locus-tag class description CP_RS00005 PF00490 Delta-aminolevulinic acid dehydratase CP_RS00010 PF11973 NQRA C-terminal domain CP_RS00010 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CP_RS00020 PF01272 Transcription elongation factor, GreA/GreB, C-term CP_RS00020 PF03449 Transcription elongation factor, N-terminal CP_RS00030 PF00155 Aminotransferase class I and II CP_RS00040 PF00580 UvrD/REP helicase N-terminal domain CP_RS00040 PF13361 UvrD-like helicase C-terminal domain CP_RS00050 PF07690 Major Facilitator Superfamily CP_RS00055 PF00485 Phosphoribulokinase / Uridine kinase family CP_RS00060 PF17773 UPF0176 acylphosphatase like domain CP_RS00060 PF00581 Rhodanese-like domain CP_RS00060 PF12368 Rhodanase C-terminal CP_RS00065 PF00163 Ribosomal protein S4/S9 N-terminal domain CP_RS00065 PF01479 S4 domain CP_RS00070 PF01261 Xylose isomerase-like TIM barrel CP_RS00080 PF03023 Lipid II flippase MurJ CP_RS00115 PF00005 ABC transporter CP_RS00125 PF00793 DAHP synthetase I family CP_RS00140 PF01479 S4 domain CP_RS00140 PF00849 RNA pseudouridylate synthase CP_RS00155 PF00521 DNA gyrase/topoisomerase IV, subunit A CP_RS00160 PF00986 DNA gyrase B subunit, carboxyl terminus CP_RS00160 PF01751 Toprim domain CP_RS00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP_RS00160 PF00204 DNA gyrase B CP_RS00165 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CP_RS00170 PF05932 Tir chaperone protein (CesT) family CP_RS00180 PF17376 Family of unknown function (DUF5398) CP_RS00185 PF17401 Family of unknown function (DUF5407) CP_RS00200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP_RS00200 PF02874 ATP synthase alpha/beta family, beta-barrel domain CP_RS00200 PF18269 T3SS EscN ATPase C-terminal domain CP_RS00210 PF17458 Family of unknown function (DUF5421) CP_RS00215 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CP_RS00220 PF03793 PASTA domain CP_RS00220 PF00069 Protein kinase domain CP_RS00225 PF00263 Bacterial type II and III secretion system protein CP_RS00225 PF03958 Bacterial type II/III secretion system short domain CP_RS00235 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CP_RS00240 PF02151 UvrB/uvrC motif CP_RS00255 PF01765 Ribosome recycling factor CP_RS00260 PF00696 Amino acid kinase family CP_RS00265 PF00889 Elongation factor TS CP_RS00270 PF00318 Ribosomal protein S2 CP_RS00280 PF01308 Chlamydia major outer membrane protein CP_RS00285 PF00905 Penicillin binding protein transpeptidase domain CP_RS00295 PF01458 Uncharacterized protein family (UPF0051) CP_RS00300 PF00005 ABC transporter CP_RS00305 PF01458 Uncharacterized protein family (UPF0051) CP_RS00310 PF00266 Aminotransferase class-V CP_RS00340 PF02195 ParB-like nuclease domain CP_RS00340 PF17762 HTH domain found in ParB protein CP_RS00350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP_RS00350 PF00005 ABC transporter CP_RS00355 PF00005 ABC transporter CP_RS00355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP_RS00360 PF01865 Protein of unknown function DUF47 CP_RS00365 PF01384 Phosphate transporter family CP_RS00370 PF00162 Phosphoglycerate kinase CP_RS00395 PF01189 16S rRNA methyltransferase RsmB/F CP_RS00395 PF01029 NusB family CP_RS00415 PF13581 Histidine kinase-like ATPase domain CP_RS00435 PF07733 Bacterial DNA polymerase III alpha NTPase domain CP_RS00435 PF02811 PHP domain CP_RS00435 PF14579 Helix-hairpin-helix motif CP_RS00435 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CP_RS00440 PF07690 Major Facilitator Superfamily CP_RS00450 PF13393 Histidyl-tRNA synthetase CP_RS00450 PF03129 Anticodon binding domain CP_RS00455 PF02938 GAD domain CP_RS00455 PF00152 tRNA synthetases class II (D, K and N) CP_RS00455 PF01336 OB-fold nucleic acid binding domain CP_RS00460 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CP_RS00460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CP_RS00465 PF00588 SpoU rRNA Methylase family CP_RS00470 PF00085 Thioredoxin CP_RS00480 PF10915 Protein of unknown function (DUF2709) CP_RS00485 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CP_RS00495 PF00929 Exonuclease CP_RS00500 PF03061 Thioesterase superfamily CP_RS00505 PF00795 Carbon-nitrogen hydrolase CP_RS00510 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CP_RS00515 PF07977 FabA-like domain CP_RS00520 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CP_RS00520 PF00132 Bacterial transferase hexapeptide (six repeats) CP_RS00525 PF00551 Formyl transferase CP_RS00525 PF02911 Formyl transferase, C-terminal domain CP_RS00535 PF00297 Ribosomal protein L3 CP_RS00540 PF00573 Ribosomal protein L4/L1 family CP_RS00545 PF00276 Ribosomal protein L23 CP_RS00550 PF00181 Ribosomal Proteins L2, RNA binding domain CP_RS00550 PF03947 Ribosomal Proteins L2, C-terminal domain CP_RS00555 PF00203 Ribosomal protein S19 CP_RS00560 PF00237 Ribosomal protein L22p/L17e CP_RS00565 PF00189 Ribosomal protein S3, C-terminal domain CP_RS00565 PF07650 KH domain CP_RS00570 PF00252 Ribosomal protein L16p/L10e CP_RS00575 PF00831 Ribosomal L29 protein CP_RS00580 PF00366 Ribosomal protein S17 CP_RS00585 PF00238 Ribosomal protein L14p/L23e CP_RS00590 PF00467 KOW motif CP_RS00590 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CP_RS00595 PF00673 ribosomal L5P family C-terminus CP_RS00595 PF00281 Ribosomal protein L5 CP_RS00600 PF00410 Ribosomal protein S8 CP_RS00605 PF00347 Ribosomal protein L6 CP_RS00610 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CP_RS00615 PF03719 Ribosomal protein S5, C-terminal domain CP_RS00615 PF00333 Ribosomal protein S5, N-terminal domain CP_RS00620 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CP_RS00625 PF00344 SecY translocase CP_RS00630 PF00416 Ribosomal protein S13/S18 CP_RS00635 PF00411 Ribosomal protein S11 CP_RS00640 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CP_RS00640 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CP_RS00640 PF01000 RNA polymerase Rpb3/RpoA insert domain CP_RS00645 PF01196 Ribosomal protein L17 CP_RS00650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CP_RS00650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CP_RS00670 PF02075 Crossover junction endodeoxyribonuclease RuvC CP_RS00675 PF01330 RuvA N terminal domain CP_RS00680 PF00334 Nucleoside diphosphate kinase CP_RS00685 PF10437 Bacterial lipoate protein ligase C-terminus CP_RS00685 PF03099 Biotin/lipoate A/B protein ligase family CP_RS00690 PF01134 Glucose inhibited division protein A CP_RS00690 PF13932 GidA associated domain CP_RS00700 PF00772 DnaB-like helicase N terminal domain CP_RS00700 PF03796 DnaB-like helicase C terminal domain CP_RS00710 PF01066 CDP-alcohol phosphatidyltransferase CP_RS00715 PF03219 TLC ATP/ADP transporter CP_RS00720 PF01343 Peptidase family S49 CP_RS00725 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CP_RS00725 PF00476 DNA polymerase family A CP_RS00725 PF01367 5'-3' exonuclease, C-terminal SAM fold CP_RS00730 PF01121 Dephospho-CoA kinase CP_RS00735 PF07497 Rho termination factor, RNA-binding domain CP_RS00735 PF07498 Rho termination factor, N-terminal domain CP_RS00735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP_RS00745 PF00156 Phosphoribosyl transferase domain CP_RS00750 PF00483 Nucleotidyl transferase CP_RS00770 PF00762 Ferrochelatase CP_RS00800 PF00528 Binding-protein-dependent transport system inner membrane component CP_RS00805 PF00528 Binding-protein-dependent transport system inner membrane component CP_RS00805 PF12911 N-terminal TM domain of oligopeptide transport permease C CP_RS00820 PF01588 Putative tRNA binding domain CP_RS00820 PF03147 Ferredoxin-fold anticodon binding domain CP_RS00820 PF03484 tRNA synthetase B5 domain CP_RS00820 PF03483 B3/4 domain CP_RS00820 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CP_RS00825 PF01476 LysM domain CP_RS00830 PF01809 Putative membrane protein insertion efficiency factor CP_RS00850 PF11967 Recombination protein O N terminal CP_RS00850 PF02565 Recombination protein O C terminal CP_RS00870 PF00158 Sigma-54 interaction domain CP_RS00870 PF00072 Response regulator receiver domain CP_RS00870 PF02954 Bacterial regulatory protein, Fis family CP_RS00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP_RS00880 PF00512 His Kinase A (phospho-acceptor) domain CP_RS00900 PF13419 Haloacid dehalogenase-like hydrolase CP_RS00905 PF01416 tRNA pseudouridine synthase CP_RS00910 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CP_RS00915 PF00149 Calcineurin-like phosphoesterase CP_RS00930 PF00583 Acetyltransferase (GNAT) family CP_RS00940 PF01709 Transcriptional regulator CP_RS00950 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CP_RS00955 PF03485 Arginyl tRNA synthetase N terminal domain CP_RS00955 PF05746 DALR anticodon binding domain CP_RS00955 PF00750 tRNA synthetases class I (R) CP_RS00965 PF02224 Cytidylate kinase CP_RS00975 PF01255 Putative undecaprenyl diphosphate synthase CP_RS00985 PF07549 SecD/SecF GG Motif CP_RS00985 PF02355 Protein export membrane protein CP_RS00990 PF17768 RecJ OB domain CP_RS00990 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CP_RS00990 PF01368 DHH family CP_RS00990 PF02272 DHHA1 domain CP_RS01000 PF12728 Helix-turn-helix domain CP_RS01005 PF00749 tRNA synthetases class I (E and Q), catalytic domain CP_RS01015 PF03503 Chlamydia cysteine-rich outer membrane protein 3 CP_RS01020 PF01345 Domain of unknown function DUF11 CP_RS01020 PF03504 Chlamydia cysteine-rich outer membrane protein 6 CP_RS01025 PF05745 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) CP_RS01030 PF03572 Peptidase family S41 CP_RS01030 PF17804 Tail specific protease N-terminal domain CP_RS01030 PF00595 PDZ domain CP_RS01030 PF11818 C-terminal domain of tail specific protease (DUF3340) CP_RS01045 PF00164 Ribosomal protein S12/S23 CP_RS01050 PF00177 Ribosomal protein S7p/S5e CP_RS01055 PF14492 Elongation Factor G, domain II CP_RS01055 PF00679 Elongation factor G C-terminus CP_RS01055 PF00009 Elongation factor Tu GTP binding domain CP_RS01055 PF03764 Elongation factor G, domain IV CP_RS01055 PF03144 Elongation factor Tu domain 2 CP_RS01060 PF00338 Ribosomal protein S10p/S20e CP_RS01065 PF00258 Flavodoxin CP_RS01065 PF00175 Oxidoreductase NAD-binding domain CP_RS01065 PF00667 FAD binding domain CP_RS01070 PF02542 YgbB family CP_RS01080 PF00829 Ribosomal prokaryotic L21 protein CP_RS01085 PF01016 Ribosomal L27 protein CP_RS01090 PF01926 50S ribosome-binding GTPase CP_RS01090 PF01018 GTP1/OBG CP_RS01095 PF00950 ABC 3 transport family CP_RS01100 PF00005 ABC transporter CP_RS01105 PF01297 Zinc-uptake complex component A periplasmic CP_RS01115 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01115 PF03797 Autotransporter beta-domain CP_RS01115 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01120 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01120 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01135 PF01235 Sodium:alanine symporter family CP_RS01140 PF01252 Signal peptidase (SPase) II CP_RS01145 PF01258 Prokaryotic dksA/traR C4-type zinc finger CP_RS01150 PF03477 ATP cone domain CP_RS01155 PF00677 Lumazine binding domain CP_RS01160 PF01170 Putative RNA methylase family UPF0020 CP_RS01160 PF02926 THUMP domain CP_RS01160 PF10672 S-adenosylmethionine-dependent methyltransferase CP_RS01165 PF00588 SpoU rRNA Methylase family CP_RS01165 PF08032 RNA 2'-O ribose methyltransferase substrate binding CP_RS01170 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CP_RS01175 PF00375 Sodium:dicarboxylate symporter family CP_RS01180 PF00364 Biotin-requiring enzyme CP_RS01180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CP_RS01180 PF02817 e3 binding domain CP_RS01185 PF01380 SIS domain CP_RS01185 PF00571 CBS domain CP_RS01215 PF00464 Serine hydroxymethyltransferase CP_RS01220 PF00574 Clp protease CP_RS01225 PF01678 Diaminopimelate epimerase CP_RS01230 PF03682 Uncharacterised protein family (UPF0158) CP_RS01245 PF01209 ubiE/COQ5 methyltransferase family CP_RS01255 PF04055 Radical SAM superfamily CP_RS01265 PF12228 Protein of unknown function (DUF3604) CP_RS01270 PF01740 STAS domain CP_RS01275 PF03471 Transporter associated domain CP_RS01275 PF00571 CBS domain CP_RS01280 PF02130 Uncharacterized protein family UPF0054 CP_RS01300 PF02245 Methylpurine-DNA glycosylase (MPG) CP_RS01305 PF08206 Ribonuclease B OB domain CP_RS01305 PF00773 RNB domain CP_RS01310 PF00012 Hsp70 protein CP_RS01315 PF01025 GrpE CP_RS01320 PF01628 HrcA protein C terminal domain CP_RS01325 PF03129 Anticodon binding domain CP_RS01325 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CP_RS01325 PF04073 Aminoacyl-tRNA editing domain CP_RS01340 PF02594 Uncharacterised ACR, YggU family COG1872 CP_RS01350 PF00155 Aminotransferase class I and II CP_RS01380 PF03690 Uncharacterised protein family (UPF0160) CP_RS01385 PF01230 HIT domain CP_RS01405 PF00793 DAHP synthetase I family CP_RS01405 PF01817 Chorismate mutase type II CP_RS01415 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP_RS01430 PF12706 Beta-lactamase superfamily domain CP_RS01430 PF03099 Biotin/lipoate A/B protein ligase family CP_RS01435 PF16360 GTP-binding GTPase Middle Region CP_RS01435 PF13167 GTP-binding GTPase N-terminal CP_RS01435 PF01926 50S ribosome-binding GTPase CP_RS01440 PF00919 Uncharacterized protein family UPF0004 CP_RS01440 PF04055 Radical SAM superfamily CP_RS01450 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CP_RS01450 PF00128 Alpha amylase, catalytic domain CP_RS01450 PF02806 Alpha amylase, C-terminal all-beta domain CP_RS01470 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01470 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01470 PF03797 Autotransporter beta-domain CP_RS01475 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01475 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01480 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01480 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01485 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01485 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01490 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01490 PF03797 Autotransporter beta-domain CP_RS01495 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01495 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01555 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01555 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01555 PF03797 Autotransporter beta-domain CP_RS01560 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01560 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01565 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01570 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01575 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01575 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01580 PF01717 Cobalamin-independent synthase, Catalytic domain CP_RS01585 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01585 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01590 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01590 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01595 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01595 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01605 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS01605 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS01610 PF17461 Family of unknown function (DUF5423) CP_RS01615 PF17459 Family of unknown function (DUF5422) CP_RS01640 PF02861 Clp amino terminal domain, pathogenicity island component CP_RS01640 PF10431 C-terminal, D2-small domain, of ClpB protein CP_RS01640 PF00004 ATPase family associated with various cellular activities (AAA) CP_RS01640 PF17871 AAA lid domain CP_RS01640 PF07724 AAA domain (Cdc48 subfamily) CP_RS01660 PF01597 Glycine cleavage H-protein CP_RS01675 PF02508 Rnf-Nqr subunit, membrane protein CP_RS01680 PF02508 Rnf-Nqr subunit, membrane protein CP_RS01685 PF04205 FMN-binding domain CP_RS01690 PF03116 NQR2, RnfD, RnfE family CP_RS01705 PF00308 Bacterial dnaA protein CP_RS01705 PF08299 Bacterial dnaA protein helix-turn-helix CP_RS01705 PF11638 DnaA N-terminal domain CP_RS01715 PF17377 Family of unknown function (DUF5399) CP_RS01720 PF01795 MraW methylase family CP_RS01730 PF00905 Penicillin binding protein transpeptidase domain CP_RS01730 PF03717 Penicillin-binding Protein dimerisation domain CP_RS01735 PF02875 Mur ligase family, glutamate ligase domain CP_RS01735 PF08245 Mur ligase middle domain CP_RS01735 PF01225 Mur ligase family, catalytic domain CP_RS01740 PF08239 Bacterial SH3 domain CP_RS01740 PF01520 N-acetylmuramoyl-L-alanine amidase CP_RS01750 PF00216 Bacterial DNA-binding protein CP_RS01760 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CP_RS01765 PF00664 ABC transporter transmembrane region CP_RS01765 PF00005 ABC transporter CP_RS01775 PF02621 Menaquinone biosynthesis CP_RS01820 PF00849 RNA pseudouridylate synthase CP_RS01820 PF01479 S4 domain CP_RS01825 PF00730 HhH-GPD superfamily base excision DNA repair protein CP_RS01825 PF14815 NUDIX domain CP_RS01825 PF00633 Helix-hairpin-helix motif CP_RS01860 PF00266 Aminotransferase class-V CP_RS01870 PF00571 CBS domain CP_RS01870 PF01595 Cyclin M transmembrane N-terminal domain CP_RS01870 PF03471 Transporter associated domain CP_RS01880 PF00692 dUTPase CP_RS01890 PF05491 RuvB C-terminal winged helix domain CP_RS01890 PF05496 Holliday junction DNA helicase RuvB P-loop domain CP_RS01890 PF17864 RuvB AAA lid domain CP_RS01895 PF08486 Stage II sporulation protein CP_RS01900 PF00128 Alpha amylase, catalytic domain CP_RS01900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CP_RS01910 PF00436 Single-strand binding protein family CP_RS01915 PF00883 Cytosol aminopeptidase family, catalytic domain CP_RS01915 PF02789 Cytosol aminopeptidase family, N-terminal domain CP_RS01920 PF07382 Histone H1-like nucleoprotein HC2 CP_RS01930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CP_RS01940 PF04055 Radical SAM superfamily CP_RS01940 PF06969 HemN C-terminal domain CP_RS01950 PF16078 2-oxoglutarate dehydrogenase N-terminus CP_RS01950 PF00676 Dehydrogenase E1 component CP_RS01950 PF02779 Transketolase, pyrimidine binding domain CP_RS01950 PF16870 2-oxoglutarate dehydrogenase C-terminal CP_RS01955 PF00364 Biotin-requiring enzyme CP_RS01955 PF02817 e3 binding domain CP_RS01955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CP_RS01970 PF02578 Multi-copper polyphenol oxidoreductase laccase CP_RS01975 PF04551 GcpE protein CP_RS02020 PF00111 2Fe-2S iron-sulfur cluster binding domain CP_RS02030 PF00771 FHIPEP family CP_RS02035 PF04542 Sigma-70 region 2 CP_RS02035 PF04539 Sigma-70 region 3 CP_RS02035 PF04545 Sigma-70, region 4 CP_RS02045 PF00579 tRNA synthetases class I (W and Y) CP_RS02045 PF01479 S4 domain CP_RS02050 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CP_RS02050 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CP_RS02055 PF06421 GTP-binding protein LepA C-terminus CP_RS02055 PF03144 Elongation factor Tu domain 2 CP_RS02055 PF00009 Elongation factor Tu GTP binding domain CP_RS02055 PF00679 Elongation factor G C-terminus CP_RS02095 PF03219 TLC ATP/ADP transporter CP_RS02110 PF01297 Zinc-uptake complex component A periplasmic CP_RS02115 PF00005 ABC transporter CP_RS02120 PF02742 Iron dependent repressor, metal binding and dimerisation domain CP_RS02120 PF00950 ABC 3 transport family CP_RS02125 PF00950 ABC 3 transport family CP_RS02130 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CP_RS02130 PF13288 DXP reductoisomerase C-terminal domain CP_RS02130 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CP_RS02135 PF02163 Peptidase family M50 CP_RS02150 PF00712 DNA polymerase III beta subunit, N-terminal domain CP_RS02150 PF02767 DNA polymerase III beta subunit, central domain CP_RS02150 PF02768 DNA polymerase III beta subunit, C-terminal domain CP_RS02155 PF01668 SmpB protein CP_RS02160 PF02424 ApbE family CP_RS02165 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CP_RS02165 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CP_RS02175 PF17455 Late transcription unit B CP_RS02200 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CP_RS02205 PF00830 Ribosomal L28 family CP_RS02210 PF02446 4-alpha-glucanotransferase CP_RS02225 PF00771 FHIPEP family CP_RS02230 PF01312 FlhB HrpN YscU SpaS Family CP_RS02235 PF01926 50S ribosome-binding GTPase CP_RS02235 PF06071 Protein of unknown function (DUF933) CP_RS02240 PF06574 FAD synthetase CP_RS02240 PF01687 Riboflavin kinase CP_RS02245 PF01509 TruB family pseudouridylate synthase (N terminal domain) CP_RS02245 PF16198 tRNA pseudouridylate synthase B C-terminal domain CP_RS02250 PF02033 Ribosome-binding factor A CP_RS02255 PF00009 Elongation factor Tu GTP binding domain CP_RS02255 PF11987 Translation-initiation factor 2 CP_RS02255 PF04760 Translation initiation factor IF-2, N-terminal region CP_RS02260 PF00575 S1 RNA binding domain CP_RS02260 PF13184 NusA-like KH domain CP_RS02260 PF08529 NusA N-terminal domain CP_RS02265 PF00575 S1 RNA binding domain CP_RS02270 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP_RS02275 PF01648 4'-phosphopantetheinyl transferase superfamily CP_RS02285 PF01790 Prolipoprotein diacylglyceryl transferase CP_RS02290 PF02096 60Kd inner membrane protein CP_RS02295 PF08299 Bacterial dnaA protein helix-turn-helix CP_RS02295 PF00308 Bacterial dnaA protein CP_RS02305 PF00343 Carbohydrate phosphorylase CP_RS02310 PF00364 Biotin-requiring enzyme CP_RS02310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CP_RS02310 PF02817 e3 binding domain CP_RS02315 PF02780 Transketolase, C-terminal domain CP_RS02315 PF02779 Transketolase, pyrimidine binding domain CP_RS02315 PF00364 Biotin-requiring enzyme CP_RS02320 PF00676 Dehydrogenase E1 component CP_RS02330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CP_RS02330 PF00132 Bacterial transferase hexapeptide (six repeats) CP_RS02330 PF14602 Hexapeptide repeat of succinyl-transferase CP_RS02335 PF03938 Outer membrane protein (OmpH-like) CP_RS02340 PF07244 Surface antigen variable number repeat CP_RS02340 PF01103 Surface antigen CP_RS02345 PF13662 Toprim domain CP_RS02350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CP_RS02350 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CP_RS02355 PF00698 Acyl transferase domain CP_RS02365 PF00550 Phosphopantetheine attachment site CP_RS02390 PF00209 Sodium:neurotransmitter symporter family CP_RS02395 PF00375 Sodium:dicarboxylate symporter family CP_RS02410 PF00571 CBS domain CP_RS02410 PF01769 Divalent cation transporter CP_RS02410 PF03448 MgtE intracellular N domain CP_RS02430 PF13520 Amino acid permease CP_RS02435 PF01791 DeoC/LacD family aldolase CP_RS02440 PF09383 NIL domain CP_RS02440 PF00005 ABC transporter CP_RS02445 PF00528 Binding-protein-dependent transport system inner membrane component CP_RS02450 PF03180 NLPA lipoprotein CP_RS02465 PF00204 DNA gyrase B CP_RS02465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP_RS02465 PF01751 Toprim domain CP_RS02465 PF00986 DNA gyrase B subunit, carboxyl terminus CP_RS02470 PF03989 DNA gyrase C-terminal domain, beta-propeller CP_RS02470 PF00521 DNA gyrase/topoisomerase IV, subunit A CP_RS02475 PF02223 Thymidylate kinase CP_RS02490 PF01300 Telomere recombination CP_RS02515 PF01040 UbiA prenyltransferase family CP_RS02520 PF02441 Flavoprotein CP_RS02525 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CP_RS02525 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CP_RS02540 PF01975 Survival protein SurE CP_RS02545 PF01171 PP-loop family CP_RS02550 PF02810 SEC-C motif CP_RS02550 PF07517 SecA DEAD-like domain CP_RS02550 PF01043 SecA preprotein cross-linking domain CP_RS02550 PF07516 SecA Wing and Scaffold domain CP_RS02600 PF04055 Radical SAM superfamily CP_RS02600 PF18693 TRAM domain CP_RS02600 PF00919 Uncharacterized protein family UPF0004 CP_RS02605 PF00471 Ribosomal protein L33 CP_RS02610 PF02687 FtsX-like permease family CP_RS02610 PF12704 MacB-like periplasmic core domain CP_RS02615 PF00005 ABC transporter CP_RS02620 PF00572 Ribosomal protein L13 CP_RS02625 PF00380 Ribosomal protein S9/S16 CP_RS02660 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CP_RS02665 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CP_RS02665 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CP_RS02670 PF03652 Holliday junction resolvase CP_RS02675 PF06418 CTP synthase N-terminus CP_RS02675 PF00117 Glutamine amidotransferase class-I CP_RS02680 PF02348 Cytidylyltransferase CP_RS02710 PF00005 ABC transporter CP_RS02730 PF02600 Disulfide bond formation protein DsbB CP_RS02770 PF01702 Queuine tRNA-ribosyltransferase CP_RS02825 PF00365 Phosphofructokinase CP_RS02830 PF00939 Sodium:sulfate symporter transmembrane region CP_RS02835 PF06685 Protein of unknown function (DUF1186) CP_RS02855 PF00005 ABC transporter CP_RS02855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP_RS02860 PF00005 ABC transporter CP_RS02860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP_RS02865 PF00528 Binding-protein-dependent transport system inner membrane component CP_RS02865 PF12911 N-terminal TM domain of oligopeptide transport permease C CP_RS02870 PF00528 Binding-protein-dependent transport system inner membrane component CP_RS02875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP_RS02880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP_RS02885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP_RS02890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP_RS02895 PF00814 Glycoprotease family CP_RS02900 PF01316 Arginine repressor, DNA binding domain CP_RS02900 PF02863 Arginine repressor, C-terminal domain CP_RS02905 PF00528 Binding-protein-dependent transport system inner membrane component CP_RS02910 PF00005 ABC transporter CP_RS02925 PF03631 Virulence factor BrkB CP_RS02940 PF00834 Ribulose-phosphate 3 epimerase family CP_RS02945 PF01132 Elongation factor P (EF-P) OB domain CP_RS02945 PF08207 Elongation factor P (EF-P) KOW-like domain CP_RS02945 PF09285 Elongation factor P, C-terminal CP_RS02950 PF00364 Biotin-requiring enzyme CP_RS02955 PF00289 Biotin carboxylase, N-terminal domain CP_RS02955 PF02785 Biotin carboxylase C-terminal domain CP_RS02955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CP_RS03005 PF00117 Glutamine amidotransferase class-I CP_RS03005 PF00958 GMP synthase C terminal domain CP_RS03010 PF00962 Adenosine/AMP deaminase CP_RS03060 PF00365 Phosphofructokinase CP_RS03100 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CP_RS03105 PF00133 tRNA synthetases class I (I, L, M and V) CP_RS03105 PF08264 Anticodon-binding domain of tRNA CP_RS03105 PF13603 Leucyl-tRNA synthetase, Domain 2 CP_RS03105 PF09334 tRNA synthetases class I (M) CP_RS03115 PF01494 FAD binding domain CP_RS03125 PF00533 BRCA1 C Terminus (BRCT) domain CP_RS03125 PF01653 NAD-dependent DNA ligase adenylation domain CP_RS03125 PF03120 NAD-dependent DNA ligase OB-fold domain CP_RS03125 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CP_RS03125 PF12826 Helix-hairpin-helix motif CP_RS03130 PF03781 Sulfatase-modifying factor enzyme 1 CP_RS03150 PF07724 AAA domain (Cdc48 subfamily) CP_RS03150 PF00004 ATPase family associated with various cellular activities (AAA) CP_RS03150 PF17871 AAA lid domain CP_RS03150 PF02861 Clp amino terminal domain, pathogenicity island component CP_RS03150 PF10431 C-terminal, D2-small domain, of ClpB protein CP_RS03155 PF01717 Cobalamin-independent synthase, Catalytic domain CP_RS03165 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CP_RS03175 PF02622 Uncharacterized ACR, COG1678 CP_RS03180 PF00202 Aminotransferase class-III CP_RS03185 PF01784 NIF3 (NGG1p interacting factor 3) CP_RS03190 PF08439 Oligopeptidase F CP_RS03190 PF01432 Peptidase family M3 CP_RS03195 PF00166 Chaperonin 10 Kd subunit CP_RS03200 PF00118 TCP-1/cpn60 chaperonin family CP_RS03230 PF09825 Biotin-protein ligase, N terminal CP_RS03235 PF00892 EamA-like transporter family CP_RS03255 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CP_RS03255 PF13538 UvrD-like helicase C-terminal domain CP_RS03255 PF14490 Helix-hairpin-helix containing domain CP_RS03260 PF09334 tRNA synthetases class I (M) CP_RS03260 PF08264 Anticodon-binding domain of tRNA CP_RS03270 PF00625 Guanylate kinase CP_RS03275 PF01351 Ribonuclease HII CP_RS03280 PF01245 Ribosomal protein L19 CP_RS03285 PF01746 tRNA (Guanine-1)-methyltransferase CP_RS03290 PF00886 Ribosomal protein S16 CP_RS03295 PF02978 Signal peptide binding domain CP_RS03295 PF02881 SRP54-type protein, helical bundle domain CP_RS03295 PF00448 SRP54-type protein, GTPase domain CP_RS03300 PF17827 PrmC N-terminal domain CP_RS03300 PF05175 Methyltransferase small domain CP_RS03305 PF03462 PCRF domain CP_RS03305 PF00472 RF-1 domain CP_RS03310 PF01197 Ribosomal protein L31 CP_RS03320 PF10502 Signal peptidase, peptidase S26 CP_RS03325 PF00133 tRNA synthetases class I (I, L, M and V) CP_RS03325 PF08264 Anticodon-binding domain of tRNA CP_RS03345 PF02562 PhoH-like protein CP_RS03345 PF13638 PIN domain CP_RS03360 PF02322 Cytochrome bd terminal oxidase subunit II CP_RS03365 PF01654 Cytochrome bd terminal oxidase subunit I CP_RS03370 PF02457 DisA bacterial checkpoint controller nucleotide-binding CP_RS03370 PF10372 Bacterial membrane-spanning protein N-terminus CP_RS03385 PF03279 Bacterial lipid A biosynthesis acyltransferase CP_RS03390 PF02887 Pyruvate kinase, alpha/beta domain CP_RS03390 PF00224 Pyruvate kinase, barrel domain CP_RS03395 PF17755 UvrA DNA-binding domain CP_RS03395 PF17760 UvrA interaction domain CP_RS03400 PF00069 Protein kinase domain CP_RS03405 PF08264 Anticodon-binding domain of tRNA CP_RS03405 PF00133 tRNA synthetases class I (I, L, M and V) CP_RS03425 PF01813 ATP synthase subunit D CP_RS03430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP_RS03430 PF02874 ATP synthase alpha/beta family, beta-barrel domain CP_RS03435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP_RS03435 PF02874 ATP synthase alpha/beta family, beta-barrel domain CP_RS03435 PF16886 ATPsynthase alpha/beta subunit N-term extension CP_RS03440 PF10962 Protein of unknown function (DUF2764) CP_RS03445 PF06188 HrpE/YscL/FliH and V-type ATPase subunit E CP_RS03460 PF00923 Transaldolase/Fructose-6-phosphate aldolase CP_RS03465 PF00623 RNA polymerase Rpb1, domain 2 CP_RS03465 PF05000 RNA polymerase Rpb1, domain 4 CP_RS03465 PF04998 RNA polymerase Rpb1, domain 5 CP_RS03465 PF04983 RNA polymerase Rpb1, domain 3 CP_RS03465 PF04997 RNA polymerase Rpb1, domain 1 CP_RS03470 PF04565 RNA polymerase Rpb2, domain 3 CP_RS03470 PF04563 RNA polymerase beta subunit CP_RS03470 PF10385 RNA polymerase beta subunit external 1 domain CP_RS03470 PF00562 RNA polymerase Rpb2, domain 6 CP_RS03470 PF04561 RNA polymerase Rpb2, domain 2 CP_RS03470 PF04560 RNA polymerase Rpb2, domain 7 CP_RS03475 PF00542 Ribosomal protein L7/L12 C-terminal domain CP_RS03475 PF16320 Ribosomal protein L7/L12 dimerisation domain CP_RS03480 PF00466 Ribosomal protein L10 CP_RS03485 PF00687 Ribosomal protein L1p/L10e family CP_RS03490 PF00298 Ribosomal protein L11, RNA binding domain CP_RS03490 PF03946 Ribosomal protein L11, N-terminal domain CP_RS03495 PF02357 Transcription termination factor nusG CP_RS03510 PF03143 Elongation factor Tu C-terminal domain CP_RS03510 PF00009 Elongation factor Tu GTP binding domain CP_RS03510 PF03144 Elongation factor Tu domain 2 CP_RS03520 PF01176 Translation initiation factor 1A / IF-1 CP_RS03585 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP_RS03590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP_RS03595 PF00692 dUTPase CP_RS03600 PF17848 Acetyl-coA carboxylase zinc finger domain CP_RS03600 PF01039 Carboxyl transferase domain CP_RS03605 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CP_RS03605 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CP_RS03610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CP_RS03610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CP_RS03610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CP_RS03610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CP_RS03620 PF14622 Ribonuclease-III-like CP_RS03620 PF00035 Double-stranded RNA binding motif CP_RS03625 PF18073 Rubredoxin metal binding domain CP_RS03630 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CP_RS03650 PF07697 7TM-HD extracellular CP_RS03650 PF01966 HD domain CP_RS03650 PF07698 7TM receptor with intracellular HD hydrolase CP_RS03690 PF12169 DNA polymerase III subunits gamma and tau domain III CP_RS03695 PF02575 YbaB/EbfC DNA-binding family CP_RS03700 PF02896 PEP-utilising enzyme, TIM barrel domain CP_RS03700 PF05524 PEP-utilising enzyme, N-terminal CP_RS03700 PF00391 PEP-utilising enzyme, mobile domain CP_RS03705 PF00381 PTS HPr component phosphorylation site CP_RS03725 PF02780 Transketolase, C-terminal domain CP_RS03725 PF02779 Transketolase, pyrimidine binding domain CP_RS03730 PF00684 DnaJ central domain CP_RS03730 PF00226 DnaJ domain CP_RS03730 PF01556 DnaJ C terminal domain CP_RS03735 PF01165 Ribosomal protein S21 CP_RS03740 PF00814 Glycoprotease family CP_RS03755 PF00004 ATPase family associated with various cellular activities (AAA) CP_RS03755 PF02190 ATP-dependent protease La (LON) substrate-binding domain CP_RS03755 PF05362 Lon protease (S16) C-terminal proteolytic domain CP_RS03765 PF00753 Metallo-beta-lactamase superfamily CP_RS03770 PF00589 Phage integrase family CP_RS03770 PF13495 Phage integrase, N-terminal SAM-like domain CP_RS03775 PF00005 ABC transporter CP_RS03775 PF12848 ABC transporter CP_RS03780 PF02545 Maf-like protein CP_RS03795 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS03795 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS03800 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS03800 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS03810 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS03810 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS03820 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS03820 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS03825 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS03825 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP_RS03830 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS03870 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS03875 PF02934 GatB/GatE catalytic domain CP_RS03875 PF02637 GatB domain CP_RS03880 PF01425 Amidase CP_RS03885 PF02686 Glu-tRNAGln amidotransferase C subunit CP_RS03900 PF11019 Protein of unknown function (DUF2608) CP_RS03930 PF01351 Ribonuclease HII CP_RS03930 PF11858 Domain of unknown function (DUF3378) CP_RS03935 PF01327 Polypeptide deformylase CP_RS03955 PF00121 Triosephosphate isomerase CP_RS03960 PF13742 OB-fold nucleic acid binding domain CP_RS03960 PF02601 Exonuclease VII, large subunit CP_RS03965 PF02609 Exonuclease VII small subunit CP_RS03975 PF02779 Transketolase, pyrimidine binding domain CP_RS03975 PF02780 Transketolase, C-terminal domain CP_RS03975 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CP_RS03980 PF00398 Ribosomal RNA adenine dimethylase CP_RS03990 PF03190 Protein of unknown function, DUF255 CP_RS04025 PF00701 Dihydrodipicolinate synthetase family CP_RS04030 PF00696 Amino acid kinase family CP_RS04035 PF02774 Semialdehyde dehydrogenase, dimerisation domain CP_RS04035 PF01118 Semialdehyde dehydrogenase, NAD binding domain CP_RS04040 PF01113 Dihydrodipicolinate reductase, N-terminus CP_RS04040 PF05173 Dihydrodipicolinate reductase, C-terminus CP_RS04045 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CP_RS04055 PF06968 Biotin and Thiamin Synthesis associated domain CP_RS04055 PF04055 Radical SAM superfamily CP_RS04060 PF00155 Aminotransferase class I and II CP_RS04070 PF00202 Aminotransferase class-III CP_RS04080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CP_RS04085 PF01202 Shikimate kinase CP_RS04090 PF01264 Chorismate synthase CP_RS04095 PF01761 3-dehydroquinate synthase CP_RS04100 PF01487 Type I 3-dehydroquinase CP_RS04100 PF08501 Shikimate dehydrogenase substrate binding domain CP_RS04100 PF01488 Shikimate / quinate 5-dehydrogenase CP_RS04105 PF11019 Protein of unknown function (DUF2608) CP_RS04110 PF04966 Carbohydrate-selective porin, OprB family CP_RS04115 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) CP_RS04120 PF13520 Amino acid permease CP_RS04125 PF01266 FAD dependent oxidoreductase CP_RS04125 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CP_RS04135 PF00056 lactate/malate dehydrogenase, NAD binding domain CP_RS04135 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CP_RS04145 PF17446 Late transcription unit A CP_RS04150 PF00342 Phosphoglucose isomerase CP_RS04155 PF00589 Phage integrase family CP_RS04155 PF02899 Phage integrase, N-terminal SAM-like domain CP_RS04195 PF02401 LytB protein CP_RS04200 PF03572 Peptidase family S41 CP_RS04200 PF17816 PDZ domain CP_RS04205 PF03600 Citrate transporter CP_RS04210 PF01740 STAS domain CP_RS04210 PF00916 Sulfate permease family CP_RS04215 PF00206 Lyase CP_RS04215 PF10415 Fumarase C C-terminus CP_RS04220 PF00528 Binding-protein-dependent transport system inner membrane component CP_RS04230 PF01914 MarC family integral membrane protein CP_RS04235 PF02810 SEC-C motif CP_RS04235 PF00557 Metallopeptidase family M24 CP_RS04275 PF14437 MafB19-like deaminase CP_RS04280 PF00312 Ribosomal protein S15 CP_RS04285 PF01138 3' exoribonuclease family, domain 1 CP_RS04285 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CP_RS04285 PF00013 KH domain CP_RS04285 PF00575 S1 RNA binding domain CP_RS04285 PF03725 3' exoribonuclease family, domain 2 CP_RS04290 PF17862 AAA+ lid domain CP_RS04290 PF01434 Peptidase family M41 CP_RS04290 PF00004 ATPase family associated with various cellular activities (AAA) CP_RS04295 PF01171 PP-loop family CP_RS04320 PF01409 tRNA synthetases class II core domain (F) CP_RS04320 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CP_RS04325 PF00453 Ribosomal protein L20 CP_RS04330 PF01632 Ribosomal protein L35 CP_RS04335 PF00707 Translation initiation factor IF-3, C-terminal domain CP_RS04335 PF05198 Translation initiation factor IF-3, N-terminal domain CP_RS04340 PF01029 NusB family CP_RS04345 PF01565 FAD binding domain CP_RS04345 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CP_RS04350 PF06962 Putative rRNA methylase CP_RS04360 PF02390 Putative methyltransferase CP_RS04365 PF00268 Ribonucleotide reductase, small chain CP_RS04370 PF00317 Ribonucleotide reductase, all-alpha domain CP_RS04370 PF02867 Ribonucleotide reductase, barrel domain CP_RS04370 PF03477 ATP cone domain CP_RS04380 PF02646 RmuC family CP_RS04385 PF05193 Peptidase M16 inactive domain CP_RS04385 PF00675 Insulinase (Peptidase family M16) CP_RS04385 PF08367 Peptidase M16C associated CP_RS04390 PF07687 Peptidase dimerisation domain CP_RS04390 PF01546 Peptidase family M20/M25/M40 CP_RS04395 PF13180 PDZ domain CP_RS04395 PF17820 PDZ domain CP_RS04425 PF02629 CoA binding domain CP_RS04425 PF00549 CoA-ligase CP_RS04430 PF08442 ATP-grasp domain CP_RS04430 PF00549 CoA-ligase CP_RS04435 PF00448 SRP54-type protein, GTPase domain CP_RS04440 PF01027 Inhibitor of apoptosis-promoting Bax1 CP_RS04445 PF03222 Tryptophan/tyrosine permease family CP_RS04455 PF03222 Tryptophan/tyrosine permease family CP_RS04460 PF01380 SIS domain CP_RS04465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CP_RS04465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CP_RS04465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CP_RS04465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CP_RS04470 PF01743 Poly A polymerase head domain CP_RS04470 PF12626 Polymerase A arginine-rich C-terminus CP_RS04470 PF12627 Probable RNA and SrmB- binding site of polymerase A CP_RS04475 PF07578 Lipid A Biosynthesis N-terminal domain CP_RS04475 PF02684 Lipid-A-disaccharide synthetase CP_RS04485 PF03797 Autotransporter beta-domain CP_RS04485 PF07548 Chlamydia polymorphic membrane protein middle domain CP_RS04490 PF02504 Fatty acid synthesis protein CP_RS04495 PF01783 Ribosomal L32p protein family CP_RS04505 PF00575 S1 RNA binding domain CP_RS04505 PF10150 Ribonuclease E/G family CP_RS04515 PF00675 Insulinase (Peptidase family M16) CP_RS04515 PF05193 Peptidase M16 inactive domain CP_RS04530 PF00288 GHMP kinases N terminal domain CP_RS04535 PF01281 Ribosomal protein L9, N-terminal domain CP_RS04535 PF03948 Ribosomal protein L9, C-terminal domain CP_RS04540 PF01084 Ribosomal protein S18 CP_RS04545 PF01250 Ribosomal protein S6 CP_RS04550 PF01195 Peptidyl-tRNA hydrolase CP_RS04555 PF01386 Ribosomal L25p family CP_RS04555 PF14693 Ribosomal protein TL5, C-terminal domain CP_RS04565 PF00534 Glycosyl transferases group 1 CP_RS04565 PF08323 Starch synthase catalytic domain CP_RS04570 PF01066 CDP-alcohol phosphatidyltransferase CP_RS04575 PF02092 Glycyl-tRNA synthetase beta subunit CP_RS04575 PF02091 Glycyl-tRNA synthetase alpha subunit CP_RS04595 PF08275 DNA primase catalytic core, N-terminal domain CP_RS04595 PF01807 CHC2 zinc finger CP_RS04600 PF05190 MutS family domain IV CP_RS04600 PF05192 MutS domain III CP_RS04600 PF05188 MutS domain II CP_RS04600 PF01624 MutS domain I CP_RS04600 PF00488 MutS domain V CP_RS04605 PF08459 UvrC Helix-hairpin-helix N-terminal CP_RS04605 PF01541 GIY-YIG catalytic domain CP_RS04620 PF00253 Ribosomal protein S14p/S29e CP_RS04625 PF00444 Ribosomal protein L36 CP_RS04630 PF00468 Ribosomal protein L34 CP_RS04635 PF00825 Ribonuclease P CP_RS04645 PF09190 DALR domain CP_RS04645 PF01406 tRNA synthetases class I (C) catalytic domain CP_RS04650 PF01336 OB-fold nucleic acid binding domain CP_RS04650 PF00152 tRNA synthetases class II (D, K and N) CP_RS04685 PF04851 Type III restriction enzyme, res subunit CP_RS04685 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CP_RS04685 PF18074 Primosomal protein N C-terminal domain CP_RS04685 PF00271 Helicase conserved C-terminal domain CP_RS04685 PF17764 3′ DNA-binding domain (3′BD) CP_RS04690 PF00155 Aminotransferase class I and II CP_RS04695 PF13193 AMP-binding enzyme C-terminal domain CP_RS04695 PF01553 Acyltransferase CP_RS04695 PF00501 AMP-binding enzyme CP_RS04705 PF00459 Inositol monophosphatase family CP_RS04710 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CP_RS04710 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CP_RS04715 PF00719 Inorganic pyrophosphatase CP_RS04720 PF00293 NUDIX domain CP_RS04725 PF00109 Beta-ketoacyl synthase, N-terminal domain CP_RS04725 PF02801 Beta-ketoacyl synthase, C-terminal domain CP_RS04750 PF04055 Radical SAM superfamily CP_RS04780 PF01225 Mur ligase family, catalytic domain CP_RS04780 PF02875 Mur ligase family, glutamate ligase domain CP_RS04780 PF08245 Mur ligase middle domain CP_RS04780 PF01820 D-ala D-ala ligase N-terminus CP_RS04780 PF07478 D-ala D-ala ligase C-terminus CP_RS04785 PF03033 Glycosyltransferase family 28 N-terminal domain CP_RS04785 PF04101 Glycosyltransferase family 28 C-terminal domain CP_RS04790 PF01098 Cell cycle protein CP_RS04795 PF01476 LysM domain CP_RS04795 PF00877 NlpC/P60 family CP_RS04800 PF02875 Mur ligase family, glutamate ligase domain CP_RS04800 PF08245 Mur ligase middle domain CP_RS04805 PF00953 Glycosyl transferase family 4 CP_RS04810 PF08245 Mur ligase middle domain CP_RS04810 PF01225 Mur ligase family, catalytic domain CP_RS04810 PF02875 Mur ligase family, glutamate ligase domain CP_RS04820 PF00118 TCP-1/cpn60 chaperonin family CP_RS04835 PF09285 Elongation factor P, C-terminal CP_RS04835 PF01132 Elongation factor P (EF-P) OB domain CP_RS04835 PF08207 Elongation factor P (EF-P) KOW-like domain CP_RS04845 PF02779 Transketolase, pyrimidine binding domain CP_RS04845 PF02780 Transketolase, C-terminal domain CP_RS04845 PF00456 Transketolase, thiamine diphosphate binding domain CP_RS04850 PF01411 tRNA synthetases class II (A) CP_RS04850 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CP_RS04850 PF02272 DHHA1 domain CP_RS04855 PF17757 UvrB interaction domain CP_RS04855 PF03461 TRCF domain CP_RS04855 PF00271 Helicase conserved C-terminal domain CP_RS04855 PF00270 DEAD/DEAH box helicase CP_RS04855 PF02559 CarD-like/TRCF domain CP_RS04860 PF01208 Uroporphyrinogen decarboxylase (URO-D) CP_RS04865 PF04055 Radical SAM superfamily CP_RS04865 PF06969 HemN C-terminal domain CP_RS04870 PF01593 Flavin containing amine oxidoreductase CP_RS04880 PF07432 Histone H1-like protein Hc1 CP_RS04885 PF05958 tRNA (Uracil-5-)-methyltransferase CP_RS04890 PF02699 Preprotein translocase subunit CP_RS04895 PF00175 Oxidoreductase NAD-binding domain CP_RS04895 PF00111 2Fe-2S iron-sulfur cluster binding domain CP_RS04935 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CP_RS04935 PF01580 FtsK/SpoIIIE family CP_RS04935 PF09397 Ftsk gamma domain CP_RS04935 PF17854 FtsK alpha domain CP_RS04940 PF00753 Metallo-beta-lactamase superfamily CP_RS04950 PF01161 Phosphatidylethanolamine-binding protein CP_RS04955 PF01235 Sodium:alanine symporter family CP_RS04970 PF00885 6,7-dimethyl-8-ribityllumazine synthase CP_RS04975 PF00925 GTP cyclohydrolase II CP_RS04975 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CP_RS04980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CP_RS04980 PF01872 RibD C-terminal domain CP_RS04985 PF02403 Seryl-tRNA synthetase N-terminal domain CP_RS04985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CP_RS04995 PF00403 Heavy-metal-associated domain CP_RS05000 PF01098 Cell cycle protein CP_RS05005 PF03099 Biotin/lipoate A/B protein ligase family CP_RS05005 PF02237 Biotin protein ligase C terminal domain CP_RS05015 PF00849 RNA pseudouridylate synthase CP_RS05015 PF01479 S4 domain CP_RS05020 PF00300 Histidine phosphatase superfamily (branch 1) CP_RS05025 PF00266 Aminotransferase class-V CP_RS05035 PF14841 FliG middle domain CP_RS05035 PF01706 FliG C-terminal domain CP_RS05035 PF14842 FliG N-terminal domain CP_RS05045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP_RS05045 PF02874 ATP synthase alpha/beta family, beta-barrel domain CP_RS05045 PF18269 T3SS EscN ATPase C-terminal domain CP_RS05060 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CP_RS05060 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CP_RS05080 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CP_RS05080 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CP_RS05090 PF00271 Helicase conserved C-terminal domain CP_RS05090 PF00176 SNF2 family N-terminal domain CP_RS05090 PF04434 SWIM zinc finger CP_RS05100 PF05697 Bacterial trigger factor protein (TF) CP_RS05100 PF05698 Bacterial trigger factor protein (TF) C-terminus CP_RS05105 PF00574 Clp protease CP_RS05110 PF06689 ClpX C4-type zinc finger CP_RS05110 PF10431 C-terminal, D2-small domain, of ClpB protein CP_RS05110 PF07724 AAA domain (Cdc48 subfamily) CP_RS05115 PF01743 Poly A polymerase head domain CP_RS05115 PF12627 Probable RNA and SrmB- binding site of polymerase A CP_RS05115 PF13735 tRNA nucleotidyltransferase domain 2 putative CP_RS05120 PF01926 50S ribosome-binding GTPase CP_RS05120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CP_RS05135 PF07517 SecA DEAD-like domain CP_RS05135 PF01043 SecA preprotein cross-linking domain CP_RS05135 PF07516 SecA Wing and Scaffold domain CP_RS05145 PF02666 Phosphatidylserine decarboxylase CP_RS05150 PF01926 50S ribosome-binding GTPase CP_RS05150 PF10396 GTP-binding protein TrmE N-terminus CP_RS05150 PF12631 MnmE helical domain CP_RS05155 PF00730 HhH-GPD superfamily base excision DNA repair protein CP_RS05155 PF10576 Iron-sulfur binding domain of endonuclease III CP_RS05160 PF05525 Branched-chain amino acid transport protein CP_RS05165 PF00271 Helicase conserved C-terminal domain CP_RS05165 PF00176 SNF2 family N-terminal domain CP_RS05165 PF04434 SWIM zinc finger CP_RS05175 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP_RS05175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP_RS05180 PF04055 Radical SAM superfamily CP_RS05200 PF01514 Secretory protein of YscJ/FliF family CP_RS05210 PF02108 Flagellar assembly protein FliH CP_RS05215 PF00813 FliP family CP_RS05220 PF01313 Bacterial export proteins, family 3 CP_RS05225 PF01311 Bacterial export proteins, family 1 CP_RS05250 PF07963 Prokaryotic N-terminal methylation motif CP_RS05255 PF00482 Type II secretion system (T2SS), protein F CP_RS05260 PF00437 Type II/IV secretion system protein CP_RS05265 PF03958 Bacterial type II/III secretion system short domain CP_RS05265 PF00263 Bacterial type II and III secretion system protein CP_RS05275 PF01321 Creatinase/Prolidase N-terminal domain CP_RS05275 PF00557 Metallopeptidase family M24 CP_RS05280 PF08676 MutL C terminal dimerisation domain CP_RS05280 PF01119 DNA mismatch repair protein, C-terminal domain CP_RS05300 PF04888 Secretion system effector C (SseC) like family CP_RS05305 PF00892 EamA-like transporter family CP_RS05310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CP_RS05310 PF03129 Anticodon binding domain CP_RS05310 PF02824 TGS domain CP_RS05310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CP_RS05315 PF13614 AAA domain CP_RS05320 PF03677 Uncharacterised protein family (UPF0137) CP_RS05325 PF17435 Family of unknown function (DUF5414) CP_RS05330 PF00579 tRNA synthetases class I (W and Y) CP_RS05335 PF17757 UvrB interaction domain CP_RS05335 PF00271 Helicase conserved C-terminal domain CP_RS05335 PF12344 Ultra-violet resistance protein B CP_RS05335 PF02151 UvrB/uvrC motif CP_RS05335 PF04851 Type III restriction enzyme, res subunit CP_RS05340 PF03952 Enolase, N-terminal domain CP_RS05340 PF00113 Enolase, C-terminal TIM barrel domain CP_RS05390 PF13183 4Fe-4S dicluster domain CP_RS05390 PF13085 2Fe-2S iron-sulfur cluster binding domain CP_RS05395 PF02910 Fumarate reductase flavoprotein C-term CP_RS05395 PF00890 FAD binding domain CP_RS05405 PF01026 TatD related DNase CP_RS05410 PF02683 Cytochrome C biogenesis protein transmembrane region CP_RS05410 PF11412 Disulphide bond corrector protein DsbC CP_RS05415 PF01618 MotA/TolQ/ExbB proton channel family CP_RS05420 PF02472 Biopolymer transport protein ExbD/TolR CP_RS05435 PF07676 WD40-like Beta Propeller Repeat CP_RS05440 PF00691 OmpA family CP_RS05445 PF01476 LysM domain CP_RS05445 PF01551 Peptidase family M23 CP_RS05455 PF00578 AhpC/TSA family CP_RS05455 PF10417 C-terminal domain of 1-Cys peroxiredoxin CP_RS05465 PF00118 TCP-1/cpn60 chaperonin family CP_RS05475 PF01725 Ham1 family CP_RS05485 PF03167 Uracil DNA glycosylase superfamily CP_RS05490 PF00580 UvrD/REP helicase N-terminal domain CP_RS05490 PF13361 UvrD-like helicase C-terminal domain CP_RS05495 PF04552 Sigma-54, DNA binding domain CP_RS05495 PF04963 Sigma-54 factor, core binding domain CP_RS05495 PF00309 Sigma-54 factor, Activator interacting domain (AID) CP_RS05505 PF01751 Toprim domain CP_RS05505 PF01131 DNA topoisomerase CP_RS05505 PF01396 Topoisomerase DNA binding C4 zinc finger CP_RS05510 PF01207 Dihydrouridine synthase (Dus) CP_RS05535 PF01812 5-formyltetrahydrofolate cyclo-ligase family CP_RS05540 PF00154 recA bacterial DNA recombination protein CP_RS05545 PF03070 TENA/THI-4/PQQC family CP_RS05550 PF01996 F420-0:Gamma-glutamyl ligase CP_RS05550 PF00881 Nitroreductase family CP_RS05555 PF00186 Dihydrofolate reductase CP_RS05560 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CP_RS05560 PF00809 Pterin binding enzyme CP_RS05565 PF02152 Dihydroneopterin aldolase CP_RS05570 PF04542 Sigma-70 region 2 CP_RS05570 PF04539 Sigma-70 region 3 CP_RS05570 PF04545 Sigma-70, region 4 CP_RS05570 PF03979 Sigma-70 factor, region 1.1 CP_RS05570 PF00140 Sigma-70 factor, region 1.2 CP_RS05575 PF18095 UPF0242 C-terminal PAS-like domain CP_RS05575 PF06785 Uncharacterised protein family (UPF0242) N-terminus CP_RS05580 PF01649 Ribosomal protein S20 CP_RS05590 PF13538 UvrD-like helicase C-terminal domain CP_RS05600 PF00486 Transcriptional regulatory protein, C terminal CP_RS05605 PF14602 Hexapeptide repeat of succinyl-transferase CP_RS05605 PF00132 Bacterial transferase hexapeptide (six repeats) CP_RS05605 PF12804 MobA-like NTP transferase domain CP_RS05610 PF00348 Polyprenyl synthetase CP_RS05625 PF02511 Thymidylate synthase complementing protein