CFLA_RS00005 SM00382 ATPases associated with a variety of cellular activities CFLA_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CFLA_RS00010 SM00480 DNA polymerase III beta subunit CFLA_RS00015 SM01350 CFLA_RS00015 CFLA_RS00030 SM00387 Histidine kinase-like ATPases CFLA_RS00030 SM00433 TopoisomeraseII CFLA_RS00035 SM00434 DNA Topoisomerase IV CFLA_RS00070 SM00357 Cold shock protein domain CFLA_RS00085 SM00060 Fibronectin type 3 domain CFLA_RS00085 SM00637 CFLA_RS00085 CFLA_RS00085 SM01067 Cellulose binding domain CFLA_RS00130 SM00220 Serine/Threonine protein kinases, catalytic domain CFLA_RS00130 SM00740 CFLA_RS00130 CFLA_RS00150 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS00150 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CFLA_RS00155 SM00240 Forkhead associated domain CFLA_RS00160 SM00240 Forkhead associated domain CFLA_RS00190 SM00316 Ribosomal protein S1-like RNA-binding domain CFLA_RS00190 SM00322 K homology RNA-binding domain CFLA_RS00245 SM00382 ATPases associated with a variety of cellular activities CFLA_RS00260 SM00421 helix_turn_helix, Lux Regulon CFLA_RS00260 SM00448 cheY-homologous receiver domain CFLA_RS00275 SM00354 helix_turn _helix lactose operon repressor CFLA_RS00280 SM00382 ATPases associated with a variety of cellular activities CFLA_RS00315 SM00564 beta-propeller repeat CFLA_RS00325 SM00564 beta-propeller repeat CFLA_RS00330 SM00564 beta-propeller repeat CFLA_RS00335 SM00564 beta-propeller repeat CFLA_RS00340 SM00564 beta-propeller repeat CFLA_RS00345 SM00564 beta-propeller repeat CFLA_RS00375 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS00410 SM00226 Low molecular weight phosphatase family CFLA_RS00490 SM00421 helix_turn_helix, Lux Regulon CFLA_RS00515 SM00382 ATPases associated with a variety of cellular activities CFLA_RS00570 SM00855 Phosphoglycerate mutase family CFLA_RS00575 SM00382 ATPases associated with a variety of cellular activities CFLA_RS00575 SM00487 DEAD-like helicases superfamily CFLA_RS00575 SM00490 helicase superfamily c-terminal domain CFLA_RS00575 SM00847 Helicase associated domain (HA2) Add an annotation CFLA_RS00670 SM00244 prohibitin homologues CFLA_RS00695 SM00637 CFLA_RS00695 CFLA_RS00695 SM01067 Cellulose binding domain CFLA_RS00710 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS00720 SM00382 ATPases associated with a variety of cellular activities CFLA_RS00740 SM01068 Putative carbohydrate binding domain CFLA_RS00780 SM00327 von Willebrand factor (vWF) type A domain CFLA_RS00800 SM00833 Cobalamin synthesis protein cobW C-terminal domain CFLA_RS00840 SM00460 Transglutaminase/protease-like homologues CFLA_RS00870 SM00637 CFLA_RS00870 CFLA_RS00880 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CFLA_RS00880 SM00267 diguanylate cyclase CFLA_RS00885 SM00637 CFLA_RS00885 CFLA_RS00915 SM00354 helix_turn _helix lactose operon repressor CFLA_RS00930 SM01120 CFLA_RS00930 CFLA_RS00945 SM00382 ATPases associated with a variety of cellular activities CFLA_RS00950 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS01110 SM00382 ATPases associated with a variety of cellular activities CFLA_RS01190 SM00052 Putative diguanylate phosphodiesterase CFLA_RS01190 SM00267 diguanylate cyclase CFLA_RS01220 SM00637 CFLA_RS01220 CFLA_RS01230 SM00637 CFLA_RS01230 CFLA_RS01235 SM00633 Glycosyl hydrolase family 10 CFLA_RS01240 SM00637 CFLA_RS01240 CFLA_RS01245 SM00637 CFLA_RS01245 CFLA_RS01270 SM00382 ATPases associated with a variety of cellular activities CFLA_RS01410 SM00421 helix_turn_helix, Lux Regulon CFLA_RS01410 SM00448 cheY-homologous receiver domain CFLA_RS01435 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS01440 SM00014 Acid phosphatase homologues CFLA_RS01445 SM00382 ATPases associated with a variety of cellular activities CFLA_RS01460 SM00062 Bacterial periplasmic substrate-binding proteins CFLA_RS01500 SM00881 CoA binding domain CFLA_RS01530 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS01580 SM00357 Cold shock protein domain CFLA_RS01590 SM01266 CFLA_RS01590 CFLA_RS01600 SM00637 CFLA_RS01600 CFLA_RS01610 SM00855 Phosphoglycerate mutase family CFLA_RS01615 SM00450 Rhodanese Homology Domain CFLA_RS01620 SM00344 helix_turn_helix ASNC type CFLA_RS01660 SM00507 HNH nucleases CFLA_RS01665 SM00342 helix_turn_helix, arabinose operon control protein CFLA_RS01665 SM00871 Bacterial transcription activator, effector binding domain CFLA_RS01705 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS01710 SM00637 CFLA_RS01710 CFLA_RS01760 SM00857 Resolvase, N terminal domain CFLA_RS01765 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS01785 SM00387 Histidine kinase-like ATPases CFLA_RS01785 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS01840 SM00450 Rhodanese Homology Domain CFLA_RS01860 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS01890 SM00342 helix_turn_helix, arabinose operon control protein CFLA_RS01900 SM00458 Ricin-type beta-trefoil CFLA_RS01900 SM00633 Glycosyl hydrolase family 10 CFLA_RS01915 SM00422 helix_turn_helix, mercury resistance CFLA_RS01930 SM00458 Ricin-type beta-trefoil CFLA_RS01935 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS01950 SM00226 Low molecular weight phosphatase family CFLA_RS01955 SM00226 Low molecular weight phosphatase family CFLA_RS01955 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS02005 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CFLA_RS02025 SM00860 SMI1 / KNR4 family CFLA_RS02060 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS02110 SM00450 Rhodanese Homology Domain CFLA_RS02120 SM00422 helix_turn_helix, mercury resistance CFLA_RS02130 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS02155 SM00344 helix_turn_helix ASNC type CFLA_RS02225 SM00271 DnaJ molecular chaperone homology domain CFLA_RS02230 SM00422 helix_turn_helix, mercury resistance CFLA_RS02235 SM00382 ATPases associated with a variety of cellular activities CFLA_RS02260 SM00496 Intron-encoded nuclease repeat 2 CFLA_RS02285 SM00450 Rhodanese Homology Domain CFLA_RS02290 SM00458 Ricin-type beta-trefoil CFLA_RS02290 SM00606 Cellulose Binding Domain Type IV CFLA_RS02295 SM00458 Ricin-type beta-trefoil CFLA_RS02335 SM01236 CFLA_RS02335 CFLA_RS02340 SM00704 CDGSH-type zinc finger. Function unknown. CFLA_RS02360 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS02465 SM00637 CFLA_RS02465 CFLA_RS02475 SM00450 Rhodanese Homology Domain CFLA_RS02525 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS02525 SM01043 Bacterial transcriptional activator domain CFLA_RS02625 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CFLA_RS02625 SM00758 CFLA_RS02625 CFLA_RS02655 SM00387 Histidine kinase-like ATPases CFLA_RS02680 SM01005 Alanine racemase, C-terminal domain CFLA_RS02705 SM00382 ATPases associated with a variety of cellular activities CFLA_RS02750 SM00855 Phosphoglycerate mutase family CFLA_RS02755 SM00382 ATPases associated with a variety of cellular activities CFLA_RS02755 SM01086 C-terminal, D2-small domain, of ClpB protein CFLA_RS02790 SM00829 Enoylreductase CFLA_RS02845 SM00478 endonuclease III CFLA_RS02845 SM00525 CFLA_RS02845 CFLA_RS02860 SM00382 ATPases associated with a variety of cellular activities CFLA_RS02875 SM00448 cheY-homologous receiver domain CFLA_RS02875 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS02880 SM00014 Acid phosphatase homologues CFLA_RS02885 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CFLA_RS02885 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CFLA_RS02885 SM00493 CFLA_RS02885 CFLA_RS02910 SM00382 ATPases associated with a variety of cellular activities CFLA_RS02985 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CFLA_RS02985 SM00475 5'-3' exonuclease CFLA_RS03025 SM00899 CFLA_RS03025 CFLA_RS03070 SM00829 Enoylreductase CFLA_RS03110 SM00857 Resolvase, N terminal domain CFLA_RS03160 SM00382 ATPases associated with a variety of cellular activities CFLA_RS03220 SM00633 Glycosyl hydrolase family 10 CFLA_RS03260 SM00421 helix_turn_helix, Lux Regulon CFLA_RS03260 SM00448 cheY-homologous receiver domain CFLA_RS03290 SM00855 Phosphoglycerate mutase family CFLA_RS03300 SM00387 Histidine kinase-like ATPases CFLA_RS03300 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS03305 SM00448 cheY-homologous receiver domain CFLA_RS03305 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS03325 SM00382 ATPases associated with a variety of cellular activities CFLA_RS03335 SM01058 CarD-like/TRCF domain CFLA_RS03355 SM00829 Enoylreductase CFLA_RS03375 SM00840 CFLA_RS03375 CFLA_RS03380 SM00967 RNA 2'-O ribose methyltransferase substrate binding CFLA_RS03390 SM00382 ATPases associated with a variety of cellular activities CFLA_RS03405 SM00220 Serine/Threonine protein kinases, catalytic domain CFLA_RS03435 SM00518 AP endonuclease family 2 CFLA_RS03440 SM00421 helix_turn_helix, Lux Regulon CFLA_RS03440 SM00448 cheY-homologous receiver domain CFLA_RS03460 SM00986 Uracil DNA glycosylase superfamily CFLA_RS03460 SM00987 UreE urease accessory protein, C-terminal domain CFLA_RS03550 SM00382 ATPases associated with a variety of cellular activities CFLA_RS03555 SM00382 ATPases associated with a variety of cellular activities CFLA_RS03560 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS03560 SM00895 CFLA_RS03560 CFLA_RS03580 SM00796 Allophanate hydrolase subunit 1 CFLA_RS03580 SM00797 Allophanate hydrolase subunit 2 CFLA_RS03580 SM00878 Biotin carboxylase C-terminal domain CFLA_RS03610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS03610 SM00387 Histidine kinase-like ATPases CFLA_RS03610 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS03615 SM00448 cheY-homologous receiver domain CFLA_RS03615 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS03625 SM00100 Cyclic nucleotide-monophosphate binding domain CFLA_RS03625 SM00419 helix_turn_helix, cAMP Regulatory protein CFLA_RS03655 SM00487 DEAD-like helicases superfamily CFLA_RS03655 SM00490 helicase superfamily c-terminal domain CFLA_RS03770 SM00357 Cold shock protein domain CFLA_RS03795 SM00226 Low molecular weight phosphatase family CFLA_RS03860 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS03885 SM00529 Helix-turn-helix diphteria tox regulatory element CFLA_RS03885 SM00899 CFLA_RS03885 CFLA_RS03895 SM00507 HNH nucleases CFLA_RS03910 SM00344 helix_turn_helix ASNC type CFLA_RS04075 SM00633 Glycosyl hydrolase family 10 CFLA_RS04080 SM00487 DEAD-like helicases superfamily CFLA_RS04080 SM00490 helicase superfamily c-terminal domain CFLA_RS04105 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CFLA_RS04120 SM00354 helix_turn _helix lactose operon repressor CFLA_RS04135 SM00421 helix_turn_helix, Lux Regulon CFLA_RS04135 SM00448 cheY-homologous receiver domain CFLA_RS04155 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS04185 SM00858 CFLA_RS04185 CFLA_RS04205 SM00852 Probable molybdopterin binding domain CFLA_RS04280 SM01208 CFLA_RS04280 CFLA_RS04285 SM01208 CFLA_RS04285 CFLA_RS04290 SM00650 Ribosomal RNA adenine dimethylases CFLA_RS04305 SM00421 helix_turn_helix, Lux Regulon CFLA_RS04305 SM00448 cheY-homologous receiver domain CFLA_RS04310 SM00382 ATPases associated with a variety of cellular activities CFLA_RS04325 SM00448 cheY-homologous receiver domain CFLA_RS04325 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS04330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS04330 SM00387 Histidine kinase-like ATPases CFLA_RS04330 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS04345 SM00382 ATPases associated with a variety of cellular activities CFLA_RS04350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS04360 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS04390 SM00822 CFLA_RS04390 CFLA_RS04425 SM01400 CFLA_RS04425 CFLA_RS04470 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CFLA_RS04470 SM00282 Laminin G domain CFLA_RS04470 SM00560 LamG-like jellyroll fold domain CFLA_RS04510 SM00487 DEAD-like helicases superfamily CFLA_RS04510 SM00490 helicase superfamily c-terminal domain CFLA_RS04510 SM00982 CFLA_RS04510 CFLA_RS04510 SM01058 CarD-like/TRCF domain CFLA_RS04535 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CFLA_RS04535 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CFLA_RS04545 SM00633 Glycosyl hydrolase family 10 CFLA_RS04545 SM00637 CFLA_RS04545 CFLA_RS04555 SM01192 CFLA_RS04555 CFLA_RS04555 SM01193 CFLA_RS04555 CFLA_RS04595 SM00116 Domain in cystathionine beta-synthase and other proteins. CFLA_RS04595 SM01091 Transporter associated domain CFLA_RS04630 SM00382 ATPases associated with a variety of cellular activities CFLA_RS04645 SM00116 Domain in cystathionine beta-synthase and other proteins. CFLA_RS04755 SM00670 Large family of predicted nucleotide-binding domains CFLA_RS04760 SM00758 CFLA_RS04760 CFLA_RS04780 SM00028 Tetratricopeptide repeats CFLA_RS04780 SM00671 Sel1-like repeats. CFLA_RS04810 SM00382 ATPases associated with a variety of cellular activities CFLA_RS04815 SM00382 ATPases associated with a variety of cellular activities CFLA_RS04850 SM00382 ATPases associated with a variety of cellular activities CFLA_RS04860 SM00947 Carbonic anhydrase CFLA_RS04905 SM00382 ATPases associated with a variety of cellular activities CFLA_RS04960 SM00382 ATPases associated with a variety of cellular activities CFLA_RS04970 SM00838 Elongation factor G C-terminus CFLA_RS04985 SM00903 Flavin reductase like domain CFLA_RS05030 SM00729 Elongator protein 3, MiaB family, Radical SAM CFLA_RS05075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFLA_RS05140 SM00382 ATPases associated with a variety of cellular activities CFLA_RS05160 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CFLA_RS05175 SM01133 CFLA_RS05175 CFLA_RS05205 SM00878 Biotin carboxylase C-terminal domain CFLA_RS05215 SM00756 CFLA_RS05215 CFLA_RS05250 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CFLA_RS05295 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS05295 SM00895 CFLA_RS05295 CFLA_RS05300 SM00836 DALR anticodon binding domain CFLA_RS05300 SM01016 Arginyl tRNA synthetase N terminal dom CFLA_RS05330 SM00357 Cold shock protein domain CFLA_RS05330 SM00382 ATPases associated with a variety of cellular activities CFLA_RS05330 SM00959 Rho termination factor, N-terminal domain CFLA_RS05345 SM00937 CFLA_RS05345 CFLA_RS05400 SM00382 ATPases associated with a variety of cellular activities CFLA_RS05455 SM00354 helix_turn _helix lactose operon repressor CFLA_RS05520 SM00642 Alpha-amylase domain CFLA_RS05535 SM00642 Alpha-amylase domain CFLA_RS05540 SM00642 Alpha-amylase domain CFLA_RS05560 SM00642 Alpha-amylase domain CFLA_RS05565 SM00893 Electron transfer flavoprotein domain CFLA_RS05570 SM00893 Electron transfer flavoprotein domain CFLA_RS05620 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFLA_RS05620 SM00292 breast cancer carboxy-terminal domain CFLA_RS05620 SM00532 Ligase N family CFLA_RS05655 SM00845 GatB domain CFLA_RS05680 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS05685 SM00354 helix_turn _helix lactose operon repressor CFLA_RS05705 SM01217 CFLA_RS05705 CFLA_RS05715 SM00052 Putative diguanylate phosphodiesterase CFLA_RS05715 SM00267 diguanylate cyclase CFLA_RS05790 SM00240 Forkhead associated domain CFLA_RS05790 SM00382 ATPases associated with a variety of cellular activities CFLA_RS05795 SM00060 Fibronectin type 3 domain CFLA_RS05800 SM00060 Fibronectin type 3 domain CFLA_RS05805 SM00382 ATPases associated with a variety of cellular activities CFLA_RS05815 SM00460 Transglutaminase/protease-like homologues CFLA_RS05820 SM00220 Serine/Threonine protein kinases, catalytic domain CFLA_RS05830 SM00642 Alpha-amylase domain CFLA_RS05840 SM00382 ATPases associated with a variety of cellular activities CFLA_RS05890 SM01022 CFLA_RS05890 CFLA_RS05895 SM01329 CFLA_RS05895 CFLA_RS05910 SM00917 LeuA allosteric (dimerisation) domain CFLA_RS05975 SM00487 DEAD-like helicases superfamily CFLA_RS05975 SM00490 helicase superfamily c-terminal domain CFLA_RS06025 SM00354 helix_turn _helix lactose operon repressor CFLA_RS06065 SM00954 Region found in RelA / SpoT proteins CFLA_RS06115 SM00382 ATPases associated with a variety of cellular activities CFLA_RS06145 SM00342 helix_turn_helix, arabinose operon control protein CFLA_RS06150 SM00861 Transketolase, pyrimidine binding domain CFLA_RS06155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS06155 SM00387 Histidine kinase-like ATPases CFLA_RS06155 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS06160 SM00448 cheY-homologous receiver domain CFLA_RS06160 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS06165 SM00116 Domain in cystathionine beta-synthase and other proteins. CFLA_RS06165 SM01091 Transporter associated domain CFLA_RS06170 SM00116 Domain in cystathionine beta-synthase and other proteins. CFLA_RS06220 SM00857 Resolvase, N terminal domain CFLA_RS06265 SM00937 CFLA_RS06265 CFLA_RS06270 SM00382 ATPases associated with a variety of cellular activities CFLA_RS06295 SM00487 DEAD-like helicases superfamily CFLA_RS06295 SM00490 helicase superfamily c-terminal domain CFLA_RS06345 SM00020 Trypsin-like serine protease CFLA_RS06395 SM00448 cheY-homologous receiver domain CFLA_RS06405 SM00481 DNA polymerase alpha chain like domain CFLA_RS06415 SM00091 PAS domain CFLA_RS06415 SM00387 Histidine kinase-like ATPases CFLA_RS06415 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS06440 SM00327 von Willebrand factor (vWF) type A domain CFLA_RS06445 SM00458 Ricin-type beta-trefoil CFLA_RS06465 SM00822 CFLA_RS06465 CFLA_RS06505 SM00382 ATPases associated with a variety of cellular activities CFLA_RS06515 SM00448 cheY-homologous receiver domain CFLA_RS06515 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS06520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS06520 SM00387 Histidine kinase-like ATPases CFLA_RS06520 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS06525 SM00824 Thioesterase CFLA_RS06555 SM00855 Phosphoglycerate mutase family CFLA_RS06575 SM00363 S4 RNA-binding domain CFLA_RS06580 SM00637 CFLA_RS06580 CFLA_RS06595 SM00637 CFLA_RS06595 CFLA_RS06610 SM00458 Ricin-type beta-trefoil CFLA_RS06620 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS06635 SM00487 DEAD-like helicases superfamily CFLA_RS06675 SM00382 ATPases associated with a variety of cellular activities CFLA_RS06715 SM00883 Chaperonin 10 Kd subunit CFLA_RS06750 SM00382 ATPases associated with a variety of cellular activities CFLA_RS06765 SM00479 CFLA_RS06765 CFLA_RS06815 SM00382 ATPases associated with a variety of cellular activities CFLA_RS06940 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS06950 SM00881 CoA binding domain CFLA_RS06970 SM00062 Bacterial periplasmic substrate-binding proteins CFLA_RS06975 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07000 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS07045 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07045 SM00994 ClpX C4-type zinc finger CFLA_RS07045 SM01086 C-terminal, D2-small domain, of ClpB protein CFLA_RS07050 SM00830 Chorismate mutase type II CFLA_RS07070 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07080 SM00062 Bacterial periplasmic substrate-binding proteins CFLA_RS07115 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS07120 SM00829 Enoylreductase CFLA_RS07165 SM00240 Forkhead associated domain CFLA_RS07165 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07200 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07220 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS07245 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07270 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07275 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07365 SM01120 CFLA_RS07365 CFLA_RS07380 SM00562 CFLA_RS07380 CFLA_RS07385 SM00968 SMC proteins Flexible Hinge Domain CFLA_RS07395 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07395 SM00962 SRP54-type protein, GTPase domain CFLA_RS07395 SM00963 SRP54-type protein, helical bundle domain CFLA_RS07405 SM00938 Nitrogen regulatory protein P-II CFLA_RS07410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFLA_RS07415 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07415 SM00962 SRP54-type protein, GTPase domain CFLA_RS07415 SM00963 SRP54-type protein, helical bundle domain CFLA_RS07470 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07545 SM00344 helix_turn_helix ASNC type CFLA_RS07560 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07575 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFLA_RS07595 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CFLA_RS07595 SM01232 CFLA_RS07595 CFLA_RS07615 SM00316 Ribosomal protein S1-like RNA-binding domain CFLA_RS07615 SM00322 K homology RNA-binding domain CFLA_RS07650 SM00409 Immunoglobulin CFLA_RS07655 SM00904 Riboflavin kinase CFLA_RS07660 SM01387 CFLA_RS07660 CFLA_RS07665 SM00316 Ribosomal protein S1-like RNA-binding domain CFLA_RS07665 SM00322 K homology RNA-binding domain CFLA_RS07720 SM01130 CFLA_RS07720 CFLA_RS07725 SM00849 Metallo-beta-lactamase superfamily CFLA_RS07730 SM00342 helix_turn_helix, arabinose operon control protein CFLA_RS07745 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07745 SM00843 CFLA_RS07745 CFLA_RS07750 SM00052 Putative diguanylate phosphodiesterase CFLA_RS07750 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CFLA_RS07750 SM00091 PAS domain CFLA_RS07750 SM00267 diguanylate cyclase CFLA_RS07755 SM00854 Bacterial capsule synthesis protein PGA_cap CFLA_RS07770 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS07775 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CFLA_RS07775 SM01232 CFLA_RS07775 CFLA_RS07780 SM00487 DEAD-like helicases superfamily CFLA_RS07780 SM00490 helicase superfamily c-terminal domain CFLA_RS07800 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07810 SM00322 K homology RNA-binding domain CFLA_RS07810 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFLA_RS07825 SM00062 Bacterial periplasmic substrate-binding proteins CFLA_RS07830 SM00382 ATPases associated with a variety of cellular activities CFLA_RS07835 SM00729 Elongator protein 3, MiaB family, Radical SAM CFLA_RS07890 SM00487 DEAD-like helicases superfamily CFLA_RS07890 SM00491 CFLA_RS07890 CFLA_RS07930 SM00637 CFLA_RS07930 CFLA_RS07950 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS07950 SM00448 cheY-homologous receiver domain CFLA_RS07955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS07955 SM00387 Histidine kinase-like ATPases CFLA_RS07955 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS07960 SM00448 cheY-homologous receiver domain CFLA_RS07970 SM00357 Cold shock protein domain CFLA_RS07990 SM00460 Transglutaminase/protease-like homologues CFLA_RS08060 SM00864 Tubulin/FtsZ family, GTPase domain CFLA_RS08060 SM00865 Tubulin/FtsZ family, C-terminal domain CFLA_RS08095 SM00363 S4 RNA-binding domain CFLA_RS08100 SM00481 DNA polymerase alpha chain like domain CFLA_RS08105 SM00363 S4 RNA-binding domain CFLA_RS08110 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS08130 SM00487 DEAD-like helicases superfamily CFLA_RS08130 SM00490 helicase superfamily c-terminal domain CFLA_RS08185 SM01060 CFLA_RS08185 CFLA_RS08210 SM00967 RNA 2'-O ribose methyltransferase substrate binding CFLA_RS08225 SM00873 B3/4 domain CFLA_RS08225 SM00874 tRNA synthetase B5 domain CFLA_RS08225 SM00896 Ferredoxin-fold anticodon binding domain CFLA_RS08275 SM00829 Enoylreductase CFLA_RS08280 SM00859 Semialdehyde dehydrogenase, NAD binding domain CFLA_RS08375 SM00363 S4 RNA-binding domain CFLA_RS08430 SM00382 ATPases associated with a variety of cellular activities CFLA_RS08460 SM00382 ATPases associated with a variety of cellular activities CFLA_RS08490 SM00382 ATPases associated with a variety of cellular activities CFLA_RS08500 SM00382 ATPases associated with a variety of cellular activities CFLA_RS08520 SM00822 CFLA_RS08520 CFLA_RS08530 SM00855 Phosphoglycerate mutase family CFLA_RS08555 SM00434 DNA Topoisomerase IV CFLA_RS08560 SM00881 CoA binding domain CFLA_RS08680 SM00116 Domain in cystathionine beta-synthase and other proteins. CFLA_RS08680 SM01240 CFLA_RS08680 CFLA_RS08690 SM00861 Transketolase, pyrimidine binding domain CFLA_RS08720 SM00341 Helicase and RNase D C-terminal CFLA_RS08720 SM00474 3'-5' exonuclease CFLA_RS08725 SM00421 helix_turn_helix, Lux Regulon CFLA_RS08735 SM01350 CFLA_RS08735 CFLA_RS08790 SM00642 Alpha-amylase domain CFLA_RS08795 SM00642 Alpha-amylase domain CFLA_RS08800 SM00642 Alpha-amylase domain CFLA_RS08805 SM00460 Transglutaminase/protease-like homologues CFLA_RS08830 SM00382 ATPases associated with a variety of cellular activities CFLA_RS08860 SM00729 Elongator protein 3, MiaB family, Radical SAM CFLA_RS08865 SM00852 Probable molybdopterin binding domain CFLA_RS08875 SM00852 Probable molybdopterin binding domain CFLA_RS08900 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CFLA_RS08915 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS08935 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CFLA_RS08960 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS09020 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CFLA_RS09080 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFLA_RS09085 SM00382 ATPases associated with a variety of cellular activities CFLA_RS09090 SM01323 CFLA_RS09090 CFLA_RS09110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFLA_RS09110 SM00954 Region found in RelA / SpoT proteins CFLA_RS09130 SM00849 Metallo-beta-lactamase superfamily CFLA_RS09145 SM00729 Elongator protein 3, MiaB family, Radical SAM CFLA_RS09175 SM00382 ATPases associated with a variety of cellular activities CFLA_RS09180 SM00363 S4 RNA-binding domain CFLA_RS09180 SM01390 CFLA_RS09180 CFLA_RS09200 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CFLA_RS09205 SM00732 Likely ribonuclease with RNase H fold. CFLA_RS09220 SM00382 ATPases associated with a variety of cellular activities CFLA_RS09225 SM00382 ATPases associated with a variety of cellular activities CFLA_RS09260 SM00842 Cell division protein FtsA CFLA_RS09280 SM00382 ATPases associated with a variety of cellular activities CFLA_RS09305 SM00841 Elongation factor P, C-terminal CFLA_RS09305 SM01185 CFLA_RS09305 CFLA_RS09315 SM00052 Putative diguanylate phosphodiesterase CFLA_RS09315 SM00267 diguanylate cyclase CFLA_RS09340 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CFLA_RS09345 SM00851 MGS-like domain CFLA_RS09345 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CFLA_RS09350 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CFLA_RS09365 SM00072 Guanylate kinase homologues. CFLA_RS09370 SM01409 CFLA_RS09370 CFLA_RS09470 SM00046 Diacylglycerol kinase catalytic domain (presumed) CFLA_RS09475 SM00487 DEAD-like helicases superfamily CFLA_RS09475 SM00490 helicase superfamily c-terminal domain CFLA_RS09475 SM01142 CFLA_RS09475 CFLA_RS09520 SM00849 Metallo-beta-lactamase superfamily CFLA_RS09530 SM00422 helix_turn_helix, mercury resistance CFLA_RS09540 SM00422 helix_turn_helix, mercury resistance CFLA_RS09545 SM00240 Forkhead associated domain CFLA_RS09570 SM00881 CoA binding domain CFLA_RS09575 SM00487 DEAD-like helicases superfamily CFLA_RS09575 SM00490 helicase superfamily c-terminal domain CFLA_RS09580 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CFLA_RS09580 SM00091 PAS domain CFLA_RS09580 SM00267 diguanylate cyclase CFLA_RS09585 SM00354 helix_turn _helix lactose operon repressor CFLA_RS09590 SM00637 CFLA_RS09590 CFLA_RS09595 SM00637 CFLA_RS09595 CFLA_RS09610 SM00411 bacterial (prokaryotic) histone like domain CFLA_RS09615 SM00481 DNA polymerase alpha chain like domain CFLA_RS09620 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CFLA_RS09685 SM00450 Rhodanese Homology Domain CFLA_RS09745 SM00382 ATPases associated with a variety of cellular activities CFLA_RS09750 SM00563 Phosphate acyltransferases CFLA_RS09765 SM00363 S4 RNA-binding domain CFLA_RS09795 SM00861 Transketolase, pyrimidine binding domain CFLA_RS09840 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFLA_RS09860 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFLA_RS09860 SM00465 GIY-YIG type nucleases (URI domain) CFLA_RS09880 SM00849 Metallo-beta-lactamase superfamily CFLA_RS09905 SM00487 DEAD-like helicases superfamily CFLA_RS09905 SM00490 helicase superfamily c-terminal domain CFLA_RS09920 SM00316 Ribosomal protein S1-like RNA-binding domain CFLA_RS09930 SM00382 ATPases associated with a variety of cellular activities CFLA_RS09965 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CFLA_RS09965 SM00474 3'-5' exonuclease CFLA_RS09965 SM00475 5'-3' exonuclease CFLA_RS09965 SM00482 DNA polymerase A domain CFLA_RS09990 SM00382 ATPases associated with a variety of cellular activities CFLA_RS09995 SM00382 ATPases associated with a variety of cellular activities CFLA_RS10005 SM00448 cheY-homologous receiver domain CFLA_RS10005 SM01012 CFLA_RS10005 CFLA_RS10095 SM00382 ATPases associated with a variety of cellular activities CFLA_RS10100 SM00382 ATPases associated with a variety of cellular activities CFLA_RS10145 SM00382 ATPases associated with a variety of cellular activities CFLA_RS10210 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CFLA_RS10210 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CFLA_RS10215 SM00344 helix_turn_helix ASNC type CFLA_RS10320 SM00481 DNA polymerase alpha chain like domain CFLA_RS10335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS10370 SM00633 Glycosyl hydrolase family 10 CFLA_RS10375 SM00382 ATPases associated with a variety of cellular activities CFLA_RS10380 SM00382 ATPases associated with a variety of cellular activities CFLA_RS10385 SM00244 prohibitin homologues CFLA_RS10395 SM00382 ATPases associated with a variety of cellular activities CFLA_RS10405 SM00387 Histidine kinase-like ATPases CFLA_RS10405 SM00433 TopoisomeraseII CFLA_RS10445 SM00257 Lysin motif CFLA_RS10450 SM00220 Serine/Threonine protein kinases, catalytic domain CFLA_RS10450 SM00740 CFLA_RS10450 CFLA_RS10465 SM00563 Phosphate acyltransferases CFLA_RS10485 SM00465 GIY-YIG type nucleases (URI domain) CFLA_RS10485 SM00479 CFLA_RS10485 CFLA_RS10500 SM00448 cheY-homologous receiver domain CFLA_RS10600 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS10665 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS10665 SM00419 helix_turn_helix, cAMP Regulatory protein CFLA_RS10680 SM00729 Elongator protein 3, MiaB family, Radical SAM CFLA_RS10695 SM01230 CFLA_RS10695 CFLA_RS10730 SM01230 CFLA_RS10730 CFLA_RS10795 SM00448 cheY-homologous receiver domain CFLA_RS10795 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS10800 SM00387 Histidine kinase-like ATPases CFLA_RS10800 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS10830 SM00855 Phosphoglycerate mutase family CFLA_RS10880 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CFLA_RS10895 SM00825 Beta-ketoacyl synthase CFLA_RS10940 SM00014 Acid phosphatase homologues CFLA_RS10945 SM00014 Acid phosphatase homologues CFLA_RS10985 SM00460 Transglutaminase/protease-like homologues CFLA_RS10990 SM00400 zinc finger CFLA_RS10990 SM00493 CFLA_RS10990 CFLA_RS10990 SM00766 DNA primase DnaG DnaB-binding CFLA_RS11000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFLA_RS11020 SM00354 helix_turn _helix lactose operon repressor CFLA_RS11025 SM00642 Alpha-amylase domain CFLA_RS11060 SM00382 ATPases associated with a variety of cellular activities CFLA_RS11090 SM00917 LeuA allosteric (dimerisation) domain CFLA_RS11115 SM00460 Transglutaminase/protease-like homologues CFLA_RS11130 SM00060 Fibronectin type 3 domain CFLA_RS11135 SM00220 Serine/Threonine protein kinases, catalytic domain CFLA_RS11145 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS11145 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CFLA_RS11160 SM00116 Domain in cystathionine beta-synthase and other proteins. CFLA_RS11160 SM01091 Transporter associated domain CFLA_RS11185 SM00271 DnaJ molecular chaperone homology domain CFLA_RS11215 SM00729 Elongator protein 3, MiaB family, Radical SAM CFLA_RS11220 SM00838 Elongation factor G C-terminus CFLA_RS11235 SM00460 Transglutaminase/protease-like homologues CFLA_RS11265 SM00052 Putative diguanylate phosphodiesterase CFLA_RS11270 SM00052 Putative diguanylate phosphodiesterase CFLA_RS11315 SM00419 helix_turn_helix, cAMP Regulatory protein CFLA_RS11315 SM00529 Helix-turn-helix diphteria tox regulatory element CFLA_RS11315 SM00899 CFLA_RS11315 CFLA_RS11345 SM01118 CFLA_RS11345 CFLA_RS11350 SM00487 DEAD-like helicases superfamily CFLA_RS11350 SM00490 helicase superfamily c-terminal domain CFLA_RS11370 SM00382 ATPases associated with a variety of cellular activities CFLA_RS11385 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS11410 SM00421 helix_turn_helix, Lux Regulon CFLA_RS11425 SM00382 ATPases associated with a variety of cellular activities CFLA_RS11490 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS11490 SM01043 Bacterial transcriptional activator domain CFLA_RS11500 SM00855 Phosphoglycerate mutase family CFLA_RS11530 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CFLA_RS11550 SM00316 Ribosomal protein S1-like RNA-binding domain CFLA_RS11565 SM00382 ATPases associated with a variety of cellular activities CFLA_RS11570 SM00382 ATPases associated with a variety of cellular activities CFLA_RS11575 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CFLA_RS11580 SM00421 helix_turn_helix, Lux Regulon CFLA_RS11580 SM00448 cheY-homologous receiver domain CFLA_RS11590 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CFLA_RS11590 SM01232 CFLA_RS11590 CFLA_RS11595 SM00358 Double-stranded RNA binding motif CFLA_RS11595 SM00535 Ribonuclease III family CFLA_RS11645 SM00382 ATPases associated with a variety of cellular activities CFLA_RS11650 SM00487 DEAD-like helicases superfamily CFLA_RS11650 SM00490 helicase superfamily c-terminal domain CFLA_RS11695 SM00563 Phosphate acyltransferases CFLA_RS11715 SM00346 helix_turn_helix isocitrate lyase regulation CFLA_RS11765 SM00957 SecA DEAD-like domain CFLA_RS11765 SM00958 SecA preprotein cross-linking domain CFLA_RS11775 SM00633 Glycosyl hydrolase family 10 CFLA_RS11790 SM00909 Sporulation and spore germination CFLA_RS11795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS11795 SM00387 Histidine kinase-like ATPases CFLA_RS11795 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS11800 SM00448 cheY-homologous receiver domain CFLA_RS11800 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS11820 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12000 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12025 SM00014 Acid phosphatase homologues CFLA_RS12065 SM01001 AIR carboxylase CFLA_RS12080 SM00387 Histidine kinase-like ATPases CFLA_RS12080 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS12085 SM00448 cheY-homologous receiver domain CFLA_RS12085 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS12090 SM00387 Histidine kinase-like ATPases CFLA_RS12095 SM00421 helix_turn_helix, Lux Regulon CFLA_RS12095 SM00448 cheY-homologous receiver domain CFLA_RS12100 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12110 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12125 SM00387 Histidine kinase-like ATPases CFLA_RS12125 SM00911 HWE histidine kinase CFLA_RS12150 SM00354 helix_turn _helix lactose operon repressor CFLA_RS12160 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFLA_RS12180 SM00220 Serine/Threonine protein kinases, catalytic domain CFLA_RS12190 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS12235 SM00478 endonuclease III CFLA_RS12235 SM01009 AlkA N-terminal domain CFLA_RS12250 SM00831 Cation transporter/ATPase, N-terminus CFLA_RS12265 SM00342 helix_turn_helix, arabinose operon control protein CFLA_RS12290 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12320 SM00342 helix_turn_helix, arabinose operon control protein CFLA_RS12410 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12470 SM00341 Helicase and RNase D C-terminal CFLA_RS12515 SM00487 DEAD-like helicases superfamily CFLA_RS12515 SM00490 helicase superfamily c-terminal domain CFLA_RS12525 SM00481 DNA polymerase alpha chain like domain CFLA_RS12530 SM01011 Aminopeptidase P, N-terminal domain CFLA_RS12540 SM00924 MgtE intracellular N domain CFLA_RS12560 SM00633 Glycosyl hydrolase family 10 CFLA_RS12565 SM00633 Glycosyl hydrolase family 10 CFLA_RS12570 SM00420 helix_turn_helix, Deoxyribose operon repressor CFLA_RS12570 SM01134 CFLA_RS12570 CFLA_RS12590 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12610 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12660 SM00421 helix_turn_helix, Lux Regulon CFLA_RS12675 SM00637 CFLA_RS12675 CFLA_RS12685 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12700 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12710 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12725 SM00382 ATPases associated with a variety of cellular activities CFLA_RS12735 SM00642 Alpha-amylase domain CFLA_RS12770 SM01329 CFLA_RS12770 CFLA_RS12790 SM00798 AICARFT/IMPCHase bienzyme CFLA_RS12790 SM00851 MGS-like domain CFLA_RS12810 SM00881 CoA binding domain CFLA_RS12845 SM00421 helix_turn_helix, Lux Regulon CFLA_RS12845 SM00448 cheY-homologous receiver domain CFLA_RS12945 SM00421 helix_turn_helix, Lux Regulon CFLA_RS12945 SM00448 cheY-homologous receiver domain CFLA_RS13000 SM00382 ATPases associated with a variety of cellular activities CFLA_RS13045 SM00382 ATPases associated with a variety of cellular activities CFLA_RS13050 SM01240 CFLA_RS13050 CFLA_RS13055 SM00116 Domain in cystathionine beta-synthase and other proteins. CFLA_RS13055 SM01240 CFLA_RS13055 CFLA_RS13060 SM00421 helix_turn_helix, Lux Regulon CFLA_RS13065 SM00422 helix_turn_helix, mercury resistance CFLA_RS13075 SM00883 Chaperonin 10 Kd subunit CFLA_RS13110 SM00450 Rhodanese Homology Domain CFLA_RS13130 SM01005 Alanine racemase, C-terminal domain CFLA_RS13200 SM00382 ATPases associated with a variety of cellular activities CFLA_RS13220 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS13260 SM00662 RNA polymerases D CFLA_RS13370 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CFLA_RS13375 SM01374 CFLA_RS13375 CFLA_RS13395 SM00322 K homology RNA-binding domain CFLA_RS13410 SM01382 CFLA_RS13410 CFLA_RS13410 SM01383 CFLA_RS13410 CFLA_RS13430 SM01403 CFLA_RS13430 CFLA_RS13440 SM00838 Elongation factor G C-terminus CFLA_RS13440 SM00889 Elongation factor G, domain IV CFLA_RS13460 SM00663 RNA polymerase I subunit A N-terminus CFLA_RS13510 SM00649 Ribosomal protein L11/L12 CFLA_RS13515 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CFLA_RS13535 SM00382 ATPases associated with a variety of cellular activities CFLA_RS13550 SM00421 helix_turn_helix, Lux Regulon CFLA_RS13550 SM00448 cheY-homologous receiver domain CFLA_RS13555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS13555 SM00387 Histidine kinase-like ATPases CFLA_RS13555 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS13560 SM00448 cheY-homologous receiver domain CFLA_RS13560 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS13595 SM00354 helix_turn _helix lactose operon repressor CFLA_RS13660 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS13660 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CFLA_RS13705 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CFLA_RS13710 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CFLA_RS13760 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFLA_RS13770 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CFLA_RS13830 SM00855 Phosphoglycerate mutase family CFLA_RS13835 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS13840 SM00867 YceI-like domain CFLA_RS13845 SM00881 CoA binding domain CFLA_RS13905 SM00060 Fibronectin type 3 domain CFLA_RS13915 SM01007 Class II Aldolase and Adducin N-terminal domain CFLA_RS14000 SM00796 Allophanate hydrolase subunit 1 CFLA_RS14000 SM00797 Allophanate hydrolase subunit 2 CFLA_RS14010 SM00487 DEAD-like helicases superfamily CFLA_RS14010 SM00490 helicase superfamily c-terminal domain CFLA_RS14105 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFLA_RS14140 SM00382 ATPases associated with a variety of cellular activities CFLA_RS14175 SM00919 Malic enzyme, NAD binding domain CFLA_RS14175 SM01274 CFLA_RS14175 CFLA_RS14210 SM00637 CFLA_RS14210 CFLA_RS14235 SM00855 Phosphoglycerate mutase family CFLA_RS14265 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS14280 SM00052 Putative diguanylate phosphodiesterase CFLA_RS14280 SM00267 diguanylate cyclase CFLA_RS14335 SM00829 Enoylreductase CFLA_RS14365 SM00421 helix_turn_helix, Lux Regulon CFLA_RS14365 SM00448 cheY-homologous receiver domain CFLA_RS14385 SM00382 ATPases associated with a variety of cellular activities CFLA_RS14395 SM00458 Ricin-type beta-trefoil CFLA_RS14510 SM00710 Parallel beta-helix repeats CFLA_RS14580 SM00867 YceI-like domain CFLA_RS14585 SM00421 helix_turn_helix, Lux Regulon CFLA_RS14630 SM00710 Parallel beta-helix repeats CFLA_RS14725 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFLA_RS14730 SM00637 CFLA_RS14730 CFLA_RS14735 SM00637 CFLA_RS14735 CFLA_RS14745 SM00955 CFLA_RS14745 CFLA_RS14765 SM00903 Flavin reductase like domain CFLA_RS14785 SM01060 CFLA_RS14785 CFLA_RS14830 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CFLA_RS14835 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CFLA_RS14855 SM00822 CFLA_RS14855 CFLA_RS14895 SM00450 Rhodanese Homology Domain CFLA_RS14935 SM01211 CFLA_RS14935 CFLA_RS14950 SM00477 DNA/RNA non-specific endonuclease CFLA_RS14950 SM00892 DNA/RNA non-specific endonuclease CFLA_RS14960 SM00382 ATPases associated with a variety of cellular activities CFLA_RS14965 SM01209 CFLA_RS14965 CFLA_RS14965 SM01210 CFLA_RS14965 CFLA_RS14970 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS14980 SM00788 Adenylosuccinate synthetase CFLA_RS14995 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS15030 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15065 SM00822 CFLA_RS15065 CFLA_RS15070 SM00341 Helicase and RNase D C-terminal CFLA_RS15070 SM00487 DEAD-like helicases superfamily CFLA_RS15070 SM00490 helicase superfamily c-terminal domain CFLA_RS15070 SM00956 CFLA_RS15070 CFLA_RS15075 SM00354 helix_turn _helix lactose operon repressor CFLA_RS15080 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CFLA_RS15170 SM00354 helix_turn _helix lactose operon repressor CFLA_RS15195 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS15195 SM00895 CFLA_RS15195 CFLA_RS15210 SM00354 helix_turn _helix lactose operon repressor CFLA_RS15230 SM00354 helix_turn _helix lactose operon repressor CFLA_RS15245 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15260 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS15280 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15285 SM00633 Glycosyl hydrolase family 10 CFLA_RS15285 SM00637 CFLA_RS15285 CFLA_RS15290 SM00354 helix_turn _helix lactose operon repressor CFLA_RS15300 SM01217 CFLA_RS15300 CFLA_RS15310 SM00482 DNA polymerase A domain CFLA_RS15315 SM00354 helix_turn _helix lactose operon repressor CFLA_RS15325 SM01266 CFLA_RS15325 CFLA_RS15365 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15375 SM00354 helix_turn _helix lactose operon repressor CFLA_RS15380 SM00637 CFLA_RS15380 CFLA_RS15410 SM01217 CFLA_RS15410 CFLA_RS15435 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15435 SM01086 C-terminal, D2-small domain, of ClpB protein CFLA_RS15445 SM00966 SpoVT / AbrB like domain CFLA_RS15460 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15470 SM00062 Bacterial periplasmic substrate-binding proteins CFLA_RS15485 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS15485 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CFLA_RS15490 SM00327 von Willebrand factor (vWF) type A domain CFLA_RS15495 SM00240 Forkhead associated domain CFLA_RS15550 SM00327 von Willebrand factor (vWF) type A domain CFLA_RS15610 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS15625 SM00478 endonuclease III CFLA_RS15625 SM00525 CFLA_RS15625 CFLA_RS15635 SM00100 Cyclic nucleotide-monophosphate binding domain CFLA_RS15635 SM00419 helix_turn_helix, cAMP Regulatory protein CFLA_RS15650 SM00740 CFLA_RS15650 CFLA_RS15670 SM00421 helix_turn_helix, Lux Regulon CFLA_RS15670 SM00448 cheY-homologous receiver domain CFLA_RS15680 SM00637 CFLA_RS15680 CFLA_RS15690 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15705 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15710 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS15715 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS15720 SM00822 CFLA_RS15720 CFLA_RS15725 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS15740 SM01110 CFLA_RS15740 CFLA_RS15745 SM00859 Semialdehyde dehydrogenase, NAD binding domain CFLA_RS15755 SM00637 CFLA_RS15755 CFLA_RS15760 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15775 SM00493 CFLA_RS15775 CFLA_RS15780 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15790 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15805 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15865 SM00357 Cold shock protein domain CFLA_RS15885 SM00563 Phosphate acyltransferases CFLA_RS15945 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CFLA_RS15945 SM01232 CFLA_RS15945 CFLA_RS15955 SM00382 ATPases associated with a variety of cellular activities CFLA_RS15990 SM00354 helix_turn _helix lactose operon repressor CFLA_RS16005 SM00637 CFLA_RS16005 CFLA_RS16010 SM00640 Glycosyl hydrolases family 32 CFLA_RS16030 SM00960 Roadblock/LC7 domain CFLA_RS16035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS16035 SM00387 Histidine kinase-like ATPases CFLA_RS16040 SM00829 Enoylreductase CFLA_RS16085 SM00046 Diacylglycerol kinase catalytic domain (presumed) CFLA_RS16115 SM00984 UDP binding domain CFLA_RS16175 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS16190 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CFLA_RS16190 SM00475 5'-3' exonuclease CFLA_RS16235 SM00421 helix_turn_helix, Lux Regulon CFLA_RS16260 SM00421 helix_turn_helix, Lux Regulon CFLA_RS16260 SM00448 cheY-homologous receiver domain CFLA_RS16265 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS16265 SM00895 CFLA_RS16265 CFLA_RS16275 SM00642 Alpha-amylase domain CFLA_RS16285 SM00838 Elongation factor G C-terminus CFLA_RS16285 SM00889 Elongation factor G, domain IV CFLA_RS16300 SM00382 ATPases associated with a variety of cellular activities CFLA_RS16310 SM00986 Uracil DNA glycosylase superfamily CFLA_RS16310 SM00987 UreE urease accessory protein, C-terminal domain CFLA_RS16330 SM00822 CFLA_RS16330 CFLA_RS16335 SM00116 Domain in cystathionine beta-synthase and other proteins. CFLA_RS16365 SM00409 Immunoglobulin CFLA_RS16435 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS16455 SM00752 Horizontally Transferred TransMembrane Domain CFLA_RS16530 SM00487 DEAD-like helicases superfamily CFLA_RS16610 SM00487 DEAD-like helicases superfamily CFLA_RS16610 SM00490 helicase superfamily c-terminal domain CFLA_RS16615 SM00487 DEAD-like helicases superfamily CFLA_RS16615 SM00490 helicase superfamily c-terminal domain CFLA_RS16625 SM00382 ATPases associated with a variety of cellular activities CFLA_RS16660 SM00849 Metallo-beta-lactamase superfamily CFLA_RS16705 SM00487 DEAD-like helicases superfamily CFLA_RS16705 SM00490 helicase superfamily c-terminal domain CFLA_RS16770 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CFLA_RS16790 SM00822 CFLA_RS16790 CFLA_RS16810 SM00825 Beta-ketoacyl synthase CFLA_RS16815 SM00825 Beta-ketoacyl synthase CFLA_RS16825 SM00421 helix_turn_helix, Lux Regulon CFLA_RS16825 SM00448 cheY-homologous receiver domain CFLA_RS16840 SM00448 cheY-homologous receiver domain CFLA_RS16840 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS16845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS16845 SM00387 Histidine kinase-like ATPases CFLA_RS16845 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS16865 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS16905 SM00966 SpoVT / AbrB like domain CFLA_RS16935 SM00642 Alpha-amylase domain CFLA_RS16960 SM00354 helix_turn _helix lactose operon repressor CFLA_RS17005 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS17035 SM00861 Transketolase, pyrimidine binding domain CFLA_RS17055 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS17080 SM00382 ATPases associated with a variety of cellular activities CFLA_RS17100 SM00028 Tetratricopeptide repeats CFLA_RS17100 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS17100 SM01043 Bacterial transcriptional activator domain CFLA_RS17120 SM00861 Transketolase, pyrimidine binding domain CFLA_RS17125 SM00354 helix_turn _helix lactose operon repressor CFLA_RS17130 SM00640 Glycosyl hydrolases family 32 CFLA_RS17135 SM00382 ATPases associated with a variety of cellular activities CFLA_RS17155 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS17210 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS17220 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS17265 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CFLA_RS17320 SM01004 Delta-aminolevulinic acid dehydratase CFLA_RS17355 SM00244 prohibitin homologues CFLA_RS17370 SM00382 ATPases associated with a variety of cellular activities CFLA_RS17405 SM00563 Phosphate acyltransferases CFLA_RS17410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CFLA_RS17410 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS17465 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFLA_RS17475 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS17500 SM00642 Alpha-amylase domain CFLA_RS17510 SM00530 Helix-turn-helix XRE-family like proteins CFLA_RS17520 SM00829 Enoylreductase CFLA_RS17530 SM00382 ATPases associated with a variety of cellular activities CFLA_RS17580 SM00871 Bacterial transcription activator, effector binding domain CFLA_RS17655 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS17730 SM00867 YceI-like domain CFLA_RS17760 SM00813 Alpha-L-arabinofuranosidase C-terminus CFLA_RS17765 SM00354 helix_turn _helix lactose operon repressor CFLA_RS17775 SM00633 Glycosyl hydrolase family 10 CFLA_RS17775 SM00637 CFLA_RS17775 CFLA_RS17795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFLA_RS17795 SM00387 Histidine kinase-like ATPases CFLA_RS17795 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS17800 SM00448 cheY-homologous receiver domain CFLA_RS17800 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS17825 SM00422 helix_turn_helix, mercury resistance CFLA_RS17850 SM00633 Glycosyl hydrolase family 10 CFLA_RS17860 SM00382 ATPases associated with a variety of cellular activities CFLA_RS17870 SM00448 cheY-homologous receiver domain CFLA_RS17870 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS17875 SM00387 Histidine kinase-like ATPases CFLA_RS17875 SM00388 His Kinase A (phosphoacceptor) domain CFLA_RS17930 SM00637 CFLA_RS17930 CFLA_RS17935 SM00347 helix_turn_helix multiple antibiotic resistance protein CFLA_RS18050 SM00382 ATPases associated with a variety of cellular activities CFLA_RS18070 SM00382 ATPases associated with a variety of cellular activities CFLA_RS18075 SM00382 ATPases associated with a variety of cellular activities CFLA_RS18085 SM00421 helix_turn_helix, Lux Regulon CFLA_RS18205 SM00860 SMI1 / KNR4 family CFLA_RS18265 SM00903 Flavin reductase like domain CFLA_RS18275 SM00342 helix_turn_helix, arabinose operon control protein CFLA_RS18355 SM00226 Low molecular weight phosphatase family CFLA_RS18375 SM00226 Low molecular weight phosphatase family CFLA_RS18375 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS18380 SM00226 Low molecular weight phosphatase family CFLA_RS18395 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS18400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFLA_RS18420 SM00422 helix_turn_helix, mercury resistance CFLA_RS18480 SM00448 cheY-homologous receiver domain CFLA_RS18480 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS18495 SM00893 Electron transfer flavoprotein domain CFLA_RS18500 SM00893 Electron transfer flavoprotein domain CFLA_RS18540 SM00305 Hint (Hedgehog/Intein) domain C-terminal region CFLA_RS18540 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CFLA_RS18605 SM00740 CFLA_RS18605 CFLA_RS18645 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CFLA_RS18645 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CFLA_RS18645 SM00091 PAS domain CFLA_RS18645 SM00331 Sigma factor PP2C-like phosphatases CFLA_RS18660 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFLA_RS18695 SM00470 ParB-like nuclease domain CFLA_RS18715 SM00393 Putative single-stranded nucleic acids-binding domain CFLA_RS18725 SM01234 CFLA_RS18725 CFLA_RS18760 SM00220 Serine/Threonine protein kinases, catalytic domain CFLA_RS18795 SM00637 CFLA_RS18795 CFLA_RS18840 SM00633 Glycosyl hydrolase family 10 CFLA_RS18915 SM00637 CFLA_RS18915 CFLA_RS18920 SM00560 LamG-like jellyroll fold domain CFLA_RS18945 SM00020 Trypsin-like serine protease CFLA_RS18950 SM00020 Trypsin-like serine protease CFLA_RS18955 SM00020 Trypsin-like serine protease CFLA_RS18965 SM00052 Putative diguanylate phosphodiesterase CFLA_RS18965 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CFLA_RS18965 SM00091 PAS domain CFLA_RS18965 SM00267 diguanylate cyclase CFLA_RS18970 SM00637 CFLA_RS18970 CFLA_RS18985 SM00257 Lysin motif CFLA_RS19025 SM00633 Glycosyl hydrolase family 10 CFLA_RS19025 SM00637 CFLA_RS19025 CFLA_RS19045 SM00108 Bulb-type mannose-specific lectin CFLA_RS19050 SM00240 Forkhead associated domain CFLA_RS19055 SM00108 Bulb-type mannose-specific lectin CFLA_RS19060 SM01120 CFLA_RS19060 CFLA_RS19060 SM01121 CFLA_RS19060 CFLA_RS19085 SM00644 CFLA_RS19085 CFLA_RS19085 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. CFLA_RS19110 SM00387 Histidine kinase-like ATPases CFLA_RS19125 SM00387 Histidine kinase-like ATPases CFLA_RS19155 SM00862 Transcriptional regulatory protein, C terminal CFLA_RS19155 SM01043 Bacterial transcriptional activator domain CFLA_RS19210 SM00637 CFLA_RS19210 CFLA_RS19245 SM00421 helix_turn_helix, Lux Regulon CFLA_RS19270 SM00382 ATPases associated with a variety of cellular activities CFLA_RS19270 SM01086 C-terminal, D2-small domain, of ClpB protein CFLA_RS19275 SM00633 Glycosyl hydrolase family 10 CFLA_RS19275 SM00637 CFLA_RS19275 CFLA_RS19280 SM00327 von Willebrand factor (vWF) type A domain