminal repeat CCNA_00902 PF13407 Periplasmic binding protein domain CCNA_00903 PF00005 ABC transporter CCNA_00904 PF02653 Branched-chain amino acid transport system / permease component CCNA_00908 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CCNA_00908 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CCNA_00916 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CCNA_00917 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CCNA_00918 PF13847 Methyltransferase domain CCNA_00918 PF17827 PrmC N-terminal domain CCNA_00921 PF01435 Peptidase family M48 CCNA_00922 PF00004 ATPase family associated with various cellular activities (AAA) CCNA_00922 PF10431 C-terminal, D2-small domain, of ClpB protein CCNA_00922 PF02861 Clp amino terminal domain, pathogenicity island component CCNA_00922 PF17871 AAA lid domain CCNA_00922 PF07724 AAA domain (Cdc48 subfamily) CCNA_00929 PF01872 RibD C-terminal domain CCNA_00929 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CCNA_00930 PF00677 Lumazine binding domain CCNA_00931 PF00925 GTP cyclohydrolase II CCNA_00931 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CCNA_00932 PF00885 6,7-dimethyl-8-ribityllumazine synthase CCNA_00933 PF04151 Bacterial pre-peptidase C-terminal domain CCNA_00933 PF04389 Peptidase family M28 CCNA_00938 PF02803 Thiolase, C-terminal domain CCNA_00938 PF00108 Thiolase, N-terminal domain CCNA_00939 PF01638 HxlR-like helix-turn-helix CCNA_00940 PF13188 PAS domain CCNA_00940 PF00563 EAL domain CCNA_00940 PF03707 Bacterial signalling protein N terminal repeat CCNA_00940 PF00990 Diguanylate cyclase, GGDEF domain CCNA_00947 PF00460 Flagella basal body rod protein CCNA_00947 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CCNA_00947 PF07559 Flagellar basal body protein FlaE CCNA_00950 PF01514 Secretory protein of YscJ/FliF family CCNA_00950 PF08345 Flagellar M-ring protein C-terminal CCNA_00951 PF01706 FliG C-terminal domain CCNA_00951 PF14841 FliG middle domain CCNA_00951 PF14842 FliG N-terminal domain CCNA_00953 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CCNA_00954 PF00158 Sigma-54 interaction domain CCNA_00954 PF02954 Bacterial regulatory protein, Fis family CCNA_00956 PF00771 FHIPEP family CCNA_00957 PF07396 Phosphate-selective porin O and P CCNA_00962 PF01047 MarR family CCNA_00963 PF02566 OsmC-like protein CCNA_00965 PF00226 DnaJ domain CCNA_00965 PF01556 DnaJ C terminal domain CCNA_00966 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CCNA_00966 PF01243 Pyridoxamine 5'-phosphate oxidase CCNA_00969 PF17149 Periplasmic sensor domain found in signal transduction proteins CCNA_00969 PF00672 HAMP domain CCNA_00969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00969 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00969 PF00072 Response regulator receiver domain CCNA_00969 PF01627 Hpt domain CCNA_00970 PF00501 AMP-binding enzyme CCNA_00970 PF13193 AMP-binding enzyme C-terminal domain CCNA_00971 PF00753 Metallo-beta-lactamase superfamily CCNA_00971 PF16123 Hydroxyacylglutathione hydrolase C-terminus CCNA_00974 PF00593 TonB dependent receptor CCNA_00976 PF01343 Peptidase family S49 CCNA_00977 PF13340 Putative transposase of IS4/5 family (DUF4096) CCNA_00978 PF01609 Transposase DDE domain CCNA_00979 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CCNA_00979 PF00529 HlyD membrane-fusion protein of T1SS CCNA_00980 PF00005 ABC transporter CCNA_00980 PF02687 FtsX-like permease family CCNA_00980 PF12704 MacB-like periplasmic core domain CCNA_00981 PF00005 ABC transporter CCNA_00982 PF05443 ROS/MUCR transcriptional regulator protein CCNA_00983 PF00072 Response regulator receiver domain CCNA_00983 PF00512 His Kinase A (phospho-acceptor) domain CCNA_00983 PF01627 Hpt domain CCNA_00983 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_00985 PF00326 Prolyl oligopeptidase family CCNA_00985 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CCNA_00987 PF05532 CsbD-like CCNA_00989 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CCNA_00989 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CCNA_00991 PF01575 MaoC like domain CCNA_00993 PF00501 AMP-binding enzyme CCNA_00993 PF13193 AMP-binding enzyme C-terminal domain CCNA_00994 PF00732 GMC oxidoreductase CCNA_00994 PF05199 GMC oxidoreductase CCNA_00995 PF00067 Cytochrome P450 CCNA_00996 PF00378 Enoyl-CoA hydratase/isomerase CCNA_00998 PF05443 ROS/MUCR transcriptional regulator protein CCNA_01001 PF00294 pfkB family carbohydrate kinase CCNA_01002 PF00813 FliP family CCNA_01003 PF04347 Flagellar biosynthesis protein, FliO CCNA_01005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CCNA_01006 PF02049 Flagellar hook-basal body complex protein FliE CCNA_01008 PF17392 Urocanase C-terminal domain CCNA_01008 PF01175 Urocanase Rossmann-like domain CCNA_01008 PF17391 Urocanase N-terminal domain CCNA_01010 PF00221 Aromatic amino acid lyase CCNA_01011 PF01979 Amidohydrolase family CCNA_01014 PF04073 Aminoacyl-tRNA editing domain CCNA_01015 PF07732 Multicopper oxidase CCNA_01015 PF00394 Multicopper oxidase CCNA_01015 PF07731 Multicopper oxidase CCNA_01016 PF05275 Copper resistance protein B precursor (CopB) CCNA_01017 PF00501 AMP-binding enzyme CCNA_01017 PF13193 AMP-binding enzyme C-terminal domain CCNA_01018 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CCNA_01019 PF14310 Fibronectin type III-like domain CCNA_01019 PF01915 Glycosyl hydrolase family 3 C-terminal domain CCNA_01019 PF00933 Glycosyl hydrolase family 3 N terminal domain CCNA_01020 PF00356 Bacterial regulatory proteins, lacI family CCNA_01022 PF04820 Tryptophan halogenase CCNA_01023 PF04820 Tryptophan halogenase CCNA_01028 PF00883 Cytosol aminopeptidase family, catalytic domain CCNA_01028 PF02789 Cytosol aminopeptidase family, N-terminal domain CCNA_01029 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain CCNA_01029 PF08531 Alpha-L-rhamnosidase N-terminal domain CCNA_01029 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain CCNA_01029 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain CCNA_01030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CCNA_01031 PF08946 Osmosensory transporter coiled coil CCNA_01031 PF00083 Sugar (and other) transporter CCNA_01034 PF00593 TonB dependent receptor CCNA_01034 PF07715 TonB-dependent Receptor Plug Domain CCNA_01037 PF00392 Bacterial regulatory proteins, gntR family CCNA_01037 PF07729 FCD domain CCNA_01039 PF07690 Major Facilitator Superfamily CCNA_01040 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CCNA_01040 PF04616 Glycosyl hydrolases family 43 CCNA_01042 PF07715 TonB-dependent Receptor Plug Domain CCNA_01042 PF00593 TonB dependent receptor CCNA_01046 PF01625 Peptide methionine sulfoxide reductase CCNA_01050 PF00005 ABC transporter CCNA_01050 PF12848 ABC transporter CCNA_01054 PF04820 Tryptophan halogenase CCNA_01056 PF05050 Methyltransferase FkbM domain CCNA_01059 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CCNA_01060 PF00664 ABC transporter transmembrane region CCNA_01060 PF00005 ABC transporter CCNA_01061 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CCNA_01061 PF00529 HlyD membrane-fusion protein of T1SS CCNA_01062 PF16363 GDP-mannose 4,6 dehydratase CCNA_01064 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CCNA_01069 PF10119 Predicted methyltransferase regulatory domain CCNA_01069 PF13847 Methyltransferase domain CCNA_01071 PF00083 Sugar (and other) transporter CCNA_01077 PF01804 Penicillin amidase CCNA_01078 PF13847 Methyltransferase domain CCNA_01083 PF08676 MutL C terminal dimerisation domain CCNA_01083 PF01119 DNA mismatch repair protein, C-terminal domain CCNA_01085 PF00145 C-5 cytosine-specific DNA methylase CCNA_01086 PF06421 GTP-binding protein LepA C-terminus CCNA_01086 PF00679 Elongation factor G C-terminus CCNA_01086 PF00009 Elongation factor Tu GTP binding domain CCNA_01086 PF03144 Elongation factor Tu domain 2 CCNA_01088 PF03350 Uncharacterized protein family, UPF0114 CCNA_01091 PF01625 Peptide methionine sulfoxide reductase CCNA_01095 PF01588 Putative tRNA binding domain CCNA_01095 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CCNA_01095 PF03147 Ferredoxin-fold anticodon binding domain CCNA_01095 PF03483 B3/4 domain CCNA_01095 PF03484 tRNA synthetase B5 domain CCNA_01096 PF01409 tRNA synthetases class II core domain (F) CCNA_01096 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CCNA_01097 PF00453 Ribosomal protein L20 CCNA_01098 PF01632 Ribosomal protein L35 CCNA_01099 PF07690 Major Facilitator Superfamily CCNA_01101 PF00707 Translation initiation factor IF-3, C-terminal domain CCNA_01101 PF05198 Translation initiation factor IF-3, N-terminal domain CCNA_01104 PF13477 Glycosyl transferase 4-like CCNA_01104 PF00534 Glycosyl transferases group 1 CCNA_01106 PF01402 Ribbon-helix-helix protein, copG family CCNA_01110 PF00294 pfkB family carbohydrate kinase CCNA_01111 PF08299 Bacterial dnaA protein helix-turn-helix CCNA_01111 PF00308 Bacterial dnaA protein CCNA_01111 PF11638 DnaA N-terminal domain CCNA_01113 PF17773 UPF0176 acylphosphatase like domain CCNA_01113 PF00581 Rhodanese-like domain CCNA_01114 PF02657 Fe-S metabolism associated domain CCNA_01115 PF13188 PAS domain CCNA_01115 PF00989 PAS fold CCNA_01115 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01116 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01116 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01123 PF00009 Elongation factor Tu GTP binding domain CCNA_01123 PF03144 Elongation factor Tu domain 2 CCNA_01123 PF16658 Class II release factor RF3, C-terminal domain CCNA_01124 PF00155 Aminotransferase class I and II CCNA_01129 PF01313 Bacterial export proteins, family 3 CCNA_01130 PF01311 Bacterial export proteins, family 1 CCNA_01131 PF01312 FlhB HrpN YscU SpaS Family CCNA_01132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01132 PF08448 PAS fold CCNA_01132 PF13188 PAS domain CCNA_01132 PF00072 Response regulator receiver domain CCNA_01132 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01134 PF00196 Bacterial regulatory proteins, luxR family CCNA_01140 PF08448 PAS fold CCNA_01140 PF00563 EAL domain CCNA_01140 PF00990 Diguanylate cyclase, GGDEF domain CCNA_01141 PF00154 recA bacterial DNA recombination protein CCNA_01144 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CCNA_01144 PF00034 Cytochrome c CCNA_01144 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CCNA_01145 PF01593 Flavin containing amine oxidoreductase CCNA_01149 PF07715 TonB-dependent Receptor Plug Domain CCNA_01149 PF00593 TonB dependent receptor CCNA_01152 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CCNA_01153 PF02417 Chromate transporter CCNA_01155 PF07715 TonB-dependent Receptor Plug Domain CCNA_01155 PF00593 TonB dependent receptor CCNA_01157 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CCNA_01157 PF01266 FAD dependent oxidoreductase CCNA_01159 PF07690 Major Facilitator Superfamily CCNA_01161 PF00375 Sodium:dicarboxylate symporter family CCNA_01162 PF14310 Fibronectin type III-like domain CCNA_01162 PF01915 Glycosyl hydrolase family 3 C-terminal domain CCNA_01162 PF00933 Glycosyl hydrolase family 3 N terminal domain CCNA_01167 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_01167 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_01167 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_01168 PF00108 Thiolase, N-terminal domain CCNA_01168 PF02803 Thiolase, C-terminal domain CCNA_01174 PF03466 LysR substrate binding domain CCNA_01174 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_01175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CCNA_01175 PF10414 Sirohaem synthase dimerisation region CCNA_01177 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CCNA_01177 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CCNA_01179 PF01507 Phosphoadenosine phosphosulfate reductase family CCNA_01187 PF04542 Sigma-70 region 2 CCNA_01187 PF08281 Sigma-70, region 4 CCNA_01191 PF07690 Major Facilitator Superfamily CCNA_01192 PF00480 ROK family CCNA_01193 PF00128 Alpha amylase, catalytic domain CCNA_01195 PF00356 Bacterial regulatory proteins, lacI family CCNA_01198 PF04321 RmlD substrate binding domain CCNA_01199 PF00483 Nucleotidyl transferase CCNA_01204 PF01370 NAD dependent epimerase/dehydratase family CCNA_01205 PF00005 ABC transporter CCNA_01207 PF07730 Histidine kinase CCNA_01207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01208 PF00196 Bacterial regulatory proteins, luxR family CCNA_01208 PF00072 Response regulator receiver domain CCNA_01209 PF01070 FMN-dependent dehydrogenase CCNA_01210 PF00483 Nucleotidyl transferase CCNA_01216 PF00149 Calcineurin-like phosphoesterase CCNA_01220 PF00155 Aminotransferase class I and II CCNA_01221 PF00550 Phosphopantetheine attachment site CCNA_01223 PF00501 AMP-binding enzyme CCNA_01227 PF00296 Luciferase-like monooxygenase CCNA_01228 PF00857 Isochorismatase family CCNA_01229 PF01323 DSBA-like thioredoxin domain CCNA_01230 PF00884 Sulfatase CCNA_01231 PF03781 Sulfatase-modifying factor enzyme 1 CCNA_01233 PF12697 Alpha/beta hydrolase family CCNA_01234 PF12706 Beta-lactamase superfamily domain CCNA_01239 PF00672 HAMP domain CCNA_01239 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01239 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01239 PF16527 Two-component sensor protein CpxA, periplasmic domain CCNA_01240 PF00486 Transcriptional regulatory protein, C terminal CCNA_01240 PF00072 Response regulator receiver domain CCNA_01241 PF00753 Metallo-beta-lactamase superfamily CCNA_01242 PF13520 Amino acid permease CCNA_01243 PF08482 ATP-dependent helicase C-terminal CCNA_01243 PF04408 Helicase associated domain (HA2) CCNA_01243 PF00271 Helicase conserved C-terminal domain CCNA_01243 PF00270 DEAD/DEAH box helicase CCNA_01245 PF00588 SpoU rRNA Methylase family CCNA_01245 PF08032 RNA 2'-O ribose methyltransferase substrate binding CCNA_01246 PF01170 Putative RNA methylase family UPF0020 CCNA_01246 PF02926 THUMP domain CCNA_01246 PF10672 S-adenosylmethionine-dependent methyltransferase CCNA_01250 PF01032 FecCD transport family CCNA_01251 PF00005 ABC transporter CCNA_01252 PF14718 Soluble lytic murein transglycosylase L domain CCNA_01252 PF01464 Transglycosylase SLT domain CCNA_01253 PF00701 Dihydrodipicolinate synthetase family CCNA_01254 PF01668 SmpB protein CCNA_01259 PF00596 Class II Aldolase and Adducin N-terminal domain CCNA_01261 PF00529 HlyD membrane-fusion protein of T1SS CCNA_01261 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CCNA_01262 PF00873 AcrB/AcrD/AcrF family CCNA_01268 PF00034 Cytochrome c CCNA_01272 PF00472 RF-1 domain CCNA_01273 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CCNA_01274 PF00171 Aldehyde dehydrogenase family CCNA_01275 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CCNA_01275 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CCNA_01277 PF01565 FAD binding domain CCNA_01277 PF04030 D-arabinono-1,4-lactone oxidase CCNA_01279 PF01513 ATP-NAD kinase CCNA_01281 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CCNA_01281 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CCNA_01282 PF08450 SMP-30/Gluconolactonase/LRE-like region CCNA_01283 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CCNA_01283 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CCNA_01285 PF00561 alpha/beta hydrolase fold CCNA_01287 PF00561 alpha/beta hydrolase fold CCNA_01288 PF07690 Major Facilitator Superfamily CCNA_01289 PF04241 Protein of unknown function (DUF423) CCNA_01295 PF03741 Integral membrane protein TerC family CCNA_01297 PF08032 RNA 2'-O ribose methyltransferase substrate binding CCNA_01297 PF00588 SpoU rRNA Methylase family CCNA_01298 PF03143 Elongation factor Tu C-terminal domain CCNA_01298 PF00009 Elongation factor Tu GTP binding domain CCNA_01298 PF03144 Elongation factor Tu domain 2 CCNA_01300 PF02634 FdhD/NarQ family CCNA_01301 PF00384 Molybdopterin oxidoreductase CCNA_01305 PF00338 Ribosomal protein S10p/S20e CCNA_01306 PF00297 Ribosomal protein L3 CCNA_01307 PF00573 Ribosomal protein L4/L1 family CCNA_01308 PF00276 Ribosomal protein L23 CCNA_01309 PF00181 Ribosomal Proteins L2, RNA binding domain CCNA_01309 PF03947 Ribosomal Proteins L2, C-terminal domain CCNA_01310 PF00203 Ribosomal protein S19 CCNA_01311 PF00237 Ribosomal protein L22p/L17e CCNA_01312 PF00189 Ribosomal protein S3, C-terminal domain CCNA_01312 PF07650 KH domain CCNA_01313 PF00252 Ribosomal protein L16p/L10e CCNA_01314 PF00831 Ribosomal L29 protein CCNA_01315 PF00366 Ribosomal protein S17 CCNA_01316 PF00238 Ribosomal protein L14p/L23e CCNA_01317 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CCNA_01317 PF00467 KOW motif CCNA_01318 PF00281 Ribosomal protein L5 CCNA_01318 PF00673 ribosomal L5P family C-terminus CCNA_01319 PF00253 Ribosomal protein S14p/S29e CCNA_01320 PF00410 Ribosomal protein S8 CCNA_01321 PF00347 Ribosomal protein L6 CCNA_01322 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CCNA_01323 PF00333 Ribosomal protein S5, N-terminal domain CCNA_01323 PF03719 Ribosomal protein S5, C-terminal domain CCNA_01324 PF00327 Ribosomal protein L30p/L7e CCNA_01325 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CCNA_01326 PF00344 SecY translocase CCNA_01328 PF00416 Ribosomal protein S13/S18 CCNA_01329 PF00411 Ribosomal protein S11 CCNA_01330 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CCNA_01330 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CCNA_01330 PF01000 RNA polymerase Rpb3/RpoA insert domain CCNA_01332 PF01196 Ribosomal protein L17 CCNA_01335 PF00005 ABC transporter CCNA_01337 PF00732 GMC oxidoreductase CCNA_01337 PF05199 GMC oxidoreductase CCNA_01340 PF07690 Major Facilitator Superfamily CCNA_01341 PF13180 PDZ domain CCNA_01342 PF12002 MgsA AAA+ ATPase C terminal CCNA_01342 PF00004 ATPase family associated with various cellular activities (AAA) CCNA_01342 PF16193 AAA C-terminal domain CCNA_01343 PF00849 RNA pseudouridylate synthase CCNA_01343 PF01479 S4 domain CCNA_01349 PF13340 Putative transposase of IS4/5 family (DUF4096) CCNA_01350 PF01609 Transposase DDE domain CCNA_01351 PF00072 Response regulator receiver domain CCNA_01351 PF00486 Transcriptional regulatory protein, C terminal CCNA_01352 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01353 PF02333 Phytase CCNA_01354 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CCNA_01354 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CCNA_01356 PF00294 pfkB family carbohydrate kinase CCNA_01357 PF00205 Thiamine pyrophosphate enzyme, central domain CCNA_01357 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CCNA_01357 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CCNA_01358 PF01261 Xylose isomerase-like TIM barrel CCNA_01359 PF04962 KduI/IolB family CCNA_01360 PF00171 Aldehyde dehydrogenase family CCNA_01362 PF00486 Transcriptional regulatory protein, C terminal CCNA_01362 PF00072 Response regulator receiver domain CCNA_01363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01364 PF01207 Dihydrouridine synthase (Dus) CCNA_01367 PF02277 Phosphoribosyltransferase CCNA_01368 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_01368 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_01368 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_01369 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_01369 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_01369 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_01372 PF03641 Possible lysine decarboxylase CCNA_01374 PF00664 ABC transporter transmembrane region CCNA_01374 PF00005 ABC transporter CCNA_01375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CCNA_01376 PF02798 Glutathione S-transferase, N-terminal domain CCNA_01381 PF10458 Valyl tRNA synthetase tRNA binding arm CCNA_01381 PF00133 tRNA synthetases class I (I, L, M and V) CCNA_01381 PF08264 Anticodon-binding domain of tRNA CCNA_01382 PF00501 AMP-binding enzyme CCNA_01382 PF13193 AMP-binding enzyme C-terminal domain CCNA_01384 PF01425 Amidase CCNA_01385 PF01728 FtsJ-like methyltransferase CCNA_01385 PF01479 S4 domain CCNA_01387 PF05958 tRNA (Uracil-5-)-methyltransferase CCNA_01388 PF01209 ubiE/COQ5 methyltransferase family CCNA_01390 PF08281 Sigma-70, region 4 CCNA_01390 PF04542 Sigma-70 region 2 CCNA_01391 PF04055 Radical SAM superfamily CCNA_01393 PF01464 Transglycosylase SLT domain CCNA_01394 PF03167 Uracil DNA glycosylase superfamily CCNA_01397 PF08544 GHMP kinases C terminal CCNA_01398 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CCNA_01399 PF00909 Ammonium Transporter Family CCNA_01400 PF00543 Nitrogen regulatory protein P-II CCNA_01403 PF02091 Glycyl-tRNA synthetase alpha subunit CCNA_01404 PF05746 DALR anticodon binding domain CCNA_01404 PF02092 Glycyl-tRNA synthetase beta subunit CCNA_01409 PF00490 Delta-aminolevulinic acid dehydratase CCNA_01410 PF00743 Flavin-binding monooxygenase-like CCNA_01412 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_01412 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_01412 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_01413 PF00300 Histidine phosphatase superfamily (branch 1) CCNA_01414 PF00378 Enoyl-CoA hydratase/isomerase CCNA_01416 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CCNA_01416 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CCNA_01417 PF00155 Aminotransferase class I and II CCNA_01418 PF05443 ROS/MUCR transcriptional regulator protein CCNA_01419 PF00464 Serine hydroxymethyltransferase CCNA_01420 PF03477 ATP cone domain CCNA_01421 PF00885 6,7-dimethyl-8-ribityllumazine synthase CCNA_01422 PF01029 NusB family CCNA_01423 PF02769 AIR synthase related protein, C-terminal domain CCNA_01423 PF00586 AIR synthase related protein, N-terminal domain CCNA_01425 PF03030 Inorganic H+ pyrophosphatase CCNA_01426 PF00072 Response regulator receiver domain CCNA_01426 PF01339 CheB methylesterase CCNA_01431 PF02504 Fatty acid synthesis protein CCNA_01432 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CCNA_01432 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CCNA_01433 PF00216 Bacterial DNA-binding protein CCNA_01434 PF13411 MerR HTH family regulatory protein CCNA_01438 PF02628 Cytochrome oxidase assembly protein CCNA_01440 PF00572 Ribosomal protein L13 CCNA_01441 PF00380 Ribosomal protein S9/S16 CCNA_01442 PF01118 Semialdehyde dehydrogenase, NAD binding domain CCNA_01444 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CCNA_01444 PF00561 alpha/beta hydrolase fold CCNA_01446 PF00155 Aminotransferase class I and II CCNA_01447 PF03447 Homoserine dehydrogenase, NAD binding domain CCNA_01447 PF01842 ACT domain CCNA_01447 PF00742 Homoserine dehydrogenase CCNA_01448 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CCNA_01449 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CCNA_01450 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CCNA_01450 PF01368 DHH family CCNA_01450 PF17768 RecJ OB domain CCNA_01450 PF02272 DHHA1 domain CCNA_01451 PF00313 'Cold-shock' DNA-binding domain CCNA_01462 PF01070 FMN-dependent dehydrogenase CCNA_01463 PF00793 DAHP synthetase I family CCNA_01467 PF00115 Cytochrome C and Quinol oxidase polypeptide I CCNA_01470 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CCNA_01470 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CCNA_01471 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CCNA_01471 PF12801 4Fe-4S binding domain CCNA_01471 PF13746 4Fe-4S dicluster domain CCNA_01473 PF00403 Heavy-metal-associated domain CCNA_01474 PF03597 Cytochrome oxidase maturation protein cbb3-type CCNA_01475 PF03922 OmpW family CCNA_01477 PF04055 Radical SAM superfamily CCNA_01485 PF01263 Aldose 1-epimerase CCNA_01487 PF00392 Bacterial regulatory proteins, gntR family CCNA_01487 PF07729 FCD domain CCNA_01488 PF00920 Dehydratase family CCNA_01489 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CCNA_01491 PF01053 Cys/Met metabolism PLP-dependent enzyme CCNA_01492 PF00581 Rhodanese-like domain CCNA_01493 PF00291 Pyridoxal-phosphate dependent enzyme CCNA_01495 PF00875 DNA photolyase CCNA_01495 PF03441 FAD binding domain of DNA photolyase CCNA_01496 PF00793 DAHP synthetase I family CCNA_01497 PF01370 NAD dependent epimerase/dehydratase family CCNA_01499 PF02803 Thiolase, C-terminal domain CCNA_01499 PF00108 Thiolase, N-terminal domain CCNA_01502 PF05661 Protein of unknown function (DUF808) CCNA_01504 PF17191 RecG wedge domain CCNA_01504 PF00270 DEAD/DEAH box helicase CCNA_01504 PF00271 Helicase conserved C-terminal domain CCNA_01506 PF00005 ABC transporter CCNA_01507 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_01508 PF00497 Bacterial extracellular solute-binding proteins, family 3 CCNA_01509 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CCNA_01509 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CCNA_01511 PF04116 Fatty acid hydroxylase superfamily CCNA_01513 PF03480 Bacterial extracellular solute-binding protein, family 7 CCNA_01515 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CCNA_01516 PF00881 Nitroreductase family CCNA_01522 PF17862 AAA+ lid domain CCNA_01522 PF01434 Peptidase family M41 CCNA_01522 PF00004 ATPase family associated with various cellular activities (AAA) CCNA_01525 PF07378 Flagellar protein FlbT CCNA_01526 PF07309 Flagellar protein FlaF CCNA_01527 PF00669 Bacterial flagellin N-terminal helical region CCNA_01527 PF00700 Bacterial flagellin C-terminal helical region CCNA_01528 PF00669 Bacterial flagellin N-terminal helical region CCNA_01528 PF00700 Bacterial flagellin C-terminal helical region CCNA_01530 PF00669 Bacterial flagellin N-terminal helical region CCNA_01530 PF00700 Bacterial flagellin C-terminal helical region CCNA_01535 PF00436 Single-strand binding protein family CCNA_01538 PF00391 PEP-utilising enzyme, mobile domain CCNA_01538 PF02896 PEP-utilising enzyme, TIM barrel domain CCNA_01538 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CCNA_01539 PF17954 Quercetinase C-terminal cupin domain CCNA_01539 PF02678 Pirin CCNA_01541 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_01541 PF03466 LysR substrate binding domain CCNA_01543 PF00012 Hsp70 protein CCNA_01546 PF00271 Helicase conserved C-terminal domain CCNA_01546 PF00270 DEAD/DEAH box helicase CCNA_01547 PF09334 tRNA synthetases class I (M) CCNA_01549 PF00009 Elongation factor Tu GTP binding domain CCNA_01550 PF01507 Phosphoadenosine phosphosulfate reductase family CCNA_01553 PF02397 Bacterial sugar transferase CCNA_01554 PF08125 Mannitol dehydrogenase C-terminal domain CCNA_01554 PF01232 Mannitol dehydrogenase Rossmann domain CCNA_01555 PF08666 SAF domain CCNA_01555 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CCNA_01556 PF00356 Bacterial regulatory proteins, lacI family CCNA_01557 PF02614 Glucuronate isomerase CCNA_01558 PF04962 KduI/IolB family CCNA_01560 PF00311 Phosphoenolpyruvate carboxylase CCNA_01563 PF00294 pfkB family carbohydrate kinase CCNA_01567 PF00561 alpha/beta hydrolase fold CCNA_01568 PF00999 Sodium/hydrogen exchanger family CCNA_01571 PF03960 ArsC family CCNA_01574 PF03358 NADPH-dependent FMN reductase CCNA_01575 PF07995 Glucose / Sorbosone dehydrogenase CCNA_01576 PF07690 Major Facilitator Superfamily CCNA_01578 PF03965 Penicillinase repressor CCNA_01579 PF03734 L,D-transpeptidase catalytic domain CCNA_01579 PF01471 Putative peptidoglycan binding domain CCNA_01580 PF05951 Bacterial protein of unknown function (DUF882) CCNA_01583 PF12849 PBP superfamily domain CCNA_01584 PF00905 Penicillin binding protein transpeptidase domain CCNA_01584 PF00912 Transglycosylase CCNA_01585 PF07715 TonB-dependent Receptor Plug Domain CCNA_01585 PF00593 TonB dependent receptor CCNA_01586 PF00005 ABC transporter CCNA_01590 PF00533 BRCA1 C Terminus (BRCT) domain CCNA_01590 PF01653 NAD-dependent DNA ligase adenylation domain CCNA_01590 PF03120 NAD-dependent DNA ligase OB-fold domain CCNA_01591 PF14579 Helix-hairpin-helix motif CCNA_01591 PF02811 PHP domain CCNA_01591 PF00929 Exonuclease CCNA_01591 PF01336 OB-fold nucleic acid binding domain CCNA_01591 PF11490 DNA polymerase III polC-type N-terminus II CCNA_01591 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CCNA_01591 PF07733 Bacterial DNA polymerase III alpha NTPase domain CCNA_01593 PF01321 Creatinase/Prolidase N-terminal domain CCNA_01593 PF00557 Metallopeptidase family M24 CCNA_01596 PF13361 UvrD-like helicase C-terminal domain CCNA_01596 PF00580 UvrD/REP helicase N-terminal domain CCNA_01598 PF04820 Tryptophan halogenase CCNA_01602 PF00043 Glutathione S-transferase, C-terminal domain CCNA_01602 PF13417 Glutathione S-transferase, N-terminal domain CCNA_01603 PF00155 Aminotransferase class I and II CCNA_01606 PF10609 NUBPL iron-transfer P-loop NTPase CCNA_01608 PF00440 Bacterial regulatory proteins, tetR family CCNA_01608 PF17934 Tetracyclin repressor-like, C-terminal domain CCNA_01609 PF00753 Metallo-beta-lactamase superfamily CCNA_01609 PF14863 Alkyl sulfatase dimerisation CCNA_01609 PF14864 Alkyl sulfatase C-terminal CCNA_01610 PF08502 LeuA allosteric (dimerisation) domain CCNA_01610 PF00682 HMGL-like CCNA_01613 PF04085 rod shape-determining protein MreC CCNA_01615 PF00905 Penicillin binding protein transpeptidase domain CCNA_01615 PF03717 Penicillin-binding Protein dimerisation domain CCNA_01616 PF01098 Cell cycle protein CCNA_01618 PF03167 Uracil DNA glycosylase superfamily CCNA_01620 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CCNA_01621 PF01192 RNA polymerase Rpb6 CCNA_01622 PF04607 Region found in RelA / SpoT proteins CCNA_01622 PF13291 ACT domain CCNA_01622 PF02824 TGS domain CCNA_01624 PF00156 Phosphoribosyl transferase domain CCNA_01626 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CCNA_01627 PF01648 4'-phosphopantetheinyl transferase superfamily CCNA_01629 PF10502 Signal peptidase, peptidase S26 CCNA_01630 PF00035 Double-stranded RNA binding motif CCNA_01630 PF14622 Ribonuclease-III-like CCNA_01633 PF01926 50S ribosome-binding GTPase CCNA_01633 PF07650 KH domain CCNA_01634 PF00797 N-acetyltransferase CCNA_01635 PF11967 Recombination protein O N terminal CCNA_01635 PF02565 Recombination protein O C terminal CCNA_01636 PF16655 PhoD-like phosphatase, N-terminal domain CCNA_01636 PF09423 PhoD-like phosphatase CCNA_01637 PF00521 DNA gyrase/topoisomerase IV, subunit A CCNA_01637 PF03989 DNA gyrase C-terminal domain, beta-propeller CCNA_01639 PF11954 Domain of unknown function (DUF3471) CCNA_01639 PF00144 Beta-lactamase CCNA_01640 PF08659 KR domain CCNA_01640 PF00550 Phosphopantetheine attachment site CCNA_01640 PF14765 Polyketide synthase dehydratase CCNA_01640 PF16197 Ketoacyl-synthetase C-terminal extension CCNA_01640 PF02801 Beta-ketoacyl synthase, C-terminal domain CCNA_01640 PF00109 Beta-ketoacyl synthase, N-terminal domain CCNA_01640 PF00698 Acyl transferase domain CCNA_01640 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_01641 PF03060 Nitronate monooxygenase CCNA_01643 PF04377 Arginine-tRNA-protein transferase, C terminus CCNA_01643 PF04376 Arginine-tRNA-protein transferase, N terminus CCNA_01644 PF00691 OmpA family CCNA_01644 PF13677 Membrane MotB of proton-channel complex MotA/MotB CCNA_01645 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CCNA_01645 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CCNA_01647 PF00155 Aminotransferase class I and II CCNA_01648 PF00202 Aminotransferase class-III CCNA_01650 PF00080 Copper/zinc superoxide dismutase (SODC) CCNA_01651 PF00521 DNA gyrase/topoisomerase IV, subunit A CCNA_01651 PF03989 DNA gyrase C-terminal domain, beta-propeller CCNA_01652 PF01467 Cytidylyltransferase-like CCNA_01653 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CCNA_01654 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CCNA_01655 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CCNA_01658 PF02547 Queuosine biosynthesis protein CCNA_01659 PF01702 Queuine tRNA-ribosyltransferase CCNA_01663 PF03814 Potassium-transporting ATPase A subunit CCNA_01665 PF02669 K+-transporting ATPase, c chain CCNA_01666 PF02702 Osmosensitive K+ channel His kinase sensor domain CCNA_01666 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01666 PF13493 Domain of unknown function (DUF4118) CCNA_01666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01666 PF13492 GAF domain CCNA_01667 PF00486 Transcriptional regulatory protein, C terminal CCNA_01667 PF00072 Response regulator receiver domain CCNA_01668 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_01669 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_01670 PF00005 ABC transporter CCNA_01670 PF17850 CysA C-terminal regulatory domain CCNA_01674 PF14403 Circularly permuted ATP-grasp type 2 CCNA_01677 PF07687 Peptidase dimerisation domain CCNA_01677 PF01546 Peptidase family M20/M25/M40 CCNA_01678 PF04958 Arginine N-succinyltransferase beta subunit CCNA_01679 PF00171 Aldehyde dehydrogenase family CCNA_01680 PF04996 Succinylarginine dihydrolase CCNA_01684 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CCNA_01686 PF02541 Ppx/GppA phosphatase family CCNA_01687 PF01728 FtsJ-like methyltransferase CCNA_01689 PF00571 CBS domain CCNA_01689 PF00478 IMP dehydrogenase / GMP reductase domain CCNA_01691 PF01189 16S rRNA methyltransferase RsmB/F CCNA_01691 PF01029 NusB family CCNA_01692 PF02540 NAD synthase CCNA_01692 PF00958 GMP synthase C terminal domain CCNA_01692 PF00117 Glutamine amidotransferase class-I CCNA_01693 PF03466 LysR substrate binding domain CCNA_01693 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_01694 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CCNA_01694 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CCNA_01695 PF07715 TonB-dependent Receptor Plug Domain CCNA_01695 PF00593 TonB dependent receptor CCNA_01696 PF03806 AbgT putative transporter family CCNA_01699 PF00356 Bacterial regulatory proteins, lacI family CCNA_01700 PF03825 Nucleoside H+ symporter CCNA_01702 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CCNA_01702 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CCNA_01704 PF00034 Cytochrome c CCNA_01706 PF00732 GMC oxidoreductase CCNA_01706 PF05199 GMC oxidoreductase CCNA_01710 PF00732 GMC oxidoreductase CCNA_01710 PF05199 GMC oxidoreductase CCNA_01712 PF03965 Penicillinase repressor CCNA_01714 PF03960 ArsC family CCNA_01715 PF13419 Haloacid dehalogenase-like hydrolase CCNA_01718 PF08281 Sigma-70, region 4 CCNA_01718 PF04542 Sigma-70 region 2 CCNA_01721 PF04542 Sigma-70 region 2 CCNA_01721 PF08281 Sigma-70, region 4 CCNA_01723 PF02548 Ketopantoate hydroxymethyltransferase CCNA_01726 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CCNA_01726 PF01926 50S ribosome-binding GTPase CCNA_01727 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_01727 PF13426 PAS domain CCNA_01727 PF08447 PAS fold CCNA_01729 PF13593 SBF-like CPA transporter family (DUF4137) CCNA_01730 PF00156 Phosphoribosyl transferase domain CCNA_01730 PF13537 Glutamine amidotransferase domain CCNA_01732 PF06745 KaiC CCNA_01732 PF18073 Rubredoxin metal binding domain CCNA_01733 PF00842 Alanine racemase, C-terminal domain CCNA_01733 PF01168 Alanine racemase, N-terminal domain CCNA_01734 PF01914 MarC family integral membrane protein CCNA_01736 PF00440 Bacterial regulatory proteins, tetR family CCNA_01736 PF17925 Tetracyclin repressor-like, C-terminal domain CCNA_01737 PF00772 DnaB-like helicase N terminal domain CCNA_01737 PF03796 DnaB-like helicase C terminal domain CCNA_01738 PF00593 TonB dependent receptor CCNA_01738 PF07715 TonB-dependent Receptor Plug Domain CCNA_01739 PF03948 Ribosomal protein L9, C-terminal domain CCNA_01739 PF01281 Ribosomal protein L9, N-terminal domain CCNA_01740 PF01084 Ribosomal protein S18 CCNA_01741 PF01250 Ribosomal protein S6 CCNA_01745 PF00578 AhpC/TSA family CCNA_01746 PF00698 Acyl transferase domain CCNA_01749 PF00550 Phosphopantetheine attachment site CCNA_01750 PF02801 Beta-ketoacyl synthase, C-terminal domain CCNA_01750 PF00109 Beta-ketoacyl synthase, N-terminal domain CCNA_01751 PF02618 YceG-like family CCNA_01752 PF03755 YicC-like family, N-terminal region CCNA_01752 PF08340 Domain of unknown function (DUF1732) CCNA_01753 PF00625 Guanylate kinase CCNA_01755 PF13581 Histidine kinase-like ATPase domain CCNA_01755 PF07536 HWE histidine kinase CCNA_01755 PF13426 PAS domain CCNA_01757 PF00398 Ribosomal RNA adenine dimethylase CCNA_01758 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CCNA_01759 PF09312 SurA N-terminal domain CCNA_01759 PF00639 PPIC-type PPIASE domain CCNA_01763 PF02789 Cytosol aminopeptidase family, N-terminal domain CCNA_01763 PF00883 Cytosol aminopeptidase family, catalytic domain CCNA_01769 PF12848 ABC transporter CCNA_01769 PF00005 ABC transporter CCNA_01770 PF00334 Nucleoside diphosphate kinase CCNA_01773 PF09335 SNARE associated Golgi protein CCNA_01774 PF00551 Formyl transferase CCNA_01775 PF00586 AIR synthase related protein, N-terminal domain CCNA_01775 PF02769 AIR synthase related protein, C-terminal domain CCNA_01776 PF00570 HRDC domain CCNA_01776 PF01612 3'-5' exonuclease CCNA_01777 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01777 PF00072 Response regulator receiver domain CCNA_01777 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01777 PF01627 Hpt domain CCNA_01777 PF00989 PAS fold CCNA_01777 PF00497 Bacterial extracellular solute-binding proteins, family 3 CCNA_01782 PF17941 Polyphosphate kinase C-terminal domain 1 CCNA_01782 PF13090 Polyphosphate kinase C-terminal domain 2 CCNA_01782 PF02503 Polyphosphate kinase middle domain CCNA_01782 PF13089 Polyphosphate kinase N-terminal domain CCNA_01786 PF12787 EcsC protein family CCNA_01791 PF06418 CTP synthase N-terminus CCNA_01791 PF00117 Glutamine amidotransferase class-I CCNA_01792 PF01783 Ribosomal L32p protein family CCNA_01794 PF00378 Enoyl-CoA hydratase/isomerase CCNA_01795 PF03952 Enolase, N-terminal domain CCNA_01795 PF00113 Enolase, C-terminal TIM barrel domain CCNA_01799 PF00676 Dehydrogenase E1 component CCNA_01800 PF02780 Transketolase, C-terminal domain CCNA_01800 PF00364 Biotin-requiring enzyme CCNA_01800 PF02779 Transketolase, pyrimidine binding domain CCNA_01803 PF00364 Biotin-requiring enzyme CCNA_01803 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CCNA_01803 PF02817 e3 binding domain CCNA_01804 PF00255 Glutathione peroxidase CCNA_01805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CCNA_01805 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_01807 PF13193 AMP-binding enzyme C-terminal domain CCNA_01807 PF01553 Acyltransferase CCNA_01807 PF00501 AMP-binding enzyme CCNA_01808 PF12146 Serine aminopeptidase, S33 CCNA_01809 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CCNA_01809 PF04055 Radical SAM superfamily CCNA_01810 PF03364 Polyketide cyclase / dehydrase and lipid transport CCNA_01811 PF02464 Competence-damaged protein CCNA_01811 PF18146 Damage-inducible protein CinA KH domain CCNA_01811 PF00994 Probable molybdopterin binding domain CCNA_01812 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CCNA_01812 PF02542 YgbB family CCNA_01813 PF01207 Dihydrouridine synthase (Dus) CCNA_01814 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01814 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01814 PF00989 PAS fold CCNA_01815 PF00158 Sigma-54 interaction domain CCNA_01815 PF00072 Response regulator receiver domain CCNA_01815 PF02954 Bacterial regulatory protein, Fis family CCNA_01816 PF00989 PAS fold CCNA_01816 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01816 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01816 PF00672 HAMP domain CCNA_01817 PF00158 Sigma-54 interaction domain CCNA_01817 PF02954 Bacterial regulatory protein, Fis family CCNA_01817 PF00072 Response regulator receiver domain CCNA_01818 PF01063 Amino-transferase class IV CCNA_01819 PF17209 Hfq protein CCNA_01820 PF01926 50S ribosome-binding GTPase CCNA_01820 PF16360 GTP-binding GTPase Middle Region CCNA_01820 PF13167 GTP-binding GTPase N-terminal CCNA_01821 PF03819 MazG nucleotide pyrophosphohydrolase domain CCNA_01826 PF00593 TonB dependent receptor CCNA_01826 PF07715 TonB-dependent Receptor Plug Domain CCNA_01827 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CCNA_01827 PF07685 CobB/CobQ-like glutamine amidotransferase domain CCNA_01829 PF00356 Bacterial regulatory proteins, lacI family CCNA_01831 PF04820 Tryptophan halogenase CCNA_01832 PF14310 Fibronectin type III-like domain CCNA_01832 PF01915 Glycosyl hydrolase family 3 C-terminal domain CCNA_01832 PF00933 Glycosyl hydrolase family 3 N terminal domain CCNA_01835 PF00005 ABC transporter CCNA_01836 PF13472 GDSL-like Lipase/Acylhydrolase family CCNA_01837 PF00665 Integrase core domain CCNA_01837 PF13936 Helix-turn-helix domain CCNA_01840 PF01381 Helix-turn-helix CCNA_01840 PF06114 IrrE N-terminal-like domain CCNA_01840 PF09856 Predicted transcriptional regulator (DUF2083) CCNA_01841 PF00463 Isocitrate lyase family CCNA_01843 PF01274 Malate synthase CCNA_01844 PF02899 Phage integrase, N-terminal SAM-like domain CCNA_01844 PF00589 Phage integrase family CCNA_01845 PF00072 Response regulator receiver domain CCNA_01846 PF00512 His Kinase A (phospho-acceptor) domain CCNA_01846 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_01848 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CCNA_01849 PF00510 Cytochrome c oxidase subunit III CCNA_01850 PF00115 Cytochrome C and Quinol oxidase polypeptide I CCNA_01851 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CCNA_01851 PF06481 COX Aromatic Rich Motif CCNA_01852 PF07690 Major Facilitator Superfamily CCNA_01855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CCNA_01855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CCNA_01856 PF07715 TonB-dependent Receptor Plug Domain CCNA_01856 PF00593 TonB dependent receptor CCNA_01858 PF01965 DJ-1/PfpI family CCNA_01863 PF02321 Outer membrane efflux protein CCNA_01866 PF00873 AcrB/AcrD/AcrF family CCNA_01870 PF00480 ROK family CCNA_01875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_01875 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_01875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_01878 PF00501 AMP-binding enzyme CCNA_01878 PF13193 AMP-binding enzyme C-terminal domain CCNA_01879 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CCNA_01879 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_01880 PF00106 short chain dehydrogenase CCNA_01883 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_01883 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_01883 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_01884 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_01884 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_01884 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_01885 PF00106 short chain dehydrogenase CCNA_01886 PF07715 TonB-dependent Receptor Plug Domain CCNA_01886 PF00593 TonB dependent receptor CCNA_01889 PF13193 AMP-binding enzyme C-terminal domain CCNA_01889 PF00501 AMP-binding enzyme CCNA_01891 PF00378 Enoyl-CoA hydratase/isomerase CCNA_01893 PF13577 SnoaL-like domain CCNA_01895 PF07690 Major Facilitator Superfamily CCNA_01898 PF01026 TatD related DNase CCNA_01899 PF09115 DNA polymerase III, delta subunit, C terminal CCNA_01900 PF02223 Thymidylate kinase CCNA_01901 PF03330 Lytic transglycolase CCNA_01901 PF05036 Sporulation related domain CCNA_01902 PF01402 Ribbon-helix-helix protein, copG family CCNA_01902 PF08753 NikR C terminal nickel binding domain CCNA_01905 PF02785 Biotin carboxylase C-terminal domain CCNA_01905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CCNA_01905 PF00289 Biotin carboxylase, N-terminal domain CCNA_01905 PF18140 Propionyl-coenzyme A carboxylase BT domain CCNA_01905 PF00364 Biotin-requiring enzyme CCNA_01906 PF01425 Amidase CCNA_01907 PF00005 ABC transporter CCNA_01908 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_01913 PF01638 HxlR-like helix-turn-helix CCNA_01914 PF05175 Methyltransferase small domain CCNA_01914 PF08468 Methyltransferase small domain N-terminal CCNA_01915 PF01479 S4 domain CCNA_01915 PF00849 RNA pseudouridylate synthase CCNA_01917 PF02515 CoA-transferase family III CCNA_01920 PF02559 CarD-like/TRCF domain CCNA_01920 PF17757 UvrB interaction domain CCNA_01920 PF00271 Helicase conserved C-terminal domain CCNA_01920 PF00270 DEAD/DEAH box helicase CCNA_01920 PF03461 TRCF domain CCNA_01922 PF01209 ubiE/COQ5 methyltransferase family CCNA_01923 PF00271 Helicase conserved C-terminal domain CCNA_01923 PF00270 DEAD/DEAH box helicase CCNA_01925 PF00171 Aldehyde dehydrogenase family CCNA_01926 PF00990 Diguanylate cyclase, GGDEF domain CCNA_01927 PF00378 Enoyl-CoA hydratase/isomerase CCNA_01931 PF00440 Bacterial regulatory proteins, tetR family CCNA_01934 PF01521 Iron-sulphur cluster biosynthesis CCNA_01935 PF01883 Iron-sulfur cluster assembly protein CCNA_01936 PF00266 Aminotransferase class-V CCNA_01937 PF01458 Uncharacterized protein family (UPF0051) CCNA_01938 PF00005 ABC transporter CCNA_01940 PF01458 Uncharacterized protein family (UPF0051) CCNA_01941 PF00266 Aminotransferase class-V CCNA_01942 PF02082 Transcriptional regulator CCNA_01943 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CCNA_01945 PF03702 Anhydro-N-acetylmuramic acid kinase CCNA_01946 PF00579 tRNA synthetases class I (W and Y) CCNA_01947 PF00578 AhpC/TSA family CCNA_01948 PF08525 Opacity-associated protein A N-terminal motif CCNA_01948 PF01551 Peptidase family M23 CCNA_01948 PF01476 LysM domain CCNA_01950 PF03462 PCRF domain CCNA_01950 PF00472 RF-1 domain CCNA_01951 PF00905 Penicillin binding protein transpeptidase domain CCNA_01951 PF00912 Transglycosylase CCNA_01951 PF17092 Penicillin-binding protein OB-like domain CCNA_01952 PF01520 N-acetylmuramoyl-L-alanine amidase CCNA_01954 PF00575 S1 RNA binding domain CCNA_01954 PF10150 Ribonuclease E/G family CCNA_01954 PF12111 Polyribonucleotide phosphorylase C terminal CCNA_01957 PF05690 Thiazole biosynthesis protein ThiG CCNA_01958 PF02597 ThiS family CCNA_01958 PF05690 Thiazole biosynthesis protein ThiG CCNA_01959 PF01220 Dehydroquinase class II CCNA_01960 PF00364 Biotin-requiring enzyme CCNA_01961 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CCNA_01961 PF00289 Biotin carboxylase, N-terminal domain CCNA_01961 PF02785 Biotin carboxylase C-terminal domain CCNA_01962 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CCNA_01966 PF02867 Ribonucleotide reductase, barrel domain CCNA_01966 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CCNA_01969 PF00152 tRNA synthetases class II (D, K and N) CCNA_01969 PF02938 GAD domain CCNA_01969 PF01336 OB-fold nucleic acid binding domain CCNA_01970 PF00121 Triosephosphate isomerase CCNA_01971 PF13145 PPIC-type PPIASE domain CCNA_01972 PF00425 chorismate binding enzyme CCNA_01972 PF04715 Anthranilate synthase component I, N terminal region CCNA_01974 PF00117 Glutamine amidotransferase class-I CCNA_01975 PF02885 Glycosyl transferase family, helical bundle domain CCNA_01975 PF00591 Glycosyl transferase family, a/b domain CCNA_01976 PF00218 Indole-3-glycerol phosphate synthase CCNA_01978 PF08241 Methyltransferase domain CCNA_01979 PF00717 Peptidase S24-like CCNA_01979 PF01726 LexA DNA binding domain CCNA_01981 PF03772 Competence protein CCNA_01981 PF00753 Metallo-beta-lactamase superfamily CCNA_01982 PF00749 tRNA synthetases class I (E and Q), catalytic domain CCNA_01983 PF00285 Citrate synthase, C-terminal domain CCNA_01986 PF02684 Lipid-A-disaccharide synthetase CCNA_01987 PF06230 LpxI C-terminal domain CCNA_01987 PF17930 LpxI N-terminal domain CCNA_01988 PF00132 Bacterial transferase hexapeptide (six repeats) CCNA_01988 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CCNA_01989 PF07977 FabA-like domain CCNA_01990 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CCNA_01990 PF00132 Bacterial transferase hexapeptide (six repeats) CCNA_01992 PF01103 Surface antigen CCNA_01992 PF07244 Surface antigen variable number repeat CCNA_01993 PF02163 Peptidase family M50 CCNA_01993 PF13180 PDZ domain CCNA_01994 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CCNA_01994 PF13288 DXP reductoisomerase C-terminal domain CCNA_01994 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CCNA_01996 PF01255 Putative undecaprenyl diphosphate synthase CCNA_01997 PF01765 Ribosome recycling factor CCNA_01998 PF00696 Amino acid kinase family CCNA_01999 PF00889 Elongation factor TS CCNA_02000 PF00318 Ribosomal protein S2 CCNA_02003 PF07733 Bacterial DNA polymerase III alpha NTPase domain CCNA_02003 PF14579 Helix-hairpin-helix motif CCNA_02003 PF02811 PHP domain CCNA_02003 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CCNA_02005 PF01156 Inosine-uridine preferring nucleoside hydrolase CCNA_02006 PF00005 ABC transporter CCNA_02007 PF12704 MacB-like periplasmic core domain CCNA_02007 PF02687 FtsX-like permease family CCNA_02008 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CCNA_02008 PF03129 Anticodon binding domain CCNA_02012 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CCNA_02012 PF17770 Ribonuclease J C-terminal domain CCNA_02012 PF12706 Beta-lactamase superfamily domain CCNA_02013 PF03309 Type III pantothenate kinase CCNA_02014 PF03099 Biotin/lipoate A/B protein ligase family CCNA_02014 PF02237 Biotin protein ligase C terminal domain CCNA_02015 PF00361 Proton-conducting membrane transporter CCNA_02016 PF00361 Proton-conducting membrane transporter CCNA_02016 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CCNA_02017 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CCNA_02017 PF00361 Proton-conducting membrane transporter CCNA_02018 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CCNA_02019 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CCNA_02020 PF12838 4Fe-4S dicluster domain CCNA_02022 PF00146 NADH dehydrogenase CCNA_02023 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CCNA_02023 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CCNA_02023 PF00384 Molybdopterin oxidoreductase CCNA_02024 PF10531 SLBB domain CCNA_02024 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CCNA_02024 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CCNA_02029 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CCNA_02031 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CCNA_02032 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CCNA_02033 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CCNA_02034 PF00296 Luciferase-like monooxygenase CCNA_02035 PF00534 Glycosyl transferases group 1 CCNA_02035 PF13439 Glycosyltransferase Family 4 CCNA_02036 PF00216 Bacterial DNA-binding protein CCNA_02037 PF00004 ATPase family associated with various cellular activities (AAA) CCNA_02037 PF05362 Lon protease (S16) C-terminal proteolytic domain CCNA_02037 PF02190 ATP-dependent protease La (LON) substrate-binding domain CCNA_02039 PF10431 C-terminal, D2-small domain, of ClpB protein CCNA_02039 PF06689 ClpX C4-type zinc finger CCNA_02039 PF07724 AAA domain (Cdc48 subfamily) CCNA_02041 PF00574 Clp protease CCNA_02042 PF05697 Bacterial trigger factor protein (TF) CCNA_02042 PF05698 Bacterial trigger factor protein (TF) C-terminus CCNA_02042 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CCNA_02043 PF01256 Carbohydrate kinase CCNA_02043 PF03853 YjeF-related protein N-terminus CCNA_02044 PF00934 PE family CCNA_02044 PF00300 Histidine phosphatase superfamily (branch 1) CCNA_02045 PF02803 Thiolase, C-terminal domain CCNA_02045 PF00108 Thiolase, N-terminal domain CCNA_02046 PF00543 Nitrogen regulatory protein P-II CCNA_02047 PF03951 Glutamine synthetase, beta-Grasp domain CCNA_02047 PF00120 Glutamine synthetase, catalytic domain CCNA_02048 PF07715 TonB-dependent Receptor Plug Domain CCNA_02048 PF00593 TonB dependent receptor CCNA_02050 PF01979 Amidohydrolase family CCNA_02051 PF01979 Amidohydrolase family CCNA_02052 PF00204 DNA gyrase B CCNA_02052 PF01751 Toprim domain CCNA_02052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02052 PF00986 DNA gyrase B subunit, carboxyl terminus CCNA_02054 PF01039 Carboxyl transferase domain CCNA_02055 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CCNA_02059 PF00849 RNA pseudouridylate synthase CCNA_02059 PF01479 S4 domain CCNA_02060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CCNA_02062 PF02463 RecF/RecN/SMC N terminal domain CCNA_02063 PF13525 Outer membrane lipoprotein CCNA_02064 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CCNA_02065 PF00326 Prolyl oligopeptidase family CCNA_02065 PF07676 WD40-like Beta Propeller Repeat CCNA_02065 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CCNA_02068 PF04430 Protein of unknown function (DUF498/DUF598) CCNA_02069 PF02355 Protein export membrane protein CCNA_02069 PF07549 SecD/SecF GG Motif CCNA_02070 PF02355 Protein export membrane protein CCNA_02071 PF02699 Preprotein translocase subunit CCNA_02074 PF00583 Acetyltransferase (GNAT) family CCNA_02075 PF01551 Peptidase family M23 CCNA_02075 PF01476 LysM domain CCNA_02077 PF01975 Survival protein SurE CCNA_02078 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CCNA_02078 PF02403 Seryl-tRNA synthetase N-terminal domain CCNA_02080 PF00902 Sec-independent protein translocase protein (TatC) CCNA_02081 PF02416 mttA/Hcf106 family CCNA_02082 PF02416 mttA/Hcf106 family CCNA_02083 PF04079 Segregation and condensation complex subunit ScpB CCNA_02084 PF02616 Segregation and condensation protein ScpA CCNA_02085 PF00933 Glycosyl hydrolase family 3 N terminal domain CCNA_02086 PF05036 Sporulation related domain CCNA_02087 PF01966 HD domain CCNA_02087 PF13286 Phosphohydrolase-associated domain CCNA_02088 PF01521 Iron-sulphur cluster biosynthesis CCNA_02092 PF01810 LysE type translocator CCNA_02094 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CCNA_02094 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CCNA_02095 PF00107 Zinc-binding dehydrogenase CCNA_02095 PF16884 N-terminal domain of oxidoreductase CCNA_02097 PF13632 Glycosyl transferase family group 2 CCNA_02099 PF01554 MatE CCNA_02101 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CCNA_02109 PF01964 Radical SAM ThiC family CCNA_02109 PF13667 ThiC-associated domain CCNA_02112 PF00291 Pyridoxal-phosphate dependent enzyme CCNA_02113 PF01177 Asp/Glu/Hydantoin racemase CCNA_02118 PF13307 Helicase C-terminal domain CCNA_02118 PF04851 Type III restriction enzyme, res subunit CCNA_02118 PF00929 Exonuclease CCNA_02121 PF00271 Helicase conserved C-terminal domain CCNA_02121 PF08494 DEAD/H associated CCNA_02121 PF00270 DEAD/DEAH box helicase CCNA_02125 PF08238 Sel1 repeat CCNA_02125 PF01471 Putative peptidoglycan binding domain CCNA_02127 PF03706 Lysylphosphatidylglycerol synthase TM region CCNA_02127 PF09924 Uncharacterised conserved protein (DUF2156) CCNA_02128 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_02128 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_02128 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_02129 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_02129 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_02129 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_02130 PF02887 Pyruvate kinase, alpha/beta domain CCNA_02130 PF00224 Pyruvate kinase, barrel domain CCNA_02131 PF14310 Fibronectin type III-like domain CCNA_02131 PF00933 Glycosyl hydrolase family 3 N terminal domain CCNA_02131 PF01915 Glycosyl hydrolase family 3 C-terminal domain CCNA_02132 PF00356 Bacterial regulatory proteins, lacI family CCNA_02133 PF02685 Glucokinase CCNA_02134 PF00920 Dehydratase family CCNA_02135 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CCNA_02136 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CCNA_02136 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CCNA_02140 PF02154 Flagellar motor switch protein FliM CCNA_02140 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CCNA_02141 PF03748 Flagellar basal body-associated protein FliL CCNA_02142 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CCNA_02142 PF00460 Flagella basal body rod protein CCNA_02143 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CCNA_02143 PF00460 Flagella basal body rod protein CCNA_02144 PF13144 Chaperone for flagella basal body P-ring formation CCNA_02145 PF02107 Flagellar L-ring protein CCNA_02149 PF02779 Transketolase, pyrimidine binding domain CCNA_02149 PF02780 Transketolase, C-terminal domain CCNA_02149 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CCNA_02150 PF00348 Polyprenyl synthetase CCNA_02151 PF02609 Exonuclease VII small subunit CCNA_02153 PF00850 Histone deacetylase domain CCNA_02164 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CCNA_02164 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CCNA_02166 PF03167 Uracil DNA glycosylase superfamily CCNA_02170 PF00043 Glutathione S-transferase, C-terminal domain CCNA_02170 PF02798 Glutathione S-transferase, N-terminal domain CCNA_02171 PF07670 Nucleoside recognition CCNA_02171 PF07662 Na+ dependent nucleoside transporter C-terminus CCNA_02171 PF01773 Na+ dependent nucleoside transporter N-terminus CCNA_02173 PF12704 MacB-like periplasmic core domain CCNA_02173 PF00005 ABC transporter CCNA_02173 PF02687 FtsX-like permease family CCNA_02178 PF00106 short chain dehydrogenase CCNA_02180 PF10609 NUBPL iron-transfer P-loop NTPase CCNA_02180 PF01883 Iron-sulfur cluster assembly protein CCNA_02181 PF13419 Haloacid dehalogenase-like hydrolase CCNA_02184 PF02464 Competence-damaged protein CCNA_02184 PF18146 Damage-inducible protein CinA KH domain CCNA_02184 PF00994 Probable molybdopterin binding domain CCNA_02185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CCNA_02185 PF00205 Thiamine pyrophosphate enzyme, central domain CCNA_02185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CCNA_02186 PF10369 Small subunit of acetolactate synthase CCNA_02194 PF10415 Fumarase C C-terminus CCNA_02194 PF00206 Lyase CCNA_02198 PF00348 Polyprenyl synthetase CCNA_02203 PF04264 YceI-like domain CCNA_02204 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CCNA_02204 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CCNA_02208 PF00303 Thymidylate synthase CCNA_02209 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_02209 PF00107 Zinc-binding dehydrogenase CCNA_02210 PF00186 Dihydrofolate reductase CCNA_02213 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CCNA_02213 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_02215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_02215 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_02215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_02220 PF00232 Glycosyl hydrolase family 1 CCNA_02221 PF00809 Pterin binding enzyme CCNA_02221 PF02965 Vitamin B12 dependent methionine synthase, activation domain CCNA_02221 PF02607 B12 binding domain CCNA_02221 PF02574 Homocysteine S-methyltransferase CCNA_02221 PF02310 B12 binding domain CCNA_02222 PF02574 Homocysteine S-methyltransferase CCNA_02222 PF00809 Pterin binding enzyme CCNA_02223 PF00753 Metallo-beta-lactamase superfamily CCNA_02224 PF02219 Methylenetetrahydrofolate reductase CCNA_02225 PF13847 Methyltransferase domain CCNA_02227 PF03466 LysR substrate binding domain CCNA_02227 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_02230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CCNA_02230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CCNA_02231 PF00005 ABC transporter CCNA_02231 PF12848 ABC transporter CCNA_02233 PF10502 Signal peptidase, peptidase S26 CCNA_02237 PF00326 Prolyl oligopeptidase family CCNA_02237 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CCNA_02243 PF07943 Penicillin-binding protein 5, C-terminal domain CCNA_02243 PF00768 D-alanyl-D-alanine carboxypeptidase CCNA_02244 PF00155 Aminotransferase class I and II CCNA_02247 PF02569 Pantoate-beta-alanine ligase CCNA_02250 PF02785 Biotin carboxylase C-terminal domain CCNA_02250 PF00289 Biotin carboxylase, N-terminal domain CCNA_02250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CCNA_02250 PF00364 Biotin-requiring enzyme CCNA_02251 PF00378 Enoyl-CoA hydratase/isomerase CCNA_02252 PF01039 Carboxyl transferase domain CCNA_02253 PF01734 Patatin-like phospholipase CCNA_02253 PF00027 Cyclic nucleotide-binding domain CCNA_02254 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_02254 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_02254 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_02256 PF00571 CBS domain CCNA_02256 PF03448 MgtE intracellular N domain CCNA_02256 PF01769 Divalent cation transporter CCNA_02258 PF03099 Biotin/lipoate A/B protein ligase family CCNA_02260 PF05656 Protein of unknown function (DUF805) CCNA_02261 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CCNA_02261 PF00364 Biotin-requiring enzyme CCNA_02261 PF00289 Biotin carboxylase, N-terminal domain CCNA_02261 PF02785 Biotin carboxylase C-terminal domain CCNA_02261 PF18140 Propionyl-coenzyme A carboxylase BT domain CCNA_02263 PF03928 Haem-degrading CCNA_02264 PF00117 Glutamine amidotransferase class-I CCNA_02265 PF01641 SelR domain CCNA_02269 PF03576 Peptidase family S58 CCNA_02277 PF00593 TonB dependent receptor CCNA_02277 PF07715 TonB-dependent Receptor Plug Domain CCNA_02280 PF03232 Ubiquinone biosynthesis protein COQ7 CCNA_02281 PF01433 Peptidase family M1 domain CCNA_02285 PF01272 Transcription elongation factor, GreA/GreB, C-term CCNA_02285 PF03449 Transcription elongation factor, N-terminal CCNA_02287 PF00440 Bacterial regulatory proteins, tetR family CCNA_02288 PF00749 tRNA synthetases class I (E and Q), catalytic domain CCNA_02292 PF00583 Acetyltransferase (GNAT) family CCNA_02293 PF08534 Redoxin CCNA_02294 PF14698 Argininosuccinate lyase C-terminal CCNA_02294 PF00206 Lyase CCNA_02296 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CCNA_02296 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CCNA_02297 PF00156 Phosphoribosyl transferase domain CCNA_02299 PF00005 ABC transporter CCNA_02306 PF00155 Aminotransferase class I and II CCNA_02307 PF02153 Prephenate dehydrogenase CCNA_02310 PF02018 Carbohydrate binding domain CCNA_02310 PF02927 Cellulase N-terminal ig-like domain CCNA_02310 PF00404 Dockerin type I domain CCNA_02310 PF00759 Glycosyl hydrolase family 9 CCNA_02320 PF00692 dUTPase CCNA_02321 PF01053 Cys/Met metabolism PLP-dependent enzyme CCNA_02322 PF04379 ApaG domain CCNA_02324 PF01430 Hsp33 protein CCNA_02325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CCNA_02325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CCNA_02326 PF00202 Aminotransferase class-III CCNA_02327 PF01061 ABC-2 type transporter CCNA_02329 PF02601 Exonuclease VII, large subunit CCNA_02329 PF13742 OB-fold nucleic acid binding domain CCNA_02332 PF08769 Sporulation initiation factor Spo0A C terminal CCNA_02332 PF00072 Response regulator receiver domain CCNA_02334 PF01381 Helix-turn-helix CCNA_02335 PF00459 Inositol monophosphatase family CCNA_02341 PF00011 Hsp20/alpha crystallin family CCNA_02344 PF00300 Histidine phosphatase superfamily (branch 1) CCNA_02346 PF00571 CBS domain CCNA_02346 PF01380 SIS domain CCNA_02347 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CCNA_02347 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CCNA_02347 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CCNA_02347 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CCNA_02348 PF13673 Acetyltransferase (GNAT) domain CCNA_02349 PF01048 Phosphorylase superfamily CCNA_02352 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CCNA_02353 PF01799 [2Fe-2S] binding domain CCNA_02353 PF00111 2Fe-2S iron-sulfur cluster binding domain CCNA_02355 PF00730 HhH-GPD superfamily base excision DNA repair protein CCNA_02355 PF00633 Helix-hairpin-helix motif CCNA_02355 PF10576 Iron-sulfur binding domain of endonuclease III CCNA_02357 PF00171 Aldehyde dehydrogenase family CCNA_02358 PF01613 Flavin reductase like domain CCNA_02360 PF00535 Glycosyl transferase family 2 CCNA_02362 PF13185 GAF domain CCNA_02364 PF00672 HAMP domain CCNA_02364 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_02365 PF00723 Glycosyl hydrolases family 15 CCNA_02365 PF09137 Glucodextranase, domain N CCNA_02367 PF00356 Bacterial regulatory proteins, lacI family CCNA_02368 PF00128 Alpha amylase, catalytic domain CCNA_02369 PF00128 Alpha amylase, catalytic domain CCNA_02369 PF03714 Bacterial pullanase-associated domain CCNA_02369 PF02806 Alpha amylase, C-terminal all-beta domain CCNA_02371 PF04820 Tryptophan halogenase CCNA_02373 PF13276 HTH-like domain CCNA_02373 PF13683 Integrase core domain CCNA_02374 PF01527 Transposase CCNA_02380 PF02261 Aspartate decarboxylase CCNA_02384 PF13193 AMP-binding enzyme C-terminal domain CCNA_02384 PF00501 AMP-binding enzyme CCNA_02385 PF01474 Class-II DAHP synthetase family CCNA_02386 PF04932 O-Antigen ligase CCNA_02387 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_02387 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CCNA_02388 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CCNA_02389 PF00132 Bacterial transferase hexapeptide (six repeats) CCNA_02389 PF12804 MobA-like NTP transferase domain CCNA_02390 PF13419 Haloacid dehalogenase-like hydrolase CCNA_02394 PF02798 Glutathione S-transferase, N-terminal domain CCNA_02396 PF17171 Glutathione S-transferase, C-terminal domain CCNA_02396 PF17172 Glutathione S-transferase N-terminal domain CCNA_02399 PF00588 SpoU rRNA Methylase family CCNA_02401 PF00356 Bacterial regulatory proteins, lacI family CCNA_02402 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_02403 PF02405 Permease MlaE CCNA_02404 PF00005 ABC transporter CCNA_02409 PF01627 Hpt domain CCNA_02409 PF00512 His Kinase A (phospho-acceptor) domain CCNA_02409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02409 PF00672 HAMP domain CCNA_02409 PF00072 Response regulator receiver domain CCNA_02409 PF17149 Periplasmic sensor domain found in signal transduction proteins CCNA_02410 PF02515 CoA-transferase family III CCNA_02413 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_02413 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_02413 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_02415 PF01381 Helix-turn-helix CCNA_02416 PF00216 Bacterial DNA-binding protein CCNA_02420 PF02472 Biopolymer transport protein ExbD/TolR CCNA_02421 PF01618 MotA/TolQ/ExbB proton channel family CCNA_02422 PF00106 short chain dehydrogenase CCNA_02424 PF13305 Tetracyclin repressor-like, C-terminal domain CCNA_02424 PF00440 Bacterial regulatory proteins, tetR family CCNA_02425 PF03884 DNA gyrase inhibitor YacG CCNA_02426 PF10150 Ribonuclease E/G family CCNA_02427 PF02545 Maf-like protein CCNA_02428 PF01176 Translation initiation factor 1A / IF-1 CCNA_02430 PF06793 Uncharacterised protein family (UPF0262) CCNA_02431 PF00815 Histidinol dehydrogenase CCNA_02432 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CCNA_02435 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CCNA_02437 PF03466 LysR substrate binding domain CCNA_02437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_02438 PF14765 Polyketide synthase dehydratase CCNA_02438 PF00698 Acyl transferase domain CCNA_02438 PF00550 Phosphopantetheine attachment site CCNA_02438 PF08659 KR domain CCNA_02438 PF02801 Beta-ketoacyl synthase, C-terminal domain CCNA_02438 PF08990 Erythronolide synthase docking CCNA_02438 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_02438 PF16197 Ketoacyl-synthetase C-terminal extension CCNA_02438 PF00109 Beta-ketoacyl synthase, N-terminal domain CCNA_02439 PF07690 Major Facilitator Superfamily CCNA_02440 PF00356 Bacterial regulatory proteins, lacI family CCNA_02441 PF00072 Response regulator receiver domain CCNA_02441 PF00196 Bacterial regulatory proteins, luxR family CCNA_02442 PF01229 Glycosyl hydrolases family 39 CCNA_02444 PF01112 Asparaginase CCNA_02445 PF03932 CutC family CCNA_02446 PF03738 Glutathionylspermidine synthase preATP-grasp CCNA_02448 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) CCNA_02453 PF01451 Low molecular weight phosphotyrosine protein phosphatase CCNA_02454 PF05378 Hydantoinase/oxoprolinase N-terminal region CCNA_02454 PF01968 Hydantoinase/oxoprolinase CCNA_02455 PF01169 Uncharacterized protein family UPF0016 CCNA_02458 PF01642 Methylmalonyl-CoA mutase CCNA_02459 PF02310 B12 binding domain CCNA_02459 PF01642 Methylmalonyl-CoA mutase CCNA_02462 PF01906 Putative heavy-metal-binding CCNA_02463 PF01370 NAD dependent epimerase/dehydratase family CCNA_02464 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CCNA_02464 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CCNA_02464 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CCNA_02465 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CCNA_02465 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CCNA_02465 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CCNA_02466 PF16363 GDP-mannose 4,6 dehydratase CCNA_02467 PF02397 Bacterial sugar transferase CCNA_02469 PF07804 HipA-like C-terminal domain CCNA_02469 PF13657 HipA N-terminal domain CCNA_02471 PF02321 Outer membrane efflux protein CCNA_02473 PF00873 AcrB/AcrD/AcrF family CCNA_02475 PF00392 Bacterial regulatory proteins, gntR family CCNA_02475 PF07729 FCD domain CCNA_02476 PF00355 Rieske [2Fe-2S] domain CCNA_02477 PF00175 Oxidoreductase NAD-binding domain CCNA_02477 PF00111 2Fe-2S iron-sulfur cluster binding domain CCNA_02478 PF00364 Biotin-requiring enzyme CCNA_02478 PF00561 alpha/beta hydrolase fold CCNA_02479 PF00107 Zinc-binding dehydrogenase CCNA_02479 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_02480 PF00171 Aldehyde dehydrogenase family CCNA_02481 PF07715 TonB-dependent Receptor Plug Domain CCNA_02481 PF00593 TonB dependent receptor CCNA_02482 PF14525 AraC-binding-like domain CCNA_02482 PF12833 Helix-turn-helix domain CCNA_02483 PF00501 AMP-binding enzyme CCNA_02483 PF13193 AMP-binding enzyme C-terminal domain CCNA_02484 PF00378 Enoyl-CoA hydratase/isomerase CCNA_02485 PF00171 Aldehyde dehydrogenase family CCNA_02486 PF14525 AraC-binding-like domain CCNA_02486 PF12833 Helix-turn-helix domain CCNA_02487 PF01494 FAD binding domain CCNA_02488 PF01144 Coenzyme A transferase CCNA_02489 PF01144 Coenzyme A transferase CCNA_02490 PF00108 Thiolase, N-terminal domain CCNA_02490 PF02803 Thiolase, C-terminal domain CCNA_02491 PF00775 Dioxygenase CCNA_02491 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CCNA_02493 PF00206 Lyase CCNA_02493 PF10397 Adenylosuccinate lyase C-terminus CCNA_02494 PF02627 Carboxymuconolactone decarboxylase family CCNA_02495 PF07690 Major Facilitator Superfamily CCNA_02498 PF01464 Transglycosylase SLT domain CCNA_02501 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CCNA_02504 PF03743 Bacterial conjugation TrbI-like protein CCNA_02505 PF00437 Type II/IV secretion system protein CCNA_02507 PF02397 Bacterial sugar transferase CCNA_02516 PF02798 Glutathione S-transferase, N-terminal domain CCNA_02516 PF00043 Glutathione S-transferase, C-terminal domain CCNA_02518 PF02637 GatB domain CCNA_02518 PF02934 GatB/GatE catalytic domain CCNA_02519 PF01425 Amidase CCNA_02520 PF02686 Glu-tRNAGln amidotransferase C subunit CCNA_02521 PF03652 Holliday junction resolvase CCNA_02525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CCNA_02525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CCNA_02526 PF01979 Amidohydrolase family CCNA_02528 PF02660 Glycerol-3-phosphate acyltransferase CCNA_02529 PF17782 DprA winged helix domain CCNA_02529 PF02481 DNA recombination-mediator protein A CCNA_02530 PF08241 Methyltransferase domain CCNA_02535 PF01396 Topoisomerase DNA binding C4 zinc finger CCNA_02535 PF01751 Toprim domain CCNA_02535 PF13368 Topoisomerase C-terminal repeat CCNA_02535 PF01131 DNA topoisomerase CCNA_02537 PF17876 Cold shock domain CCNA_02537 PF00575 S1 RNA binding domain CCNA_02537 PF08206 Ribonuclease B OB domain CCNA_02537 PF00773 RNB domain CCNA_02537 PF08461 Ribonuclease R winged-helix domain CCNA_02538 PF17996 Carbohydrate esterase 2 N-terminal CCNA_02538 PF13472 GDSL-like Lipase/Acylhydrolase family CCNA_02539 PF00155 Aminotransferase class I and II CCNA_02540 PF07687 Peptidase dimerisation domain CCNA_02540 PF01546 Peptidase family M20/M25/M40 CCNA_02543 PF00471 Ribosomal protein L33 CCNA_02545 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CCNA_02546 PF00072 Response regulator receiver domain CCNA_02546 PF00990 Diguanylate cyclase, GGDEF domain CCNA_02547 PF00072 Response regulator receiver domain CCNA_02549 PF00480 ROK family CCNA_02550 PF11799 impB/mucB/samB family C-terminal domain CCNA_02550 PF00817 impB/mucB/samB family CCNA_02552 PF02617 ATP-dependent Clp protease adaptor protein ClpS CCNA_02553 PF07724 AAA domain (Cdc48 subfamily) CCNA_02553 PF17871 AAA lid domain CCNA_02553 PF00004 ATPase family associated with various cellular activities (AAA) CCNA_02553 PF02861 Clp amino terminal domain, pathogenicity island component CCNA_02553 PF10431 C-terminal, D2-small domain, of ClpB protein CCNA_02555 PF01230 HIT domain CCNA_02558 PF01425 Amidase CCNA_02563 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_02563 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_02563 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_02566 PF11940 Domain of unknown function (DUF3458) Ig-like fold CCNA_02566 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CCNA_02566 PF01433 Peptidase family M1 domain CCNA_02567 PF00989 PAS fold CCNA_02567 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02567 PF00512 His Kinase A (phospho-acceptor) domain CCNA_02570 PF07690 Major Facilitator Superfamily CCNA_02571 PF07690 Major Facilitator Superfamily CCNA_02572 PF00206 Lyase CCNA_02572 PF10397 Adenylosuccinate lyase C-terminus CCNA_02576 PF01259 SAICAR synthetase CCNA_02577 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CCNA_02579 PF00067 Cytochrome P450 CCNA_02580 PF00301 Rubredoxin CCNA_02586 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CCNA_02586 PF00586 AIR synthase related protein, N-terminal domain CCNA_02586 PF02769 AIR synthase related protein, C-terminal domain CCNA_02587 PF00512 His Kinase A (phospho-acceptor) domain CCNA_02587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02587 PF01627 Hpt domain CCNA_02587 PF00072 Response regulator receiver domain CCNA_02587 PF17149 Periplasmic sensor domain found in signal transduction proteins CCNA_02587 PF00672 HAMP domain CCNA_02588 PF04389 Peptidase family M28 CCNA_02589 PF01722 BolA-like protein CCNA_02591 PF00462 Glutaredoxin CCNA_02594 PF01435 Peptidase family M48 CCNA_02596 PF01479 S4 domain CCNA_02596 PF00163 Ribosomal protein S4/S9 N-terminal domain CCNA_02598 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CCNA_02600 PF00756 Putative esterase CCNA_02601 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_02601 PF00107 Zinc-binding dehydrogenase CCNA_02602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_02602 PF03466 LysR substrate binding domain CCNA_02606 PF00512 His Kinase A (phospho-acceptor) domain CCNA_02606 PF01627 Hpt domain CCNA_02606 PF00072 Response regulator receiver domain CCNA_02606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02607 PF00180 Isocitrate/isopropylmalate dehydrogenase CCNA_02612 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CCNA_02612 PF01411 tRNA synthetases class II (A) CCNA_02612 PF02272 DHHA1 domain CCNA_02615 PF04209 homogentisate 1,2-dioxygenase CCNA_02616 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CCNA_02617 PF00155 Aminotransferase class I and II CCNA_02618 PF01037 Lrp/AsnC ligand binding domain CCNA_02623 PF12327 FtsZ family, C-terminal domain CCNA_02623 PF00091 Tubulin/FtsZ family, GTPase domain CCNA_02624 PF02491 SHS2 domain inserted in FTSA CCNA_02625 PF08478 POTRA domain, FtsQ-type CCNA_02625 PF03799 Cell division protein FtsQ CCNA_02626 PF07478 D-ala D-ala ligase C-terminus CCNA_02626 PF01820 D-ala D-ala ligase N-terminus CCNA_02627 PF04389 Peptidase family M28 CCNA_02627 PF02225 PA domain CCNA_02628 PF01565 FAD binding domain CCNA_02628 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CCNA_02629 PF08245 Mur ligase middle domain CCNA_02629 PF01225 Mur ligase family, catalytic domain CCNA_02629 PF02875 Mur ligase family, glutamate ligase domain CCNA_02634 PF04101 Glycosyltransferase family 28 C-terminal domain CCNA_02634 PF03033 Glycosyltransferase family 28 N-terminal domain CCNA_02635 PF01098 Cell cycle protein CCNA_02637 PF07536 HWE histidine kinase CCNA_02637 PF13426 PAS domain CCNA_02637 PF08447 PAS fold CCNA_02639 PF08245 Mur ligase middle domain CCNA_02640 PF00953 Glycosyl transferase family 4 CCNA_02641 PF01225 Mur ligase family, catalytic domain CCNA_02641 PF02875 Mur ligase family, glutamate ligase domain CCNA_02641 PF08245 Mur ligase middle domain CCNA_02642 PF01225 Mur ligase family, catalytic domain CCNA_02642 PF02875 Mur ligase family, glutamate ligase domain CCNA_02642 PF08245 Mur ligase middle domain CCNA_02643 PF00905 Penicillin binding protein transpeptidase domain CCNA_02643 PF03717 Penicillin-binding Protein dimerisation domain CCNA_02645 PF01795 MraW methylase family CCNA_02646 PF02381 MraZ protein, putative antitoxin-like CCNA_02647 PF03466 LysR substrate binding domain CCNA_02647 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_02650 PF01510 N-acetylmuramoyl-L-alanine amidase CCNA_02651 PF00892 EamA-like transporter family CCNA_02652 PF00743 Flavin-binding monooxygenase-like CCNA_02658 PF00378 Enoyl-CoA hydratase/isomerase CCNA_02659 PF00072 Response regulator receiver domain CCNA_02663 PF01258 Prokaryotic dksA/traR C4-type zinc finger CCNA_02664 PF10768 Class II flagellar assembly regulator CCNA_02665 PF02119 Flagellar P-ring protein CCNA_02666 PF10135 Rod binding protein CCNA_02670 PF00005 ABC transporter CCNA_02673 PF17760 UvrA interaction domain CCNA_02673 PF17755 UvrA DNA-binding domain CCNA_02674 PF13340 Putative transposase of IS4/5 family (DUF4096) CCNA_02677 PF00043 Glutathione S-transferase, C-terminal domain CCNA_02677 PF02798 Glutathione S-transferase, N-terminal domain CCNA_02681 PF01134 Glucose inhibited division protein A CCNA_02683 PF01593 Flavin containing amine oxidoreductase CCNA_02686 PF07687 Peptidase dimerisation domain CCNA_02686 PF01546 Peptidase family M20/M25/M40 CCNA_02687 PF00266 Aminotransferase class-V CCNA_02692 PF04264 YceI-like domain CCNA_02694 PF03069 Acetamidase/Formamidase family CCNA_02696 PF01425 Amidase CCNA_02698 PF01156 Inosine-uridine preferring nucleoside hydrolase CCNA_02699 PF01979 Amidohydrolase family CCNA_02701 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CCNA_02701 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CCNA_02702 PF00111 2Fe-2S iron-sulfur cluster binding domain CCNA_02702 PF01799 [2Fe-2S] binding domain CCNA_02703 PF00576 HIUase/Transthyretin family CCNA_02704 PF00390 Malic enzyme, N-terminal domain CCNA_02704 PF03949 Malic enzyme, NAD binding domain CCNA_02704 PF01515 Phosphate acetyl/butaryl transferase CCNA_02705 PF00313 'Cold-shock' DNA-binding domain CCNA_02708 PF02082 Transcriptional regulator CCNA_02709 PF01743 Poly A polymerase head domain CCNA_02709 PF01368 DHH family CCNA_02709 PF00571 CBS domain CCNA_02709 PF12627 Probable RNA and SrmB- binding site of polymerase A CCNA_02709 PF02272 DHHA1 domain CCNA_02712 PF03783 Curli production assembly/transport component CsgG CCNA_02714 PF00005 ABC transporter CCNA_02714 PF16326 ABC transporter C-terminal domain CCNA_02715 PF00512 His Kinase A (phospho-acceptor) domain CCNA_02715 PF01627 Hpt domain CCNA_02715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02715 PF00072 Response regulator receiver domain CCNA_02717 PF00005 ABC transporter CCNA_02718 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_02721 PF00675 Insulinase (Peptidase family M16) CCNA_02721 PF05193 Peptidase M16 inactive domain CCNA_02724 PF00248 Aldo/keto reductase family CCNA_02725 PF05199 GMC oxidoreductase CCNA_02725 PF00732 GMC oxidoreductase CCNA_02726 PF00132 Bacterial transferase hexapeptide (six repeats) CCNA_02727 PF02562 PhoH-like protein CCNA_02729 PF03169 OPT oligopeptide transporter protein CCNA_02730 PF13417 Glutathione S-transferase, N-terminal domain CCNA_02730 PF00043 Glutathione S-transferase, C-terminal domain CCNA_02734 PF06426 Serine acetyltransferase, N-terminal CCNA_02734 PF00132 Bacterial transferase hexapeptide (six repeats) CCNA_02737 PF14489 QueF-like protein CCNA_02739 PF00665 Integrase core domain CCNA_02747 PF03180 NLPA lipoprotein CCNA_02750 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_02751 PF09383 NIL domain CCNA_02751 PF00005 ABC transporter CCNA_02752 PF00072 Response regulator receiver domain CCNA_02752 PF09308 LuxQ, periplasmic CCNA_02752 PF00512 His Kinase A (phospho-acceptor) domain CCNA_02752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02754 PF01979 Amidohydrolase family CCNA_02755 PF01381 Helix-turn-helix CCNA_02756 PF18146 Damage-inducible protein CinA KH domain CCNA_02756 PF00994 Probable molybdopterin binding domain CCNA_02756 PF02464 Competence-damaged protein CCNA_02757 PF17746 SfsA N-terminal OB domain CCNA_02757 PF03749 Sugar fermentation stimulation protein RE domain CCNA_02759 PF00557 Metallopeptidase family M24 CCNA_02762 PF04002 RadC-like JAB domain CCNA_02767 PF03743 Bacterial conjugation TrbI-like protein CCNA_02770 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CCNA_02771 PF01527 Transposase CCNA_02772 PF13276 HTH-like domain CCNA_02772 PF13683 Integrase core domain CCNA_02773 PF02203 Tar ligand binding domain homologue CCNA_02773 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_02773 PF00672 HAMP domain CCNA_02776 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CCNA_02776 PF07685 CobB/CobQ-like glutamine amidotransferase domain CCNA_02779 PF00756 Putative esterase CCNA_02779 PF01476 LysM domain CCNA_02785 PF10137 Predicted nucleotide-binding protein containing TIR-like domain CCNA_02790 PF04542 Sigma-70 region 2 CCNA_02790 PF08281 Sigma-70, region 4 CCNA_02792 PF07715 TonB-dependent Receptor Plug Domain CCNA_02792 PF00593 TonB dependent receptor CCNA_02806 PF02321 Outer membrane efflux protein CCNA_02807 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CCNA_02809 PF00873 AcrB/AcrD/AcrF family CCNA_02810 PF02641 Uncharacterized ACR, COG1993 CCNA_02811 PF00403 Heavy-metal-associated domain CCNA_02812 PF00462 Glutaredoxin CCNA_02814 PF00665 Integrase core domain CCNA_02821 PF07804 HipA-like C-terminal domain CCNA_02821 PF13657 HipA N-terminal domain CCNA_02822 PF01381 Helix-turn-helix CCNA_02826 PF01548 Transposase CCNA_02826 PF02371 Transposase IS116/IS110/IS902 family CCNA_02827 PF01527 Transposase CCNA_02828 PF13276 HTH-like domain CCNA_02828 PF13683 Integrase core domain CCNA_02830 PF04002 RadC-like JAB domain CCNA_02833 PF01794 Ferric reductase like transmembrane component CCNA_02834 PF00174 Oxidoreductase molybdopterin binding domain CCNA_02837 PF08281 Sigma-70, region 4 CCNA_02837 PF04542 Sigma-70 region 2 CCNA_02839 PF08335 GlnD PII-uridylyltransferase CCNA_02839 PF03710 Glutamate-ammonia ligase adenylyltransferase CCNA_02842 PF00672 HAMP domain CCNA_02842 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02842 PF00512 His Kinase A (phospho-acceptor) domain CCNA_02843 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CCNA_02845 PF00486 Transcriptional regulatory protein, C terminal CCNA_02845 PF00072 Response regulator receiver domain CCNA_02846 PF13180 PDZ domain CCNA_02847 PF03918 Cytochrome C biogenesis protein CCNA_02848 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CCNA_02848 PF01578 Cytochrome C assembly protein CCNA_02849 PF03100 CcmE CCNA_02851 PF12697 Alpha/beta hydrolase family CCNA_02853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02854 PF00486 Transcriptional regulatory protein, C terminal CCNA_02854 PF00072 Response regulator receiver domain CCNA_02860 PF01556 DnaJ C terminal domain CCNA_02860 PF00226 DnaJ domain CCNA_02877 PF04860 Phage portal protein CCNA_02881 PF00171 Aldehyde dehydrogenase family CCNA_02883 PF01593 Flavin containing amine oxidoreductase CCNA_02884 PF00440 Bacterial regulatory proteins, tetR family CCNA_02884 PF08362 YcdC-like protein, C-terminal region CCNA_02885 PF00857 Isochorismatase family CCNA_02886 PF01042 Endoribonuclease L-PSP CCNA_02887 PF00561 alpha/beta hydrolase fold CCNA_02888 PF00296 Luciferase-like monooxygenase CCNA_02889 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CCNA_02889 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CCNA_02893 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CCNA_02893 PF04616 Glycosyl hydrolases family 43 CCNA_02894 PF00331 Glycosyl hydrolase family 10 CCNA_02896 PF04820 Tryptophan halogenase CCNA_02898 PF04820 Tryptophan halogenase CCNA_02899 PF04820 Tryptophan halogenase CCNA_02900 PF01546 Peptidase family M20/M25/M40 CCNA_02900 PF07687 Peptidase dimerisation domain CCNA_02902 PF07477 Glycosyl hydrolase family 67 C-terminus CCNA_02902 PF07488 Glycosyl hydrolase family 67 middle domain CCNA_02902 PF03648 Glycosyl hydrolase family 67 N-terminus CCNA_02903 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CCNA_02903 PF13378 Enolase C-terminal domain-like CCNA_02904 PF00392 Bacterial regulatory proteins, gntR family CCNA_02904 PF07729 FCD domain CCNA_02910 PF07715 TonB-dependent Receptor Plug Domain CCNA_02910 PF00593 TonB dependent receptor CCNA_02917 PF07726 ATPase family associated with various cellular activities (AAA) CCNA_02917 PF17863 AAA lid domain CCNA_02924 PF06906 Protein of unknown function (DUF1272) CCNA_02925 PF00117 Glutamine amidotransferase class-I CCNA_02925 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CCNA_02929 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_02929 PF00107 Zinc-binding dehydrogenase CCNA_02929 PF13823 Alcohol dehydrogenase GroES-associated CCNA_02930 PF04480 Protein of unknown function (DUF559) CCNA_02935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_02935 PF00672 HAMP domain CCNA_02938 PF00691 OmpA family CCNA_02940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_02940 PF00672 HAMP domain CCNA_02941 PF01272 Transcription elongation factor, GreA/GreB, C-term CCNA_02941 PF03449 Transcription elongation factor, N-terminal CCNA_02942 PF06258 Mitochondrial fission ELM1 CCNA_02945 PF00072 Response regulator receiver domain CCNA_02945 PF09308 LuxQ, periplasmic CCNA_02945 PF00512 His Kinase A (phospho-acceptor) domain CCNA_02945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02946 PF02348 Cytidylyltransferase CCNA_02951 PF08889 WbqC-like protein family CCNA_02954 PF00106 short chain dehydrogenase CCNA_02955 PF01925 Sulfite exporter TauE/SafE CCNA_02956 PF11127 Protein of unknown function (DUF2892) CCNA_02956 PF00581 Rhodanese-like domain CCNA_02957 PF01022 Bacterial regulatory protein, arsR family CCNA_02959 PF00753 Metallo-beta-lactamase superfamily CCNA_02961 PF03102 NeuB family CCNA_02961 PF08666 SAF domain CCNA_02964 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_02966 PF00210 Ferritin-like domain CCNA_02967 PF00072 Response regulator receiver domain CCNA_02967 PF13426 PAS domain CCNA_02967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02974 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CCNA_02975 PF01541 GIY-YIG catalytic domain CCNA_02975 PF02151 UvrB/uvrC motif CCNA_02975 PF08459 UvrC Helix-hairpin-helix N-terminal CCNA_02977 PF04542 Sigma-70 region 2 CCNA_02977 PF08281 Sigma-70, region 4 CCNA_02978 PF00512 His Kinase A (phospho-acceptor) domain CCNA_02978 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_02978 PF08521 Two-component sensor kinase N-terminal CCNA_02980 PF03301 Tryptophan 2,3-dioxygenase CCNA_02981 PF01037 Lrp/AsnC ligand binding domain CCNA_02983 PF00535 Glycosyl transferase family 2 CCNA_02993 PF00391 PEP-utilising enzyme, mobile domain CCNA_02993 PF01370 NAD dependent epimerase/dehydratase family CCNA_02994 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CCNA_02994 PF02142 MGS-like domain CCNA_02994 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CCNA_02995 PF02798 Glutathione S-transferase, N-terminal domain CCNA_02997 PF00313 'Cold-shock' DNA-binding domain CCNA_03000 PF05114 Protein of unknown function (DUF692) CCNA_03002 PF01066 CDP-alcohol phosphatidyltransferase CCNA_03003 PF07536 HWE histidine kinase CCNA_03003 PF08447 PAS fold CCNA_03003 PF13426 PAS domain CCNA_03004 PF00485 Phosphoribulokinase / Uridine kinase family CCNA_03006 PF02445 Quinolinate synthetase A protein CCNA_03007 PF00890 FAD binding domain CCNA_03007 PF02910 Fumarate reductase flavoprotein C-term CCNA_03009 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CCNA_03009 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CCNA_03012 PF00578 AhpC/TSA family CCNA_03012 PF10417 C-terminal domain of 1-Cys peroxiredoxin CCNA_03013 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_03013 PF13192 Thioredoxin domain CCNA_03023 PF00593 TonB dependent receptor CCNA_03023 PF07715 TonB-dependent Receptor Plug Domain CCNA_03024 PF01063 Amino-transferase class IV CCNA_03026 PF00486 Transcriptional regulatory protein, C terminal CCNA_03026 PF00072 Response regulator receiver domain CCNA_03027 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03027 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03027 PF00672 HAMP domain CCNA_03029 PF02348 Cytidylyltransferase CCNA_03032 PF00883 Cytosol aminopeptidase family, catalytic domain CCNA_03032 PF02789 Cytosol aminopeptidase family, N-terminal domain CCNA_03037 PF00437 Type II/IV secretion system protein CCNA_03040 PF00263 Bacterial type II and III secretion system protein CCNA_03040 PF13629 Pilus formation protein N terminal region CCNA_03040 PF04972 BON domain CCNA_03048 PF00425 chorismate binding enzyme CCNA_03048 PF04715 Anthranilate synthase component I, N terminal region CCNA_03050 PF13350 Tyrosine phosphatase family CCNA_03053 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CCNA_03054 PF01965 DJ-1/PfpI family CCNA_03054 PF12833 Helix-turn-helix domain CCNA_03055 PF01965 DJ-1/PfpI family CCNA_03056 PF07858 Limonene-1,2-epoxide hydrolase catalytic domain CCNA_03058 PF00795 Carbon-nitrogen hydrolase CCNA_03060 PF07411 Domain of unknown function (DUF1508) CCNA_03064 PF03551 Transcriptional regulator PadR-like family CCNA_03066 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03066 PF00072 Response regulator receiver domain CCNA_03066 PF09308 LuxQ, periplasmic CCNA_03068 PF02798 Glutathione S-transferase, N-terminal domain CCNA_03068 PF00043 Glutathione S-transferase, C-terminal domain CCNA_03070 PF01361 Tautomerase enzyme CCNA_03071 PF00669 Bacterial flagellin N-terminal helical region CCNA_03071 PF00700 Bacterial flagellin C-terminal helical region CCNA_03076 PF12344 Ultra-violet resistance protein B CCNA_03076 PF02151 UvrB/uvrC motif CCNA_03076 PF17757 UvrB interaction domain CCNA_03076 PF04851 Type III restriction enzyme, res subunit CCNA_03076 PF00271 Helicase conserved C-terminal domain CCNA_03079 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CCNA_03080 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CCNA_03083 PF00672 HAMP domain CCNA_03083 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CCNA_03083 PF00072 Response regulator receiver domain CCNA_03083 PF01627 Hpt domain CCNA_03083 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03085 PF03060 Nitronate monooxygenase CCNA_03088 PF00672 HAMP domain CCNA_03088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03088 PF17149 Periplasmic sensor domain found in signal transduction proteins CCNA_03088 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03088 PF01627 Hpt domain CCNA_03088 PF00072 Response regulator receiver domain CCNA_03090 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CCNA_03092 PF00067 Cytochrome P450 CCNA_03094 PF03328 HpcH/HpaI aldolase/citrate lyase family CCNA_03095 PF00924 Mechanosensitive ion channel CCNA_03095 PF12795 Mechanosensitive ion channel porin domain CCNA_03095 PF12794 Mechanosensitive ion channel inner membrane domain 1 CCNA_03097 PF00248 Aldo/keto reductase family CCNA_03100 PF08274 PhnA Zinc-Ribbon CCNA_03100 PF03831 PhnA domain CCNA_03101 PF00589 Phage integrase family CCNA_03101 PF02899 Phage integrase, N-terminal SAM-like domain CCNA_03103 PF01202 Shikimate kinase CCNA_03104 PF01761 3-dehydroquinate synthase CCNA_03105 PF00226 DnaJ domain CCNA_03108 PF00593 TonB dependent receptor CCNA_03108 PF07715 TonB-dependent Receptor Plug Domain CCNA_03112 PF01595 Cyclin M transmembrane N-terminal domain CCNA_03112 PF03471 Transporter associated domain CCNA_03112 PF00571 CBS domain CCNA_03113 PF01569 PAP2 superfamily CCNA_03115 PF12556 Cobaltochelatase CobS subunit N terminal CCNA_03115 PF07728 AAA domain (dynein-related subfamily) CCNA_03115 PF08406 CbbQ/NirQ/NorQ C-terminal CCNA_03120 PF01584 CheW-like domain CCNA_03124 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_03124 PF00107 Zinc-binding dehydrogenase CCNA_03126 PF05506 Domain of unknown function (DUF756) CCNA_03126 PF04185 Phosphoesterase family CCNA_03128 PF00892 EamA-like transporter family CCNA_03129 PF01551 Peptidase family M23 CCNA_03129 PF01476 LysM domain CCNA_03129 PF08525 Opacity-associated protein A N-terminal motif CCNA_03130 PF00486 Transcriptional regulatory protein, C terminal CCNA_03130 PF00072 Response regulator receiver domain CCNA_03133 PF05973 Phage derived protein Gp49-like (DUF891) CCNA_03135 PF18269 T3SS EscN ATPase C-terminal domain CCNA_03135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CCNA_03135 PF02874 ATP synthase alpha/beta family, beta-barrel domain CCNA_03137 PF00331 Glycosyl hydrolase family 10 CCNA_03138 PF00141 Peroxidase CCNA_03139 PF00920 Dehydratase family CCNA_03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_03140 PF03466 LysR substrate binding domain CCNA_03142 PF04546 Sigma-70, non-essential region CCNA_03142 PF04545 Sigma-70, region 4 CCNA_03142 PF04539 Sigma-70 region 3 CCNA_03142 PF04542 Sigma-70 region 2 CCNA_03142 PF00140 Sigma-70 factor, region 1.2 CCNA_03142 PF03979 Sigma-70 factor, region 1.1 CCNA_03143 PF13426 PAS domain CCNA_03143 PF08447 PAS fold CCNA_03143 PF07536 HWE histidine kinase CCNA_03144 PF01807 CHC2 zinc finger CCNA_03144 PF08275 DNA primase catalytic core, N-terminal domain CCNA_03144 PF08278 DNA primase DnaG DnaB-binding CCNA_03144 PF10410 DnaB-helicase binding domain of primase CCNA_03149 PF14310 Fibronectin type III-like domain CCNA_03149 PF01915 Glycosyl hydrolase family 3 C-terminal domain CCNA_03149 PF00933 Glycosyl hydrolase family 3 N terminal domain CCNA_03154 PF07536 HWE histidine kinase CCNA_03154 PF13426 PAS domain CCNA_03154 PF08447 PAS fold CCNA_03158 PF02424 ApbE family CCNA_03159 PF00667 FAD binding domain CCNA_03159 PF00258 Flavodoxin CCNA_03159 PF00175 Oxidoreductase NAD-binding domain CCNA_03160 PF12804 MobA-like NTP transferase domain CCNA_03161 PF00356 Bacterial regulatory proteins, lacI family CCNA_03162 PF01960 ArgJ family CCNA_03163 PF09312 SurA N-terminal domain CCNA_03163 PF00639 PPIC-type PPIASE domain CCNA_03164 PF02810 SEC-C motif CCNA_03164 PF07517 SecA DEAD-like domain CCNA_03164 PF01043 SecA preprotein cross-linking domain CCNA_03164 PF07516 SecA Wing and Scaffold domain CCNA_03165 PF07690 Major Facilitator Superfamily CCNA_03171 PF09308 LuxQ, periplasmic CCNA_03171 PF00072 Response regulator receiver domain CCNA_03171 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03171 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03174 PF07690 Major Facilitator Superfamily CCNA_03177 PF01642 Methylmalonyl-CoA mutase CCNA_03177 PF02310 B12 binding domain CCNA_03178 PF13411 MerR HTH family regulatory protein CCNA_03179 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_03179 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CCNA_03180 PF00378 Enoyl-CoA hydratase/isomerase CCNA_03181 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_03181 PF00107 Zinc-binding dehydrogenase CCNA_03183 PF00144 Beta-lactamase CCNA_03184 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_03184 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_03184 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_03187 PF00892 EamA-like transporter family CCNA_03188 PF06441 Epoxide hydrolase N terminus CCNA_03190 PF01212 Beta-eliminating lyase CCNA_03191 PF03707 Bacterial signalling protein N terminal repeat CCNA_03191 PF00563 EAL domain CCNA_03191 PF00990 Diguanylate cyclase, GGDEF domain CCNA_03191 PF13188 PAS domain CCNA_03193 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CCNA_03195 PF04545 Sigma-70, region 4 CCNA_03195 PF00140 Sigma-70 factor, region 1.2 CCNA_03195 PF04542 Sigma-70 region 2 CCNA_03197 PF12697 Alpha/beta hydrolase family CCNA_03200 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CCNA_03200 PF00072 Response regulator receiver domain CCNA_03200 PF01627 Hpt domain CCNA_03200 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03200 PF00672 HAMP domain CCNA_03201 PF00709 Adenylosuccinate synthetase CCNA_03203 PF00291 Pyridoxal-phosphate dependent enzyme CCNA_03204 PF01168 Alanine racemase, N-terminal domain CCNA_03204 PF14031 Putative serine dehydratase domain CCNA_03206 PF03313 Serine dehydratase alpha chain CCNA_03206 PF03315 Serine dehydratase beta chain CCNA_03209 PF02803 Thiolase, C-terminal domain CCNA_03209 PF00108 Thiolase, N-terminal domain CCNA_03210 PF01638 HxlR-like helix-turn-helix CCNA_03211 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CCNA_03211 PF13378 Enolase C-terminal domain-like CCNA_03217 PF17938 Tetracyclin repressor-like, C-terminal domain CCNA_03217 PF00440 Bacterial regulatory proteins, tetR family CCNA_03218 PF13533 Biotin-lipoyl like CCNA_03219 PF00873 AcrB/AcrD/AcrF family CCNA_03222 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CCNA_03222 PF00355 Rieske [2Fe-2S] domain CCNA_03223 PF00440 Bacterial regulatory proteins, tetR family CCNA_03223 PF13977 BetI-type transcriptional repressor, C-terminal CCNA_03225 PF01979 Amidohydrolase family CCNA_03226 PF13520 Amino acid permease CCNA_03228 PF13181 Tetratricopeptide repeat CCNA_03229 PF01266 FAD dependent oxidoreductase CCNA_03230 PF00120 Glutamine synthetase, catalytic domain CCNA_03232 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CCNA_03233 PF00202 Aminotransferase class-III CCNA_03234 PF07722 Peptidase C26 CCNA_03235 PF00005 ABC transporter CCNA_03235 PF08402 TOBE domain CCNA_03236 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_03238 PF00528 Binding-protein-dependent transport system inner membrane component CCNA_03239 PF13416 Bacterial extracellular solute-binding protein CCNA_03240 PF00120 Glutamine synthetase, catalytic domain CCNA_03241 PF00202 Aminotransferase class-III CCNA_03242 PF00171 Aldehyde dehydrogenase family CCNA_03243 PF00171 Aldehyde dehydrogenase family CCNA_03244 PF00392 Bacterial regulatory proteins, gntR family CCNA_03244 PF07729 FCD domain CCNA_03245 PF00202 Aminotransferase class-III CCNA_03247 PF00672 HAMP domain CCNA_03247 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_03250 PF00563 EAL domain CCNA_03250 PF04940 Sensors of blue-light using FAD CCNA_03256 PF01264 Chorismate synthase CCNA_03257 PF00072 Response regulator receiver domain CCNA_03260 PF01242 6-pyruvoyl tetrahydropterin synthase CCNA_03262 PF06508 Queuosine biosynthesis protein QueC CCNA_03263 PF00593 TonB dependent receptor CCNA_03263 PF07715 TonB-dependent Receptor Plug Domain CCNA_03265 PF00072 Response regulator receiver domain CCNA_03265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03267 PF01381 Helix-turn-helix CCNA_03269 PF02685 Glucokinase CCNA_03270 PF01037 Lrp/AsnC ligand binding domain CCNA_03271 PF01053 Cys/Met metabolism PLP-dependent enzyme CCNA_03272 PF07536 HWE histidine kinase CCNA_03272 PF13426 PAS domain CCNA_03272 PF08447 PAS fold CCNA_03273 PF06532 Negative regulator of sigma F CCNA_03277 PF00534 Glycosyl transferases group 1 CCNA_03278 PF01266 FAD dependent oxidoreductase CCNA_03279 PF00106 short chain dehydrogenase CCNA_03281 PF01037 Lrp/AsnC ligand binding domain CCNA_03282 PF05726 Pirin C-terminal cupin domain CCNA_03282 PF02678 Pirin CCNA_03284 PF00962 Adenosine/AMP deaminase CCNA_03285 PF01544 CorA-like Mg2+ transporter protein CCNA_03292 PF00501 AMP-binding enzyme CCNA_03292 PF13193 AMP-binding enzyme C-terminal domain CCNA_03293 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CCNA_03293 PF00378 Enoyl-CoA hydratase/isomerase CCNA_03293 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CCNA_03294 PF00144 Beta-lactamase CCNA_03295 PF17149 Periplasmic sensor domain found in signal transduction proteins CCNA_03295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03295 PF00672 HAMP domain CCNA_03295 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03295 PF00072 Response regulator receiver domain CCNA_03295 PF01627 Hpt domain CCNA_03296 PF00440 Bacterial regulatory proteins, tetR family CCNA_03296 PF16925 Tetracyclin repressor-like, C-terminal domain CCNA_03298 PF00593 TonB dependent receptor CCNA_03298 PF07715 TonB-dependent Receptor Plug Domain CCNA_03299 PF02321 Outer membrane efflux protein CCNA_03300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CCNA_03301 PF00873 AcrB/AcrD/AcrF family CCNA_03303 PF03143 Elongation factor Tu C-terminal domain CCNA_03303 PF03144 Elongation factor Tu domain 2 CCNA_03303 PF00009 Elongation factor Tu GTP binding domain CCNA_03304 PF03764 Elongation factor G, domain IV CCNA_03304 PF14492 Elongation Factor G, domain II CCNA_03304 PF00009 Elongation factor Tu GTP binding domain CCNA_03304 PF03144 Elongation factor Tu domain 2 CCNA_03304 PF00679 Elongation factor G C-terminus CCNA_03305 PF00177 Ribosomal protein S7p/S5e CCNA_03306 PF00164 Ribosomal protein S12/S23 CCNA_03309 PF00561 alpha/beta hydrolase fold CCNA_03310 PF00467 KOW motif CCNA_03310 PF02357 Transcription termination factor nusG CCNA_03314 PF00970 Oxidoreductase FAD-binding domain CCNA_03314 PF00175 Oxidoreductase NAD-binding domain CCNA_03315 PF03453 MoeA N-terminal region (domain I and II) CCNA_03315 PF03454 MoeA C-terminal region (domain IV) CCNA_03315 PF00994 Probable molybdopterin binding domain CCNA_03316 PF02719 Polysaccharide biosynthesis protein CCNA_03317 PF07733 Bacterial DNA polymerase III alpha NTPase domain CCNA_03317 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CCNA_03317 PF14579 Helix-hairpin-helix motif CCNA_03317 PF02811 PHP domain CCNA_03317 PF01336 OB-fold nucleic acid binding domain CCNA_03320 PF02785 Biotin carboxylase C-terminal domain CCNA_03320 PF00289 Biotin carboxylase, N-terminal domain CCNA_03320 PF00364 Biotin-requiring enzyme CCNA_03320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CCNA_03322 PF01842 ACT domain CCNA_03322 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CCNA_03322 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CCNA_03323 PF00266 Aminotransferase class-V CCNA_03326 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03326 PF00072 Response regulator receiver domain CCNA_03326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03326 PF01627 Hpt domain CCNA_03328 PF02567 Phenazine biosynthesis-like protein CCNA_03331 PF08543 Phosphomethylpyrimidine kinase CCNA_03332 PF00809 Pterin binding enzyme CCNA_03333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03333 PF00072 Response regulator receiver domain CCNA_03333 PF13426 PAS domain CCNA_03334 PF01434 Peptidase family M41 CCNA_03334 PF06480 FtsH Extracellular CCNA_03334 PF17862 AAA+ lid domain CCNA_03334 PF00004 ATPase family associated with various cellular activities (AAA) CCNA_03335 PF01171 PP-loop family CCNA_03337 PF00691 OmpA family CCNA_03338 PF07676 WD40-like Beta Propeller Repeat CCNA_03338 PF04052 TolB amino-terminal domain CCNA_03340 PF02472 Biopolymer transport protein ExbD/TolR CCNA_03341 PF01618 MotA/TolQ/ExbB proton channel family CCNA_03342 PF03061 Thioesterase superfamily CCNA_03344 PF17864 RuvB AAA lid domain CCNA_03344 PF05491 RuvB C-terminal winged helix domain CCNA_03344 PF05496 Holliday junction DNA helicase RuvB P-loop domain CCNA_03345 PF07499 RuvA, C-terminal domain CCNA_03345 PF01330 RuvA N terminal domain CCNA_03346 PF02075 Crossover junction endodeoxyribonuclease RuvC CCNA_03351 PF01259 SAICAR synthetase CCNA_03352 PF01709 Transcriptional regulator CCNA_03353 PF13277 YmdB-like protein CCNA_03354 PF01812 5-formyltetrahydrofolate cyclo-ligase family CCNA_03355 PF00326 Prolyl oligopeptidase family CCNA_03358 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CCNA_03358 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CCNA_03359 PF00162 Phosphoglycerate kinase CCNA_03360 PF01116 Fructose-bisphosphate aldolase class-II CCNA_03362 PF04545 Sigma-70, region 4 CCNA_03362 PF04542 Sigma-70 region 2 CCNA_03364 PF05114 Protein of unknown function (DUF692) CCNA_03367 PF00072 Response regulator receiver domain CCNA_03370 PF00583 Acetyltransferase (GNAT) family CCNA_03371 PF00210 Ferritin-like domain CCNA_03373 PF02581 Thiamine monophosphate synthase CCNA_03375 PF08281 Sigma-70, region 4 CCNA_03375 PF04542 Sigma-70 region 2 CCNA_03375 PF12680 SnoaL-like domain CCNA_03378 PF00459 Inositol monophosphatase family CCNA_03379 PF13443 Cro/C1-type HTH DNA-binding domain CCNA_03381 PF03009 Glycerophosphoryl diester phosphodiesterase family CCNA_03383 PF00005 ABC transporter CCNA_03383 PF00664 ABC transporter transmembrane region CCNA_03384 PF01197 Ribosomal protein L31 CCNA_03385 PF03692 Putative zinc- or iron-chelating domain CCNA_03386 PF00905 Penicillin binding protein transpeptidase domain CCNA_03386 PF17092 Penicillin-binding protein OB-like domain CCNA_03386 PF00912 Transglycosylase CCNA_03387 PF01177 Asp/Glu/Hydantoin racemase CCNA_03389 PF00005 ABC transporter CCNA_03391 PF13443 Cro/C1-type HTH DNA-binding domain CCNA_03392 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CCNA_03392 PF02222 ATP-grasp domain CCNA_03393 PF00731 AIR carboxylase CCNA_03394 PF17158 Membrane-associated sensor, integral membrane domain CCNA_03394 PF00990 Diguanylate cyclase, GGDEF domain CCNA_03399 PF02441 Flavoprotein CCNA_03402 PF08659 KR domain CCNA_03402 PF00550 Phosphopantetheine attachment site CCNA_03402 PF02801 Beta-ketoacyl synthase, C-terminal domain CCNA_03402 PF00109 Beta-ketoacyl synthase, N-terminal domain CCNA_03402 PF00107 Zinc-binding dehydrogenase CCNA_03402 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_03402 PF14765 Polyketide synthase dehydratase CCNA_03402 PF00698 Acyl transferase domain CCNA_03402 PF16197 Ketoacyl-synthetase C-terminal extension CCNA_03406 PF01165 Ribosomal protein S21 CCNA_03408 PF13732 Domain of unknown function (DUF4162) CCNA_03408 PF00005 ABC transporter CCNA_03410 PF01551 Peptidase family M23 CCNA_03410 PF01476 LysM domain CCNA_03410 PF08525 Opacity-associated protein A N-terminal motif CCNA_03412 PF02233 NAD(P) transhydrogenase beta subunit CCNA_03413 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CCNA_03414 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CCNA_03414 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CCNA_03421 PF03109 ABC1 family CCNA_03422 PF00005 ABC transporter CCNA_03422 PF12558 ATP-binding cassette cobalt transporter CCNA_03424 PF00072 Response regulator receiver domain CCNA_03424 PF02954 Bacterial regulatory protein, Fis family CCNA_03424 PF00158 Sigma-54 interaction domain CCNA_03428 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CCNA_03430 PF00444 Ribosomal protein L36 CCNA_03431 PF13406 Transglycosylase SLT domain CCNA_03434 PF00072 Response regulator receiver domain CCNA_03434 PF00486 Transcriptional regulatory protein, C terminal CCNA_03436 PF00672 HAMP domain CCNA_03436 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03440 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CCNA_03441 PF01609 Transposase DDE domain CCNA_03442 PF13340 Putative transposase of IS4/5 family (DUF4096) CCNA_03443 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CCNA_03444 PF00593 TonB dependent receptor CCNA_03444 PF07715 TonB-dependent Receptor Plug Domain CCNA_03446 PF13193 AMP-binding enzyme C-terminal domain CCNA_03446 PF00501 AMP-binding enzyme CCNA_03449 PF10119 Predicted methyltransferase regulatory domain CCNA_03449 PF13847 Methyltransferase domain CCNA_03453 PF00440 Bacterial regulatory proteins, tetR family CCNA_03455 PF13439 Glycosyltransferase Family 4 CCNA_03455 PF00534 Glycosyl transferases group 1 CCNA_03456 PF07859 alpha/beta hydrolase fold CCNA_03459 PF08447 PAS fold CCNA_03459 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_03459 PF13426 PAS domain CCNA_03462 PF00266 Aminotransferase class-V CCNA_03463 PF02347 Glycine cleavage system P-protein CCNA_03464 PF01597 Glycine cleavage H-protein CCNA_03465 PF01571 Aminomethyltransferase folate-binding domain CCNA_03465 PF08669 Glycine cleavage T-protein C-terminal barrel domain CCNA_03468 PF00672 HAMP domain CCNA_03468 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CCNA_03469 PF05746 DALR anticodon binding domain CCNA_03469 PF00750 tRNA synthetases class I (R) CCNA_03469 PF03485 Arginyl tRNA synthetase N terminal domain CCNA_03471 PF02401 LytB protein CCNA_03475 PF01636 Phosphotransferase enzyme family CCNA_03476 PF00075 RNase H CCNA_03478 PF01965 DJ-1/PfpI family CCNA_03479 PF01638 HxlR-like helix-turn-helix CCNA_03480 PF05368 NmrA-like family CCNA_03482 PF01061 ABC-2 type transporter CCNA_03483 PF00005 ABC transporter CCNA_03485 PF01145 SPFH domain / Band 7 family CCNA_03485 PF16200 C-terminal region of band_7 CCNA_03489 PF03060 Nitronate monooxygenase CCNA_03493 PF00293 NUDIX domain CCNA_03496 PF03883 Peroxide stress protein YaaA CCNA_03500 PF01565 FAD binding domain CCNA_03500 PF02913 FAD linked oxidases, C-terminal domain CCNA_03501 PF01300 Telomere recombination CCNA_03501 PF03481 Putative GTP-binding controlling metal-binding CCNA_03502 PF01292 Prokaryotic cytochrome b561 CCNA_03503 PF04264 YceI-like domain CCNA_03504 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_03504 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_03504 PF12806 Acetyl-CoA dehydrogenase C-terminal like CCNA_03504 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_03505 PF00462 Glutaredoxin CCNA_03505 PF08534 Redoxin CCNA_03506 PF02622 Uncharacterized ACR, COG1678 CCNA_03507 PF03707 Bacterial signalling protein N terminal repeat CCNA_03507 PF00563 EAL domain CCNA_03507 PF00990 Diguanylate cyclase, GGDEF domain CCNA_03509 PF00675 Insulinase (Peptidase family M16) CCNA_03509 PF05193 Peptidase M16 inactive domain CCNA_03510 PF14821 Threonine synthase N terminus CCNA_03510 PF00291 Pyridoxal-phosphate dependent enzyme CCNA_03511 PF02104 SURF1 family CCNA_03513 PF00510 Cytochrome c oxidase subunit III CCNA_03514 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CCNA_03516 PF01040 UbiA prenyltransferase family CCNA_03517 PF00115 Cytochrome C and Quinol oxidase polypeptide I CCNA_03518 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CCNA_03518 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CCNA_03522 PF01523 Putative modulator of DNA gyrase CCNA_03524 PF00854 POT family CCNA_03528 PF04452 RNA methyltransferase CCNA_03529 PF03976 Polyphosphate kinase 2 (PPK2) CCNA_03533 PF00664 ABC transporter transmembrane region CCNA_03533 PF00005 ABC transporter CCNA_03534 PF01040 UbiA prenyltransferase family CCNA_03541 PF00248 Aldo/keto reductase family CCNA_03543 PF00171 Aldehyde dehydrogenase family CCNA_03544 PF01467 Cytidylyltransferase-like CCNA_03546 PF02590 Predicted SPOUT methyltransferase CCNA_03548 PF13180 PDZ domain CCNA_03548 PF03572 Peptidase family S41 CCNA_03549 PF00593 TonB dependent receptor CCNA_03549 PF07715 TonB-dependent Receptor Plug Domain CCNA_03553 PF00293 NUDIX domain CCNA_03556 PF00893 Small Multidrug Resistance protein CCNA_03558 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CCNA_03560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CCNA_03560 PF02874 ATP synthase alpha/beta family, beta-barrel domain CCNA_03561 PF00231 ATP synthase CCNA_03562 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CCNA_03562 PF02874 ATP synthase alpha/beta family, beta-barrel domain CCNA_03562 PF00306 ATP synthase alpha/beta chain, C terminal domain CCNA_03563 PF00213 ATP synthase delta (OSCP) subunit CCNA_03567 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CCNA_03567 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CCNA_03567 PF02770 Acyl-CoA dehydrogenase, middle domain CCNA_03569 PF04536 TPM domain CCNA_03573 PF07969 Amidohydrolase family CCNA_03574 PF00593 TonB dependent receptor CCNA_03574 PF07715 TonB-dependent Receptor Plug Domain CCNA_03575 PF02803 Thiolase, C-terminal domain CCNA_03575 PF00108 Thiolase, N-terminal domain CCNA_03577 PF01612 3'-5' exonuclease CCNA_03577 PF00476 DNA polymerase family A CCNA_03577 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CCNA_03577 PF01367 5'-3' exonuclease, C-terminal SAM fold CCNA_03578 PF16124 RecQ zinc-binding CCNA_03578 PF09382 RQC domain CCNA_03578 PF00270 DEAD/DEAH box helicase CCNA_03578 PF00570 HRDC domain CCNA_03578 PF00271 Helicase conserved C-terminal domain CCNA_03581 PF00892 EamA-like transporter family CCNA_03582 PF00459 Inositol monophosphatase family CCNA_03585 PF00072 Response regulator receiver domain CCNA_03586 PF03705 CheR methyltransferase, all-alpha domain CCNA_03586 PF01739 CheR methyltransferase, SAM binding domain CCNA_03588 PF12282 Signal transduction histidine kinase CCNA_03588 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03588 PF07568 Histidine kinase CCNA_03589 PF08281 Sigma-70, region 4 CCNA_03589 PF04542 Sigma-70 region 2 CCNA_03591 PF00072 Response regulator receiver domain CCNA_03592 PF08212 Lipocalin-like domain CCNA_03594 PF02146 Sir2 family CCNA_03595 PF01209 ubiE/COQ5 methyltransferase family CCNA_03598 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03598 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03599 PF02774 Semialdehyde dehydrogenase, dimerisation domain CCNA_03599 PF01118 Semialdehyde dehydrogenase, NAD binding domain CCNA_03601 PF03006 Haemolysin-III related CCNA_03603 PF00144 Beta-lactamase CCNA_03607 PF03477 ATP cone domain CCNA_03607 PF02867 Ribonucleotide reductase, barrel domain CCNA_03607 PF00317 Ribonucleotide reductase, all-alpha domain CCNA_03610 PF01209 ubiE/COQ5 methyltransferase family CCNA_03611 PF00999 Sodium/hydrogen exchanger family CCNA_03611 PF02254 TrkA-N domain CCNA_03613 PF01575 MaoC like domain CCNA_03618 PF02630 SCO1/SenC CCNA_03619 PF01431 Peptidase family M13 CCNA_03619 PF05649 Peptidase family M13 CCNA_03625 PF03466 LysR substrate binding domain CCNA_03625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_03626 PF01634 ATP phosphoribosyltransferase CCNA_03628 PF03129 Anticodon binding domain CCNA_03628 PF13393 Histidyl-tRNA synthetase CCNA_03630 PF13274 Protein of unknown function (DUF4065) CCNA_03636 PF04055 Radical SAM superfamily CCNA_03636 PF06968 Biotin and Thiamin Synthesis associated domain CCNA_03637 PF01928 CYTH domain CCNA_03639 PF00111 2Fe-2S iron-sulfur cluster binding domain CCNA_03640 PF14759 Reductase C-terminal CCNA_03640 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_03641 PF13085 2Fe-2S iron-sulfur cluster binding domain CCNA_03641 PF13237 4Fe-4S dicluster domain CCNA_03642 PF00890 FAD binding domain CCNA_03642 PF02910 Fumarate reductase flavoprotein C-term CCNA_03644 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CCNA_03645 PF00293 NUDIX domain CCNA_03646 PF03969 AFG1-like ATPase CCNA_03648 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CCNA_03649 PF01636 Phosphotransferase enzyme family CCNA_03650 PF12804 MobA-like NTP transferase domain CCNA_03652 PF12705 PD-(D/E)XK nuclease superfamily CCNA_03652 PF13361 UvrD-like helicase C-terminal domain CCNA_03652 PF00580 UvrD/REP helicase N-terminal domain CCNA_03653 PF00085 Thioredoxin CCNA_03655 PF02875 Mur ligase family, glutamate ligase domain CCNA_03655 PF08245 Mur ligase middle domain CCNA_03656 PF01039 Carboxyl transferase domain CCNA_03657 PF00290 Tryptophan synthase alpha chain CCNA_03658 PF00291 Pyridoxal-phosphate dependent enzyme CCNA_03659 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CCNA_03660 PF06233 Usg-like family CCNA_03663 PF00390 Malic enzyme, N-terminal domain CCNA_03663 PF03949 Malic enzyme, NAD binding domain CCNA_03663 PF01515 Phosphate acetyl/butaryl transferase CCNA_03664 PF01113 Dihydrodipicolinate reductase, N-terminus CCNA_03664 PF05173 Dihydrodipicolinate reductase, C-terminus CCNA_03672 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CCNA_03672 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CCNA_03675 PF07536 HWE histidine kinase CCNA_03675 PF13426 PAS domain CCNA_03675 PF13581 Histidine kinase-like ATPase domain CCNA_03676 PF00583 Acetyltransferase (GNAT) family CCNA_03677 PF02515 CoA-transferase family III CCNA_03681 PF00005 ABC transporter CCNA_03682 PF01557 Fumarylacetoacetate (FAA) hydrolase family CCNA_03683 PF13417 Glutathione S-transferase, N-terminal domain CCNA_03684 PF00484 Carbonic anhydrase CCNA_03685 PF00912 Transglycosylase CCNA_03685 PF06832 Penicillin-Binding Protein C-terminus Family CCNA_03685 PF00905 Penicillin binding protein transpeptidase domain CCNA_03686 PF17962 Bacterial macroglobulin domain 6 CCNA_03686 PF07678 A-macroglobulin TED domain CCNA_03686 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CCNA_03686 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CCNA_03686 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CCNA_03686 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CCNA_03686 PF07703 Alpha-2-macroglobulin bait region domain CCNA_03686 PF00207 Alpha-2-macroglobulin family CCNA_03686 PF01835 MG2 domain CCNA_03688 PF01037 Lrp/AsnC ligand binding domain CCNA_03689 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CCNA_03689 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CCNA_03690 PF02348 Cytidylyltransferase CCNA_03693 PF02633 Creatinine amidohydrolase CCNA_03695 PF00171 Aldehyde dehydrogenase family CCNA_03696 PF16177 Acetyl-coenzyme A synthetase N-terminus CCNA_03696 PF00501 AMP-binding enzyme CCNA_03696 PF13193 AMP-binding enzyme C-terminal domain CCNA_03698 PF04134 Protein of unknown function, DUF393 CCNA_03699 PF00675 Insulinase (Peptidase family M16) CCNA_03699 PF05193 Peptidase M16 inactive domain CCNA_03700 PF01741 Large-conductance mechanosensitive channel, MscL CCNA_03701 PF00216 Bacterial DNA-binding protein CCNA_03702 PF00575 S1 RNA binding domain CCNA_03703 PF02224 Cytidylate kinase CCNA_03704 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CCNA_03706 PF00011 Hsp20/alpha crystallin family CCNA_03708 PF01609 Transposase DDE domain CCNA_03709 PF13340 Putative transposase of IS4/5 family (DUF4096) CCNA_03710 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CCNA_03711 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CCNA_03711 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CCNA_03713 PF04963 Sigma-54 factor, core binding domain CCNA_03713 PF04552 Sigma-54, DNA binding domain CCNA_03713 PF00309 Sigma-54 factor, Activator interacting domain (AID) CCNA_03714 PF00005 ABC transporter CCNA_03717 PF00570 HRDC domain CCNA_03717 PF01612 3'-5' exonuclease CCNA_03718 PF13460 NAD(P)H-binding CCNA_03719 PF02673 Bacitracin resistance protein BacA CCNA_03721 PF07992 Pyridine nucleotide-disulphide oxidoreductase CCNA_03721 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CCNA_03722 PF01645 Conserved region in glutamate synthase CCNA_03722 PF04898 Glutamate synthase central domain CCNA_03722 PF01493 GXGXG motif CCNA_03722 PF00310 Glutamine amidotransferases class-II CCNA_03725 PF04675 DNA ligase N terminus CCNA_03725 PF04679 ATP dependent DNA ligase C terminal region CCNA_03725 PF01068 ATP dependent DNA ligase domain CCNA_03726 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CCNA_03727 PF05552 Conserved TM helix CCNA_03727 PF00924 Mechanosensitive ion channel CCNA_03729 PF00923 Transaldolase/Fructose-6-phosphate aldolase CCNA_03730 PF04321 RmlD substrate binding domain CCNA_03733 PF00483 Nucleotidyl transferase CCNA_03733 PF01050 Mannose-6-phosphate isomerase CCNA_03734 PF02540 NAD synthase CCNA_03734 PF00795 Carbon-nitrogen hydrolase CCNA_03735 PF00456 Transketolase, thiamine diphosphate binding domain CCNA_03735 PF02779 Transketolase, pyrimidine binding domain CCNA_03735 PF02780 Transketolase, C-terminal domain CCNA_03736 PF02325 YGGT family CCNA_03737 PF02594 Uncharacterised ACR, YggU family COG1872 CCNA_03738 PF00072 Response regulator receiver domain CCNA_03738 PF00512 His Kinase A (phospho-acceptor) domain CCNA_03738 PF09308 LuxQ, periplasmic CCNA_03738 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCNA_03739 PF03852 DNA mismatch endonuclease Vsr CCNA_03740 PF00291 Pyridoxal-phosphate dependent enzyme CCNA_03741 PF00145 C-5 cytosine-specific DNA methylase CCNA_03743 PF00144 Beta-lactamase CCNA_03744 PF16363 GDP-mannose 4,6 dehydratase CCNA_03745 PF00551 Formyl transferase CCNA_03746 PF07687 Peptidase dimerisation domain CCNA_03746 PF01546 Peptidase family M20/M25/M40 CCNA_03748 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CCNA_03749 PF12697 Alpha/beta hydrolase family CCNA_03750 PF13291 ACT domain CCNA_03750 PF00291 Pyridoxal-phosphate dependent enzyme CCNA_03751 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CCNA_03751 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CCNA_03752 PF00483 Nucleotidyl transferase CCNA_03753 PF08331 Domain of unknown function (DUF1730) CCNA_03754 PF00043 Glutathione S-transferase, C-terminal domain CCNA_03754 PF13417 Glutathione S-transferase, N-terminal domain CCNA_03755 PF00294 pfkB family carbohydrate kinase CCNA_03755 PF01467 Cytidylyltransferase-like CCNA_03756 PF16916 Dimerisation domain of Zinc Transporter CCNA_03756 PF01545 Cation efflux family CCNA_03757 PF00285 Citrate synthase, C-terminal domain CCNA_03758 PF00285 Citrate synthase, C-terminal domain CCNA_03763 PF00850 Histone deacetylase domain CCNA_03766 PF05239 PRC-barrel domain CCNA_03766 PF01782 RimM N-terminal domain CCNA_03767 PF00886 Ribosomal protein S16 CCNA_03768 PF00448 SRP54-type protein, GTPase domain CCNA_03768 PF02978 Signal peptide binding domain CCNA_03768 PF02881 SRP54-type protein, helical bundle domain CCNA_03770 PF00056 lactate/malate dehydrogenase, NAD binding domain CCNA_03770 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CCNA_03771 PF01575 MaoC like domain CCNA_03774 PF03328 HpcH/HpaI aldolase/citrate lyase family CCNA_03777 PF00248 Aldo/keto reductase family CCNA_03778 PF01027 Inhibitor of apoptosis-promoting Bax1 CCNA_03781 PF00330 Aconitase family (aconitate hydratase) CCNA_03781 PF00694 Aconitase C-terminal domain CCNA_03782 PF00005 ABC transporter CCNA_03783 PF03379 CcmB protein CCNA_03786 PF01578 Cytochrome C assembly protein CCNA_03788 PF08534 Redoxin CCNA_03791 PF12802 MarR family CCNA_03792 PF04279 Intracellular septation protein A CCNA_03793 PF00448 SRP54-type protein, GTPase domain CCNA_03793 PF02881 SRP54-type protein, helical bundle domain CCNA_03794 PF03458 UPF0126 domain CCNA_03796 PF03741 Integral membrane protein TerC family CCNA_03798 PF04055 Radical SAM superfamily CCNA_03798 PF00919 Uncharacterized protein family UPF0004 CCNA_03799 PF00106 short chain dehydrogenase CCNA_03800 PF01678 Diaminopimelate epimerase CCNA_03801 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CCNA_03801 PF00326 Prolyl oligopeptidase family CCNA_03802 PF00326 Prolyl oligopeptidase family CCNA_03802 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CCNA_03805 PF03551 Transcriptional regulator PadR-like family CCNA_03806 PF04333 MlaA lipoprotein CCNA_03808 PF02470 MlaD protein CCNA_03809 PF02405 Permease MlaE CCNA_03810 PF00005 ABC transporter CCNA_03811 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CCNA_03811 PF03466 LysR substrate binding domain CCNA_03812 PF02627 Carboxymuconolactone decarboxylase family CCNA_03816 PF01432 Peptidase family M3 CCNA_03817 PF01177 Asp/Glu/Hydantoin racemase CCNA_03819 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CCNA_03819 PF01580 FtsK/SpoIIIE family CCNA_03819 PF17854 FtsK alpha domain CCNA_03819 PF09397 Ftsk gamma domain CCNA_03822 PF06827 Zinc finger found in FPG and IleRS CCNA_03822 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CCNA_03822 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CCNA_03823 PF01209 ubiE/COQ5 methyltransferase family CCNA_03824 PF03109 ABC1 family CCNA_03827 PF02441 Flavoprotein CCNA_03827 PF04127 DNA / pantothenate metabolism flavoprotein CCNA_03828 PF00692 dUTPase CCNA_03830 PF13533 Biotin-lipoyl like CCNA_03831 PF07690 Major Facilitator Superfamily CCNA_03832 PF17934 Tetracyclin repressor-like, C-terminal domain CCNA_03832 PF00440 Bacterial regulatory proteins, tetR family CCNA_03835 PF02801 Beta-ketoacyl synthase, C-terminal domain CCNA_03835 PF00109 Beta-ketoacyl synthase, N-terminal domain CCNA_03836 PF07977 FabA-like domain CCNA_03838 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CCNA_03838 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CCNA_03839 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal CCNA_03839 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CCNA_03839 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CCNA_03840 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CCNA_03840 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CCNA_03841 PF08386 TAP-like protein CCNA_03841 PF00561 alpha/beta hydrolase fold CCNA_03842 PF00899 ThiF family CCNA_03843 PF00227 Proteasome subunit CCNA_03844 PF10431 C-terminal, D2-small domain, of ClpB protein CCNA_03844 PF07724 AAA domain (Cdc48 subfamily) CCNA_03844 PF00004 ATPase family associated with various cellular activities (AAA) CCNA_03845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CCNA_03845 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CCNA_03845 PF02805 Metal binding domain of Ada CCNA_03845 PF12833 Helix-turn-helix domain CCNA_03847 PF10576 Iron-sulfur binding domain of endonuclease III CCNA_03847 PF00730 HhH-GPD superfamily base excision DNA repair protein CCNA_03847 PF00633 Helix-hairpin-helix motif CCNA_03849 PF00294 pfkB family carbohydrate kinase CCNA_03850 PF00475 Imidazoleglycerol-phosphate dehydratase CCNA_03851 PF00117 Glutamine amidotransferase class-I CCNA_03852 PF00977 Histidine biosynthesis protein CCNA_03853 PF00977 Histidine biosynthesis protein CCNA_03854 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CCNA_03858 PF02556 Preprotein translocase subunit SecB CCNA_03859 PF00486 Transcriptional regulatory protein, C terminal CCNA_03859 PF00072 Response regulator receiver domain CCNA_03861 PF01168 Alanine racemase, N-terminal domain CCNA_03862 PF02581 Thiamine monophosphate synthase CCNA_03864 PF12100 Domain of unknown function (DUF3576) CCNA_03865 PF13603 Leucyl-tRNA synthetase, Domain 2 CCNA_03865 PF00133 tRNA synthetases class I (I, L, M and V) CCNA_03865 PF09334 tRNA synthetases class I (M) CCNA_03865 PF08264 Anticodon-binding domain of tRNA CCNA_03868 PF17762 HTH domain found in ParB protein CCNA_03868 PF02195 ParB-like nuclease domain CCNA_03869 PF13614 AAA domain CCNA_03870 PF02527 rRNA small subunit methyltransferase G CCNA_03871 PF13932 GidA associated domain CCNA_03871 PF01134 Glucose inhibited division protein A CCNA_03872 PF10396 GTP-binding protein TrmE N-terminus CCNA_03872 PF12631 MnmE helical domain CCNA_03872 PF01926 50S ribosome-binding GTPase CCNA_03874 PF01738 Dienelactone hydrolase family CCNA_03875 PF00107 Zinc-binding dehydrogenase CCNA_03875 PF08240 Alcohol dehydrogenase GroES-like domain CCNA_03876 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CCNA_03876 PF07498 Rho termination factor, N-terminal domain CCNA_03876 PF07497 Rho termination factor, RNA-binding domain CCNA_03877 PF03653 Uncharacterised protein family (UPF0093) CCNA_03878 PF00762 Ferrochelatase CCNA_03879 PF01208 Uroporphyrinogen decarboxylase (URO-D) CCNA_03881 PF00753 Metallo-beta-lactamase superfamily CCNA_03892 PF01966 HD domain CCNA_03903 PF13340 Putative transposase of IS4/5 family (DUF4096) CCNA_03905 PF06532 Negative regulator of sigma F CCNA_03921 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CCNA_03921 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CCNA_03921 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CCNA_03989 PF00583 Acetyltransferase (GNAT) family CCNA_03989 PF00696 Amino acid kinase family CCNA_03998 PF00534 Glycosyl transferases group 1 CCNA_03998 PF13579 Glycosyl transferase 4-like domain CCNA_R0096 PF05190 MutS family domain IV CCNA_R0096 PF05188 MutS domain II CCNA_R0096 PF01624 MutS domain I CCNA_R0096 PF05192 MutS domain III CCNA_R0096 PF00488 MutS domain V